BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029520
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
           Tokodaii
 pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
           Tokodaii
          Length = 206

 Score = 30.0 bits (66), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 95  YLLLMAHDI--------TVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVP 146
           +++++A DI        TV ++FR   + + Y WLL+ +G Y  F  +  I     + V 
Sbjct: 5   HMIILAFDIFGTVLDTSTVIQEFRN--KQLEYTWLLTIMGKYVEFEEITKITLRYILKVR 62

Query: 147 ALYSRFEARVDRYCGMIHKSISQHYKVVDE 176
              S+F+  ++++  +     +++ K + E
Sbjct: 63  GEESKFDEELNKWKNLKAYEDTKYLKEISE 92


>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
           With Alpha-Naphthoflavone
          Length = 495

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 121 LLSAIGSYFSFFTLAYIGTLLS-------ITVPALYSRFEARVDRYCGMIHKSISQHYKV 173
           +LS + +   F   A  G  L        +  PAL  RF+A   R+   + K++ +HY+ 
Sbjct: 192 MLSLVKNTHEFVETASSGNPLDFFPILRYLPNPAL-QRFKAFNQRFLWFLQKTVQEHYQD 250

Query: 174 VDENVISRI 182
            D+N +  I
Sbjct: 251 FDKNSVRDI 259


>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
 pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
          Length = 201

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 96  LLLMAHDI--------TVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPA 147
           ++++A DI        TV ++FR   + + Y WLL+ +G Y  F  +  I     + V  
Sbjct: 1   MIILAFDIFGTVLDTSTVIQEFRN--KQLEYTWLLTIMGKYVEFEEITKITLRYILKVRG 58

Query: 148 LYSRFEARVDRYCGMIHKSISQHYKVVDE 176
             S+F+  ++++  +     +++ K + E
Sbjct: 59  EESKFDEELNKWKNLKAYEDTKYLKEISE 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.142    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,296,173
Number of Sequences: 62578
Number of extensions: 124902
Number of successful extensions: 316
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 3
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)