Query 029520
Match_columns 192
No_of_seqs 107 out of 427
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 14:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 5.8E-49 1.3E-53 324.1 20.3 189 1-189 38-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 3.2E-39 6.9E-44 254.0 -7.9 163 6-169 1-169 (169)
3 PF04842 DUF639: Plant protein 97.1 0.01 2.3E-07 56.0 13.2 162 6-188 506-677 (683)
4 KOG1792 Reticulon [Intracellul 94.8 0.12 2.7E-06 43.1 7.2 79 99-177 42-143 (230)
5 PF08372 PRT_C: Plant phosphor 93.8 0.52 1.1E-05 37.1 8.3 62 90-151 75-136 (156)
6 PF06398 Pex24p: Integral pero 92.0 2.1 4.6E-05 37.5 10.7 20 5-24 31-50 (359)
7 PF08372 PRT_C: Plant phosphor 85.1 0.59 1.3E-05 36.8 1.9 25 3-27 82-106 (156)
8 PF01484 Col_cuticle_N: Nemato 77.4 12 0.00026 23.1 5.7 34 139-172 15-51 (53)
9 PF10112 Halogen_Hydrol: 5-bro 77.0 22 0.00048 28.5 8.5 74 112-186 14-98 (199)
10 PF01594 UPF0118: Domain of un 71.6 62 0.0013 27.4 12.2 59 118-176 130-189 (327)
11 PF02453 Reticulon: Reticulon; 70.7 1.6 3.4E-05 33.6 0.4 22 6-27 100-121 (169)
12 PF10256 Erf4: Golgin subfamil 61.3 61 0.0013 23.6 8.0 20 77-100 30-49 (118)
13 PF06055 ExoD: Exopolysacchari 57.9 97 0.0021 24.9 8.6 41 62-102 68-112 (187)
14 PF13677 MotB_plug: Membrane M 57.5 33 0.00072 22.1 4.7 32 120-155 17-48 (58)
15 PF04842 DUF639: Plant protein 57.3 1.8E+02 0.0038 28.3 11.2 56 94-153 500-555 (683)
16 KOG3488 Dolichol phosphate-man 52.9 34 0.00074 23.4 4.2 35 99-133 38-72 (81)
17 COG0053 MMT1 Predicted Co/Zn/C 51.5 1.6E+02 0.0034 25.4 10.4 117 39-157 83-209 (304)
18 PF11696 DUF3292: Protein of u 50.9 59 0.0013 31.2 6.9 51 74-124 85-139 (642)
19 PF13198 DUF4014: Protein of u 50.8 62 0.0013 22.1 5.2 35 136-170 35-69 (72)
20 KOG3415 Putative Rab5-interact 49.2 93 0.002 23.3 6.4 19 107-125 106-124 (129)
21 PF07234 DUF1426: Protein of u 40.0 64 0.0014 23.5 4.2 26 124-149 17-42 (117)
22 TIGR02872 spore_ytvI sporulati 37.0 2.6E+02 0.0056 23.6 13.5 6 169-174 196-201 (341)
23 PRK11677 hypothetical protein; 35.8 1.9E+02 0.0042 22.1 6.6 9 151-159 47-55 (134)
24 PF10444 Nbl1_Borealin_N: Nbl1 34.8 71 0.0015 20.5 3.6 37 149-185 7-46 (59)
25 PHA02677 hypothetical protein; 32.4 1.2E+02 0.0026 22.3 4.6 33 131-163 5-37 (108)
26 PRK06433 NADH dehydrogenase su 31.5 95 0.0021 21.9 4.0 38 9-46 22-60 (88)
27 PF12548 DUF3740: Sulfatase pr 29.7 1.6E+02 0.0035 22.8 5.3 44 141-185 96-139 (145)
28 KOG1726 HVA22/DP1 gene product 27.8 3.6E+02 0.0078 22.5 8.8 33 150-182 94-126 (225)
29 KOG0058 Peptide exporter, ABC 27.5 6E+02 0.013 25.0 10.0 77 80-170 253-329 (716)
30 PF05062 RICH: RICH domain; I 27.0 1.3E+02 0.0029 21.0 4.0 25 149-173 4-28 (82)
31 PF06881 Elongin_A: RNA polyme 24.9 1.3E+02 0.0029 21.6 4.0 33 144-176 64-96 (109)
32 PHA03419 E4 protein; Provision 24.8 1.5E+02 0.0031 24.3 4.4 26 149-174 171-196 (200)
33 PHA03418 hypothetical E4 prote 23.5 1.6E+02 0.0035 24.5 4.5 27 148-174 200-226 (230)
34 PF08285 DPM3: Dolichol-phosph 23.3 2.1E+02 0.0045 20.3 4.6 44 119-164 42-85 (91)
35 PF15125 TMEM238: TMEM238 prot 23.0 47 0.001 22.2 1.1 17 36-52 28-44 (65)
36 COG4537 ComGC Competence prote 22.9 2.7E+02 0.0059 20.4 5.1 41 133-173 22-62 (107)
37 COG3887 Predicted signaling pr 21.9 7.3E+02 0.016 24.0 10.1 58 124-185 30-87 (655)
38 COG5038 Ca2+-dependent lipid-b 21.4 1.2E+02 0.0027 31.2 4.1 81 14-100 153-233 (1227)
39 PTZ00443 Thioredoxin domain-co 21.2 4E+02 0.0087 21.9 6.6 28 79-106 151-178 (224)
40 PRK10945 gene expression modul 21.1 99 0.0021 21.1 2.4 39 144-185 23-66 (72)
41 COG2165 PulG Type II secretory 20.2 3.3E+02 0.0072 19.4 6.3 41 132-172 17-58 (149)
42 KOG4069 Uncharacterized conser 20.1 2.6E+02 0.0057 21.4 4.7 34 138-171 85-118 (154)
43 TIGR00821 EII-GUT PTS system, 20.1 3E+02 0.0065 22.1 5.3 49 30-91 14-62 (181)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-49 Score=324.09 Aligned_cols=189 Identities=39% Similarity=0.722 Sum_probs=181.8
Q ss_pred CCCCccceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCC-ceee
Q 029520 1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLE--SLP-ELEV 77 (192)
Q Consensus 1 lg~g~v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~--~~p-~~~i 77 (192)
+|||+++|+++|||+|.||.++++++++|++|+..+|+.++++|+++++.+.+.|.|.+...+++.+++| ..| ++++
T Consensus 38 lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~i 117 (230)
T KOG1792|consen 38 LGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITI 117 (230)
T ss_pred CCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeec
Confidence 6899999999999999999999999999999999999999999999999999999999988788823666 678 9999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHH
Q 029520 78 SEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVD 157 (192)
Q Consensus 78 see~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID 157 (192)
|||.+++.+++++.++|+.++++|++++++|+.+++|+++.||++|++|+|||++|++|+|++++||+|++||+|||+||
T Consensus 118 pee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID 197 (230)
T KOG1792|consen 118 PEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID 197 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 029520 158 RYCGMIHKSISQHYKVVDENVISRIPRTLSKD 189 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~k~~~kip~~~~~~ 189 (192)
+++++++++.+++|+++++|+.+|||+++.++
T Consensus 198 ~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 198 PYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 99999999999999999999999999987664
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=3.2e-39 Score=253.98 Aligned_cols=163 Identities=32% Similarity=0.519 Sum_probs=45.8
Q ss_pred cceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCceeecH
Q 029520 6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQL------ESLPELEVSE 79 (192)
Q Consensus 6 v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~------~~~p~~~ise 79 (192)
|+|+++||||++||.+|++++++|++++++++|++|++|+++++.+++.+++....+.++ +++ ++.++.++||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLS-RSPKGPFKEPLDYDLEISE 79 (169)
T ss_dssp ----------------------------------------------------THCCCTCC-HHHHCTTHHHHCHHHHHCC
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccCCccccccccH
Confidence 689999999999999999999999999999999999999999999998888777666555 332 2334789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHH
Q 029520 80 EMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRY 159 (192)
Q Consensus 80 e~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~ 159 (192)
|+++++++.+.+.+|..++.+|+++.+||+..|+++++++|+++++|+++|++|+++++++++||+|.+||+||++||++
T Consensus 80 ~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~ 159 (169)
T PF02453_consen 80 ERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQY 159 (169)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 029520 160 CGMIHKSISQ 169 (192)
Q Consensus 160 ~~~~~~~~~~ 169 (192)
++++++++|+
T Consensus 160 ~~~~~~~~~k 169 (169)
T PF02453_consen 160 VAKVKEKVKK 169 (169)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999988875
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.15 E-value=0.01 Score=55.99 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=100.2
Q ss_pred cceeeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCCC--ce
Q 029520 6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNR--------QLESLP--EL 75 (192)
Q Consensus 6 v~dlllWrd~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~--------~~~~~p--~~ 75 (192)
+.++..|+||.+|...++.... .++. ..+.-+.-..++.+++..+|...... +|+ .+|+-. +-
T Consensus 506 ~~~l~~We~P~kt~~Fl~~~~~--iI~r----~wl~Y~~p~~Ll~~a~~Ml~~r~~~~-~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 506 LQKLASWEEPLKTLVFLALFLY--IIYR----GWLGYIFPAFLLFSAVFMLWLRYQGR-LGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHhhccCcchhHHHHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHhhhc-cCCccceEEecCCCCccHHHH
Confidence 4578899999999554443333 2322 22222222223333333355333211 112 111111 22
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHH
Q 029520 76 EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEAR 155 (192)
Q Consensus 76 ~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ 155 (192)
.+.-..+..-++......|-++-++|.|++...+..+-++++.|-.++.+-..+-+--++.+.++-.||-..=+.+
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr---- 654 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRR---- 654 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch----
Confidence 2344444555677788899999999999999999999999999999999999999999999999999986443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Q 029520 156 VDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 188 (192)
Q Consensus 156 ID~~~~~~~~~~~~~~~~~~~k~~~kip~~~~~ 188 (192)
+-.++..+++++-+ ..||-+|..
T Consensus 655 --~s~er~~RRlrEWW--------~sIPAaPV~ 677 (683)
T PF04842_consen 655 --ESSERFNRRLREWW--------DSIPAAPVQ 677 (683)
T ss_pred --hhHHHHHHHHHHHH--------hhCCccceE
Confidence 12334555555555 367776543
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.12 Score=43.07 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=63.7
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hHH
Q 029520 99 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EAR 155 (192)
Q Consensus 99 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~-----------------------q~~ 155 (192)
...+++.|||.+.++.+..+..++-.+-..++..++.....+++++++..+.++ |++
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~ 121 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF 121 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence 578999999999999988888777777788888888888888888777776655 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029520 156 VDRYCGMIHKSISQHYKVVDEN 177 (192)
Q Consensus 156 ID~~~~~~~~~~~~~~~~~~~k 177 (192)
++++.+.++.++|...++.++-
T Consensus 122 ~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 122 VLALASSLRVEINQALSELRDI 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887777653
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=93.83 E-value=0.52 Score=37.07 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhh
Q 029520 90 RVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSR 151 (192)
Q Consensus 90 ~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~ 151 (192)
...+....+.++.++.|+|+..|..+.+++++.+.+-....+..++.+..+-.++=|++-..
T Consensus 75 lgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~ 136 (156)
T PF08372_consen 75 LGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP 136 (156)
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence 33445567899999999999999999999888888877777777777777777777776553
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=92.05 E-value=2.1 Score=37.49 Aligned_cols=20 Identities=15% Similarity=0.529 Sum_probs=14.7
Q ss_pred ccceeeeccccchhHHHHHH
Q 029520 5 RTADVLLWKRRRVSFGVIVV 24 (192)
Q Consensus 5 ~v~dlllWrd~~~S~~v~~~ 24 (192)
.+.++++|+||..+-..+..
T Consensus 31 ~vl~il~W~~p~~t~~~L~l 50 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLL 50 (359)
T ss_pred HHHHeEEeCCCCcchHHHHH
Confidence 46789999999988544443
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=85.07 E-value=0.59 Score=36.76 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=19.6
Q ss_pred CCccceeeeccccchhHHHHHHHHH
Q 029520 3 GGRTADVLLWKRRRVSFGVIVVATV 27 (192)
Q Consensus 3 ~g~v~dlllWrd~~~S~~v~~~~~~ 27 (192)
|+++..++.||||..|+....+..+
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHH
Confidence 4577889999999999876665544
No 8
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=77.39 E-value=12 Score=23.13 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred HHHHHhhhHHHhh---chHHHHHHHHHHHHHHHHHHH
Q 029520 139 TLLSITVPALYSR---FEARVDRYCGMIHKSISQHYK 172 (192)
Q Consensus 139 ~~~~FTlP~~Ye~---~q~~ID~~~~~~~~~~~~~~~ 172 (192)
+.+++++|.+|.. -|++++.-++..+...++.++
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999964 344555555555655555554
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=77.03 E-value=22 Score=28.49 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 029520 112 FFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARV-----------DRYCGMIHKSISQHYKVVDENVIS 180 (192)
Q Consensus 112 slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~I-----------D~~~~~~~~~~~~~~~~~~~k~~~ 180 (192)
..-+++..|++++.|.-.+++--+.+|.++.+.+.....+.+..- .+++....++.+++...++ +...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~ 92 (199)
T PF10112_consen 14 GVLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIK 92 (199)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 334566677777776666666666666666665555544433222 1234444444555555543 4455
Q ss_pred hCCCCC
Q 029520 181 RIPRTL 186 (192)
Q Consensus 181 kip~~~ 186 (192)
++++..
T Consensus 93 ~i~~~~ 98 (199)
T PF10112_consen 93 RIRDLE 98 (199)
T ss_pred HcCCHH
Confidence 666543
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=71.59 E-value=62 Score=27.39 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH-HHHHHHHHHHHHH
Q 029520 118 YLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMI-HKSISQHYKVVDE 176 (192)
Q Consensus 118 ~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~~~~~-~~~~~~~~~~~~~ 176 (192)
.-++.+..++..+...=+.+..+..|-.=.=.++.++.+.+....- +++.++..+++++
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLLPPRNRERFEEILRKIDQ 189 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 4445555555555544444444444444344444444444444333 4444444444443
No 11
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=70.70 E-value=1.6 Score=33.62 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=11.3
Q ss_pred cceeeeccccchhHHHHHHHHH
Q 029520 6 TADVLLWKRRRVSFGVIVVATV 27 (192)
Q Consensus 6 v~dlllWrd~~~S~~v~~~~~~ 27 (192)
..+++.|+|++.|..++.++.+
T Consensus 100 ~~~l~~~~~~~~~l~~~~~l~~ 121 (169)
T PF02453_consen 100 LRRLVFGEDPKKSLKVFVVLYI 121 (169)
T ss_dssp HHCCCHCT-TTGGG--------
T ss_pred HHHHHcCccHHHHHHHHHHHHH
Confidence 4588999999999776655444
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=61.28 E-value=61 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=12.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Q 029520 77 VSEEMVNNAAASFRVKINYLLLMA 100 (192)
Q Consensus 77 isee~v~~~~~~~~~~~n~~l~~~ 100 (192)
+|++..+++.+ .+|..+...
T Consensus 30 is~~ef~~iI~----~IN~~l~~a 49 (118)
T PF10256_consen 30 ISPEEFEEIIN----TINQILKEA 49 (118)
T ss_pred CCHHHHHHHHH----HHHHHHHHH
Confidence 78887765544 666665443
No 13
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=57.91 E-value=97 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHhcCCCCCCCC----ceeecHHHHHHHHHHHHHHHHHHHHHHhh
Q 029520 62 AFRNNRQLESLP----ELEVSEEMVNNAAASFRVKINYLLLMAHD 102 (192)
Q Consensus 62 ~~~~~~~~~~~p----~~~isee~v~~~~~~~~~~~n~~l~~~r~ 102 (192)
|.+.|++.+-.| +-++|++++++..+.+.+.....-...|.
T Consensus 68 Qm~~Gr~~~WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~rp 112 (187)
T PF06055_consen 68 QMLLGRRHPWLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLRP 112 (187)
T ss_pred HHHcCCCCCCCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444558777777 66899999999999998888777655543
No 14
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=57.55 E-value=33 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHH
Q 029520 120 WLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEAR 155 (192)
Q Consensus 120 ~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ 155 (192)
|.++|- ++.|++..-|+++++.-.+=+...++
T Consensus 17 Wlvtya----DlmTLLl~fFVlL~s~s~~d~~k~~~ 48 (58)
T PF13677_consen 17 WLVTYA----DLMTLLLAFFVLLFSMSSVDKEKFEE 48 (58)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 555544 88899999999998877655444333
No 15
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=57.32 E-value=1.8e+02 Score=28.30 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhch
Q 029520 94 NYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 153 (192)
Q Consensus 94 n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q 153 (192)
.....+++.+..||||..|+-++++.+.+-|-| | ..=.+-.+++...+-+++.+|+
T Consensus 500 ~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~-w---l~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 500 IEIAKWLQKLASWEEPLKTLVFLALFLYIIYRG-W---LGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhh
Confidence 345579999999999999998766444333221 1 1222233334444445556666
No 16
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=52.93 E-value=34 Score=23.37 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=29.5
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHH
Q 029520 99 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFT 133 (192)
Q Consensus 99 ~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~t 133 (192)
..++.++-+++..+.-++++++.+..+|-++|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45677888999999999999999999998877654
No 17
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=51.53 E-value=1.6e+02 Score=25.40 Aligned_cols=117 Identities=16% Similarity=0.117 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCce--------eecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchH
Q 029520 39 FLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPEL--------EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFR 110 (192)
Q Consensus 39 ~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~~~p~~--------~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~ 110 (192)
+.+++.-++++...+..+|..+.+.++ .++++.|.. .+..+.+.++...+....|.-.-.....-.--|..
T Consensus 83 l~sl~~~~~i~~~g~~i~~~a~~~~~~-~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 83 LASLIVSILIFAAGFEILLEAIKRLIS-PQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 344444444444444557777777776 334343311 24455566666666666665433222222223888
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhh-hHHHhhchHHHH
Q 029520 111 LFFQVVAYLWLLSAIG-SYFSFFTLAYIGTLLSITV-PALYSRFEARVD 157 (192)
Q Consensus 111 ~slk~~~~L~~ls~lG-~~~s~~tll~~~~~~~FTl-P~~Ye~~q~~ID 157 (192)
.++-+.+++- ..+.| .|++...-+.+++..+.+. =.++|.-++.+|
T Consensus 162 ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d 209 (304)
T COG0053 162 TSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMD 209 (304)
T ss_pred HHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888777777 67777 5566555555555444443 345555555555
No 18
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=50.89 E-value=59 Score=31.23 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=33.8
Q ss_pred ceeecHHHHHHHHHH----HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Q 029520 74 ELEVSEEMVNNAAAS----FRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSA 124 (192)
Q Consensus 74 ~~~isee~v~~~~~~----~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~ 124 (192)
+-+.|.+....-.++ +..-+-.+..++.+|-+|+++..+.-+++..++..+
T Consensus 85 ~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~ 139 (642)
T PF11696_consen 85 DEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWL 139 (642)
T ss_pred cccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 345565555444444 445556677899999999999998876665444433
No 19
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=50.82 E-value=62 Score=22.05 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHH
Q 029520 136 YIGTLLSITVPALYSRFEARVDRYCGMIHKSISQH 170 (192)
Q Consensus 136 ~~~~~~~FTlP~~Ye~~q~~ID~~~~~~~~~~~~~ 170 (192)
.+..+...+.-.+.|+|.+.+-+..+..+.+++.+
T Consensus 35 l~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkinpy 69 (72)
T PF13198_consen 35 LFVWIIGKIIEPLFELYKDWFWNPFNALHNKINPY 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccccc
Confidence 33444555666677777776666666555555443
No 20
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.22 E-value=93 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.385 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 029520 107 KDFRLFFQVVAYLWLLSAI 125 (192)
Q Consensus 107 ~d~~~slk~~~~L~~ls~l 125 (192)
|-.+.++..+...|++.|-
T Consensus 106 EGf~asfa~FlvtWIi~Yt 124 (129)
T KOG3415|consen 106 EGFMASFALFLVTWIIFYT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666666766553
No 21
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=39.98 E-value=64 Score=23.50 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=21.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHH
Q 029520 124 AIGSYFSFFTLAYIGTLLSITVPALY 149 (192)
Q Consensus 124 ~lG~~~s~~tll~~~~~~~FTlP~~Y 149 (192)
++|..|--.|++|+-..++|-+|+--
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35777778899999999999999743
No 22
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=37.01 E-value=2.6e+02 Score=23.62 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029520 169 QHYKVV 174 (192)
Q Consensus 169 ~~~~~~ 174 (192)
...+++
T Consensus 196 ~i~~~i 201 (341)
T TIGR02872 196 NIFSEL 201 (341)
T ss_pred HHHHHH
Confidence 333333
No 23
>PRK11677 hypothetical protein; Provisional
Probab=35.84 E-value=1.9e+02 Score=22.05 Aligned_cols=9 Identities=0% Similarity=0.098 Sum_probs=4.0
Q ss_pred hchHHHHHH
Q 029520 151 RFEARVDRY 159 (192)
Q Consensus 151 ~~q~~ID~~ 159 (192)
+||.++..+
T Consensus 47 ~YkqeV~~H 55 (134)
T PRK11677 47 EYRQELVSH 55 (134)
T ss_pred HHHHHHHHH
Confidence 344444444
No 24
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=34.84 E-value=71 Score=20.54 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=26.1
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhCCCC
Q 029520 149 YSRFEARVDRYCGMIHKSISQHYKVVDENV---ISRIPRT 185 (192)
Q Consensus 149 Ye~~q~~ID~~~~~~~~~~~~~~~~~~~k~---~~kip~~ 185 (192)
-+.++.+++.-++..+.+.+.+.+.++..+ +.+||++
T Consensus 7 l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~ 46 (59)
T PF10444_consen 7 LQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKA 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 355677788888888888887777776644 6688875
No 25
>PHA02677 hypothetical protein; Provisional
Probab=32.35 E-value=1.2e+02 Score=22.27 Aligned_cols=33 Identities=15% Similarity=0.498 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH
Q 029520 131 FFTLAYIGTLLSITVPALYSRFEARVDRYCGMI 163 (192)
Q Consensus 131 ~~tll~~~~~~~FTlP~~Ye~~q~~ID~~~~~~ 163 (192)
|+-++|...+.=..+|.+-||-+.|=|.+..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999988887654
No 26
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=31.46 E-value=95 Score=21.85 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=22.3
Q ss_pred eeeccccchhHHHHHHHHHHH-HHHHhcCCchhHHHHHH
Q 029520 9 VLLWKRRRVSFGVIVVATVAW-LIFERSGLPFLSVCSDV 46 (192)
Q Consensus 9 lllWrd~~~S~~v~~~~~~~~-~l~~~~~~s~is~~~~~ 46 (192)
++.+||+-.|+..+......- .++...+..++.+.--+
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~ 60 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVL 60 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 457899999876555433321 24555677766554443
No 27
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=29.66 E-value=1.6e+02 Score=22.79 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029520 141 LSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 185 (192)
Q Consensus 141 ~~FTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~k~~~kip~~ 185 (192)
.++.=|.....++.+||+.++..+.+++++- .++.-+..+=|..
T Consensus 96 ~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LK-eiR~hLk~~RP~~ 139 (145)
T PF12548_consen 96 VIYQDPKAWKDHRLHIDHEIETLQDKIKNLK-EIRGHLKKKRPEE 139 (145)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchh
Confidence 4566788888999999999999999999884 3444444555554
No 28
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=27.79 E-value=3.6e+02 Score=22.50 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=24.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 029520 150 SRFEARVDRYCGMIHKSISQHYKVVDENVISRI 182 (192)
Q Consensus 150 e~~q~~ID~~~~~~~~~~~~~~~~~~~k~~~ki 182 (192)
.+||++||+.+..++++.-++...+-.|.++-.
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~ 126 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRALNYA 126 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999887777666655554433
No 29
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.45 E-value=6e+02 Score=24.96 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHH
Q 029520 80 EMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRY 159 (192)
Q Consensus 80 e~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk~~~~L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~ 159 (192)
+++..+.+++...+|.++...-.. +.-.+.++.+|+ ....+.++.+=..+.++++|-+|.+.+-+.
T Consensus 253 sD~~~vs~svs~nls~~lR~~~~~---------~g~~~~M~~~S~-----~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~ 318 (716)
T KOG0058|consen 253 SDTQIVSNSVSQNLSDGLRNLVQG---------FGGLGFMFSLSW-----RLTLVTLIVVPIVALVAKIYGKYLRKLSKQ 318 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---------HHhHHHHhhhhH-----HHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777433222 222333444433 222233344445556677887777777666
Q ss_pred HHHHHHHHHHH
Q 029520 160 CGMIHKSISQH 170 (192)
Q Consensus 160 ~~~~~~~~~~~ 170 (192)
...+..+.++.
T Consensus 319 ~Q~a~A~a~~v 329 (716)
T KOG0058|consen 319 TQDALARANQV 329 (716)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 30
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=27.00 E-value=1.3e+02 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.4
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHH
Q 029520 149 YSRFEARVDRYCGMIHKSISQHYKV 173 (192)
Q Consensus 149 Ye~~q~~ID~~~~~~~~~~~~~~~~ 173 (192)
.+++.++||+|++++...++.+..+
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~k 28 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLDK 28 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999988887555443
No 31
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=24.93 E-value=1.3e+02 Score=21.62 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=28.5
Q ss_pred hhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 029520 144 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDE 176 (192)
Q Consensus 144 TlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~ 176 (192)
+.=.+|.+|+++-|+......+++++.++..++
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667889999999999999999999988877653
No 32
>PHA03419 E4 protein; Provisional
Probab=24.85 E-value=1.5e+02 Score=24.27 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=23.5
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHH
Q 029520 149 YSRFEARVDRYCGMIHKSISQHYKVV 174 (192)
Q Consensus 149 Ye~~q~~ID~~~~~~~~~~~~~~~~~ 174 (192)
-.++++++|+.+..+.+.+++++.++
T Consensus 171 L~kWE~~f~qLV~~I~~DL~~YW~kL 196 (200)
T PHA03419 171 LQKWEQQFDQLVDNIVVDLRDYWQRL 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45889999999999999999999876
No 33
>PHA03418 hypothetical E4 protein; Provisional
Probab=23.49 E-value=1.6e+02 Score=24.55 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHH
Q 029520 148 LYSRFEARVDRYCGMIHKSISQHYKVV 174 (192)
Q Consensus 148 ~Ye~~q~~ID~~~~~~~~~~~~~~~~~ 174 (192)
.-.++++++|+.+..+.+.++.++.++
T Consensus 200 lL~kWE~~f~qLV~~I~~DL~dYW~kL 226 (230)
T PHA03418 200 LLGTWEESFRQLVEDIQEDLDDYWRKL 226 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345889999999999999999999876
No 34
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.32 E-value=2.1e+02 Score=20.29 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHH
Q 029520 119 LWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIH 164 (192)
Q Consensus 119 L~~ls~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~~~~~~ 164 (192)
.|.+-..|++ +..++.| |+.-.=..|-.|+.=|+||++.=+..+
T Consensus 42 ~~~Lv~fG~Y-sl~~lgy-~v~tFnDcpeA~~eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 42 FYALVSFGCY-SLFTLGY-GVATFNDCPEAAKELQKEIKEAKADLR 85 (91)
T ss_pred HHHHHHHHHH-HHHHHHH-hhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555555555 3333322 333334567777777777777654443
No 35
>PF15125 TMEM238: TMEM238 protein family
Probab=22.97 E-value=47 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=7.9
Q ss_pred CCchhHHHHHHHHHHHH
Q 029520 36 GLPFLSVCSDVLLLLIV 52 (192)
Q Consensus 36 ~~s~is~~~~~~l~~l~ 52 (192)
+..+=.++-|.+-+.+.
T Consensus 28 ~l~f~D~lvY~Galiif 44 (65)
T PF15125_consen 28 PLDFYDFLVYTGALIIF 44 (65)
T ss_pred chhHHHHHHHHhHHHHH
Confidence 44444555555444433
No 36
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.92 E-value=2.7e+02 Score=20.36 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 029520 133 TLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKV 173 (192)
Q Consensus 133 tll~~~~~~~FTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~ 173 (192)
-|+++.++++.++|-+-.+++..=|.=++.....++.|.+-
T Consensus 22 VLlIISiLlLl~iPNltKq~~~i~~kGc~A~vkmV~sQ~~~ 62 (107)
T COG4537 22 VLLIISILLLLFIPNLTKQKEVIQDKGCEAVVKMVESQAEA 62 (107)
T ss_pred HHHHHHHHHHHHccchhhhHHHHhcchHHHHHHHHHHHHHH
Confidence 36677788899999999988877777677666666666443
No 37
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=21.86 E-value=7.3e+02 Score=23.99 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029520 124 AIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 185 (192)
Q Consensus 124 ~lG~~~s~~tll~~~~~~~FTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~k~~~kip~~ 185 (192)
.-|+|.+...++.++++..|.+-..+.-||+..-.+++....++++.. +..+..+|-+
T Consensus 30 ~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~~~----~~al~nmPiG 87 (655)
T COG3887 30 SFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEKSL----EEALTNMPIG 87 (655)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCce
Confidence 456666666666666666666666666666666668888777777664 3445677765
No 38
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=21.42 E-value=1.2e+02 Score=31.17 Aligned_cols=81 Identities=25% Similarity=0.266 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeecHHHHHHHHHHHHHHH
Q 029520 14 RRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRVKI 93 (192)
Q Consensus 14 d~~~S~~v~~~~~~~~~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~~~p~~~isee~v~~~~~~~~~~~ 93 (192)
|+.++-.++.+..++=++|-..++++.+++.-++ ...++|+.-...+. |..+..-.-+.++|..+.-. .-.+++
T Consensus 153 ~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~----~~~~vY~~~~~rv~-rnird~v~~~~~~ek~~nd~-ESveWL 226 (1227)
T COG5038 153 DWYQSVAIVLIGSVASWIFGYLGFSFASLFFIIL----VTMYVYRTCIKRVR-RNIRDLVQQELSEEKLENDY-ESVEWL 226 (1227)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcch-hHHHHH
Q ss_pred HHHHHHH
Q 029520 94 NYLLLMA 100 (192)
Q Consensus 94 n~~l~~~ 100 (192)
|.+++++
T Consensus 227 NtfL~Kf 233 (1227)
T COG5038 227 NTFLQKF 233 (1227)
T ss_pred HHHHHhh
No 39
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=21.17 E-value=4e+02 Score=21.90 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 029520 79 EEMVNNAAASFRVKINYLLLMAHDITVG 106 (192)
Q Consensus 79 ee~v~~~~~~~~~~~n~~l~~~r~l~~~ 106 (192)
++.+.+..+.+.+-.+.+..-+++.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (224)
T PTZ00443 151 LSFFALTIDFFVSGTNEALRIYDAAFAG 178 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444444444
No 40
>PRK10945 gene expression modulator; Provisional
Probab=21.09 E-value=99 Score=21.12 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=21.7
Q ss_pred hhhHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029520 144 TVPALYSRFEARVDR-----YCGMIHKSISQHYKVVDENVISRIPRT 185 (192)
Q Consensus 144 TlP~~Ye~~q~~ID~-----~~~~~~~~~~~~~~~~~~k~~~kip~~ 185 (192)
|+-+++|++++.+.. ..+.+-++..+.. .-|+.+|+|+.
T Consensus 23 TLEkvie~~~~~L~~~E~~~f~~AaDHR~AEL~---~~KLyDkVP~~ 66 (72)
T PRK10945 23 TLERVIEKNKYELSDDELAVFYSAADHRLAELT---MNKLYDKIPSS 66 (72)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH---hchhHhhcCHH
Confidence 567777777765543 2333333333333 23677888864
No 41
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.23 E-value=3.3e+02 Score=19.37 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhHHHhhchHH-HHHHHHHHHHHHHHHHH
Q 029520 132 FTLAYIGTLLSITVPALYSRFEAR-VDRYCGMIHKSISQHYK 172 (192)
Q Consensus 132 ~tll~~~~~~~FTlP~~Ye~~q~~-ID~~~~~~~~~~~~~~~ 172 (192)
..+.++|++++..+|.+....+.. ..+........++.+.+
T Consensus 17 Vvl~Iigil~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (149)
T COG2165 17 VVLAIIGILAALALPSLQGSIDKAKRLEAAQQALRVIRLALE 58 (149)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999988777766 55554444444444443
No 42
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=2.6e+02 Score=21.44 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHHH
Q 029520 138 GTLLSITVPALYSRFEARVDRYCGMIHKSISQHY 171 (192)
Q Consensus 138 ~~~~~FTlP~~Ye~~q~~ID~~~~~~~~~~~~~~ 171 (192)
|+++.||.-.+|..-+..-.+.+.++++.++.+-
T Consensus 85 gclgC~TaY~iy~ctethYek~L~klskfl~~qN 118 (154)
T KOG4069|consen 85 GCLGCFTAYAIYACTETHYEKKLDKLSKFLNRQN 118 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567777777777766666666666666666663
No 43
>TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIC component.
Probab=20.07 E-value=3e+02 Score=22.09 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceeecHHHHHHHHHHHHH
Q 029520 30 LIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNNRQLESLPELEVSEEMVNNAAASFRV 91 (192)
Q Consensus 30 ~l~~~~~~s~is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~~~p~~~isee~v~~~~~~~~~ 91 (192)
-+|...+-++++.+.-+.=..++.+-.-+.+..++. ||++++.|+.+..
T Consensus 14 gLFq~GGetF~g~vtgIiP~li~LL~~mnaiI~liG-------------eeRv~~~A~~~~~ 62 (181)
T TIGR00821 14 GLFQKGGEVFVGMVTGILPLLISLLVIMNALIAFIG-------------QDRIERFAQFCAG 62 (181)
T ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHcC
Confidence 578888889999988876655554444444566777 8888888886654
Done!