Query 029520
Match_columns 192
No_of_seqs 107 out of 427
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.8 1E-09 3.4E-14 75.4 0.2 60 54-114 12-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 98.2 1.4E-08 4.7E-13 66.4 -4.8 51 57-108 3-60 (60)
3 2l8s_A Integrin alpha-1; trans 34.9 80 0.0027 19.4 4.7 28 40-70 14-41 (54)
4 1oef_A Apolipoprotein E; glyco 34.7 30 0.001 17.7 2.3 21 156-176 3-23 (26)
5 3vou_A ION transport 2 domain 33.8 1.3E+02 0.0044 21.5 7.1 39 143-184 105-143 (148)
6 2knc_A Integrin alpha-IIB; tra 29.2 1E+02 0.0035 18.9 4.6 28 40-70 17-44 (54)
7 2wuj_A Septum site-determining 24.6 1E+02 0.0035 18.8 3.9 24 152-175 21-44 (57)
8 1w53_A Phosphoserine phosphata 24.4 91 0.0031 20.9 3.8 37 144-180 3-39 (84)
9 1pu1_A Hypothetical protein MT 17.5 45 0.0015 23.0 1.1 30 145-174 63-92 (94)
10 1oeg_A Apolipoprotein E; siali 17.5 61 0.0021 17.0 1.4 17 160-176 3-19 (26)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.75 E-value=1e-09 Score=75.45 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=55.8
Q ss_pred HH-HHHHHHHHhcCCCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 029520 54 MF-FRANFAAFRNNRQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ 114 (192)
Q Consensus 54 ~f-l~~~~~~~~~~~~~~~~p-------~~~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d~~~slk 114 (192)
.| +|+++.+.++ ++++.+| |+.+|+|+++++++.+..++|.+++++|+++++||+.+|+|
T Consensus 12 sfRiYk~vlqavq-Ktd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 12 GMRIYKGVIQAIQ-KSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp -CTHHHHTHHHHH-CTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHH-hCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 45 8999999999 8888888 99999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=98.24 E-value=1.4e-08 Score=66.42 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCCCCCC-------ceeecHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 029520 57 RANFAAFRNNRQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 108 (192)
Q Consensus 57 ~~~~~~~~~~~~~~~~p-------~~~isee~v~~~~~~~~~~~n~~l~~~r~l~~~~d 108 (192)
|+++.+.++ +++..+| |+.+|+|+++++++.+..++|.+++.+|++++++|
T Consensus 3 Yk~vlqavq-Kt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQ-KSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHH-HHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHH-hCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 455666777 7777777 99999999999999999999999999999999987
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.87 E-value=80 Score=19.44 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 029520 40 LSVCSDVLLLLIVLMFFRANFAAFRNNRQLE 70 (192)
Q Consensus 40 is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~ 70 (192)
+|+++-++++++++..+|+ .++++ |..+
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFK-R~~~ 41 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFK-RPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTT-SCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCccc-CCCc
Confidence 4666667777766666775 35666 5443
No 4
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=34.65 E-value=30 Score=17.73 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029520 156 VDRYCGMIHKSISQHYKVVDE 176 (192)
Q Consensus 156 ID~~~~~~~~~~~~~~~~~~~ 176 (192)
++.+.+.++.++.+.++++++
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 567788888888888877753
No 5
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=33.77 E-value=1.3e+02 Score=21.53 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=28.4
Q ss_pred HhhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 029520 143 ITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPR 184 (192)
Q Consensus 143 FTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~k~~~kip~ 184 (192)
+....+.++.+++.|..-....++.++..+.+++ .+.|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~---~~~~~ 143 (148)
T 3vou_A 105 VQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE---HSRQG 143 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCc
Confidence 4556778888888899888888888877666664 35555
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.19 E-value=1e+02 Score=18.91 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 029520 40 LSVCSDVLLLLIVLMFFRANFAAFRNNRQLE 70 (192)
Q Consensus 40 is~~~~~~l~~l~~~fl~~~~~~~~~~~~~~ 70 (192)
+|+++-++++++++..+|+ .++++ |..+
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFk-R~~~ 44 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFK-RNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTT-TTCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCccc-CCCC
Confidence 4666666666666666775 35666 4443
No 7
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.60 E-value=1e+02 Score=18.81 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 029520 152 FEARVDRYCGMIHKSISQHYKVVD 175 (192)
Q Consensus 152 ~q~~ID~~~~~~~~~~~~~~~~~~ 175 (192)
.++++|.++..+.......++...
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~ 44 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKT 44 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999888888877654
No 8
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=24.41 E-value=91 Score=20.90 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=26.9
Q ss_pred hhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029520 144 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 180 (192)
Q Consensus 144 TlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~k~~~ 180 (192)
+.+.+.++|++.+|.++..-.++.-.+-+++...++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 3567889999999999887777666665666555543
No 9
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=17.48 E-value=45 Score=22.96 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=20.3
Q ss_pred hhHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 029520 145 VPALYSRFEARVDRYCGMIHKSISQHYKVV 174 (192)
Q Consensus 145 lP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~ 174 (192)
+|.+-+--++.||++++.++.++.++...+
T Consensus 63 ~d~lsk~D~~ivdeAi~~AY~~ie~yl~d~ 92 (94)
T 1pu1_A 63 LDELSDADPGIVDEAVDAAYRSLESFLDGF 92 (94)
T ss_dssp ECTTCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556778888888877777776544
No 10
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=17.47 E-value=61 Score=16.96 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029520 160 CGMIHKSISQHYKVVDE 176 (192)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (192)
+++++++.....+|+++
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555444443
Done!