Query 029520
Match_columns 192
No_of_seqs 107 out of 427
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 23:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029520.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029520hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 33.7 84 0.0062 23.1 9.8 30 138-167 142-175 (262)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 29.8 27 0.002 20.3 3.6 30 74-103 27-56 (69)
3 d1cjba_ c.61.1.1 (A:) Hypoxant 25.1 13 0.00092 27.7 1.5 30 142-171 28-64 (228)
4 d2je6a2 d.101.1.1 (A:192-275) 20.6 66 0.0048 19.1 4.3 25 152-176 56-80 (84)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 17.2 59 0.0043 16.8 2.7 20 133-152 15-34 (37)
6 d1z7ga1 c.61.1.1 (A:4-217) Hyp 16.3 28 0.0021 25.3 1.8 30 142-171 17-53 (214)
7 d2gsva1 a.23.7.1 (A:3-69) Hypo 15.2 40 0.0029 19.8 1.9 35 142-176 2-37 (67)
8 d2nn6e2 d.101.1.1 (E:192-285) 14.6 1.3E+02 0.0094 18.2 4.9 27 152-178 57-83 (94)
9 d2gaua1 a.4.5.4 (A:152-232) Tr 14.5 1E+02 0.0076 17.8 4.0 30 74-103 27-56 (81)
10 d1ft9a1 a.4.5.4 (A:134-213) CO 12.6 1E+02 0.0074 17.9 3.5 30 74-103 28-57 (80)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.70 E-value=84 Score=23.14 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHhhhHH----HhhchHHHHHHHHHHHHHH
Q 029520 138 GTLLSITVPAL----YSRFEARVDRYCGMIHKSI 167 (192)
Q Consensus 138 ~~~~~FTlP~~----Ye~~q~~ID~~~~~~~~~~ 167 (192)
....+-|+|-+ |++++++.|+.++.+...+
T Consensus 142 ~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~ 175 (262)
T d1h2vc1 142 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYL 175 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33556666654 6677777777776665544
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.81 E-value=27 Score=20.26 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=27.3
Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029520 74 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 103 (192)
Q Consensus 74 ~~~isee~v~~~~~~~~~~~n~~l~~~r~l 103 (192)
++.+++++.-.++..-++.+|..++.+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 678999999999999999999999988764
No 3
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=25.09 E-value=13 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=23.3
Q ss_pred HHhhhHHHhhc-------hHHHHHHHHHHHHHHHHHH
Q 029520 142 SITVPALYSRF-------EARVDRYCGMIHKSISQHY 171 (192)
Q Consensus 142 ~FTlP~~Ye~~-------q~~ID~~~~~~~~~~~~~~ 171 (192)
+|++|-.|++| +++|++.++..-.++++.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 58999999987 5677777777777776665
No 4
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.63 E-value=66 Score=19.05 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 029520 152 FEARVDRYCGMIHKSISQHYKVVDE 176 (192)
Q Consensus 152 ~q~~ID~~~~~~~~~~~~~~~~~~~ 176 (192)
-++++++.++.+.++.++.++.+++
T Consensus 56 ~~~~i~~~i~~A~~~~~~l~~~l~~ 80 (84)
T d2je6a2 56 SLQDIDQAENTARSTAVKLLEELKK 80 (84)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999888764
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.20 E-value=59 Score=16.84 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhHHHhhc
Q 029520 133 TLAYIGTLLSITVPALYSRF 152 (192)
Q Consensus 133 tll~~~~~~~FTlP~~Ye~~ 152 (192)
|-+|.|.++.|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665544
No 6
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.26 E-value=28 Score=25.28 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=23.9
Q ss_pred HHhhhHHHhhc-------hHHHHHHHHHHHHHHHHHH
Q 029520 142 SITVPALYSRF-------EARVDRYCGMIHKSISQHY 171 (192)
Q Consensus 142 ~FTlP~~Ye~~-------q~~ID~~~~~~~~~~~~~~ 171 (192)
+|++|.-|+++ +++|.+.++..-.++.+.|
T Consensus 17 ~f~~p~~~~~~~~~ilis~~~I~~~I~rLA~qI~~~y 53 (214)
T d1z7ga1 17 LFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEM 53 (214)
T ss_dssp GSCCCGGGTTTEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 57899999887 7788888888777777665
No 7
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=15.22 E-value=40 Score=19.79 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=19.9
Q ss_pred HHhhhHHHhhchHHHHHHHH-HHHHHHHHHHHHHHH
Q 029520 142 SITVPALYSRFEARVDRYCG-MIHKSISQHYKVVDE 176 (192)
Q Consensus 142 ~FTlP~~Ye~~q~~ID~~~~-~~~~~~~~~~~~~~~ 176 (192)
+||+|.+-|..++.|...=+ .-.+.+|++|..+..
T Consensus 2 LFsv~~fi~Nf~~~i~mn~~~dkIhAmNaYYrsVvs 37 (67)
T d2gsva1 2 LFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVS 37 (67)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 48888888887776654311 222334555555443
No 8
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.58 E-value=1.3e+02 Score=18.19 Aligned_cols=27 Identities=4% Similarity=-0.221 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029520 152 FEARVDRYCGMIHKSISQHYKVVDENV 178 (192)
Q Consensus 152 ~q~~ID~~~~~~~~~~~~~~~~~~~k~ 178 (192)
..++|++.++.+....++..+.+++.+
T Consensus 57 ~~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 57 DPESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999988887654
No 9
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=14.53 E-value=1e+02 Score=17.78 Aligned_cols=30 Identities=10% Similarity=-0.106 Sum_probs=26.2
Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029520 74 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 103 (192)
Q Consensus 74 ~~~isee~v~~~~~~~~~~~n~~l~~~r~l 103 (192)
++.+|+++.-.++..-++.+|..+..+++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999888764
No 10
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.63 E-value=1e+02 Score=17.94 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=25.7
Q ss_pred ceeecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029520 74 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 103 (192)
Q Consensus 74 ~~~isee~v~~~~~~~~~~~n~~l~~~r~l 103 (192)
.+.+|++..-.+++.-++.+|..+..+++-
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~ 57 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKE 57 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456789999999999999999999888764
Done!