BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029521
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 34.3 bits (77), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 25  EGCLEQERSALLQLKHFFNDDHRLQNWVDDENYSDCC--QWERVECNNTTG--RVIKLDL 80
           E C  Q++ ALLQ+K    +   L +W+     +DCC   W  V C+  T   RV  LDL
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 81  TQTRKWESAEWYMNASLFTPFQQLESLDLIG-NNIAGCVENEGLERLSRLNNLKFLH 136
           +        + Y   S       L  L + G NN+ G +    + +L++L+ L   H
Sbjct: 58  S---GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITH 110


>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
           Gamma Heterodimer From Sulfolobus Solfataricus Complexed
           With Gdpnp
 pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
           Initiation Factor 2 From Sulfolobus Solfataricus .
 pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
           Aif2:gdpnp:methionylated Initiator Trna
          Length = 266

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 45  DHRLQNWVDDENYSDCCQWERVECNNTTGRVI--KLDLTQTRKWESAEWYMNASLFTPFQ 102
           D  L+   DDE      QW++++  +    ++  KL L++   WE   W + A    P  
Sbjct: 79  DVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPIT 138

Query: 103 QLESLDLIGNNI---AGCVE 119
            +E     G  I   AG  E
Sbjct: 139 AIEKAVKEGEKILIDAGVPE 158


>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
 pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
 pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
           Double-Stranded Rna
          Length = 697

 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 93  MNASLFTPFQQLESLDLIGNNIAGCVEN--EGLERLSRLN 130
           ++ S F P + L  LDL  NNIA   E+  EGLE L  L+
Sbjct: 471 ISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILD 510


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,654,578
Number of Sequences: 62578
Number of extensions: 202549
Number of successful extensions: 375
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)