Query 029521
Match_columns 192
No_of_seqs 211 out of 2272
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 14:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.8 9.9E-18 2.2E-22 148.8 12.3 139 25-173 367-509 (623)
2 PLN00113 leucine-rich repeat r 99.7 1.3E-17 2.9E-22 154.5 13.1 135 28-171 27-181 (968)
3 PLN00113 leucine-rich repeat r 99.2 4.4E-11 9.6E-16 111.2 6.6 78 96-177 517-594 (968)
4 PF13855 LRR_8: Leucine rich r 99.1 1.3E-10 2.7E-15 72.5 3.8 61 102-166 1-61 (61)
5 PLN03150 hypothetical protein; 98.8 6.1E-09 1.3E-13 93.0 7.0 91 73-172 442-533 (623)
6 KOG0617 Ras suppressor protein 98.8 2.5E-10 5.4E-15 85.1 -1.5 84 72-167 32-115 (264)
7 PF14580 LRR_9: Leucine-rich r 98.8 2.8E-09 6E-14 80.4 3.7 82 74-167 43-126 (175)
8 PF13855 LRR_8: Leucine rich r 98.8 4.7E-09 1E-13 65.3 4.0 60 74-142 2-61 (61)
9 PF08263 LRRNT_2: Leucine rich 98.7 4.6E-08 9.9E-13 56.6 4.4 38 29-69 2-43 (43)
10 KOG0444 Cytoskeletal regulator 98.6 2.8E-09 6E-14 93.0 -1.9 95 73-187 222-316 (1255)
11 PF14580 LRR_9: Leucine-rich r 98.6 2.8E-08 6E-13 75.0 3.5 94 73-181 19-114 (175)
12 KOG4237 Extracellular matrix p 98.6 6.5E-09 1.4E-13 86.1 -0.2 87 72-167 66-153 (498)
13 KOG4194 Membrane glycoprotein 98.5 6.4E-09 1.4E-13 89.9 -2.8 70 98-171 313-382 (873)
14 KOG0617 Ras suppressor protein 98.5 4.5E-09 9.8E-14 78.5 -3.3 90 73-167 56-163 (264)
15 KOG0472 Leucine-rich repeat pr 98.5 6E-08 1.3E-12 80.8 2.6 86 74-167 436-541 (565)
16 KOG4194 Membrane glycoprotein 98.4 1.5E-07 3.2E-12 81.7 3.0 91 72-166 124-233 (873)
17 PF12799 LRR_4: Leucine Rich r 98.4 5E-07 1.1E-11 52.5 3.6 37 130-167 1-37 (44)
18 PRK15387 E3 ubiquitin-protein 98.3 9.8E-07 2.1E-11 80.2 4.7 41 131-172 423-463 (788)
19 KOG4579 Leucine-rich repeat (L 98.2 9.7E-08 2.1E-12 68.8 -1.9 98 72-181 52-149 (177)
20 KOG0618 Serine/threonine phosp 98.2 1.3E-07 2.9E-12 85.4 -1.6 84 72-167 382-465 (1081)
21 KOG1259 Nischarin, modulator o 98.2 3.5E-07 7.5E-12 73.9 0.8 94 74-182 308-401 (490)
22 KOG0472 Leucine-rich repeat pr 98.2 7E-07 1.5E-11 74.5 2.1 92 74-171 389-521 (565)
23 KOG0444 Cytoskeletal regulator 98.1 6.6E-07 1.4E-11 78.6 0.3 69 97-171 73-142 (1255)
24 KOG4237 Extracellular matrix p 98.0 1.7E-06 3.8E-11 72.0 1.4 71 97-171 269-339 (498)
25 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 47.7 3.4 37 102-143 1-37 (44)
26 PLN03210 Resistant to P. syrin 98.0 2.1E-05 4.6E-10 75.1 8.4 88 74-172 612-699 (1153)
27 KOG1259 Nischarin, modulator o 97.9 2E-06 4.3E-11 69.6 0.2 81 74-167 285-365 (490)
28 cd00116 LRR_RI Leucine-rich re 97.9 8.2E-06 1.8E-10 66.4 3.1 90 73-167 137-234 (319)
29 KOG0618 Serine/threonine phosp 97.9 3.9E-06 8.4E-11 76.2 0.6 86 74-172 46-131 (1081)
30 PRK15370 E3 ubiquitin-protein 97.9 3.5E-05 7.5E-10 70.3 6.6 86 73-168 199-297 (754)
31 PRK15387 E3 ubiquitin-protein 97.9 3.8E-05 8.2E-10 70.1 6.8 92 73-171 302-418 (788)
32 cd00116 LRR_RI Leucine-rich re 97.7 1.6E-05 3.4E-10 64.7 1.8 69 99-167 133-206 (319)
33 PRK15370 E3 ubiquitin-protein 97.7 8.7E-05 1.9E-09 67.7 6.7 89 73-172 178-279 (754)
34 PLN03210 Resistant to P. syrin 97.7 0.00013 2.8E-09 69.8 7.3 88 72-171 633-721 (1153)
35 COG4886 Leucine-rich repeat (L 97.6 3.6E-05 7.8E-10 64.9 3.2 87 74-173 117-204 (394)
36 KOG4658 Apoptotic ATPase [Sign 97.6 2E-05 4.4E-10 72.9 1.4 88 74-171 546-635 (889)
37 KOG0531 Protein phosphatase 1, 97.5 7.1E-05 1.5E-09 63.9 2.4 83 72-168 94-176 (414)
38 KOG4579 Leucine-rich repeat (L 97.5 4.1E-06 8.9E-11 60.5 -4.3 89 72-169 26-115 (177)
39 KOG1644 U2-associated snRNP A' 97.3 0.00039 8.4E-09 53.4 4.5 82 74-167 43-126 (233)
40 KOG1859 Leucine-rich repeat pr 97.3 2.5E-05 5.3E-10 69.8 -2.4 83 73-169 187-269 (1096)
41 COG4886 Leucine-rich repeat (L 97.3 8.2E-05 1.8E-09 62.7 0.6 80 74-165 141-220 (394)
42 KOG2982 Uncharacterized conser 97.2 6.7E-05 1.4E-09 60.8 -0.1 87 73-166 71-158 (418)
43 KOG1644 U2-associated snRNP A' 97.2 0.00047 1E-08 52.9 4.3 59 103-167 43-101 (233)
44 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.4E-09 56.1 2.1 66 97-168 60-130 (260)
45 KOG0532 Leucine-rich repeat (L 97.1 0.00016 3.4E-09 63.1 0.8 41 126-168 208-248 (722)
46 KOG4658 Apoptotic ATPase [Sign 96.8 0.00066 1.4E-08 63.1 2.0 83 72-165 570-653 (889)
47 PF00560 LRR_1: Leucine Rich R 96.7 0.00071 1.5E-08 33.0 1.0 18 132-150 2-19 (22)
48 KOG0531 Protein phosphatase 1, 96.6 0.00051 1.1E-08 58.6 0.2 83 72-167 117-199 (414)
49 KOG0532 Leucine-rich repeat (L 96.6 0.00013 2.9E-09 63.5 -3.5 81 74-167 122-202 (722)
50 KOG3207 Beta-tubulin folding c 96.4 0.00055 1.2E-08 58.0 -1.3 66 72-143 145-210 (505)
51 KOG3207 Beta-tubulin folding c 96.1 0.0021 4.6E-08 54.5 0.8 80 99-182 243-328 (505)
52 KOG2123 Uncharacterized conser 96.1 0.00025 5.5E-09 57.0 -4.5 79 72-160 40-123 (388)
53 KOG1859 Leucine-rich repeat pr 95.8 0.0005 1.1E-08 61.7 -4.0 64 97-167 182-245 (1096)
54 PF00560 LRR_1: Leucine Rich R 95.7 0.0066 1.4E-07 29.5 1.3 18 103-121 1-18 (22)
55 KOG0473 Leucine-rich repeat pr 95.3 0.00029 6.3E-09 55.4 -6.7 85 71-167 40-124 (326)
56 KOG2739 Leucine-rich acidic nu 94.8 0.021 4.5E-07 45.4 2.4 61 101-167 42-104 (260)
57 KOG3665 ZYG-1-like serine/thre 94.8 0.014 3.1E-07 53.1 1.6 44 126-169 216-265 (699)
58 KOG1909 Ran GTPase-activating 94.6 0.01 2.2E-07 49.2 0.2 18 98-115 209-226 (382)
59 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.1E-07 25.7 1.4 11 132-142 3-13 (17)
60 KOG2123 Uncharacterized conser 94.3 0.0023 4.9E-08 51.7 -4.2 86 73-171 19-105 (388)
61 KOG3665 ZYG-1-like serine/thre 94.0 0.03 6.5E-07 51.0 1.9 86 72-167 147-233 (699)
62 PRK15386 type III secretion pr 92.8 0.31 6.7E-06 41.8 6.0 70 73-165 52-123 (426)
63 PF13306 LRR_5: Leucine rich r 92.3 0.53 1.2E-05 32.7 5.9 63 96-164 29-91 (129)
64 smart00369 LRR_TYP Leucine-ric 92.3 0.14 3.1E-06 25.5 2.1 14 130-143 2-15 (26)
65 smart00370 LRR Leucine-rich re 92.3 0.14 3.1E-06 25.5 2.1 14 130-143 2-15 (26)
66 COG5238 RNA1 Ran GTPase-activa 92.2 0.11 2.3E-06 42.2 2.4 70 98-167 88-170 (388)
67 KOG1909 Ran GTPase-activating 91.9 0.078 1.7E-06 44.0 1.3 41 126-166 209-253 (382)
68 PF13516 LRR_6: Leucine Rich r 91.3 0.034 7.3E-07 27.4 -0.9 13 131-143 3-15 (24)
69 KOG2982 Uncharacterized conser 90.8 0.09 1.9E-06 43.1 0.6 83 77-167 49-134 (418)
70 COG5238 RNA1 Ran GTPase-activa 90.0 0.35 7.7E-06 39.3 3.3 93 73-166 30-132 (388)
71 PRK15386 type III secretion pr 89.5 0.65 1.4E-05 39.8 4.7 31 131-164 157-187 (426)
72 PF13306 LRR_5: Leucine rich r 89.3 0.94 2E-05 31.4 4.8 77 74-163 36-112 (129)
73 smart00365 LRR_SD22 Leucine-ri 86.0 0.69 1.5E-05 23.4 1.8 14 130-143 2-15 (26)
74 KOG2120 SCF ubiquitin ligase, 84.8 0.45 9.7E-06 39.2 1.1 60 99-164 310-373 (419)
75 smart00364 LRR_BAC Leucine-ric 83.0 0.83 1.8E-05 23.1 1.3 16 131-147 3-18 (26)
76 smart00368 LRR_RI Leucine rich 81.5 1.2 2.6E-05 22.7 1.6 14 154-167 2-15 (28)
77 KOG2120 SCF ubiquitin ligase, 78.8 0.16 3.5E-06 41.7 -3.4 58 103-164 186-244 (419)
78 KOG3864 Uncharacterized conser 73.5 0.61 1.3E-05 36.1 -1.3 82 74-163 102-185 (221)
79 KOG3763 mRNA export factor TAP 68.9 2.7 5.8E-05 37.2 1.4 85 72-167 217-312 (585)
80 KOG0473 Leucine-rich repeat pr 67.3 0.14 2.9E-06 40.7 -6.1 68 97-171 37-104 (326)
81 KOG3763 mRNA export factor TAP 55.4 5.9 0.00013 35.2 1.1 63 99-167 215-283 (585)
82 TIGR00864 PCC polycystin catio 37.3 22 0.00048 37.7 2.0 32 79-115 1-32 (2740)
83 smart00367 LRR_CC Leucine-rich 33.4 31 0.00067 16.8 1.3 12 154-165 2-13 (26)
84 TIGR00864 PCC polycystin catio 26.5 40 0.00086 35.9 1.8 31 108-142 1-31 (2740)
85 KOG1947 Leucine rich repeat pr 22.4 52 0.0011 27.9 1.5 66 98-166 239-307 (482)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.75 E-value=9.9e-18 Score=148.79 Aligned_cols=139 Identities=30% Similarity=0.412 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccccceeEcCC----CCcEEEEEeCCCCCCCccccccCCccccC
Q 029521 25 EGCLEQERSALLQLKHFFNDDHRLQNWVDDENYSDCCQWERVECNNT----TGRVIKLDLTQTRKWESAEWYMNASLFTP 100 (192)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~c~~~----~~~v~~L~L~~~~l~~l~~~~l~~~~~~~ 100 (192)
......|..+|.++|+.+..+. ..+|.++.|.+..|.|.||.|... ...++.|+|++|.+.. . .|..+..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~-~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g--~---ip~~i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL-RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG--F---IPNDISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc-cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccc--c---CCHHHhC
Confidence 3455679999999999986211 247988665444468999999531 1258999999999862 2 1356889
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCCC
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 173 (192)
+++|+.|+|++|.+.|.+|.. ++.+++|+.|++++|+++|.+|..++++++|++|+|++|+++|.+|..
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred CCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 999999999999999999998 999999999999999999999999999999999999999999999964
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=1.3e-17 Score=154.48 Aligned_cols=135 Identities=28% Similarity=0.495 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCccccceeEcCCCCcEEEEEeCCCCCCCccccccCCccccCCCCCCE
Q 029521 28 LEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCCQWERVECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLES 106 (192)
Q Consensus 28 ~~~~~~~l~~~~~~~~-~~~~l~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~ 106 (192)
.++|+.+|++||+.+. |...+.+|+... +||.|.||+|+. ..+|+.|+++++.+.... +..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~---~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNN-SSRVVSIDLSGKNISGKI-----SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCC---CCCcCcceecCC-CCcEEEEEecCCCccccC-----ChHHhCCCCCCE
Confidence 4579999999999987 656678998766 899999999986 568999999998765221 123334444444
Q ss_pred EecCCCccccccCccccc-------------------ccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 107 LDLIGNNIAGCVENEGLE-------------------RLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 107 L~Ls~n~l~g~~p~~~~~-------------------~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
|++++|.++|.+|...+. ..+.+++|++|++++|.+++.+|..++.+++|++|+|++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 444444444444432100 0123444455555555555555555556666666666666655
Q ss_pred cccC
Q 029521 168 GSVD 171 (192)
Q Consensus 168 g~ip 171 (192)
+.+|
T Consensus 178 ~~~p 181 (968)
T PLN00113 178 GKIP 181 (968)
T ss_pred ccCC
Confidence 5555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=4.4e-11 Score=111.23 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=61.5
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCCCCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDIKGK 175 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 175 (192)
..+..+++|+.|++++|.++|.+|.. +..+++|++|++++|+++|.+|..+.++++|++|++++|+++|.+|..+.
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 45667777888888888888877777 78888888888888888888888888888888888888888888886554
Q ss_pred CC
Q 029521 176 VS 177 (192)
Q Consensus 176 ~~ 177 (192)
+.
T Consensus 593 ~~ 594 (968)
T PLN00113 593 FL 594 (968)
T ss_pred hc
Confidence 33
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.3e-10 Score=72.53 Aligned_cols=61 Identities=34% Similarity=0.465 Sum_probs=49.9
Q ss_pred CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcc
Q 029521 102 QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 102 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l 166 (192)
|+|++|++++|.++. +|+.. |..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~---f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDS---FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECTTT---TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCHHH---HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467888899888885 55432 88889999999999999877777889999999999998875
No 5
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=6.1e-09 Score=92.98 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=78.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|+|++|.+.. . .|..+..+++|+.|++++|.++|.+|.. ++++++|++|++++|+++|.+|..++.
T Consensus 442 ~~L~~L~Ls~N~l~g--~---iP~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 442 RHLQSINLSGNSIRG--N---IPPSLGSITSLEVLDLSYNSFNGSIPES----LGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCEEECCCCcccC--c---CChHHhCCCCCCEEECCCCCCCCCCchH----HhcCCCCCEEECcCCcccccCChHHhh
Confidence 578999999999862 1 1346889999999999999999999998 999999999999999999999999876
Q ss_pred C-CCCCEEeccCCccccccCC
Q 029521 153 L-SSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 153 l-~~L~~L~L~~N~l~g~ip~ 172 (192)
+ .++..+++.+|...+.+|.
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred ccccCceEEecCCccccCCCC
Confidence 4 4678999999987666664
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.84 E-value=2.5e-10 Score=85.15 Aligned_cols=84 Identities=24% Similarity=0.380 Sum_probs=69.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..++|+|.|++|.++.++. .+..+..|+.|++++|++. .+|.. ++.+++|+.|+++-|++. .+|..||
T Consensus 32 ~s~ITrLtLSHNKl~~vpp------nia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPP------NIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeecCC------cHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccC
Confidence 4578999999999876543 4677888888899988887 57877 888888888888888887 7888888
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.++.|+.|||.+|+++
T Consensus 100 s~p~levldltynnl~ 115 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLN 115 (264)
T ss_pred CCchhhhhhccccccc
Confidence 8888888888888876
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.8e-09 Score=80.36 Aligned_cols=82 Identities=30% Similarity=0.396 Sum_probs=23.8
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCccccccc-CCCCCCcEEEccCCcCCccC-chhcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERL-SRLNNLKFLHLDFNCFNNNI-FSSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~~-p~~l~ 151 (192)
+++.|++++|.++.+.. +..++.|+.|++++|.++. +.+. + ..+++|++|++++|++...- -..+.
T Consensus 43 ~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~~-i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 43 KLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRISS-ISEG----LDKNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp T--EEE-TTS--S--TT-----------TT--EEE--SS---S--CHH----HHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred CCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCCc-cccc----hHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence 45555555555554332 4445555555555555553 2221 2 23455555555555554311 12344
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.+++|++|+|.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 5555555555555554
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=4.7e-09 Score=65.34 Aligned_cols=60 Identities=32% Similarity=0.477 Sum_probs=52.8
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCF 142 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l 142 (192)
+++.|++++|.++.++. +.|..+++|++|++++|.++..-|.. |.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~-----~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP-----DSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECT-----TTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCH-----HHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence 58899999999987654 68999999999999999998655555 99999999999999985
No 9
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=4.6e-08 Score=56.60 Aligned_cols=38 Identities=37% Similarity=0.767 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhCC--CCCCCCCCCCC--CCCCCCccccceeEc
Q 029521 29 EQERSALLQLKHFFN--DDHRLQNWVDD--ENYSDCCQWERVECN 69 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~--~~~~l~~W~~~--~~~~~~c~w~gv~c~ 69 (192)
++|+++|++||+++. +...+.+|+.. . +||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~---~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDS---DPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S----CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCC---CCeeeccEEeC
Confidence 579999999999998 35789999986 5 89999999995
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=2.8e-09 Score=93.01 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.++..+|++.|+++.++ +.+.+++.|+.|+||+|.++. +... .+...+|++|++|.|+++ .+|+.+.+
T Consensus 222 ~NL~dvDlS~N~Lp~vP------ecly~l~~LrrLNLS~N~ite-L~~~----~~~W~~lEtLNlSrNQLt-~LP~avcK 289 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVP------ECLYKLRNLRRLNLSGNKITE-LNMT----EGEWENLETLNLSRNQLT-VLPDAVCK 289 (1255)
T ss_pred hhhhhccccccCCCcch------HHHhhhhhhheeccCcCceee-eecc----HHHHhhhhhhccccchhc-cchHHHhh
Confidence 46778899999887553 468889999999999999973 4443 566778999999999998 89999999
Q ss_pred CCCCCEEeccCCccccccCCCCCCCCCCchHHhhh
Q 029521 153 LSSLRHLSLAGNELDGSVDIKGKVSFIPSPVSHLL 187 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip~~~~~~~lp~~~~~~~ 187 (192)
+++|+.|++.+|+++ +..|||.|+++.
T Consensus 290 L~kL~kLy~n~NkL~--------FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLT--------FEGIPSGIGKLI 316 (1255)
T ss_pred hHHHHHHHhccCccc--------ccCCccchhhhh
Confidence 999999999999987 667778877765
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.8e-08 Score=74.95 Aligned_cols=94 Identities=28% Similarity=0.375 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCCCCCccccccCCcccc-CCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc-
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFT-PFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL- 150 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l- 150 (192)
.++++|+|++|.++.+.. ++ .+.+|+.|++++|.++. ++. +..+++|++|++++|+++. +...+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N~I~~-i~~~l~ 84 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNNRISS-ISEGLD 84 (175)
T ss_dssp -----------------S---------TT-TT--EEE-TTS--S---TT---------TT--EEE--SS---S--CHHHH
T ss_pred cccccccccccccccccc-------hhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCCCCCc-cccchH
Confidence 357899999999987654 44 57899999999999984 443 7889999999999999984 54444
Q ss_pred cCCCCCCEEeccCCccccccCCCCCCCCCCc
Q 029521 151 GGLSSLRHLSLAGNELDGSVDIKGKVSFIPS 181 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip~~~~~~~lp~ 181 (192)
..+++|+.|++++|++.. +.+-..+..+|.
T Consensus 85 ~~lp~L~~L~L~~N~I~~-l~~l~~L~~l~~ 114 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISD-LNELEPLSSLPK 114 (175)
T ss_dssp HH-TT--EEE-TTS---S-CCCCGGGGG-TT
T ss_pred HhCCcCCEEECcCCcCCC-hHHhHHHHcCCC
Confidence 468999999999999973 333233444444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.61 E-value=6.5e-09 Score=86.09 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=71.7
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccC-CcCCccCchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF-NCFNNNIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~l 150 (192)
+...++|+|..|+|+.++. .+|..+++|+.||||+|.|+..-|.. |.++++|..|-+.+ |+|+......|
T Consensus 66 P~~tveirLdqN~I~~iP~-----~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPP-----GAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CCcceEEEeccCCcccCCh-----hhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 4578999999999998765 78999999999999999999877777 88888877766555 88985544678
Q ss_pred cCCCCCCEEeccCCccc
Q 029521 151 GGLSSLRHLSLAGNELD 167 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~ 167 (192)
+++.+|+.|.+.-|++.
T Consensus 137 ~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHIN 153 (498)
T ss_pred hhHHHHHHHhcChhhhc
Confidence 88888888877777775
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.51 E-value=6.4e-09 Score=89.95 Aligned_cols=70 Identities=33% Similarity=0.415 Sum_probs=31.5
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
+.-.++|+.|+|++|.++..-+.. |..++.|++|+|+.|+++..-...|..+.+|+.|||++|.+++.|.
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGS----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhcccceeEeccccccccCChhH----HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 344444555555555544222222 3344444444444444443222334445555555555555555553
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.51 E-value=4.5e-09 Score=78.48 Aligned_cols=90 Identities=28% Similarity=0.306 Sum_probs=52.0
Q ss_pred CcEEEEEeCCCCCCCcccc-----------------ccCCccccCCCCCCEEecCCCcccc-ccCcccccccCCCCCCcE
Q 029521 73 GRVIKLDLTQTRKWESAEW-----------------YMNASLFTPFQQLESLDLIGNNIAG-CVENEGLERLSRLNNLKF 134 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~-----------------~l~~~~~~~l~~L~~L~Ls~n~l~g-~~p~~~~~~~~~l~~L~~ 134 (192)
.+++.|++.+|++.+++.- .+-|..|+.++.|+.||+++|++.. .+|.. |..++.|+.
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn----ff~m~tlra 131 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN----FFYMTTLRA 131 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc----hhHHHHHHH
Confidence 3566677777776554320 1123345555566666666555542 24444 555555556
Q ss_pred EEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 135 LHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 135 L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
|+++.|.|. .+|..++++++|+.|.+.+|.+-
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 666666665 56666777777777777777654
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.50 E-value=6e-08 Score=80.77 Aligned_cols=86 Identities=28% Similarity=0.371 Sum_probs=64.5
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcc--------------------cccccCCCCCCc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENE--------------------GLERLSRLNNLK 133 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~--------------------~~~~~~~l~~L~ 133 (192)
+++.|+|++|.+..++. .++.+..|+.+|+|+|.+. .+|.- .++.+.+|++|.
T Consensus 436 kLt~L~L~NN~Ln~LP~------e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPE------EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred cceeeecccchhhhcch------hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 56667777776665543 4666777788888877664 22221 123378899999
Q ss_pred EEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 134 FLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 134 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+||+.+|.+. .+|+.+|+|++|++|++++|.|+
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999997 78899999999999999999997
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.41 E-value=1.5e-07 Score=81.69 Aligned_cols=91 Identities=24% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCCCCCCcccc-------------------ccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCC
Q 029521 72 TGRVIKLDLTQTRKWESAEW-------------------YMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNL 132 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L 132 (192)
.++++.|+|.+|.|+++... +++...|..-.++++|+|++|.++..-... |..+.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL 199 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSL 199 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchh
Confidence 45678888888877644321 111122333334444444444444322222 4455555
Q ss_pred cEEEccCCcCCccCchhccCCCCCCEEeccCCcc
Q 029521 133 KFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 133 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l 166 (192)
.+|.|++|+++...+..|.++++|+.|+|..|++
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 5555555555533334555566666666666655
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=5e-07 Score=52.46 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=25.7
Q ss_pred CCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 130 NNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 56666777777777777777776
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.26 E-value=9.8e-07 Score=80.22 Aligned_cols=41 Identities=29% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 131 NLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 131 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+|+.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|.
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5667777788877 6888899999999999999999988664
No 19
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=9.7e-08 Score=68.81 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
.-+++.++|++|.+..++. ..-..++.++.+++++|.++ .+|.+ +..++.|+.|+++.|.+. ..|..+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~-----kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPK-----KFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCCH-----HHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHH
Confidence 4578999999999986553 33445678999999999998 59998 999999999999999998 7888888
Q ss_pred CCCCCCEEeccCCccccccCCCCCCCCCCc
Q 029521 152 GLSSLRHLSLAGNELDGSVDIKGKVSFIPS 181 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip~~~~~~~lp~ 181 (192)
.+.+|-.|+..+|.+. +||.....+..|.
T Consensus 121 ~L~~l~~Lds~~na~~-eid~dl~~s~~~a 149 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARA-EIDVDLFYSSLPA 149 (177)
T ss_pred HHHhHHHhcCCCCccc-cCcHHHhccccHH
Confidence 8999999999999876 6665433333343
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-07 Score=85.36 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=65.2
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|+|++|++..++. ..+.++..|+.|+||+|.++ .+|.. ...++.|++|...+|++. ..| .+.
T Consensus 382 ~~hLKVLhLsyNrL~~fpa-----s~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPA-----SKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccceeeeeecccccccCCH-----HHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhh
Confidence 4689999999999987765 67889999999999999998 47766 666777777777777766 566 566
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.++.|+.+|++.|+++
T Consensus 450 ~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hcCcceEEecccchhh
Confidence 6777777777777665
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=3.5e-07 Score=73.94 Aligned_cols=94 Identities=30% Similarity=0.381 Sum_probs=49.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|+++.|.+..++. +..+++|+.||||+|.++. +... -..+.+.++|.++.|.+. --..++++
T Consensus 308 kir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~N~Ls~-~~Gw----h~KLGNIKtL~La~N~iE--~LSGL~KL 373 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTVQN-------LAELPQLQLLDLSGNLLAE-CVGW----HLKLGNIKTLKLAQNKIE--TLSGLRKL 373 (490)
T ss_pred ceeEEeccccceeeehh-------hhhcccceEeecccchhHh-hhhh----HhhhcCEeeeehhhhhHh--hhhhhHhh
Confidence 34444444444443322 3445555666666665542 2211 233444455555555543 12345666
Q ss_pred CCCCEEeccCCccccccCCCCCCCCCCch
Q 029521 154 SSLRHLSLAGNELDGSVDIKGKVSFIPSP 182 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip~~~~~~~lp~~ 182 (192)
.+|..||+.+|++. .+.+...++++|=+
T Consensus 374 YSLvnLDl~~N~Ie-~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIE-ELDEVNHIGNLPCL 401 (490)
T ss_pred hhheeccccccchh-hHHHhcccccccHH
Confidence 77888888888886 44555556666643
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.19 E-value=7e-07 Score=74.54 Aligned_cols=92 Identities=25% Similarity=0.320 Sum_probs=73.2
Q ss_pred cEEEEEeCCCCCCCccc------------------cccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEE
Q 029521 74 RVIKLDLTQTRKWESAE------------------WYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFL 135 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~------------------~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L 135 (192)
-|+.+++++|++.+++. ..+.|..+..+++|..|++++|.+. .+|.+ ++.+..||.|
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e----~~~lv~Lq~L 463 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE----MGSLVRLQTL 463 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh----hhhhhhhhee
Confidence 48899999998765442 1345667888999999999999987 69998 9999999999
Q ss_pred EccCCcCCc-----------------------cCchhccCCCCCCEEeccCCccccccC
Q 029521 136 HLDFNCFNN-----------------------NIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 136 ~Ls~N~l~g-----------------------~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|++.|+|.. ..|+.+++|.+|.+|||.+|.+. .||
T Consensus 464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IP 521 (565)
T KOG0472|consen 464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIP 521 (565)
T ss_pred cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCC
Confidence 999988862 12233777889999999999998 444
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.11 E-value=6.6e-07 Score=78.57 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=40.0
Q ss_pred cccCCCCCCEEecCCCccc-cccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 97 LFTPFQQLESLDLIGNNIA-GCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
.++.++.|+.+++..|++. ..+|+. +..+..|..||||.|+++ +.|..+..-.++.+|+|++|+|. +||
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~d----iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIP 142 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTD----IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIP 142 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCch----hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCC
Confidence 3555556666666666553 225555 556666666666666665 55655655556666666666665 555
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.03 E-value=1.7e-06 Score=71.98 Aligned_cols=71 Identities=25% Similarity=0.289 Sum_probs=40.2
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
.|..+++|++++|++|.+++.-+.. |..+..+++|.|..|++...--..|.++..|+.|+|.+|+|+-.-|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 3555666666666666666544444 5555566666666666554444455555666666666666553333
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.5e-06 Score=47.72 Aligned_cols=37 Identities=43% Similarity=0.512 Sum_probs=30.1
Q ss_pred CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCC
Q 029521 102 QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFN 143 (192)
Q Consensus 102 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 143 (192)
++|++|++++|.++ .+|+. ++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCC
Confidence 46889999999998 47776 889999999999999988
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.01 E-value=2.1e-05 Score=75.05 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=56.6
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++.++.+..+. ..+..+++|+.++++++...+.+|. ++.+++|++|++++|..-..+|..++.+
T Consensus 612 ~L~~L~L~~s~l~~L~------~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLW------DGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCccccccc------cccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence 4555666655554332 2345677777788777654445654 6677777777777766556777777777
Q ss_pred CCCCEEeccCCccccccCC
Q 029521 154 SSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip~ 172 (192)
++|+.|++++|..-+.+|.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC
Confidence 7777777777654445554
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.95 E-value=2e-06 Score=69.64 Aligned_cols=81 Identities=25% Similarity=0.269 Sum_probs=50.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++++||++|.++.+. ....-+|.++.|++|+|.+.. + .. +..+++|+.||+|+|.++ .+-.+--++
T Consensus 285 ~LtelDLS~N~I~~iD------ESvKL~Pkir~L~lS~N~i~~-v-~n----La~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 285 ELTELDLSGNLITQID------ESVKLAPKLRRLILSQNRIRT-V-QN----LAELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hhhhccccccchhhhh------hhhhhccceeEEeccccceee-e-hh----hhhcccceEeecccchhH-hhhhhHhhh
Confidence 4566777777665442 244556677777777777652 2 12 556677777777777776 344444556
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
.+++.|.|++|.+.
T Consensus 352 GNIKtL~La~N~iE 365 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIE 365 (490)
T ss_pred cCEeeeehhhhhHh
Confidence 66777777777654
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.90 E-value=8.2e-06 Score=66.38 Aligned_cols=90 Identities=27% Similarity=0.316 Sum_probs=43.0
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccc----cCcccccccCCCCCCcEEEccCCcCCcc---
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC----VENEGLERLSRLNNLKFLHLDFNCFNNN--- 145 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~--- 145 (192)
.++++|++++|.++.-+...+ ...+..+++|+.|++++|.+++. ++.. +..+++|++|++++|.+++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEAL-AKALRANRDLKELNLANNGIGDAGIRALAEG----LKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred CCceEEEcCCCcCCchHHHHH-HHHHHhCCCcCEEECcCCCCchHHHHHHHHH----HHhCCCCCEEeccCCccChHHHH
Confidence 345666666665541110000 11233445566666666655531 1112 33445666666666665532
Q ss_pred -CchhccCCCCCCEEeccCCccc
Q 029521 146 -IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 146 -~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
++..+..+++|++|++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCc
Confidence 2233444555666666666555
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.86 E-value=3.9e-06 Score=76.21 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=73.4
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.||+++|.+..++ ..+..+++|+.|+++.|.+. ..|.. .+.+.+|++++|..|++. ..|..+..+
T Consensus 46 ~L~~l~lsnn~~~~fp------~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFP------IQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISEL 113 (1081)
T ss_pred eeEEeeccccccccCC------chhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhh
Confidence 3899999999987654 35778889999999999987 47776 889999999999999987 789999999
Q ss_pred CCCCEEeccCCccccccCC
Q 029521 154 SSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip~ 172 (192)
.+|++|+++.|+|. .+|.
T Consensus 114 knl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred hcccccccchhccC-CCch
Confidence 99999999999985 6664
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.86 E-value=3.5e-05 Score=70.27 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCCCCCcccc--------ccCCccccC-----CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccC
Q 029521 73 GRVIKLDLTQTRKWESAEW--------YMNASLFTP-----FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF 139 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~--------~l~~~~~~~-----l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~ 139 (192)
..++.|++++|.++.++.. ++....+.. ...|+.|++++|.+. .+|.. +. ++|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~-~LP~~----l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT-ELPER----LP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-cCChh----Hh--CCCCEEECcC
Confidence 3567777877777655431 000000000 113444555555544 34433 21 3567777777
Q ss_pred CcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 140 NCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 140 N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
|+++ .+|..+. ++|++|++++|+|++
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCcccc
Confidence 7776 4565443 367777777777763
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.85 E-value=3.8e-05 Score=70.09 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=51.2
Q ss_pred CcEEEEEeCCCCCCCcccc-------ccCCccccCC----CCCCEEecCCCccccccCcccccccC--------------
Q 029521 73 GRVIKLDLTQTRKWESAEW-------YMNASLFTPF----QQLESLDLIGNNIAGCVENEGLERLS-------------- 127 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~-------~l~~~~~~~l----~~L~~L~Ls~n~l~g~~p~~~~~~~~-------------- 127 (192)
..++.|++++|.+..++.. ++....+..+ ..|+.|++++|.+++ +|... ..+.
T Consensus 302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp-~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLP-SELYKLWAYNNRLTSLPA 379 (788)
T ss_pred cccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCC-cccceehhhccccccCcc
Confidence 5788888888877665441 1111112222 267888888888874 45320 0000
Q ss_pred CCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 128 RLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 128 ~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
...+|+.|++++|++++ +|.. .++|+.|++++|+|++ +|
T Consensus 380 l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 380 LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP 418 (788)
T ss_pred cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence 01246666777776663 4432 2456777777777763 55
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.71 E-value=1.6e-05 Score=64.72 Aligned_cols=69 Identities=26% Similarity=0.251 Sum_probs=40.7
Q ss_pred cCC-CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCccc
Q 029521 99 TPF-QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 99 ~~l-~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
..+ ++|+.+++++|.+++.........+..+++|++|++++|.+++. ++..+...++|++|++++|.++
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 344 66777777777766422111111255566777777777777642 3334455567777777777765
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.71 E-value=8.7e-05 Score=67.72 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=48.2
Q ss_pred CcEEEEEeCCCCCCCcccc--------ccCCccccC-----CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccC
Q 029521 73 GRVIKLDLTQTRKWESAEW--------YMNASLFTP-----FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF 139 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~--------~l~~~~~~~-----l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~ 139 (192)
.+.+.|+++++.++.++.. .+....+.. .++|+.|++++|.++ .+|.. + ..+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~----l--~~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPAT----L--PDTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChh----h--hccccEEECcC
Confidence 3578999999988766541 000001111 123445555555444 23332 2 12456666666
Q ss_pred CcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 140 NCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 140 N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
|++. .+|..+. .+|+.|++++|+++ .+|.
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-cccc
Confidence 6665 4555443 46888888888877 4553
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.65 E-value=0.00013 Score=69.82 Aligned_cols=88 Identities=20% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCcEEEEEeCCCC-CCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 72 TGRVIKLDLTQTR-KWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~-l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
..+++.|+|+++. +..++ .+..+++|+.|++++|.....+|.. +..+++|+.|++++|..-+.+|..+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-------~ls~l~~Le~L~L~~c~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKLSDCSSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-------ccccCCcccEEEecCCCCccccchh----hhccCCCCEEeCCCCCCcCccCCcC
Confidence 3568889998764 44333 2566788888888887666677777 8888888888888765545677654
Q ss_pred cCCCCCCEEeccCCccccccC
Q 029521 151 GGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip 171 (192)
++++|++|++++|...+.+|
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccc
Confidence 56777777777665444444
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.65 E-value=3.6e-05 Score=64.92 Aligned_cols=87 Identities=31% Similarity=0.453 Sum_probs=66.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCC-CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPF-QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l-~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.++.+++.+|.+..+.. ....+ ++|+.|++++|.+. .+|.. +..+++|+.|+++.|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCcc------ccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhh
Confidence 57888888888876654 23344 37889999999887 35444 788888999999999988 67766667
Q ss_pred CCCCCEEeccCCccccccCCC
Q 029521 153 LSSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip~~ 173 (192)
.++|+.|++++|+++ .+|..
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred hhhhhheeccCCccc-cCchh
Confidence 888888999998887 55543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.62 E-value=2e-05 Score=72.90 Aligned_cols=88 Identities=25% Similarity=0.336 Sum_probs=71.9
Q ss_pred cEEEEEeCCCC--CCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 74 RVIKLDLTQTR--KWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~--l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
.++.|-+.+|. +.. ++...|..++.|+.|||++|.--+.+|.. ++.+-+||+|+++...++ .+|..++
T Consensus 546 ~L~tLll~~n~~~l~~-----is~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~ 615 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLE-----ISGEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLG 615 (889)
T ss_pred ccceEEEeecchhhhh-----cCHHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHH
Confidence 46666666664 222 22345888999999999998877889998 999999999999999998 8999999
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
++.+|.+|++..+.-...+|
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred HHHhhheecccccccccccc
Confidence 99999999999887554543
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=7.1e-05 Score=63.86 Aligned_cols=83 Identities=33% Similarity=0.327 Sum_probs=65.3
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
...++.+++.+|.+..+.. .+..+++|+.|++++|.|+...+ +..++.|+.|++++|.++. + ..+.
T Consensus 94 ~~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~-~-~~~~ 159 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD-I-SGLE 159 (414)
T ss_pred ccceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcchh-c-cCCc
Confidence 4578889999999876543 26678999999999999985433 6677889999999999873 3 3466
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|+.+++++|.+..
T Consensus 160 ~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVD 176 (414)
T ss_pred cchhhhcccCCcchhhh
Confidence 68899999999999873
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=4.1e-06 Score=60.51 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCC-CCCCcEEEccCCcCCccCchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSR-LNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~-l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
....-.++|+...+..+.+. ...+....+|..+++++|.+.. .|+. |.. .+.++.|++++|.++ .+|.++
T Consensus 26 akE~h~ldLssc~lm~i~da---vy~l~~~~el~~i~ls~N~fk~-fp~k----ft~kf~t~t~lNl~~neis-dvPeE~ 96 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADA---VYMLSKGYELTKISLSDNGFKK-FPKK----FTIKFPTATTLNLANNEIS-DVPEEL 96 (177)
T ss_pred HHHhhhcccccchhhHHHHH---HHHHhCCceEEEEecccchhhh-CCHH----Hhhccchhhhhhcchhhhh-hchHHH
Confidence 34556677777766544331 1124456678889999999984 5655 443 458899999999998 799999
Q ss_pred cCCCCCCEEeccCCccccc
Q 029521 151 GGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ 169 (192)
..++.|+.|+++.|.+.-.
T Consensus 97 Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred hhhHHhhhcccccCccccc
Confidence 9999999999999998743
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00039 Score=53.37 Aligned_cols=82 Identities=26% Similarity=0.253 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCc--hhcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIF--SSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p--~~l~ 151 (192)
+...+||++|.+..+. .|..++.|..|.+.+|.|+..-|.- -.-+++|+.|.+.+|.+.. +. +.+.
T Consensus 43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~-l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQE-LGDLDPLA 110 (233)
T ss_pred ccceecccccchhhcc-------cCCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhh-hhhcchhc
Confidence 4567788888776543 3667788888888888887544443 3345678888888888752 22 2366
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.+++|++|.+-+|+.+
T Consensus 111 ~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCccceeeecCCchh
Confidence 7788888888888765
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.27 E-value=2.5e-05 Score=69.82 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=61.8
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
..++.|+|++|++.... .+..+++|++|||++|.+.. +|... ...+. |+.|.+.+|.++. + ..+.+
T Consensus 187 ~ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~~-vp~l~---~~gc~-L~~L~lrnN~l~t-L-~gie~ 252 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLRH-VPQLS---MVGCK-LQLLNLRNNALTT-L-RGIEN 252 (1096)
T ss_pred HHhhhhccchhhhhhhH-------HHHhcccccccccccchhcc-ccccc---hhhhh-heeeeecccHHHh-h-hhHHh
Confidence 46788899998887543 36778999999999999873 56531 34444 8888888888862 2 34778
Q ss_pred CCCCCEEeccCCccccc
Q 029521 153 LSSLRHLSLAGNELDGS 169 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ 169 (192)
+.+|+.||+++|-|++.
T Consensus 253 LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhccchhHhhhhcc
Confidence 88899999999988755
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.25 E-value=8.2e-05 Score=62.73 Aligned_cols=80 Identities=29% Similarity=0.341 Sum_probs=65.8
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..++ ..+..++.|+.|++++|.+. .+|.. .+.++.|+.|++++|+++ .+|..++..
T Consensus 141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELL 208 (394)
T ss_pred hcccccccccchhhhh------hhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhh
Confidence 7999999999988663 23678999999999999998 46665 558889999999999998 777776666
Q ss_pred CCCCEEeccCCc
Q 029521 154 SSLRHLSLAGNE 165 (192)
Q Consensus 154 ~~L~~L~L~~N~ 165 (192)
..|++|.+++|.
T Consensus 209 ~~L~~l~~~~N~ 220 (394)
T COG4886 209 SALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhcCCc
Confidence 778999998884
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=6.7e-05 Score=60.80 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc-Cchhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN-IFSSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~l~ 151 (192)
.+|.++||.+|.++.+..+ ...+..+|.|+.|+++.|.+...|-.. --.+.+|++|-|.+..+.-. .-..+.
T Consensus 71 ~~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence 4789999999999876653 346789999999999999998665543 23566889988888776432 223456
Q ss_pred CCCCCCEEeccCCcc
Q 029521 152 GLSSLRHLSLAGNEL 166 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l 166 (192)
.++.++.|.++.|.+
T Consensus 144 ~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL 158 (418)
T ss_pred cchhhhhhhhccchh
Confidence 677788888888844
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00047 Score=52.94 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=36.1
Q ss_pred CCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 103 QLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 103 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+...+||++|.+.. ++. |..++.|++|.+++|+|+.+-|.--.-+++|..|.|.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~-l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhh-ccc-----CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 44566777776642 222 566667777777777776555543344556777777777665
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00025 Score=56.11 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=52.4
Q ss_pred cccCCCCCCEEecCCC--ccccccCcccccccCCCCCCcEEEccCCcCCccCchh---ccCCCCCCEEeccCCcccc
Q 029521 97 LFTPFQQLESLDLIGN--NIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSS---LGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n--~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~---l~~l~~L~~L~L~~N~l~g 168 (192)
.+..+++|++|++|.| .+.+.++.. ...+++|++++++.|++.. ++. +..+.+|..|++.+|.-++
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc
Confidence 3677889999999999 667767665 6677999999999999973 433 4566788899999888765
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.11 E-value=0.00016 Score=63.08 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=34.0
Q ss_pred cCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 126 LSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..| .|..||+|.|+++ .+|-.|.+|+.|++|-|++|.++.
T Consensus 208 l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 4433 3778899999998 789899999999999999999873
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.79 E-value=0.00066 Score=63.09 Aligned_cols=83 Identities=27% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCcEEEEEeCCCC-CCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 72 TGRVIKLDLTQTR-KWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~-l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
.+.+..|||++|. +..+ |..++.+-+|++|++++..+. .+|.. +++++.|.+||+..+..-..+|...
T Consensus 570 m~~LrVLDLs~~~~l~~L------P~~I~~Li~LryL~L~~t~I~-~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKL------PSSIGELVHLRYLDLSDTGIS-HLPSG----LGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred CcceEEEECCCCCccCcC------ChHHhhhhhhhcccccCCCcc-ccchH----HHHHHhhheeccccccccccccchh
Confidence 4578899999764 3444 356888999999999999998 69998 9999999999999988766777778
Q ss_pred cCCCCCCEEeccCCc
Q 029521 151 GGLSSLRHLSLAGNE 165 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~ 165 (192)
..+++|++|.+....
T Consensus 639 ~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccEEEeeccc
Confidence 889999999986554
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.72 E-value=0.00071 Score=32.98 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=7.9
Q ss_pred CcEEEccCCcCCccCchhc
Q 029521 132 LKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l 150 (192)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.64 E-value=0.00051 Score=58.61 Aligned_cols=83 Identities=29% Similarity=0.395 Sum_probs=66.1
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.|..+.. +..++.|+.|++++|.++. +.. +..++.|+.+++++|+++..-+....
T Consensus 117 ~~~L~~L~ls~N~I~~i~~-------l~~l~~L~~L~l~~N~i~~-~~~-----~~~l~~L~~l~l~~n~i~~ie~~~~~ 183 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEG-------LSTLTLLKELNLSGNLISD-ISG-----LESLKSLKLLDLSYNRIVDIENDELS 183 (414)
T ss_pred hhcchheeccccccccccc-------hhhccchhhheeccCcchh-ccC-----CccchhhhcccCCcchhhhhhhhhhh
Confidence 4578999999999987654 5677779999999999984 333 66789999999999999854431157
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.+.+++.+++.+|.+.
T Consensus 184 ~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 184 ELISLEELDLGGNSIR 199 (414)
T ss_pred hccchHHHhccCCchh
Confidence 7788999999999875
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.61 E-value=0.00013 Score=63.54 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=38.6
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.+||+.|++..++. .+..++ |+.|-+++|+++ .+|.+ ++.++.|..||.+.|.+. .+|..++++
T Consensus 122 ~lt~l~ls~NqlS~lp~------~lC~lp-Lkvli~sNNkl~-~lp~~----ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPD------GLCDLP-LKVLIVSNNKLT-SLPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred HHHHhhhccchhhcCCh------hhhcCc-ceeEEEecCccc-cCCcc----cccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 45566666666554432 122222 444555555554 34444 444445555555555544 344444444
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
.+|+.|++..|++.
T Consensus 189 ~slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE 202 (722)
T ss_pred HHHHHHHHhhhhhh
Confidence 44444444444443
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.00055 Score=57.98 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=38.3
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCC
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFN 143 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 143 (192)
..+|+.|||++|-+..+-.+ -.....|++|+.|+++.|.+.-...... -..+++|+.|.++++.++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred CCcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCccccc---hhhhhhhheEEeccCCCC
Confidence 35688888888877654321 1334567888888888887754332221 113444555555555554
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0021 Score=54.55 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=50.6
Q ss_pred cCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCc-cCchh-----ccCCCCCCEEeccCCccccccCC
Q 029521 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNN-NIFSS-----LGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~-----l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
..+..|+.|||++|++-. .+. +...+.++.|+.|+++.+.+.. ..|+. ...+++|++|++..|++. .++.
T Consensus 243 ~i~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~s 318 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRS 318 (505)
T ss_pred hhhhHHhhccccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccc
Confidence 346678888888887753 221 1116677888888888887764 23333 345788999999998885 4454
Q ss_pred CCCCCCCCch
Q 029521 173 KGKVSFIPSP 182 (192)
Q Consensus 173 ~~~~~~lp~~ 182 (192)
......++++
T Consensus 319 l~~l~~l~nl 328 (505)
T KOG3207|consen 319 LNHLRTLENL 328 (505)
T ss_pred cchhhccchh
Confidence 4444444443
No 52
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.00025 Score=57.02 Aligned_cols=79 Identities=27% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchh--
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSS-- 149 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~-- 149 (192)
...++.|.|+-|.|+.+.. +..+++|+.|+|..|.|...-.-. -+.++++|+.|+|..|.-.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~sldEL~---YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIESLDELE---YLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cccceeEEeeccccccchh-------HHHHHHHHHHHHHhcccccHHHHH---HHhcCchhhhHhhccCCcccccchhHH
Confidence 4456777777777765543 566777777777777765311100 0566777777777777766655542
Q ss_pred ---ccCCCCCCEEe
Q 029521 150 ---LGGLSSLRHLS 160 (192)
Q Consensus 150 ---l~~l~~L~~L~ 160 (192)
+.-+++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 34456666654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.84 E-value=0.0005 Score=61.75 Aligned_cols=64 Identities=31% Similarity=0.425 Sum_probs=47.4
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
.+.-++.++.|||++|+++.. . . +..++.|++|||++|.++ .+|..-..-..|..|.+++|.++
T Consensus 182 SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhhhheeeeecccHHH
Confidence 455678889999999998742 2 3 788899999999999987 56642211124889999999876
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0066 Score=29.45 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=14.9
Q ss_pred CCCEEecCCCccccccCcc
Q 029521 103 QLESLDLIGNNIAGCVENE 121 (192)
Q Consensus 103 ~L~~L~Ls~n~l~g~~p~~ 121 (192)
+|++||+++|.++ .+|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4788999999988 78876
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.26 E-value=0.00029 Score=55.36 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 71 TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 71 ~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
...+++.||++.|++-.++. .|..++.+..+|++.|.+. .+|.+ ++.+..+..+++..|..+ ..|.++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred ccceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCccc
Confidence 35789999999998765554 5777889999999999987 47777 899999999999999987 889999
Q ss_pred cCCCCCCEEeccCCccc
Q 029521 151 GGLSSLRHLSLAGNELD 167 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~ 167 (192)
+..+.++++++-.|.|.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999888865
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.81 E-value=0.021 Score=45.40 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=43.4
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCC--cCCccCchhccCCCCCCEEeccCCccc
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFN--CFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N--~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+..|+.+.+.+..++.. - . +..|++|+.|.++.| +.++.++-..-.+++|++|++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~-~-~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-T-N----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec-c-c----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44455555555554421 1 1 677889999999999 666666655556699999999999986
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.80 E-value=0.014 Score=53.11 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCCCCCCcEEEccCCcCCccC--ch----hccCCCCCCEEeccCCccccc
Q 029521 126 LSRLNNLKFLHLDFNCFNNNI--FS----SLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~~--p~----~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+.+|++|+.||+|..+..... .. .-..+|+|+.||.+++.+.+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 667888888888877765321 11 123478888888887776543
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.61 E-value=0.01 Score=49.17 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=10.5
Q ss_pred ccCCCCCCEEecCCCccc
Q 029521 98 FTPFQQLESLDLIGNNIA 115 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~ 115 (192)
+..+++|+.||+..|.++
T Consensus 209 l~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHhCCcceeeecccchhh
Confidence 445566666666666554
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.60 E-value=0.024 Score=25.70 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=3.5
Q ss_pred CcEEEccCCcC
Q 029521 132 LKFLHLDFNCF 142 (192)
Q Consensus 132 L~~L~Ls~N~l 142 (192)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0023 Score=51.70 Aligned_cols=86 Identities=30% Similarity=0.248 Sum_probs=67.9
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCc-hhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIF-SSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~l~ 151 (192)
..|+.|+.-|..+..+. ....++.|+.|.||-|.++..-| +..+++|++|+|..|.|...-. ..+.
T Consensus 19 ~~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 34666777777666543 46689999999999999986544 7899999999999999974222 3478
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
++++|+.|-|..|.-.|.-+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred cCchhhhHhhccCCcccccc
Confidence 89999999999999887654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.02 E-value=0.03 Score=51.03 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=59.1
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCc-cCchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNN-NIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~l 150 (192)
.+.+++|.+.+..+..-.. .....++++|..||+|+.+++.. .+ ++++++|+.|.+.+=.|.. ..-..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl--~G----IS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNL--SG----ISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCc--HH----HhccccHHHHhccCCCCCchhhHHHH
Confidence 4567777777765531100 12356799999999999888742 33 8899999998877766652 222356
Q ss_pred cCCCCCCEEeccCCccc
Q 029521 151 GGLSSLRHLSLAGNELD 167 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~ 167 (192)
.++++|++||+|.....
T Consensus 217 F~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNN 233 (699)
T ss_pred hcccCCCeeeccccccc
Confidence 78999999999987653
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.83 E-value=0.31 Score=41.76 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=42.2
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCC-CccccccCcccccccCCCCCCcEEEccCC-cCCccCchhc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIG-NNIAGCVENEGLERLSRLNNLKFLHLDFN-CFNNNIFSSL 150 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~~p~~l 150 (192)
...+.|+++++.+..++. + -+.|+.|++++ +.+ ..+|.. + .++|++|++++| ++. .+|.
T Consensus 52 ~~l~~L~Is~c~L~sLP~--L-------P~sLtsL~Lsnc~nL-tsLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~-- 112 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--L-------PNELTEITIENCNNL-TTLPGS----I--PEGLEKLTVCHCPEIS-GLPE-- 112 (426)
T ss_pred cCCCEEEeCCCCCcccCC--C-------CCCCcEEEccCCCCc-ccCCch----h--hhhhhheEccCccccc-cccc--
Confidence 457788999887776542 1 12578888876 333 345543 3 246788888877 443 4553
Q ss_pred cCCCCCCEEeccCCc
Q 029521 151 GGLSSLRHLSLAGNE 165 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~ 165 (192)
+|+.|+++.|.
T Consensus 113 ----sLe~L~L~~n~ 123 (426)
T PRK15386 113 ----SVRSLEIKGSA 123 (426)
T ss_pred ----ccceEEeCCCC
Confidence 35556665544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.31 E-value=0.53 Score=32.66 Aligned_cols=63 Identities=13% Similarity=0.290 Sum_probs=25.9
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
..|..++.++.+++.++ +.. ++... |..+++++.+.+.. .+.......|..+++|+.+++..|
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~-i~~~~---F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTS-IGDNA---FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSC-E-TTT---TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred hhccccccccccccccc-ccc-cceee---eecccccccccccc-cccccccccccccccccccccCcc
Confidence 34555555666665553 332 22221 55555555555543 222122234445555555555443
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.30 E-value=0.14 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=7.3
Q ss_pred CCCcEEEccCCcCC
Q 029521 130 NNLKFLHLDFNCFN 143 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~ 143 (192)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.30 E-value=0.14 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=7.3
Q ss_pred CCCcEEEccCCcCC
Q 029521 130 NNLKFLHLDFNCFN 143 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~ 143 (192)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.24 E-value=0.11 Score=42.19 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=43.9
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc-------------CCCCCCEEeccCC
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG-------------GLSSLRHLSLAGN 164 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~-------------~l~~L~~L~L~~N 164 (192)
+-.+|+|+..+||.|.+....|+...+-++.-+.|.+|.+++|.+...--.-++ .-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 456777888888888777666654333356667778888887776421111122 2356777777777
Q ss_pred ccc
Q 029521 165 ELD 167 (192)
Q Consensus 165 ~l~ 167 (192)
.+.
T Consensus 168 Rle 170 (388)
T COG5238 168 RLE 170 (388)
T ss_pred hhc
Confidence 765
No 67
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.89 E-value=0.078 Score=44.04 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=21.1
Q ss_pred cCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCcc
Q 029521 126 LSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l 166 (192)
+..+++|+.||+..|.|+-. +...+..++.|+.|+++++.+
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 45555666666666655432 222344445555555555554
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.29 E-value=0.034 Score=27.36 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=5.2
Q ss_pred CCcEEEccCCcCC
Q 029521 131 NLKFLHLDFNCFN 143 (192)
Q Consensus 131 ~L~~L~Ls~N~l~ 143 (192)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=0.09 Score=43.12 Aligned_cols=83 Identities=30% Similarity=0.345 Sum_probs=56.1
Q ss_pred EEEeCCCCCCCccccccCCccc-cCCCCCCEEecCCCccccc--cCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 77 KLDLTQTRKWESAEWYMNASLF-TPFQQLESLDLIGNNIAGC--VENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 77 ~L~L~~~~l~~l~~~~l~~~~~-~~l~~L~~L~Ls~n~l~g~--~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
-+-+.+..+...+.. ..| ...+.++.+||.+|.++.- +-.- +.+|+.|++|+++.|.++..|-..=...
T Consensus 49 llvln~~~id~~gd~----~~~~~~~~~v~elDL~~N~iSdWseI~~i----le~lP~l~~LNls~N~L~s~I~~lp~p~ 120 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDV----MLFGSSVTDVKELDLTGNLISDWSEIGAI----LEQLPALTTLNLSCNSLSSDIKSLPLPL 120 (418)
T ss_pred hheecCCCCCcchhH----HHHHHHhhhhhhhhcccchhccHHHHHHH----HhcCccceEeeccCCcCCCccccCcccc
Confidence 344555556544442 122 2467889999999998742 2222 6789999999999999986543321456
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
.+|++|-|.+..+.
T Consensus 121 ~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLS 134 (418)
T ss_pred cceEEEEEcCCCCC
Confidence 78999998887764
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.02 E-value=0.35 Score=39.27 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccc---cccCccc---ccccCCCCCCcEEEccCCcCCccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA---GCVENEG---LERLSRLNNLKFLHLDFNCFNNNI 146 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~---g~~p~~~---~~~~~~l~~L~~L~Ls~N~l~g~~ 146 (192)
..+++++|+||.+..=..-.+ ...+.+-..|+..+++.-... ..++... ...+-.+++|+..+||.|-|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 457888888887742111000 012344566677777654321 1122210 122567788888888888887766
Q ss_pred chh----ccCCCCCCEEeccCCcc
Q 029521 147 FSS----LGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 147 p~~----l~~l~~L~~L~L~~N~l 166 (192)
|.. +++-+.|++|.|++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 654 44557788888888876
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.51 E-value=0.65 Score=39.83 Aligned_cols=31 Identities=26% Similarity=0.125 Sum_probs=14.2
Q ss_pred CCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 131 NLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 131 ~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
+|++|+++++... .+|..+. .+|++|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555554433 2332222 35555555544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.33 E-value=0.94 Score=31.37 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.+.+..+ +..++. ..|..++.++.+.+.+ .+. .++... |..+++|+.+++..+ +...-...|.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~-----~~F~~~~~l~~i~~~~-~~~-~i~~~~---F~~~~~l~~i~~~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGD-----NAFSNCKSLESITFPN-NLK-SIGDNA---FSNCTNLKNIDIPSN-ITEIGSSSFSNC 103 (129)
T ss_dssp T-SEEEESST-TSCE-T-----TTTTT-TT-EEEEETS-TT--EE-TTT---TTT-TTECEEEETTT--BEEHTTTTTT-
T ss_pred cccccccccc-ccccce-----eeeecccccccccccc-ccc-cccccc---ccccccccccccCcc-ccEEchhhhcCC
Confidence 5677777764 555544 5688888899999976 333 233331 778999999999776 553444567776
Q ss_pred CCCCEEeccC
Q 029521 154 SSLRHLSLAG 163 (192)
Q Consensus 154 ~~L~~L~L~~ 163 (192)
+|+.+.+..
T Consensus 104 -~l~~i~~~~ 112 (129)
T PF13306_consen 104 -NLKEINIPS 112 (129)
T ss_dssp -T--EEE-TT
T ss_pred -CceEEEECC
Confidence 888888765
No 73
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.00 E-value=0.69 Score=23.38 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=8.2
Q ss_pred CCCcEEEccCCcCC
Q 029521 130 NNLKFLHLDFNCFN 143 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~ 143 (192)
++|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.85 E-value=0.45 Score=39.18 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=43.8
Q ss_pred cCCCCCCEEecCCCcc-ccccCcccccccCCCCCCcEEEccCCcCCccCchh---ccCCCCCCEEeccCC
Q 029521 99 TPFQQLESLDLIGNNI-AGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSS---LGGLSSLRHLSLAGN 164 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l-~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~---l~~l~~L~~L~L~~N 164 (192)
.++++|..||||.+.. +... +..+-+++.|++|.++++. +.+|.. +..+++|.+||+.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~----~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC----FQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchH----HHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 4688999999998653 3222 2237888999999988876 467764 567889999987543
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.99 E-value=0.83 Score=23.10 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=8.3
Q ss_pred CCcEEEccCCcCCccCc
Q 029521 131 NLKFLHLDFNCFNNNIF 147 (192)
Q Consensus 131 ~L~~L~Ls~N~l~g~~p 147 (192)
+|++|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 3555555555554 344
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.48 E-value=1.2 Score=22.70 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=10.5
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888774
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.77 E-value=0.16 Score=41.71 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=43.0
Q ss_pred CCCEEecCCCccccc-cCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 103 QLESLDLIGNNIAGC-VENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 103 ~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
.|+++|||...++-. +..- ++.+.+|+.|.+.++++...+...+++-.+|+.|+|+..
T Consensus 186 Rlq~lDLS~s~it~stl~~i----Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGI----LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHH----HHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 578888888877532 2222 667778888888888888888778888788888888654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.50 E-value=0.61 Score=36.06 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=51.5
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccC-CCCCCcEEEccCC-cCCccCchhcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS-RLNNLKFLHLDFN-CFNNNIFSSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~Ls~N-~l~g~~p~~l~ 151 (192)
.|+.+|-++..+...|- .-+.+++.++.|.+.+..--+ .....-++ -.++|+.|+++.| +||..--..+.
T Consensus 102 ~IeaVDAsds~I~~eGl-----e~L~~l~~i~~l~l~~ck~~d---D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-----EHLRDLRSIKSLSLANCKYFD---DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHH-----HHHhccchhhhheeccccchh---hHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 47788888877765443 345667777777777654321 10000022 3468999999965 46655556788
Q ss_pred CCCCCCEEeccC
Q 029521 152 GLSSLRHLSLAG 163 (192)
Q Consensus 152 ~l~~L~~L~L~~ 163 (192)
++++|+.|.+.+
T Consensus 174 ~lknLr~L~l~~ 185 (221)
T KOG3864|consen 174 KLKNLRRLHLYD 185 (221)
T ss_pred HhhhhHHHHhcC
Confidence 888888887764
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.94 E-value=2.7 Score=37.23 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=51.9
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCC--cccc--ccCcccccccCCCCCCcEEEccCCcCCccCc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGN--NIAG--CVENEGLERLSRLNNLKFLHLDFNCFNNNIF 147 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n--~l~g--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p 147 (192)
.+.|..+.|++|++..+... ...-...|+|..|+|++| .+.. +++. ++. ..|++|.+.+|.+....-
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N~~~~~~~~el~K-----~k~-l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHNHSKISSESELDK-----LKG-LPLEELVLEGNPLCTTFS 287 (585)
T ss_pred Ccceeeeecccchhhchhhh---hHHHHhcchhheeecccchhhhcchhhhhh-----hcC-CCHHHeeecCCccccchh
Confidence 45788999999988765542 122335778999999999 4332 1211 222 358889999998875433
Q ss_pred h---hc----cCCCCCCEEeccCCccc
Q 029521 148 S---SL----GGLSSLRHLSLAGNELD 167 (192)
Q Consensus 148 ~---~l----~~l~~L~~L~L~~N~l~ 167 (192)
. .+ ..+|+|..|| ++.+.
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred hhHHHHHHHHHhcchheeec--CcccC
Confidence 2 11 2456666654 55554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.30 E-value=0.14 Score=40.70 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=55.2
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
.+..+.+.+.||++.|.+.. +-.. |+.++.+..+|++.|.+. ..|.-++....++.+++..|..+ ..|
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 45567788999999998863 3333 778888999999999997 78988999999999999988876 444
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.36 E-value=5.9 Score=35.16 Aligned_cols=63 Identities=30% Similarity=0.289 Sum_probs=41.5
Q ss_pred cCCCCCCEEecCCCccccc--cCcccccccCCCCCCcEEEccCC--cCCccCchhccCC--CCCCEEeccCCccc
Q 029521 99 TPFQQLESLDLIGNNIAGC--VENEGLERLSRLNNLKFLHLDFN--CFNNNIFSSLGGL--SSLRHLSLAGNELD 167 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g~--~p~~~~~~~~~l~~L~~L~Ls~N--~l~g~~p~~l~~l--~~L~~L~L~~N~l~ 167 (192)
.+.+.+..+.|++|++... +..- -...++|+.|+|++| .+. ...++.++ ..|+.|-+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl----sq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL----SQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH----HHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccc
Confidence 4577788899999988632 1111 234578899999999 433 22334433 35788889999875
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.34 E-value=22 Score=37.66 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=25.8
Q ss_pred EeCCCCCCCccccccCCccccCCCCCCEEecCCCccc
Q 029521 79 DLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA 115 (192)
Q Consensus 79 ~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 115 (192)
||++|+|..++. ..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~-----g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEE-----GICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccCh-----HHhccCCCceEEEeeCCccc
Confidence 578888876654 67888999999999998774
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.36 E-value=31 Score=16.76 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=8.7
Q ss_pred CCCCEEeccCCc
Q 029521 154 SSLRHLSLAGNE 165 (192)
Q Consensus 154 ~~L~~L~L~~N~ 165 (192)
++|++|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 577888887764
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.47 E-value=40 Score=35.92 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=15.8
Q ss_pred ecCCCccccccCcccccccCCCCCCcEEEccCCcC
Q 029521 108 DLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCF 142 (192)
Q Consensus 108 ~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l 142 (192)
||++|+|+. +|... |..+++|++|+|++|.|
T Consensus 1 DLSnN~Lst-Lp~g~---F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIST-IEEGI---CANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCc-cChHH---hccCCCceEEEeeCCcc
Confidence 355555553 33321 55555555666655554
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=22.37 E-value=52 Score=27.90 Aligned_cols=66 Identities=29% Similarity=0.287 Sum_probs=35.5
Q ss_pred ccCCCCCCEEecCCCc-cccccCcccccccCCCCCCcEEEccCCc-CCccCc-hhccCCCCCCEEeccCCcc
Q 029521 98 FTPFQQLESLDLIGNN-IAGCVENEGLERLSRLNNLKFLHLDFNC-FNNNIF-SSLGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p-~~l~~l~~L~~L~L~~N~l 166 (192)
...+++|+.+++++.. ++...=.. --..+++|++|.+.+.. ++..-- .....+++|++|+++.+..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~---l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSA---LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHH---HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3345677777777665 33211011 01236678888766555 443211 2234567788888876653
Done!