Query 029521
Match_columns 192
No_of_seqs 211 out of 2272
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 23:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 6.1E-22 2.1E-26 160.7 10.4 136 26-171 2-142 (313)
2 3rgz_A Protein brassinosteroid 99.8 1.4E-19 4.9E-24 162.6 11.1 139 23-171 5-168 (768)
3 4eco_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 153.5 12.1 133 27-173 27-268 (636)
4 4ecn_A Leucine-rich repeat pro 99.7 7.2E-18 2.5E-22 153.4 10.1 134 25-172 264-509 (876)
5 1w8a_A SLIT protein; signaling 99.7 7E-16 2.4E-20 116.6 11.0 104 61-172 8-120 (192)
6 4fcg_A Uncharacterized protein 99.7 2.2E-17 7.4E-22 134.8 2.7 135 24-173 21-169 (328)
7 3g39_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 109.6 10.4 102 61-171 9-119 (170)
8 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 107.8 11.5 102 61-171 7-117 (177)
9 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4E-19 112.1 11.3 105 56-169 5-119 (220)
10 2o6s_A Variable lymphocyte rec 99.6 1.7E-14 6E-19 109.7 11.5 99 61-168 7-114 (208)
11 2wfh_A SLIT homolog 2 protein 99.6 2.1E-14 7.1E-19 108.7 11.5 101 61-171 10-119 (193)
12 3e6j_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 111.9 11.1 100 59-167 17-125 (229)
13 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-14 6.1E-19 111.1 11.1 107 61-171 11-146 (220)
14 3rgz_A Protein brassinosteroid 99.5 9.4E-15 3.2E-19 131.3 8.1 100 73-181 632-731 (768)
15 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 101.7 10.6 101 61-170 12-121 (174)
16 3m19_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 105.2 10.2 85 74-167 36-120 (251)
17 1w8a_A SLIT protein; signaling 99.4 2.7E-13 9.3E-18 102.3 8.7 91 72-171 53-143 (192)
18 2v70_A SLIT-2, SLIT homolog 2 99.4 4.2E-13 1.4E-17 103.4 9.7 90 73-171 81-170 (220)
19 2xot_A Amphoterin-induced prot 99.4 7.7E-13 2.6E-17 109.0 11.2 107 54-169 10-127 (361)
20 2ifg_A High affinity nerve gro 99.4 4.6E-13 1.6E-17 109.3 9.8 103 57-169 2-118 (347)
21 3v47_A TOLL-like receptor 5B a 99.4 4.9E-13 1.7E-17 112.5 8.4 106 59-172 6-121 (455)
22 2o6q_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 103.1 10.3 86 74-168 38-123 (270)
23 2z80_A TOLL-like receptor 2, v 99.4 1.5E-12 5.2E-17 106.5 10.8 103 59-172 28-141 (353)
24 4g8a_A TOLL-like receptor 4; l 99.4 1.4E-12 4.7E-17 113.3 10.3 91 72-171 51-141 (635)
25 2v9t_B SLIT homolog 2 protein 99.4 2.2E-12 7.6E-17 99.3 9.9 91 72-171 55-145 (220)
26 3zyj_A Leucine-rich repeat-con 99.4 3E-12 1E-16 107.8 11.1 98 63-169 45-151 (440)
27 2z81_A CD282 antigen, TOLL-lik 99.4 2.5E-12 8.6E-17 110.6 10.8 100 59-168 2-112 (549)
28 4fcg_A Uncharacterized protein 99.4 1.5E-12 5E-17 106.1 8.5 72 97-172 224-295 (328)
29 2id5_A Lingo-1, leucine rich r 99.4 3.3E-12 1.1E-16 108.3 10.8 100 63-171 13-121 (477)
30 2z66_A Variable lymphocyte rec 99.3 1.5E-12 5.2E-17 104.3 7.5 97 61-167 7-114 (306)
31 2xwt_C Thyrotropin receptor; s 99.3 2E-12 6.7E-17 100.3 7.3 91 72-172 30-122 (239)
32 2o6r_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 94.6 8.4 91 72-171 51-141 (177)
33 3e6j_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 97.2 10.1 90 72-171 63-152 (229)
34 3zyi_A Leucine-rich repeat-con 99.3 6.7E-12 2.3E-16 106.1 11.0 98 63-169 56-162 (452)
35 1ozn_A Reticulon 4 receptor; N 99.3 9E-12 3.1E-16 98.9 11.0 87 73-168 32-119 (285)
36 3m19_A Variable lymphocyte rec 99.3 8.6E-12 3E-16 97.5 10.4 89 74-171 84-172 (251)
37 3g39_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 92.2 9.7 85 75-171 11-95 (170)
38 2o6s_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 94.3 10.2 85 74-167 53-137 (208)
39 2wfh_A SLIT homolog 2 protein 99.3 7.4E-12 2.5E-16 94.6 9.0 90 72-170 53-142 (193)
40 1ogq_A PGIP-2, polygalacturona 99.3 2.9E-12 1E-16 103.5 7.0 76 95-175 214-289 (313)
41 3j0a_A TOLL-like receptor 5; m 99.3 5.1E-12 1.8E-16 114.6 8.6 102 61-173 14-116 (844)
42 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.6E-16 91.2 9.8 84 76-171 15-98 (174)
43 3rfs_A Internalin B, repeat mo 99.3 2.2E-11 7.5E-16 96.3 10.4 70 98-171 129-198 (272)
44 3rfs_A Internalin B, repeat mo 99.3 2.9E-11 1E-15 95.6 10.8 90 73-171 85-174 (272)
45 3vq2_A TLR4, TOLL-like recepto 99.3 1.9E-11 6.5E-16 106.4 10.1 90 72-170 31-120 (606)
46 4g8a_A TOLL-like receptor 4; l 99.2 1.4E-11 4.9E-16 106.9 8.6 92 74-173 470-561 (635)
47 4ay9_X Follicle-stimulating ho 99.2 2E-11 6.9E-16 100.0 8.8 103 61-171 9-121 (350)
48 2je0_A Acidic leucine-rich nuc 99.2 8.2E-12 2.8E-16 89.9 5.6 89 72-171 41-130 (149)
49 2z62_A TOLL-like receptor 4, v 99.2 5.3E-11 1.8E-15 94.0 10.5 86 74-168 29-114 (276)
50 1dce_A Protein (RAB geranylger 99.2 2.7E-11 9.3E-16 105.6 8.9 89 72-172 462-551 (567)
51 2ell_A Acidic leucine-rich nuc 99.2 9.6E-12 3.3E-16 91.3 5.2 88 73-171 49-137 (168)
52 2je0_A Acidic leucine-rich nuc 99.2 2.7E-11 9.2E-16 87.2 7.1 84 73-168 17-102 (149)
53 3v47_A TOLL-like receptor 5B a 99.2 3.6E-11 1.2E-15 101.1 9.0 87 73-168 299-385 (455)
54 1p9a_G Platelet glycoprotein I 99.2 1.1E-10 3.7E-15 93.4 11.3 84 74-167 78-161 (290)
55 3t6q_A CD180 antigen; protein- 99.2 4.8E-11 1.6E-15 103.8 10.0 88 72-168 32-119 (606)
56 2o6q_A Variable lymphocyte rec 99.2 9.3E-11 3.2E-15 92.5 10.5 67 98-168 105-171 (270)
57 2ft3_A Biglycan; proteoglycan, 99.2 6.9E-11 2.4E-15 95.8 9.8 95 61-167 33-136 (332)
58 1ozn_A Reticulon 4 receptor; N 99.2 8.6E-11 2.9E-15 93.2 9.9 68 98-169 125-192 (285)
59 2z66_A Variable lymphocyte rec 99.2 4.9E-11 1.7E-15 95.5 8.6 91 74-172 151-241 (306)
60 4ezg_A Putative uncharacterize 99.2 3.8E-11 1.3E-15 90.6 7.5 81 74-165 67-147 (197)
61 1a9n_A U2A', U2A'; complex (nu 99.2 3.4E-11 1.2E-15 89.2 6.8 82 74-167 43-126 (176)
62 2xot_A Amphoterin-induced prot 99.2 5.3E-11 1.8E-15 97.9 8.4 88 72-168 63-150 (361)
63 2ifg_A High affinity nerve gro 99.2 8.9E-11 3E-15 95.6 9.3 84 77-171 12-97 (347)
64 1p9a_G Platelet glycoprotein I 99.2 1.3E-10 4.5E-15 92.9 10.0 91 72-172 99-189 (290)
65 1dce_A Protein (RAB geranylger 99.2 4.8E-11 1.7E-15 104.1 7.6 85 74-172 442-527 (567)
66 3vq2_A TLR4, TOLL-like recepto 99.2 8.3E-11 2.8E-15 102.3 9.0 86 73-167 56-141 (606)
67 2ell_A Acidic leucine-rich nuc 99.2 4.7E-11 1.6E-15 87.6 6.3 83 74-168 25-109 (168)
68 4b8c_D Glucose-repressible alc 99.2 4.6E-11 1.6E-15 106.9 7.5 87 73-172 224-310 (727)
69 1xku_A Decorin; proteoglycan, 99.2 1.7E-10 5.9E-15 93.3 10.2 98 60-167 30-158 (330)
70 2z62_A TOLL-like receptor 4, v 99.1 1E-10 3.5E-15 92.4 8.4 67 98-168 96-163 (276)
71 4b8c_D Glucose-repressible alc 99.1 2E-11 6.8E-16 109.3 4.3 89 72-172 246-334 (727)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.1E-10 3.8E-15 101.1 8.7 84 73-168 52-135 (562)
73 3zyj_A Leucine-rich repeat-con 99.1 1.7E-10 5.9E-15 97.1 9.6 69 98-170 203-271 (440)
74 1ziw_A TOLL-like receptor 3; i 99.1 1E-10 3.4E-15 103.2 8.4 73 96-172 67-139 (680)
75 3oja_B Anopheles plasmodium-re 99.1 7.3E-11 2.5E-15 103.1 7.2 73 96-172 93-165 (597)
76 3oja_B Anopheles plasmodium-re 99.1 1.9E-10 6.5E-15 100.5 9.8 84 75-167 53-136 (597)
77 3o6n_A APL1; leucine-rich repe 99.1 6.8E-11 2.3E-15 97.8 6.6 72 96-171 87-158 (390)
78 3zyi_A Leucine-rich repeat-con 99.1 2.1E-10 7.3E-15 96.8 9.6 68 98-169 214-281 (452)
79 3o6n_A APL1; leucine-rich repe 99.1 2.5E-10 8.7E-15 94.4 9.8 85 74-167 46-130 (390)
80 4ezg_A Putative uncharacterize 99.1 1.6E-10 5.5E-15 87.1 7.9 87 72-168 87-173 (197)
81 2id5_A Lingo-1, leucine rich r 99.1 2.8E-10 9.5E-15 96.4 9.2 91 72-171 55-145 (477)
82 1a9n_A U2A', U2A'; complex (nu 99.1 1.5E-10 5.2E-15 85.7 6.6 87 72-172 18-105 (176)
83 3t6q_A CD180 antigen; protein- 99.1 3.3E-10 1.1E-14 98.5 9.6 93 72-173 56-149 (606)
84 2z7x_B TOLL-like receptor 1, v 99.1 1.3E-10 4.5E-15 99.4 6.7 84 73-168 21-104 (520)
85 2z63_A TOLL-like receptor 4, v 99.1 3.6E-10 1.2E-14 97.3 8.9 72 96-171 439-511 (570)
86 2z63_A TOLL-like receptor 4, v 99.1 4.5E-10 1.6E-14 96.7 9.4 86 73-167 28-113 (570)
87 4eco_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 99.5 8.7 88 74-173 489-584 (636)
88 1wwl_A Monocyte differentiatio 99.0 6.3E-11 2.1E-15 95.5 2.7 87 73-169 95-188 (312)
89 2z81_A CD282 antigen, TOLL-lik 99.0 3.8E-10 1.3E-14 97.0 7.3 91 72-171 49-140 (549)
90 4glp_A Monocyte differentiatio 99.0 2.8E-10 9.7E-15 91.5 5.9 90 74-168 92-183 (310)
91 3oja_A Leucine-rich immune mol 99.0 4.6E-10 1.6E-14 96.0 7.5 65 100-172 167-231 (487)
92 1xku_A Decorin; proteoglycan, 99.0 7.4E-10 2.5E-14 89.6 8.2 86 74-169 193-278 (330)
93 1ziw_A TOLL-like receptor 3; i 99.0 8.9E-10 3E-14 97.2 8.9 89 74-171 74-162 (680)
94 4ecn_A Leucine-rich repeat pro 99.0 9.5E-10 3.2E-14 100.2 8.8 88 74-173 729-824 (876)
95 2z7x_B TOLL-like receptor 1, v 99.0 7.7E-10 2.6E-14 94.6 7.7 85 76-173 3-87 (520)
96 2ft3_A Biglycan; proteoglycan, 99.0 6E-10 2.1E-14 90.2 6.3 86 74-169 194-279 (332)
97 1wwl_A Monocyte differentiatio 99.0 7E-10 2.4E-14 89.3 6.3 92 73-171 149-245 (312)
98 4fmz_A Internalin; leucine ric 99.0 1.3E-09 4.5E-14 88.4 7.9 85 74-171 244-328 (347)
99 3j0a_A TOLL-like receptor 5; m 99.0 1.3E-09 4.3E-14 99.0 8.3 91 73-171 48-140 (844)
100 2z80_A TOLL-like receptor 2, v 98.9 1.5E-09 5E-14 88.7 7.6 84 73-165 76-160 (353)
101 2xwt_C Thyrotropin receptor; s 98.9 7.4E-10 2.5E-14 85.6 5.3 84 73-167 55-144 (239)
102 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 2.9E-09 9.8E-14 92.2 9.4 85 76-173 34-118 (562)
103 1h6t_A Internalin B; cell adhe 98.9 3.1E-09 1.1E-13 84.9 8.6 61 99-167 131-191 (291)
104 1h6t_A Internalin B; cell adhe 98.9 3.6E-09 1.2E-13 84.5 8.4 66 98-171 108-173 (291)
105 4fmz_A Internalin; leucine ric 98.9 1.8E-09 6.3E-14 87.6 6.1 83 72-167 264-346 (347)
106 1m9s_A Internalin B; cell inva 98.9 5.9E-09 2E-13 91.6 9.2 63 98-168 127-189 (605)
107 4glp_A Monocyte differentiatio 98.9 8.4E-10 2.9E-14 88.7 3.4 63 99-168 221-286 (310)
108 1h6u_A Internalin H; cell adhe 98.9 7.6E-09 2.6E-13 83.2 8.8 79 74-167 86-164 (308)
109 3oja_A Leucine-rich immune mol 98.9 8.2E-09 2.8E-13 88.2 9.5 99 61-171 109-208 (487)
110 1xeu_A Internalin C; cellular 98.9 1.1E-08 3.9E-13 80.5 9.4 42 126-169 124-165 (263)
111 3cvr_A Invasion plasmid antige 98.9 2.5E-09 8.4E-14 93.4 6.0 44 62-115 49-93 (571)
112 3o53_A Protein LRIM1, AGAP0063 98.9 5.1E-09 1.7E-13 84.4 7.4 65 100-172 167-231 (317)
113 1h6u_A Internalin H; cell adhe 98.9 6.7E-09 2.3E-13 83.5 8.1 89 72-169 106-210 (308)
114 3o53_A Protein LRIM1, AGAP0063 98.8 1.3E-08 4.5E-13 81.9 9.4 61 101-167 190-250 (317)
115 1xeu_A Internalin C; cellular 98.8 5.8E-09 2E-13 82.2 7.0 65 97-169 123-187 (263)
116 1m9s_A Internalin B; cell inva 98.8 9.7E-09 3.3E-13 90.2 8.7 67 97-171 104-170 (605)
117 1o6v_A Internalin A; bacterial 98.8 1.2E-08 4.2E-13 86.3 8.1 41 126-168 349-389 (466)
118 3bz5_A Internalin-J, INLJ; leu 98.8 1.9E-08 6.5E-13 85.3 9.1 78 73-168 64-141 (457)
119 1o6v_A Internalin A; bacterial 98.7 1.5E-08 5.2E-13 85.7 6.3 85 72-171 286-370 (466)
120 1jl5_A Outer protein YOPM; leu 98.7 8.6E-08 2.9E-12 81.2 9.1 61 98-168 149-209 (454)
121 2ast_B S-phase kinase-associat 98.6 1.4E-08 4.7E-13 81.9 3.9 61 100-164 91-152 (336)
122 2ca6_A RAN GTPase-activating p 98.6 5.2E-09 1.8E-13 86.4 0.6 67 98-168 212-288 (386)
123 1ds9_A Outer arm dynein; leuci 98.6 2.3E-10 7.8E-15 86.3 -7.2 66 101-172 92-158 (198)
124 1jl5_A Outer protein YOPM; leu 98.6 4.3E-08 1.5E-12 83.1 6.0 62 102-171 337-415 (454)
125 3bz5_A Internalin-J, INLJ; leu 98.6 1.6E-07 5.6E-12 79.6 9.4 78 74-169 171-248 (457)
126 3g06_A SSPH2 (leucine-rich rep 98.6 7.3E-08 2.5E-12 84.9 7.3 63 101-172 240-302 (622)
127 2ca6_A RAN GTPase-activating p 98.6 1.1E-08 3.8E-13 84.4 1.8 94 73-171 216-320 (386)
128 2ast_B S-phase kinase-associat 98.6 8.5E-09 2.9E-13 83.2 0.8 88 73-168 93-183 (336)
129 3rw6_A Nuclear RNA export fact 98.6 5.7E-08 2E-12 77.0 5.3 68 99-172 167-238 (267)
130 1ds9_A Outer arm dynein; leuci 98.6 5.6E-10 1.9E-14 84.1 -6.2 83 72-168 47-129 (198)
131 3cvr_A Invasion plasmid antige 98.6 7.4E-08 2.5E-12 84.0 6.3 38 133-171 210-247 (571)
132 3goz_A Leucine-rich repeat-con 98.5 1.7E-08 5.7E-13 82.8 1.2 90 74-168 52-152 (362)
133 3rw6_A Nuclear RNA export fact 98.4 2.1E-07 7.3E-12 73.7 4.3 82 72-160 169-257 (267)
134 3g06_A SSPH2 (leucine-rich rep 98.3 1.7E-06 5.7E-11 76.2 8.6 58 102-172 221-278 (622)
135 1z7x_W Ribonuclease inhibitor; 98.3 7.1E-08 2.4E-12 80.9 -0.5 72 98-169 337-413 (461)
136 3goz_A Leucine-rich repeat-con 98.3 3.4E-07 1.2E-11 75.0 3.2 95 72-171 21-126 (362)
137 3sb4_A Hypothetical leucine ri 98.2 3.3E-06 1.1E-10 68.1 7.5 88 73-172 226-314 (329)
138 4ay9_X Follicle-stimulating ho 98.2 4.7E-06 1.6E-10 67.9 7.6 87 74-172 129-219 (350)
139 1z7x_W Ribonuclease inhibitor; 98.2 1.2E-07 4.2E-12 79.4 -1.9 37 131-167 314-354 (461)
140 3un9_A NLR family member X1; l 98.1 3.5E-07 1.2E-11 75.6 0.4 65 99-167 180-252 (372)
141 3un9_A NLR family member X1; l 98.1 5.7E-07 2E-11 74.4 1.2 65 100-168 153-225 (372)
142 1io0_A Tropomodulin; LRR prote 98.0 1.5E-06 5.1E-11 64.8 0.8 89 74-167 66-164 (185)
143 1io0_A Tropomodulin; LRR prote 97.9 1.5E-06 5E-11 64.8 -0.1 96 72-168 35-137 (185)
144 3e4g_A ATP synthase subunit S, 97.8 8.5E-06 2.9E-10 60.5 2.8 84 73-165 61-150 (176)
145 3ogk_B Coronatine-insensitive 97.8 4.6E-06 1.6E-10 72.0 0.5 66 100-169 461-528 (592)
146 3sb4_A Hypothetical leucine ri 97.6 0.00011 3.7E-09 59.1 6.5 78 73-161 250-328 (329)
147 3rfe_A Platelet glycoprotein I 97.5 0.00031 1.1E-08 49.3 6.5 55 77-143 12-68 (130)
148 2p1m_B Transport inhibitor res 97.4 1.6E-05 5.5E-10 68.5 -1.0 63 101-167 455-519 (594)
149 2p1m_B Transport inhibitor res 97.2 3.6E-05 1.2E-09 66.3 -1.3 67 98-169 428-496 (594)
150 3ogk_B Coronatine-insensitive 97.2 0.00011 3.7E-09 63.3 1.5 65 100-168 162-234 (592)
151 2ra8_A Uncharacterized protein 96.8 0.00017 5.6E-09 59.4 -0.1 41 128-168 250-293 (362)
152 3rfe_A Platelet glycoprotein I 96.8 0.0026 9E-08 44.4 6.0 56 106-167 12-68 (130)
153 4fdw_A Leucine rich hypothetic 96.6 0.0056 1.9E-07 50.8 7.8 66 95-167 293-358 (401)
154 4fdw_A Leucine rich hypothetic 96.3 0.0066 2.3E-07 50.4 6.0 66 95-164 264-333 (401)
155 3e4g_A ATP synthase subunit S, 96.3 0.0026 8.8E-08 47.0 3.1 62 102-167 61-128 (176)
156 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0012 4.2E-08 49.6 1.2 91 73-164 41-136 (197)
157 2ra8_A Uncharacterized protein 96.1 0.0017 6E-08 53.2 1.6 66 101-167 251-320 (362)
158 4fs7_A Uncharacterized protein 95.5 0.033 1.1E-06 45.6 6.9 63 96-164 314-376 (394)
159 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0071 2.4E-07 45.4 2.5 70 98-167 37-111 (197)
160 4gt6_A Cell surface protein; l 95.0 0.09 3.1E-06 43.0 8.2 66 95-166 304-369 (394)
161 4h09_A Hypothetical leucine ri 94.3 0.094 3.2E-06 42.4 6.6 64 96-164 280-343 (379)
162 4h09_A Hypothetical leucine ri 93.7 0.21 7.3E-06 40.3 7.6 64 96-164 257-320 (379)
163 4gt6_A Cell surface protein; l 92.2 0.16 5.4E-06 41.5 4.8 65 95-167 327-391 (394)
164 4fs7_A Uncharacterized protein 87.5 1.2 3.9E-05 36.2 6.2 69 96-172 291-359 (394)
165 2lz0_A Uncharacterized protein 51.6 32 0.0011 22.1 5.0 39 96-139 14-52 (100)
166 3ajf_A Non-structural protein 23.1 29 0.00098 21.8 1.0 14 179-192 52-65 (94)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=6.1e-22 Score=160.69 Aligned_cols=136 Identities=28% Similarity=0.481 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCcc--ccceeEcCCC--CcEEEEEeCCCCCCCccccccCCccccCC
Q 029521 26 GCLEQERSALLQLKHFFNDDHRLQNWVDDENYSDCCQ--WERVECNNTT--GRVIKLDLTQTRKWESAEWYMNASLFTPF 101 (192)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~l~~~~l~~~~~~~l 101 (192)
.|.++|+++|++||+++..+..+.+|..+. +||. |.||+|+... ++|++|+++++.+..... + +..+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~---~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~--~-~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--I-PSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTS---CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE--C-CGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCC---CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc--c-ChhHhCC
Confidence 588899999999999997333688998766 7888 9999998533 789999999999873101 1 2345566
Q ss_pred CCCCEEecCC-CccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 102 QQLESLDLIG-NNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 102 ~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
++|++|++++ |.+.+.+|.. ++++++|++|++++|++++.+|..++++++|++|++++|.++|.+|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC
Confidence 6666666663 6666556555 5555555555555555555555555555555555555555555544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.4e-19 Score=162.61 Aligned_cols=139 Identities=26% Similarity=0.362 Sum_probs=101.2
Q ss_pred hcCCCCHHHHHHHHHHHhhCC-CCCCCCCCCCCCCCCCCccccceeEcCCCCcEEEEEeCCCCCCC----ccc-------
Q 029521 23 WSEGCLEQERSALLQLKHFFN-DDHRLQNWVDDENYSDCCQWERVECNNTTGRVIKLDLTQTRKWE----SAE------- 90 (192)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~~-~~~~l~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~----l~~------- 90 (192)
+++++.++|++||++||+++. |. .+.+|..+. +||.|.||+|+ .++|+.|+|+++.+.. ++.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~---~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNK---NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTS---CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCC---CCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 344556789999999999997 55 889998766 89999999998 5899999999987652 110
Q ss_pred c--------cc--CCccccCCCCCCEEecCCCccccccCc--ccccccCCCCCCcEEEccCCcCCccCchhc-cCCCCCC
Q 029521 91 W--------YM--NASLFTPFQQLESLDLIGNNIAGCVEN--EGLERLSRLNNLKFLHLDFNCFNNNIFSSL-GGLSSLR 157 (192)
Q Consensus 91 ~--------~l--~~~~~~~l~~L~~L~Ls~n~l~g~~p~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l-~~l~~L~ 157 (192)
+ .+ .+..+..+++|++|++++|.++|.+|. . ++++++|++|++++|++++.+|..+ .++++|+
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 0 00 124577788888888888888887776 5 7777777777777777777666554 5666666
Q ss_pred EEeccCCccccccC
Q 029521 158 HLSLAGNELDGSVD 171 (192)
Q Consensus 158 ~L~L~~N~l~g~ip 171 (192)
+|++++|.++|.+|
T Consensus 155 ~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 155 VLDLSANSISGANV 168 (768)
T ss_dssp EEECCSSCCEEETH
T ss_pred EEECCCCccCCcCC
Confidence 66666666665544
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=1.3e-18 Score=153.50 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHhhCC-C-CCC-------CCCCCCCCCCCCCccc---cceeEcCCCCcEEEEEeCCCCCCCccccccC
Q 029521 27 CLEQERSALLQLKHFFN-D-DHR-------LQNWVDDENYSDCCQW---ERVECNNTTGRVIKLDLTQTRKWESAEWYMN 94 (192)
Q Consensus 27 ~~~~~~~~l~~~~~~~~-~-~~~-------l~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~l~~~~l~ 94 (192)
....|+.||.++++++. + +.. ..+|+.+. ++|.| .||+|+. .++|++|+|+++.+. +. +
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~--l- 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GR--V- 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EE--E-
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcC-CCCEEEEEecCcccC--Cc--C-
Confidence 33469999999999986 2 332 23798876 89999 9999986 489999999999986 32 1
Q ss_pred CccccCCCCCCEEecCCCcc------------------------------------------------------------
Q 029521 95 ASLFTPFQQLESLDLIGNNI------------------------------------------------------------ 114 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l------------------------------------------------------------ 114 (192)
|..+.++++|+.|++++|.+
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 35688899999999988843
Q ss_pred ------------------ccccCcccccccCCCCCCcEEEccCCcCCcc-----------------Cchhcc--CCCCCC
Q 029521 115 ------------------AGCVENEGLERLSRLNNLKFLHLDFNCFNNN-----------------IFSSLG--GLSSLR 157 (192)
Q Consensus 115 ------------------~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-----------------~p~~l~--~l~~L~ 157 (192)
+| +|.. ++++++|++|++++|+++|. +|..++ ++++|+
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~ 252 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred ccccchhhhhhccccCCCcc-CCHH----HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence 34 6666 88889999999999999886 888888 899999
Q ss_pred EEeccCCccccccCCC
Q 029521 158 HLSLAGNELDGSVDIK 173 (192)
Q Consensus 158 ~L~L~~N~l~g~ip~~ 173 (192)
+|++++|.+.|.+|..
T Consensus 253 ~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTF 268 (636)
T ss_dssp EEEEECCTTCSSCCTT
T ss_pred EEEecCCcCCccChHH
Confidence 9999999988888843
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.2e-18 Score=153.43 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCC----CCCCCccc------------cceeEcCCCCcEEEEEeCCCCCCCc
Q 029521 25 EGCLEQERSALLQLKHFFNDDHRLQNWVDDE----NYSDCCQW------------ERVECNNTTGRVIKLDLTQTRKWES 88 (192)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~~W~~~~----~~~~~c~w------------~gv~c~~~~~~v~~L~L~~~~l~~l 88 (192)
++....|+.||++||+++..+ +|..+. +.+++|.| .||+|+. .++|+.|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~-- 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK-- 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE--
T ss_pred cccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC--
Confidence 344457999999999998621 676532 11134999 9999986 689999999999986
Q ss_pred cccccCCccccCCCCCCEEec-CCCccccc--------------------------------------------------
Q 029521 89 AEWYMNASLFTPFQQLESLDL-IGNNIAGC-------------------------------------------------- 117 (192)
Q Consensus 89 ~~~~l~~~~~~~l~~L~~L~L-s~n~l~g~-------------------------------------------------- 117 (192)
+.+ |..+.++++|+.|+| ++|.++|.
T Consensus 337 G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 337 GRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp EEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 321 346788888888888 77766554
Q ss_pred --------------------------cCcccccccCCCCCCcEEEccCCcCCc-----------------cCchhcc--C
Q 029521 118 --------------------------VENEGLERLSRLNNLKFLHLDFNCFNN-----------------NIFSSLG--G 152 (192)
Q Consensus 118 --------------------------~p~~~~~~~~~l~~L~~L~Ls~N~l~g-----------------~~p~~l~--~ 152 (192)
+|.. ++++++|++|++++|+++| .+|..++ +
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred ccccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 5554 7888888888888888887 3888877 8
Q ss_pred CCCCCEEeccCCccccccCC
Q 029521 153 LSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip~ 172 (192)
+++|++|+|++|.+.|.+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCG
T ss_pred CCCCCEEECcCCCCCccChH
Confidence 88888888888888888884
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=7e-16 Score=116.59 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=86.4
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.|+.+.|.. ....+++|++++|.++.+.. ...+..+++|++|++++|.+++..|.. +..+++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~ 79 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASH 79 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCTT
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCccc
Confidence 7898888874 12378999999999876543 124788999999999999999877777 889999
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
|++|++++|++++..|..|.++++|++|+|++|++++.+|.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 99999999999988888888999999999999999988774
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=2.2e-17 Score=134.79 Aligned_cols=135 Identities=14% Similarity=0.171 Sum_probs=109.1
Q ss_pred cCCCCHHHHHHHHHHHhhCC--CCCCCCCCC----CCCCCCCCccccceeEcC--------CCCcEEEEEeCCCCCCCcc
Q 029521 24 SEGCLEQERSALLQLKHFFN--DDHRLQNWV----DDENYSDCCQWERVECNN--------TTGRVIKLDLTQTRKWESA 89 (192)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~--~~~~l~~W~----~~~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~l~ 89 (192)
..++..+++++|++||..+. +.+....|. ... ++|.|.|+.|.. ...+|+.|++++|.++.++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~---~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp 97 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP---QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP 97 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCT---TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccc---cccccCCcchhhhHHHHhcccccceeEEEccCCCchhcC
Confidence 34555678999999999874 334456683 333 789999999952 3468999999999998654
Q ss_pred ccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 90 EWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 90 ~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
. .+..+++|++|++++|.++ .+|.. ++.+++|++|++++|+++ .+|..++++++|++|++++|++.|.
T Consensus 98 ~------~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 98 D------QAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp S------CGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred h------hhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 3 4677999999999999998 78887 889999999999999998 7888899999999999999988888
Q ss_pred cCCC
Q 029521 170 VDIK 173 (192)
Q Consensus 170 ip~~ 173 (192)
+|..
T Consensus 166 ~p~~ 169 (328)
T 4fcg_A 166 LPEP 169 (328)
T ss_dssp CCSC
T ss_pred cChh
Confidence 8864
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=5.6e-15 Score=109.64 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=86.7
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.|+.+.|.. ....++.|++++|.++.+. +..|..+++|+.|++++|.+++..+.. |..+++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~ 79 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQ 79 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTT
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhh----ccCCCC
Confidence 7888888864 2357889999999998654 367889999999999999999755554 789999
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|++|++++|++++..+..|..+++|++|+|++|.+++..+
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999998777789999999999999999986654
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-14 Score=107.79 Aligned_cols=102 Identities=24% Similarity=0.371 Sum_probs=82.6
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.|.++.|.. ....+++|++++|.++.+. +..+..+++|+.|++++|.+++..+.. +..+++
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~ 77 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKLTK 77 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTT
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeC-----HHHhcCcccccEEECCCCcceEeChhH----ccCCCc
Confidence 7899999974 2347899999999987544 356788899999999999998654444 788999
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 9999999999997777778889999999999999984433
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.2e-14 Score=112.15 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=59.6
Q ss_pred CCCCC-ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccc
Q 029521 56 NYSDC-CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLER 125 (192)
Q Consensus 56 ~~~~~-c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~ 125 (192)
|+..| |.|..+.|.. ....+++|++++|.++.++. ..|..+++|+.|++++|.+++..|..
T Consensus 5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~-----~~~~~l~~L~~L~Ls~N~i~~~~~~~---- 75 (220)
T 2v9t_B 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPP-----GAFSPYKKLRRIDLSNNQISELAPDA---- 75 (220)
T ss_dssp SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECT-----TSSTTCTTCCEEECCSSCCCEECTTT----
T ss_pred CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCH-----hHhhCCCCCCEEECCCCcCCCcCHHH----
Confidence 33344 7888898864 12468899999998875432 34555555556666655555544444
Q ss_pred cCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 126 LSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
|.++++|++|++++|++++..+..|.++++|++|+|++|++++.
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 55555555555555555533333344455555555555555443
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.7e-14 Score=109.72 Aligned_cols=99 Identities=24% Similarity=0.380 Sum_probs=57.9
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.|.++.|.. ...++++|++++|.++.++. ..+..+++|+.|++++|.+++..+.. +..+++
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~ 77 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPN-----GVFDELTSLTQLYLGGNKLQSLPNGV----FNKLTS 77 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTT
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCCh-----hhhcccccCcEEECCCCccCccChhh----cCCCCC
Confidence 7899999974 13468899999998865432 34455556666666666555432222 445555
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
|++|++++|++++..+..++.+++|++|++++|++++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc
Confidence 5555555555554433444555555555555555543
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=108.70 Aligned_cols=101 Identities=27% Similarity=0.350 Sum_probs=85.2
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.+..+.|.. ....+++|++++|.++.++ ..|..+++|+.|++++|.+++..+.. |.++++
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~~ 79 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP------KELSNYKHLTLIDLSNNRISTLSNQS----FSNMTQ 79 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC------GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH------HHhhcccCCCEEECCCCcCCEeCHhH----ccCCCC
Confidence 6788888864 2347899999999998654 36888999999999999999766666 899999
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|++|++++|++++..|..|.++++|++|+|++|++++..+
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9999999999998888889999999999999999985433
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.7e-14 Score=111.86 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCC
Q 029521 59 DCCQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRL 129 (192)
Q Consensus 59 ~~c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l 129 (192)
..|+|++|.|.. ....++.|++++|.+..+.. ..|..+++|+.|++++|.++...+.. +..+
T Consensus 17 ~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~l~~i~~~~----~~~l 87 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQLGALPVGV----FDSL 87 (229)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCCCCCcChhh----cccC
Confidence 579999999974 23468899999998875432 34445555555555555554322222 4444
Q ss_pred CCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 130 NNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 55555555555554433333444444444444444444
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=111.10 Aligned_cols=107 Identities=23% Similarity=0.241 Sum_probs=57.5
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCcccc--------------------ccCCccccCCCCCCEEecCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEW--------------------YMNASLFTPFQQLESLDLIG 111 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~Ls~ 111 (192)
|.|..+.|.. ....+++|++++|.++.+... .+.+..|..+++|+.|++++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 6788888763 123467788888877644220 01122344445555555555
Q ss_pred CccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 112 NNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 112 n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|.+++..|.. +..+++|++|++++|++++..|..|..+++|++|+|++|++++..|
T Consensus 91 N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 91 NRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 5554433333 5555555555555555555555555555555555555555554444
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.54 E-value=9.4e-15 Score=131.32 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=90.4
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
..++.|++++|.++.. .|..+..++.|+.|++++|.++|.+|.. ++++++|++||+++|+++|.+|..++.
T Consensus 632 ~~L~~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp BCCCEEECCSSCCBSC-----CCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccEEECcCCccccc-----CCHHHhccccCCEEeCcCCccCCCCChH----HhCCCCCCEEECCCCcccCcCChHHhC
Confidence 4688999999998732 1467899999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCEEeccCCccccccCCCCCCCCCCc
Q 029521 153 LSSLRHLSLAGNELDGSVDIKGKVSFIPS 181 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip~~~~~~~lp~ 181 (192)
+++|++|++++|+++|.||..+.+..++.
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred CCCCCEEECcCCcccccCCCchhhccCCH
Confidence 99999999999999999998877666653
No 15
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2e-13 Score=101.71 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=79.5
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|....+.|.. ....++.|++++|.+..+. +..|..+++|+.|++++|.+++..+.. |..+++
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~ 82 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQ 82 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhH----hCCcch
Confidence 4555566653 2346889999999987653 357888999999999999998744444 788999
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCcccccc
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSV 170 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~i 170 (192)
|++|++++|++++..+..|..+++|++|+|++|.++...
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999999999999766666999999999999999987543
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=4e-13 Score=105.16 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=43.1
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.+..+.. ..+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..+..|..+
T Consensus 36 ~l~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSD-----ATFRGLTKLTWLNLDYNQLQTLSAGV----FDDLTELGTLGLANNQLASLPLGVFDHL 106 (251)
T ss_dssp TCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCEEEccCCCcCccCH-----hHhcCcccCCEEECCCCcCCccCHhH----hccCCcCCEEECCCCcccccChhHhccc
Confidence 46667777776654332 33455555555555555555443333 4444555555555555544433444444
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|+|++|+++
T Consensus 107 ~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 107 TQLDKLYLGGNQLK 120 (251)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEEcCCCcCC
Confidence 44444444444444
No 17
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=2.7e-13 Score=102.26 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=82.6
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.++.+. +..|..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..+.
T Consensus 53 l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIE-----PNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp CTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSST
T ss_pred CCCCCEEECCCCCCCCcC-----HhHcCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 457999999999998653 367899999999999999999877776 89999999999999999999999999
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|+|++|.+++..+
T Consensus 124 ~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCEEEeCCCCccCcCc
Confidence 99999999999999998766
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=103.36 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=77.0
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.+..+. +..|..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..|..
T Consensus 81 ~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQ-----HKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp TTCCEEECCSSCCCCCC-----GGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CCCCEEECCCCccCccC-----HhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEECHHHhcC
Confidence 34566666666665433 356889999999999999999877877 999999999999999999988999999
Q ss_pred CCCCCEEeccCCccccccC
Q 029521 153 LSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip 171 (192)
+++|++|+|++|.+++..+
T Consensus 152 l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTCCEEECCSCCEECSGG
T ss_pred CCCCCEEEecCcCCcCCCc
Confidence 9999999999999997765
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=7.7e-13 Score=108.96 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=63.6
Q ss_pred CCCCCCC-ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCcccc-CCCCCCEEecCCCccccccCccc
Q 029521 54 DENYSDC-CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFT-PFQQLESLDLIGNNIAGCVENEG 122 (192)
Q Consensus 54 ~~~~~~~-c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~ 122 (192)
..|+..| |.+..+.|.. ....++.|+|++|.++.+.. ..+. .+++|+.|++++|.+++..+..
T Consensus 10 ~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~-----~~~~~~l~~L~~L~L~~N~i~~i~~~~- 83 (361)
T 2xot_A 10 VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRA-----EWTPTRLTNLHSLLLSHNHLNFISSEA- 83 (361)
T ss_dssp TTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECT-----TSSSSCCTTCCEEECCSSCCCEECTTT-
T ss_pred CCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccCh-----hhhhhcccccCEEECCCCcCCccChhh-
Confidence 3454444 7788888864 23357889999998875443 3344 5666666666666665544444
Q ss_pred ccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 123 LERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 123 ~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
|..+++|++|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 84 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 84 ---FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp ---TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence 55556666666666666554444555555566666655555543
No 20
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=4.6e-13 Score=109.26 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCC--ccccceeEcCC-----------CCcEEEEEeCC-CCCCCccccccCCccccCCCCCCEEecCCCccccccCccc
Q 029521 57 YSDC--CQWERVECNNT-----------TGRVIKLDLTQ-TRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEG 122 (192)
Q Consensus 57 ~~~~--c~w~gv~c~~~-----------~~~v~~L~L~~-~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~ 122 (192)
+..| |.|..+.|... ..+++.|+|++ |.++.+.. ..|..+++|+.|+|++|.+++..|..
T Consensus 2 p~~c~~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~- 75 (347)
T 2ifg_A 2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKSGLRFVAPDA- 75 (347)
T ss_dssp CSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSSCCCEECTTG-
T ss_pred CCcCccccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCCccceeCHHH-
Confidence 3355 88888888752 12477788875 77765442 46777888888888888888766665
Q ss_pred ccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 123 LERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 123 ~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
|.++++|++|+|++|+|++..+..+..++ |+.|+|.+|.+...
T Consensus 76 ---~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 76 ---FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ---GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ---hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 77788888888888888765555555554 88888888877643
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.40 E-value=4.9e-13 Score=112.53 Aligned_cols=106 Identities=26% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCccccc--eeEcCC--------CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCC
Q 029521 59 DCCQWER--VECNNT--------TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSR 128 (192)
Q Consensus 59 ~~c~w~g--v~c~~~--------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~ 128 (192)
..|.|.+ +.|... ..+++.|++++|.++.+. +..+..+++|++|++++|.+.+.+++.. +..
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~ 77 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRG 77 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEEC-----TTTTSSCTTCCEEECCCCSTTCEECTTT---TTT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCC-----hhHhccCccccEEECcCCcccceECccc---ccc
Confidence 3455544 777641 257899999999887543 2456677777777777777765554331 666
Q ss_pred CCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 129 LNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 129 l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+++|++|++++|++++..|..++++++|++|++++|.+++.+|.
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence 77777777777777766666677777777777777777665443
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.4e-12 Score=103.14 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=44.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.+++|++++|.+..++. ..|..+++|++|++++|.++. +|... +..+++|++|++++|++++..+..+..+
T Consensus 38 ~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~-i~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPS-----KAFHRLTKLRLLYLNDNKLQT-LPAGI---FKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TCSEEECCSSCCSCCCT-----TSSSSCTTCCEEECCSSCCSC-CCTTT---TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECcCCCCCeeCH-----HHhcCCCCCCEEECCCCccCe-eChhh---hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 46677777776654332 345556666666666666553 22221 3445555555555555554333444444
Q ss_pred CCCCEEeccCCcccc
Q 029521 154 SSLRHLSLAGNELDG 168 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g 168 (192)
++|++|++++|++++
T Consensus 109 ~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 109 VNLAELRLDRNQLKS 123 (270)
T ss_dssp SSCCEEECCSSCCCC
T ss_pred cCCCEEECCCCccCe
Confidence 555555555554443
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.5e-12 Score=106.48 Aligned_cols=103 Identities=30% Similarity=0.373 Sum_probs=83.9
Q ss_pred CCccccceeEcC-----------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccC
Q 029521 59 DCCQWERVECNN-----------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS 127 (192)
Q Consensus 59 ~~c~w~gv~c~~-----------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~ 127 (192)
..|.|.++ |+. ...++++|++++|.++.++. ..+..+++|+.|++++|.+++..|.. +.
T Consensus 28 ~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 97 (353)
T 2z80_A 28 LSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDS----FS 97 (353)
T ss_dssp CEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred CCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhh----cC
Confidence 46788776 542 13478999999999876543 56888999999999999999866766 89
Q ss_pred CCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 128 RLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 128 ~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
++++|++|++++|++++..+..++++++|++|++++|+++ .+|.
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 9999999999999999665566899999999999999998 4565
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=1.4e-12 Score=113.31 Aligned_cols=91 Identities=24% Similarity=0.243 Sum_probs=75.2
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
+..+++|+|++|.++.++. ..|.++++|++|+|++|.+++..|.. |.++++|++|+|++|++++..+..|.
T Consensus 51 p~~~~~LdLs~N~i~~l~~-----~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCCCEEEeeCCCCCCCCH-----HHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 3478999999999986653 57888999999999999998755555 88899999999999999876677888
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
++++|++|+|++|++++..+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCCEEECCCCcCCCCCh
Confidence 89999999999998885443
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=2.2e-12 Score=99.28 Aligned_cols=91 Identities=27% Similarity=0.330 Sum_probs=74.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|+|++|.+..+. +..|..+++|+.|++++|.++. +|... |..+++|++|++++|++++..|..|.
T Consensus 55 l~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELA-----PDAFQGLRSLNSLVLYGNKITE-LPKSL---FEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp CTTCCEEECCSSCCCEEC-----TTTTTTCSSCCEEECCSSCCCC-CCTTT---TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCcCCCcC-----HHHhhCCcCCCEEECCCCcCCc-cCHhH---ccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 357899999999887543 3578889999999999999985 44431 78889999999999999988888899
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|+|++|++++..+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCCEEECCCCcCCEECH
Confidence 99999999999999986554
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=107.85 Aligned_cols=98 Identities=23% Similarity=0.229 Sum_probs=78.3
Q ss_pred ccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCc
Q 029521 63 WERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLK 133 (192)
Q Consensus 63 w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~ 133 (192)
+..|.|.. ....++.|+|++|.+..+.. ..|..+++|+.|++++|.+++..+.. |.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-----NSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT-----TTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH-----HHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence 56788863 23468899999999876543 56888999999999999988755555 88889999
Q ss_pred EEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 134 FLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 134 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+|++++|++++..+..|..+++|++|+|++|.+++.
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccccc
Confidence 999999999866666788889999999999988744
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.37 E-value=2.5e-12 Score=110.62 Aligned_cols=100 Identities=26% Similarity=0.283 Sum_probs=83.3
Q ss_pred CCccccceeEcC-----------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccC
Q 029521 59 DCCQWERVECNN-----------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS 127 (192)
Q Consensus 59 ~~c~w~gv~c~~-----------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~ 127 (192)
..|.|.|+ |+. ...++++|++++|.++.+. +..|..+++|++|++++|.+++..|.. +.
T Consensus 2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~ 71 (549)
T 2z81_A 2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FY 71 (549)
T ss_dssp CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TT
T ss_pred ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----cc
Confidence 35888887 752 1247999999999987543 356888999999999999999877666 89
Q ss_pred CCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 128 RLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 128 ~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++++|++++..|..++++++|++|++++|.+++
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 99999999999999998877789999999999999999885
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.36 E-value=1.5e-12 Score=106.09 Aligned_cols=72 Identities=21% Similarity=0.097 Sum_probs=53.3
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
.+..+++|+.|++++|.+.+.+|.. ++.+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+|.
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 3566777777777777777777766 77777777777777777777777777777777777777777777774
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=108.32 Aligned_cols=100 Identities=26% Similarity=0.306 Sum_probs=69.0
Q ss_pred ccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCc
Q 029521 63 WERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLK 133 (192)
Q Consensus 63 w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~ 133 (192)
|..|.|.. ....++.|++++|.++.+.. ..|..+++|+.|++++|.+++..|.. |.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQ-----DEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECH-----hHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence 56788863 23468899999998875542 45677777777777777777665665 77777777
Q ss_pred EEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 134 FLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 134 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
+|++++|++++..+..|.++++|++|+|++|.+++..|
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 77777777765444556667777777777777665544
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=1.5e-12 Score=104.35 Aligned_cols=97 Identities=25% Similarity=0.401 Sum_probs=58.7
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccc--cCcccccccCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC--VENEGLERLSRL 129 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~--~p~~~~~~~~~l 129 (192)
|.|.++.|.. ....+++|++++|.++.++. ..|..+++|+.|++++|.++.. .|.. +..+
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~ 77 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQS----DFGT 77 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEEEEEEHH----HHSC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcccCcccc----cccc
Confidence 7899999974 23478999999999876543 4567778888888888877632 2332 3344
Q ss_pred CCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 130 NNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 130 ~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~ 114 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE
T ss_pred cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccc
Confidence 44455555444444 23333444444444444444443
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=2e-12 Score=100.30 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCc-cccccCcccccccCCCCCCcEEEccC-CcCCccCchh
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNN-IAGCVENEGLERLSRLNNLKFLHLDF-NCFNNNIFSS 149 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p~~ 149 (192)
...++.|++++|.++.++. ..|..+++|+.|++++|. +++..+.. |..+++|++|++++ |++++..+..
T Consensus 30 ~~~l~~L~l~~n~l~~i~~-----~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPS-----HAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESCCCSEECT-----TTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCcccEEEEeCCcceEECH-----HHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3578999999999986543 568889999999999997 77544445 88999999999998 9999777778
Q ss_pred ccCCCCCCEEeccCCccccccCC
Q 029521 150 LGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 150 l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
|.++++|++|++++|.+++ +|.
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc
Confidence 9999999999999999986 675
No 32
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=3.5e-12 Score=94.55 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=78.7
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.++.++ +..+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..+.
T Consensus 51 l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~ 121 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLP-----DGVFDKLTKLTILYLHENKLQSLPNGV----FDKLTQLKELALDTNQLKSVPDGIFD 121 (177)
T ss_dssp CTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cccccEEECCCCcceEeC-----hhHccCCCccCEEECCCCCccccCHHH----hhCCcccCEEECcCCcceEeCHHHhc
Confidence 357999999999998654 356789999999999999999765555 78999999999999999976666678
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|++++|.+++..|
T Consensus 122 ~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 122 RLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred CCcccCEEEecCCCeeccCc
Confidence 99999999999999998765
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=6.5e-12 Score=97.15 Aligned_cols=90 Identities=24% Similarity=0.248 Sum_probs=74.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|+|++|.+..++. ..|..+++|+.|++++|.+++..+.. +..+++|++|++++|+++ .+|..+.
T Consensus 63 l~~L~~L~L~~N~l~~i~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPV-----GVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp CTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred ccCCcEEECCCCCCCCcCh-----hhcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCcccc
Confidence 3578999999999876543 56788999999999999998755555 788999999999999998 7888889
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|+|++|++++..+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCT
T ss_pred cCCCCCEEECCCCcCCccCH
Confidence 99999999999999985433
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=6.7e-12 Score=106.06 Aligned_cols=98 Identities=24% Similarity=0.250 Sum_probs=82.1
Q ss_pred ccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCc
Q 029521 63 WERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLK 133 (192)
Q Consensus 63 w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~ 133 (192)
+..+.|.. ...+++.|+|++|.+..+. +..|..+++|+.|++++|.+++..|.. |.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-----ADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-----HHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence 56788864 2347899999999987654 367889999999999999999876666 89999999
Q ss_pred EEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 134 FLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 134 ~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+|++++|++++..+..|..+++|++|+|++|++++.
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI 162 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence 999999999977777799999999999999999843
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=9e-12 Score=98.91 Aligned_cols=87 Identities=22% Similarity=0.180 Sum_probs=42.3
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCc-CCccCchhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNC-FNNNIFSSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~l~ 151 (192)
..+++|++++|.++.++. ..|..+++|+.|++++|.+++..|.. +..+++|++|++++|+ ++...|..+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA-----ASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCcCCccCH-----HHcccCCCCCEEECCCCccceeCHhh----cCCccCCCEEeCCCCCCccccCHHHhc
Confidence 457777777777654332 23444555555555555544433333 4444444444444443 3333344444
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++++|.+++
T Consensus 103 ~l~~L~~L~l~~n~l~~ 119 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQE 119 (285)
T ss_dssp TCTTCCEEECTTSCCCC
T ss_pred CCcCCCEEECCCCcCCE
Confidence 44444444444444443
No 36
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=8.6e-12 Score=97.49 Aligned_cols=89 Identities=26% Similarity=0.319 Sum_probs=54.1
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.++.++ +..|..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..|+.+
T Consensus 84 ~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 84 ELGTLGLANNQLASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCEEECCCCcccccC-----hhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcC
Confidence 3444455544444322 234556666667777776666433333 5667777777777777775555567777
Q ss_pred CCCCEEeccCCccccccC
Q 029521 154 SSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip 171 (192)
++|++|+|++|++++..|
T Consensus 155 ~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp TTCCEEECCSSCCSCCCT
T ss_pred cCCCEEECCCCcCCccCH
Confidence 777777777777764444
No 37
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=8.9e-12 Score=92.22 Aligned_cols=85 Identities=22% Similarity=0.157 Sum_probs=73.8
Q ss_pred EEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCC
Q 029521 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLS 154 (192)
Q Consensus 75 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 154 (192)
.+++++++|.++.++. .+ .+.++.|++++|.+++..|.. |..+++|++|++++|++++..+..|.+++
T Consensus 11 ~~~l~~s~n~l~~ip~------~~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT------GI--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCCCcCccCc------cC--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCC
Confidence 3579999999987654 22 378999999999999877777 99999999999999999987777889999
Q ss_pred CCCEEeccCCccccccC
Q 029521 155 SLRHLSLAGNELDGSVD 171 (192)
Q Consensus 155 ~L~~L~L~~N~l~g~ip 171 (192)
+|++|+|++|+|++..|
T Consensus 79 ~L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPR 95 (170)
T ss_dssp TCCEEECCSSCCCCCCT
T ss_pred CCCEEECCCCccCEeCH
Confidence 99999999999996555
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=9.9e-12 Score=94.34 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=38.9
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
++++|++++|.++.++. ..|..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..+
T Consensus 53 ~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 123 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPN-----GVFNKLTSLTYLNLSTNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKL 123 (208)
T ss_dssp TCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCcEEECCCCccCccCh-----hhcCCCCCcCEEECCCCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccC
Confidence 45555555555543321 23444445555555555444322222 3444444444444444443333334444
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|++++|+++
T Consensus 124 ~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 124 TQLKDLRLYQNQLK 137 (208)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CcCCEEECCCCccc
Confidence 44444444444444
No 39
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=7.4e-12 Score=94.56 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.++.+. +..|..+++|+.|++++|.+++..|.. |..+++|++|++++|++++..+..|.
T Consensus 53 l~~L~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp CTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred ccCCCEEECCCCcCCEeC-----HhHccCCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhh
Confidence 357999999999998654 367899999999999999999876666 99999999999999999976667799
Q ss_pred CCCCCCEEeccCCcccccc
Q 029521 152 GLSSLRHLSLAGNELDGSV 170 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~i 170 (192)
.+++|++|++++|.+.+..
T Consensus 124 ~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TCTTCCEEECCSSCEECSG
T ss_pred cCccccEEEeCCCCeecCC
Confidence 9999999999999997543
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=2.9e-12 Score=103.51 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=67.1
Q ss_pred CccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCCCC
Q 029521 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDIKG 174 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~ 174 (192)
+..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 45677889999999999999876654 7788999999999999999999999999999999999999999999764
Q ss_pred C
Q 029521 175 K 175 (192)
Q Consensus 175 ~ 175 (192)
.
T Consensus 289 ~ 289 (313)
T 1ogq_A 289 N 289 (313)
T ss_dssp T
T ss_pred c
Confidence 3
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.29 E-value=5.1e-12 Score=114.60 Aligned_cols=102 Identities=23% Similarity=0.172 Sum_probs=63.3
Q ss_pred ccccceeEcCCCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCcccccc-CcccccccCCCCCCcEEEccC
Q 029521 61 CQWERVECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCV-ENEGLERLSRLNNLKFLHLDF 139 (192)
Q Consensus 61 c~w~gv~c~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~-p~~~~~~~~~l~~L~~L~Ls~ 139 (192)
|.|+.|.+ ...++++|+|++|.++.+. +..|.++++|++|++++|...+.+ |.. +.++++|++|++++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~-----~~~~~~l~~L~~LdLs~n~~~~~i~~~~----f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVT-----ASSFPFLEQLQLLELGSQYTPLTIDKEA----FRNLPNLRILDLGS 82 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEEC-----SSSCSSCCSCSEEEECTTCCCCEECTTT----TSSCTTCCEEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccC-----hhHCcccccCeEEeCCCCCCccccCHHH----hcCCCCCCEEECCC
Confidence 45666665 3577899999998886543 244566666666666666555455 333 56666666666666
Q ss_pred CcCCccCchhccCCCCCCEEeccCCccccccCCC
Q 029521 140 NCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 140 N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 173 (192)
|++++..|..|+++++|++|+|++|.+++.+|..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence 6666555666666666666666666666555543
No 42
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.7e-11 Score=91.19 Aligned_cols=84 Identities=19% Similarity=0.119 Sum_probs=72.4
Q ss_pred EEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCC
Q 029521 76 IKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSS 155 (192)
Q Consensus 76 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~ 155 (192)
+.++++++.++.++. .+ .+.|+.|++++|.+++..|.. +..+++|++|++++|++++..+..|.++++
T Consensus 15 ~~l~~~~n~l~~iP~------~~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA------GI--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccCC------Cc--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 678999999987654 23 278999999999999877777 999999999999999999766667899999
Q ss_pred CCEEeccCCccccccC
Q 029521 156 LRHLSLAGNELDGSVD 171 (192)
Q Consensus 156 L~~L~L~~N~l~g~ip 171 (192)
|++|+|++|+|++..+
T Consensus 83 L~~L~L~~N~l~~l~~ 98 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPR 98 (174)
T ss_dssp CCEEECCSSCCCCCCT
T ss_pred hhEEECCCCccceeCH
Confidence 9999999999995544
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=2.2e-11 Score=96.33 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=35.7
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..++.+++|++|++++|++++..|
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 444555555555555555433332 4455555555555555554444445555555555555555554333
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=2.9e-11 Score=95.60 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=69.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.++.+. +..+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..++.
T Consensus 85 ~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLP-----NGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp TTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCccCccC-----hhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhcc
Confidence 45667777777665433 345778888888899888888755555 788889999999999988777777888
Q ss_pred CCCCCEEeccCCccccccC
Q 029521 153 LSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip 171 (192)
+++|++|++++|++++..|
T Consensus 156 l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CTTCCEEECCSSCCCCCCT
T ss_pred CccCCEEECCCCCcCccCH
Confidence 8999999999998886554
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.26 E-value=1.9e-11 Score=106.38 Aligned_cols=90 Identities=23% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..++++|++++|.++.+.. ..|.++++|++|++++|.+++..|.. |.++++|++|++++|++++..|..|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKS-----YSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCCCcCEeCh-----hhccCCccCcEEeCCCCcccccCHHH----hhchhhcCEeECCCCcccccChhhcC
Confidence 3568889999988865432 45667777777777777777655555 67777777777777777766677777
Q ss_pred CCCCCCEEeccCCcccccc
Q 029521 152 GLSSLRHLSLAGNELDGSV 170 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~i 170 (192)
++++|++|++++|.+++..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TCTTCCEEECTTSCCCCSS
T ss_pred CcccCCEEEccCCcccccc
Confidence 7777777777777776443
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=1.4e-11 Score=106.87 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=72.9
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.... .+.+..|..+++|+.|++++|.+++..|.. |.++++|++|++++|++++..|..|.++
T Consensus 470 ~L~~L~Ls~N~~~~----~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 470 SLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TCCEEECTTCEEGG----GEECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred hhhhhhhhhccccc----ccCchhhhhccccCEEECCCCccCCcChHH----HcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 45666666665321 012456888899999999999998877777 8899999999999999998888889999
Q ss_pred CCCCEEeccCCccccccCCC
Q 029521 154 SSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip~~ 173 (192)
++|++|+|++|++++..|..
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSC
T ss_pred CCCCEEECCCCcCCCCCHHH
Confidence 99999999999999877753
No 47
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=2e-11 Score=99.95 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=86.1
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|++..|.|.. ....+++|+|++|+++.++. +.|.++++|++|++++|.+.+.+|... |.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQK-----GAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECT-----TSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCH-----HHHcCCCCCCEEECcCCCCCCccChhH---hhcchh
Confidence 7889999974 22468999999999987654 679999999999999999988787653 788888
Q ss_pred CcE-EEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 132 LKF-LHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 132 L~~-L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
+++ +.++.|+++...|..|..+++|++|++++|++++..+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence 775 6677899998888899999999999999999985433
No 48
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=8.2e-12 Score=89.92 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc-Cchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN-IFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~l 150 (192)
..+++.|++++|.++.+ ..+..+++|+.|++++|.+++.+|.. +..+++|++|++++|++++. .|..+
T Consensus 41 l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp CTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred cCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHH
Confidence 35789999999988755 24778899999999999998877776 77789999999999999863 44788
Q ss_pred cCCCCCCEEeccCCccccccC
Q 029521 151 GGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip 171 (192)
+.+++|++|++++|.+++..+
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTT
T ss_pred hhCCCCCEEeCcCCcccchHH
Confidence 999999999999999986533
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.23 E-value=5.3e-11 Score=93.98 Aligned_cols=86 Identities=26% Similarity=0.284 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.++.++. ..+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..|..+.++
T Consensus 29 ~l~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEECT-----TTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccEEECCCCcccccCH-----hHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCC
Confidence 46777777777654432 34555666666666666665433333 5555666666666666655555555555
Q ss_pred CCCCEEeccCCcccc
Q 029521 154 SSLRHLSLAGNELDG 168 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g 168 (192)
++|++|++++|.+++
T Consensus 100 ~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 100 SSLQKLVAVETNLAS 114 (276)
T ss_dssp TTCCEEECTTSCCCC
T ss_pred ccccEEECCCCCccc
Confidence 555555555555554
No 50
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.7e-11 Score=105.63 Aligned_cols=89 Identities=26% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccC-chhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNI-FSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p~~l 150 (192)
..+++.|+|++|.++.++ ..+..+++|+.|++++|.+++ +| . ++.+++|++|++++|++++.. |..+
T Consensus 462 l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALP------PALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp GTTCCEEECCSSCCCCCC------GGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred cccCcEeecCcccccccc------hhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 357899999999998654 468899999999999999997 67 5 999999999999999999877 9999
Q ss_pred cCCCCCCEEeccCCccccccCC
Q 029521 151 GGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+.+++|++|+|++|.+++.+|.
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSC
T ss_pred hcCCCCCEEEecCCcCCCCccH
Confidence 9999999999999999987664
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=9.6e-12 Score=91.31 Aligned_cols=88 Identities=25% Similarity=0.258 Sum_probs=70.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccC-chhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNI-FSSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~-p~~l~ 151 (192)
.+++.|++++|.++.+ ..+..+++|+.|++++|.+++.+|.. +..+++|++|++++|++++.. +..+.
T Consensus 49 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHh
Confidence 5688888988888754 24778889999999999998777765 667889999999999998632 26788
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|++++|.+++..+
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTT
T ss_pred cCCCCCEEEeeCCcCcchHH
Confidence 89999999999999885533
No 52
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=2.7e-11 Score=87.16 Aligned_cols=84 Identities=29% Similarity=0.362 Sum_probs=74.6
Q ss_pred CcEEEEEeCCCCCC--CccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 73 GRVIKLDLTQTRKW--ESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 73 ~~v~~L~L~~~~l~--~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
.+++.|++++|.+. .+ +..+..+++|+.|++++|.+++. .. +..+++|++|++++|++++.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL------EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBC------CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCChhHH------HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHh
Confidence 56899999999986 33 24678899999999999999875 44 8999999999999999998899989
Q ss_pred cCCCCCCEEeccCCcccc
Q 029521 151 GGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g 168 (192)
+.+++|++|++++|.+++
T Consensus 85 ~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HHCTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCcCCC
Confidence 899999999999999986
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=3.6e-11 Score=101.08 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=48.3
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.++++|++++|.+..+. +..+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..+.+
T Consensus 299 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 299 TDLEQLTLAQNEINKID-----DNAFWGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCEEECCCCcccccC-----hhHhcCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChhhccc
Confidence 45777777777765432 234555555555555555555444444 555555555555555555555555555
Q ss_pred CCCCCEEeccCCcccc
Q 029521 153 LSSLRHLSLAGNELDG 168 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g 168 (192)
+++|++|++++|++++
T Consensus 370 l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 370 LPNLKELALDTNQLKS 385 (455)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred cccccEEECCCCcccc
Confidence 5555555555555553
No 54
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.21 E-value=1.1e-10 Score=93.43 Aligned_cols=84 Identities=26% Similarity=0.178 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..++ ..+..+++|+.|++++|.+++..|.. |..+++|++|++++|++++..+..|..+
T Consensus 78 ~L~~L~Ls~N~l~~l~------~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLP------LLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp TCCEEECCSSCCSSCC------CCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cCCEEECCCCcCCcCc------hhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcccc
Confidence 4555555555554332 13344555555555555555433333 4555555555555555554444444555
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|+|++|+++
T Consensus 148 ~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 148 PKLEKLSLANNNLT 161 (290)
T ss_dssp TTCCEEECTTSCCS
T ss_pred cCCCEEECCCCcCC
Confidence 55555555555554
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.21 E-value=4.8e-11 Score=103.83 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
...++.|++++|.++.+. +..|..+++|++|++++|.+.+..|.. |.++++|++|++++|++++..|..|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CTTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CCcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhc
Confidence 347889999999887543 345677777777777777777666665 77777777777777777766666677
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
++++|++|++++|.+++
T Consensus 103 ~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISS 119 (606)
T ss_dssp SCTTCCEEECTTSCCSC
T ss_pred ccccccEeeccccCccc
Confidence 77777777777776665
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=9.3e-11 Score=92.52 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=33.8
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..++.+++|++|++++|.+++
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 344444555555555544433333 4555555555555555554433445555555555555555553
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.20 E-value=6.9e-11 Score=95.82 Aligned_cols=95 Identities=28% Similarity=0.362 Sum_probs=66.6
Q ss_pred ccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCC
Q 029521 61 CQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNN 131 (192)
Q Consensus 61 c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~ 131 (192)
|.++.+.|.. ...+++.|++++|.+..++ +..+..+++|+.|++++|.+++..|.. +..+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-----KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----STTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-----HhHhhCCCCCcEEECCCCccCccCHhH----hhCcCC
Confidence 7899999864 1347899999999987543 346777888888888888887766666 777777
Q ss_pred CcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 132 LKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 132 L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
|++|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR 136 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence 777777777776 4444333 45555555555554
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=8.6e-11 Score=93.21 Aligned_cols=68 Identities=26% Similarity=0.299 Sum_probs=29.0
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+..+++|+.|++++|.+++..+.. ++.+++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhCCcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 334444444444444444322222 34444444444444444433333344444444444444444433
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=4.9e-11 Score=95.48 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.+... ..+..+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..+..+..+
T Consensus 151 ~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 151 SLEVLKMAGNSFQEN----FLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TCCEEECTTCEEGGG----EECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred CCCEEECCCCccccc----cchhHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChhhccCc
Confidence 444555555544320 11345667777788888888777665665 7777888888888888876666677778
Q ss_pred CCCCEEeccCCccccccCC
Q 029521 154 SSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip~ 172 (192)
++|++|++++|++++..|.
T Consensus 223 ~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp TTCCEEECTTSCCCBCSSS
T ss_pred ccCCEeECCCCCCcccCHH
Confidence 8888888888888776664
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=3.8e-11 Score=90.56 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=39.5
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..++ .+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..++.+
T Consensus 67 ~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-------PISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp TCSEEEEESCCCSCCG-------GGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred CCCEEEccCCCCCcch-------hhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 4555555555443221 2344455555555555554444444 4455555555555555554444445555
Q ss_pred CCCCEEeccCCc
Q 029521 154 SSLRHLSLAGNE 165 (192)
Q Consensus 154 ~~L~~L~L~~N~ 165 (192)
++|++|++++|.
T Consensus 136 ~~L~~L~L~~n~ 147 (197)
T 4ezg_A 136 PKVNSIDLSYNG 147 (197)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEEccCCC
Confidence 555555555554
No 61
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.4e-11 Score=89.20 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCch--hcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFS--SLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~--~l~ 151 (192)
.++.|++++|.++.+ ..+..+++|+.|++++|.+++ +|+.. +..+++|++|++++|+++ .+|. .+.
T Consensus 43 ~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICR-IGEGL---DQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCE-ECSCH---HHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCEEECCCCCCCcc-------cccccCCCCCEEECCCCcccc-cCcch---hhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 577777777777644 246677788888888888775 34331 467778888888888875 4554 677
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.+++|++|++++|.++
T Consensus 111 ~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT 126 (176)
T ss_dssp GCTTCCEEECCSSGGG
T ss_pred cCCCCCEEEecCCCCC
Confidence 7788888888888776
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=5.3e-11 Score=97.89 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|+|++|.++.+.. ..|..+++|+.|++++|.+++..+.. |..+++|++|++++|++++..|..|.
T Consensus 63 l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISS-----EAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp CTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccccCEEECCCCcCCccCh-----hhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhC
Confidence 3568888888888875442 46777888888888888887654444 77788888888888888777777777
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
++++|++|+|++|++++
T Consensus 134 ~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TCTTCCEEECCSSCCCS
T ss_pred CcccCCEEECCCCcCCe
Confidence 88888888888887774
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=8.9e-11 Score=95.64 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=73.0
Q ss_pred EEEeCCC-CCCCccccccCCccccCCCCCCEEecCC-CccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCC
Q 029521 77 KLDLTQT-RKWESAEWYMNASLFTPFQQLESLDLIG-NNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLS 154 (192)
Q Consensus 77 ~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 154 (192)
.++.+++ +++.++ . +..+++|+.|+|++ |.+++..|.. |.++++|++|+|++|+|++..|..|++++
T Consensus 12 ~v~~~~~n~l~~ip------~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLH------H-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTTTT------T-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCccC------C-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4588887 787643 4 78899999999996 9999766666 99999999999999999999999999999
Q ss_pred CCCEEeccCCccccccC
Q 029521 155 SLRHLSLAGNELDGSVD 171 (192)
Q Consensus 155 ~L~~L~L~~N~l~g~ip 171 (192)
+|++|+|++|+|++..|
T Consensus 81 ~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCCEEECCSSCCSCCCS
T ss_pred CCCEEeCCCCccceeCH
Confidence 99999999999995443
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=1.3e-10 Score=92.93 Aligned_cols=91 Identities=23% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
...++.|++++|.++.++ +..|..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..+..+.
T Consensus 99 l~~L~~L~l~~N~l~~l~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLP-----LGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp CTTCCEEECCSSCCCCCC-----SSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred CCCCCEEECCCCcCcccC-----HHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhc
Confidence 357899999999998654 357889999999999999999755544 78899999999999999966666778
Q ss_pred CCCCCCEEeccCCccccccCC
Q 029521 152 GLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip~ 172 (192)
++++|++|+|++|+++ .+|.
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCT
T ss_pred CcCCCCEEECCCCcCC-ccCh
Confidence 8999999999999998 5664
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=4.8e-11 Score=104.06 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=76.5
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.++.++ . +..+++|+.|++++|.++ .+|.. ++.+++|++|++++|++++ +| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCCCc------C-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 4788999999998653 3 788999999999999999 78887 9999999999999999996 77 89999
Q ss_pred CCCCEEeccCCcccccc-CC
Q 029521 154 SSLRHLSLAGNELDGSV-DI 172 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~i-p~ 172 (192)
++|++|+|++|++++.+ |.
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTG
T ss_pred CCCcEEECCCCCCCCCCCcH
Confidence 99999999999999876 64
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.16 E-value=8.3e-11 Score=102.33 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=43.5
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.+..+. +..|.++++|++|++++|.+++..|.. ++++++|++|++++|++++..|..+++
T Consensus 56 ~~L~~L~Ls~n~l~~i~-----~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIE-----DKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp TTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCCCCTTS----STTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred ccCcEEeCCCCcccccC-----HHHhhchhhcCEeECCCCcccccChhh----cCCcccCCEEEccCCccccccccccCC
Confidence 45666666666655332 234455555555555555555444444 455555555555555554433344444
Q ss_pred CCCCCEEeccCCccc
Q 029521 153 LSSLRHLSLAGNELD 167 (192)
Q Consensus 153 l~~L~~L~L~~N~l~ 167 (192)
+++|++|++++|.++
T Consensus 127 l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 127 LITLKKLNVAHNFIH 141 (606)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEeCCCCccc
Confidence 444444444444444
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=4.7e-11 Score=87.58 Aligned_cols=83 Identities=30% Similarity=0.352 Sum_probs=42.1
Q ss_pred cEEEEEeCCCCCC--CccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 74 RVIKLDLTQTRKW--ESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~--~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
+++.|++++|.+. .++ ..+..+++|+.|++++|.+++. .. +..+++|++|++++|++++.+|..+.
T Consensus 25 ~L~~L~l~~n~l~~~~i~------~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIE------GLTAEFVNLEFLSLINVGLISV--SN----LPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCSEEECCSCBCBTTBCS------SCCGGGGGCCEEEEESSCCCCC--SS----CCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred cCCEEECCCCCCChhhHH------HHHHhCCCCCEEeCcCCCCCCh--hh----hccCCCCCEEECcCCcCchHHHHHHh
Confidence 4555555555543 221 2244455555555555555543 22 55555555555555555544555454
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++++|.+++
T Consensus 93 ~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp HCTTCCEEECBSSSCCS
T ss_pred hCCCCCEEeccCCccCc
Confidence 55555555555555543
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=4.6e-11 Score=106.95 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
..++.|+|++|.+..++. .+..++.|+.|+|++|.++ .+|.. ++.+++|++|+|++|+|+ .+|..|+.
T Consensus 224 ~~L~~L~Ls~n~l~~l~~------~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISA------NIFKYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp CCCCEEECTTSCCSCCCG------GGGGCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred CCCcEEECCCCCCCCCCh------hhcCCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 456778888887765543 2346777777777777777 56666 777777777777777777 66777777
Q ss_pred CCCCCEEeccCCccccccCC
Q 029521 153 LSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g~ip~ 172 (192)
+++|++|+|++|.|+ .||.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCS
T ss_pred CCCCCEEECCCCCCC-ccCh
Confidence 777777777777775 5664
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.15 E-value=1.7e-10 Score=93.29 Aligned_cols=98 Identities=26% Similarity=0.359 Sum_probs=69.0
Q ss_pred CccccceeEcC---------CCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCC
Q 029521 60 CCQWERVECNN---------TTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLN 130 (192)
Q Consensus 60 ~c~w~gv~c~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~ 130 (192)
.|+++.+.|.. ....++.|++++|.++.++. ..+..+++|++|++++|.+++..|.. +..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKD-----GDFKNLKNLHTLILINNKISKISPGA----FAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeCh-----hhhccCCCCCEEECCCCcCCeeCHHH----hcCCC
Confidence 37899999863 23468899999999876543 45777888888888888888766666 77777
Q ss_pred CCcEEEccCCcCCccCc----------------------hhccCCCCCCEEeccCCccc
Q 029521 131 NLKFLHLDFNCFNNNIF----------------------SSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 131 ~L~~L~Ls~N~l~g~~p----------------------~~l~~l~~L~~L~L~~N~l~ 167 (192)
+|++|++++|+++ .+| ..+.++++|++|++++|.++
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 7777777777765 333 33555556666666666553
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.15 E-value=1e-10 Score=92.36 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=34.4
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCc-cCchhccCCCCCCEEeccCCcccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNN-NIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..+++|+.|++++|.+.+..+.. +..+++|++|++++|++++ .+|..++.+++|++|++++|++++
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred hcCCccccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 444444555555555444333323 5555555555555555554 235555555555555555555554
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=2e-11 Score=109.32 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=79.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|+|++|.++.++ ..+..+++|+.|+|++|.++ .+|.. ++.+++|++|+|++|+++ .+|..|+
T Consensus 246 l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELP------AEIKNLSNLRVLDLSHNRLT-SLPAE----LGSCFQLKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp CCSCSCCBCTTSCCSCCC------GGGGGGTTCCEEECTTSCCS-SCCSS----GGGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred CCCCCEEEeeCCcCcccC------hhhhCCCCCCEEeCcCCcCC-ccChh----hcCCCCCCEEECCCCCCC-ccChhhh
Confidence 357899999999998654 46889999999999999999 78988 999999999999999997 7898899
Q ss_pred CCCCCCEEeccCCccccccCC
Q 029521 152 GLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip~ 172 (192)
.+++|++|+|++|.|+|.+|.
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHH
T ss_pred cCCCccEEeCCCCccCCCChH
Confidence 999999999999999987763
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=1.1e-10 Score=101.08 Aligned_cols=84 Identities=27% Similarity=0.277 Sum_probs=49.9
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.+..+.. ..|..+++|++|++++|.+++..|.. |.++++|++|++++|+++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-----PDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-----GGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccccCh-----hhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 456777777776654432 34566666666666666666554554 666666666666666665 34443 5
Q ss_pred CCCCCEEeccCCcccc
Q 029521 153 LSSLRHLSLAGNELDG 168 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g 168 (192)
+++|++|++++|++++
T Consensus 120 l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 120 MASLRHLDLSFNDFDV 135 (562)
T ss_dssp CTTCSEEECCSSCCSB
T ss_pred cccCCEEECCCCCccc
Confidence 5566666666665553
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=97.06 Aligned_cols=69 Identities=26% Similarity=0.302 Sum_probs=51.9
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSV 170 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~i 170 (192)
+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..|.++++|++|+|++|++++..
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 456667777777777777665665 777888888888888888777777888888888888888887443
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.13 E-value=1e-10 Score=103.22 Aligned_cols=73 Identities=22% Similarity=0.183 Sum_probs=49.0
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
..+.++++|++|++++|.+++..+.. |+++++|++|++++|++++..|..|+++++|++|++++|.+++..|.
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred HHHhcccCcCEEECCCCccCccChhh----hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 34555666666666666666422223 67777777777777777766666777777777777777777766553
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=7.3e-11 Score=103.13 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=53.0
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
..|..+++|+.|++++|.+++..|.. ++.+++|++|++++|++++..+..|+++++|++|+|++|.+++..|.
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 45677777777777777777655555 67778888888888887755555567778888888888887766553
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.9e-10 Score=100.51 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=41.5
Q ss_pred EEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCC
Q 029521 75 VIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLS 154 (192)
Q Consensus 75 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~ 154 (192)
++.++++++.+..++ +..+..+++|+.|++++|.+++..|.. ++.+++|++|++++|.+++..|..|++++
T Consensus 53 l~~l~l~~~~l~~lp-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 53 QKIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp CSEEEESSCEESEEC-----THHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ceEEEeeCCCCCCcC-----HHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 344555555443322 133444555555555555555433333 55555555555555555544444455555
Q ss_pred CCCEEeccCCccc
Q 029521 155 SLRHLSLAGNELD 167 (192)
Q Consensus 155 ~L~~L~L~~N~l~ 167 (192)
+|++|+|++|.++
T Consensus 124 ~L~~L~L~~n~l~ 136 (597)
T 3oja_B 124 LLTVLVLERNDLS 136 (597)
T ss_dssp TCCEEECCSSCCC
T ss_pred CCCEEEeeCCCCC
Confidence 5555555555554
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=6.8e-11 Score=97.83 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=47.2
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
..+..+++|++|++++|.+++..|.. ++.+++|++|++++|+++...+..++++++|++|++++|.+++..|
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 35666677777777777776655554 6677777777777777764333445677777777777777765444
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.12 E-value=2.1e-10 Score=96.79 Aligned_cols=68 Identities=29% Similarity=0.350 Sum_probs=49.2
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..|..|.++++|++|+|++|++++.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 455666777777777777655655 77777777777777777777777777777778888877777743
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=2.5e-10 Score=94.35 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.++++++.++.++. ..+..+++|+.|++++|.+++..+.. +..+++|++|++++|++++..|..++++
T Consensus 46 ~l~~l~l~~~~l~~l~~-----~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPA-----ALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEESCEESEECT-----HHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecCCchhhCCh-----hHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 34445555544433221 23344455555555555544333333 4445555555555555544444444555
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|++++|.++
T Consensus 117 ~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 117 PLLTVLVLERNDLS 130 (390)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCccC
Confidence 55555555555544
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=1.6e-10 Score=87.08 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=74.6
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
...++.|++++|.++... +..+..+++|+.|++++|.+++..|.. +..+++|++|++++|++.+.+| .+.
T Consensus 87 l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~-~l~ 156 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDK-----IPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM-PLK 156 (197)
T ss_dssp CTTCCEEEEECTTCBGGG-----SCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG-GGG
T ss_pred CCCCCEEEeECCccCccc-----ChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH-hhc
Confidence 467999999999987422 246888999999999999999877777 9999999999999998334666 699
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++++|++++
T Consensus 157 ~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp GCSSCCEEECTTBCCCC
T ss_pred CCCCCCEEECCCCCCcC
Confidence 99999999999999985
No 81
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.09 E-value=2.8e-10 Score=96.43 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..++++|+|++|.+..+. +..|.++++|+.|++++|.+++..+.. +.++++|++|++++|++++..|..|.
T Consensus 55 l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNENIVSAVE-----PGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp CTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCEEECCCCccCEeC-----hhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHcc
Confidence 346788888888776443 345667777777777777776433333 66677777777777777766666677
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
++++|++|++++|.+++..|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp TCTTCCEEEECCTTCCEECT
T ss_pred ccccCCEEECCCCccceeCh
Confidence 77777777777777765544
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.5e-10 Score=85.69 Aligned_cols=87 Identities=22% Similarity=0.170 Sum_probs=68.6
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccC-CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTP-FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~-l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
...++.|++++|.++.++. +.. .++|+.|++++|.+++. .. +..+++|++|++++|++++..|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCceEEEeeCCCCchhHH-------hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchh
Confidence 3568999999998876532 333 44899999999999864 34 8899999999999999986555556
Q ss_pred cCCCCCCEEeccCCccccccCC
Q 029521 151 GGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+.+++|++|++++|.++ .+|.
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~ 105 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGD 105 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGG
T ss_pred hcCCCCCEEECCCCcCC-cchh
Confidence 88999999999999985 4553
No 83
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=3.3e-10 Score=98.55 Aligned_cols=93 Identities=23% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.+..+. +..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++..|..++
T Consensus 56 l~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIH-----EDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp CTTCSEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred CccceEEECCCCccceeC-----hhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc
Confidence 357889999999886543 357888899999999999888777777 88888899999988888876677788
Q ss_pred CCCCCCEEeccCCcccc-ccCCC
Q 029521 152 GLSSLRHLSLAGNELDG-SVDIK 173 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g-~ip~~ 173 (192)
++++|++|++++|.+++ .+|..
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~ 149 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKG 149 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTT
T ss_pred cCCcccEEECCCCcccccCcccc
Confidence 88888888888888886 34543
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=99.35 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=44.6
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.+..+.. ..|..+++|++|++++|.+++..|.. +.++++|++|++++|+++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-----SDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-----HHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCCcccccCh-----hhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence 345666666665553321 33555555555555555555544444 555555555555555555 34433 4
Q ss_pred CCCCCEEeccCCcccc
Q 029521 153 LSSLRHLSLAGNELDG 168 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g 168 (192)
+++|++|++++|.+++
T Consensus 89 l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCCCSEEECCSSCCSS
T ss_pred cCCccEEeccCCcccc
Confidence 5555555555555543
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.07 E-value=3.6e-10 Score=97.35 Aligned_cols=72 Identities=29% Similarity=0.452 Sum_probs=44.1
Q ss_pred ccccCCCCCCEEecCCCccc-cccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 96 SLFTPFQQLESLDLIGNNIA-GCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
..+..+++|+.|++++|.+. +.+|.. +..+++|++|++++|++++..|..++.+++|++|++++|++++..|
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhhhcCCcCcEEECcCCcCccccchhh----hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 34555666666666666665 445555 6666666666666666666556666666666666666666665444
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.06 E-value=4.5e-10 Score=96.71 Aligned_cols=86 Identities=26% Similarity=0.263 Sum_probs=44.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
..++.|++++|.++.++. ..|..+++|+.|++++|.+++..|.. |.++++|++|++++|++++..|..|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEECT-----TTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCCccCccCh-----hHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 356666666666654332 34455555555555555555433333 555555555555555555444444555
Q ss_pred CCCCCEEeccCCccc
Q 029521 153 LSSLRHLSLAGNELD 167 (192)
Q Consensus 153 l~~L~~L~L~~N~l~ 167 (192)
+++|++|++++|.++
T Consensus 99 l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 99 LSSLQKLVAVETNLA 113 (570)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred ccccccccccccccc
Confidence 555555555555544
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.06 E-value=3.7e-10 Score=99.52 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=68.0
Q ss_pred cEEEEEeCCCCCCCccccccCCcccc--CCCCCCEEecCCCccccccCcccccccCCCCCCcEEEc------cCCcCCcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFT--PFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHL------DFNCFNNN 145 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~--~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L------s~N~l~g~ 145 (192)
.++.|++++|.++.++ ..+. .+++|+.|++++|.+++ +|.. +..+++|++|++ ++|++.+.
T Consensus 489 ~L~~L~Ls~N~l~~lp------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~----~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLS------DDFRATTLPYLVGIDLSYNSFSK-FPTQ----PLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp GCCEEECCSSCCCBCC------GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred CccEEECcCCcCCccC------hhhhhccCCCcCEEECCCCCCCC-cChh----hhcCCCCCEEECCCCcccccCccccc
Confidence 5666666666665433 2343 78888888888888887 7777 788888888888 56778888
Q ss_pred CchhccCCCCCCEEeccCCccccccCCC
Q 029521 146 IFSSLGGLSSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 173 (192)
+|..++.+++|++|+|++|++ +.||..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 888888888888888888888 688864
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=6.3e-11 Score=95.48 Aligned_cols=87 Identities=21% Similarity=0.143 Sum_probs=50.2
Q ss_pred CcEEEEEeCCCCCCCccccccCCccc--cCCCCCCEEecCCCccccccCcccccccCCC-----CCCcEEEccCCcCCcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLF--TPFQQLESLDLIGNNIAGCVENEGLERLSRL-----NNLKFLHLDFNCFNNN 145 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~--~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~g~ 145 (192)
.++++|++++|.+.... +..+ ..+++|+.|++++|.+++. |.. ++.+ ++|++|++++|++++.
T Consensus 95 ~~L~~L~L~~n~l~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTA-----PPPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp SCCCEEEEEEEBCBSCC-----CCCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred CCccEEEccCCcccchh-----HHHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccc
Confidence 34666666666654211 1122 5566666666666666654 443 4443 5666666666666655
Q ss_pred CchhccCCCCCCEEeccCCccccc
Q 029521 146 IFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
.|..++++++|++|++++|++.|.
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hHHHhccCCCCCEEECCCCCcCcc
Confidence 556666666666666666665544
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.03 E-value=3.8e-10 Score=96.95 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCc-cCchhc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNN-NIFSSL 150 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~l 150 (192)
..++++|++++|.+..+. +..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++ ..|..+
T Consensus 49 l~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCCcCccC-----hhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhh
Confidence 356788888888776433 345677777777777777777655554 6777777777777777765 345566
Q ss_pred cCCCCCCEEeccCCccccccC
Q 029521 151 GGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip 171 (192)
+++++|++|++++|.+.+.+|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC
T ss_pred hccCCccEEECCCCccccccC
Confidence 777777777777776555555
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.02 E-value=2.8e-10 Score=91.46 Aligned_cols=90 Identities=19% Similarity=0.041 Sum_probs=70.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccc--cCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLF--TPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~--~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
++++|++++|.+..... ..+ ..+++|+.|++++|.+++..+......+..+++|++|++++|++++..|..++
T Consensus 92 ~L~~L~l~~n~l~~~~~-----~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTMP-----PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCCC-----CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccchh-----hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 48889999888764332 334 78899999999999998765522111256788999999999999888888899
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|+|++|++.+
T Consensus 167 ~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCTTCCEEECCSCTTCH
T ss_pred cCCCCCEEECCCCCCcc
Confidence 99999999999998765
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.02 E-value=4.6e-10 Score=96.02 Aligned_cols=65 Identities=23% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 100 PFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
.++.|+.|++++|.+++. |. ...+++|++|++++|++++..| .+..+++|++|+|++|.+++ +|.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred hCCcccEEecCCCccccc-cc-----cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch
Confidence 455555555555555543 22 3457777777777777775433 47777888888888888875 453
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.01 E-value=7.4e-10 Score=89.57 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=67.4
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.+++|++++|.+..+. +..+..+++|+.|++++|.+++..+.. +..+++|++|++++|+++ .+|..+..+
T Consensus 193 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 193 SLTELHLDGNKITKVD-----AASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp TCSEEECTTSCCCEEC-----TGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred cCCEEECCCCcCCccC-----HHHhcCCCCCCEEECCCCcCceeChhh----ccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 4556666666554332 356778889999999999988766655 888889999999999998 788888889
Q ss_pred CCCCEEeccCCccccc
Q 029521 154 SSLRHLSLAGNELDGS 169 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ 169 (192)
++|++|++++|++++.
T Consensus 263 ~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 263 KYIQVVYLHNNNISAI 278 (330)
T ss_dssp SSCCEEECCSSCCCCC
T ss_pred CCcCEEECCCCcCCcc
Confidence 9999999999998843
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.00 E-value=8.9e-10 Score=97.15 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=62.3
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..++ +..|..+++|++|++++|.+++..|.. ++++++|++|++++|++++..|..++++
T Consensus 74 ~L~~L~L~~n~l~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLS-----DKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred CcCEEECCCCccCccC-----hhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence 4566666666665433 245777778888888888777654455 7777778888888877777777777777
Q ss_pred CCCCEEeccCCccccccC
Q 029521 154 SSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip 171 (192)
++|++|++++|.+++..|
T Consensus 145 ~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKS 162 (680)
T ss_dssp TTCCEEECCSSCCCCBCH
T ss_pred ccCCEEEccCCcccccCH
Confidence 777777777777765443
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=9.5e-10 Score=100.25 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=67.6
Q ss_pred cEEEEEeCCCCCCCccccccCCcccc--CCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccC------CcCCcc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFT--PFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF------NCFNNN 145 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~--~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~------N~l~g~ 145 (192)
.++.|+|++|.+..++ ..+. .+++|+.|++++|.+++ +|.. +..+++|+.|++++ |++.+.
T Consensus 729 ~L~~L~Ls~N~L~~lp------~~l~~~~l~~L~~L~Ls~N~L~~-lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLS------DDFRATTLPYLSNMDVSYNCFSS-FPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp GCCEEECCSSCCCCCC------GGGSTTTCTTCCEEECCSSCCSS-CCCG----GGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CccEEECCCCCCccch------HHhhhccCCCcCEEEeCCCCCCc-cchh----hhcCCCCCEEECCCCCCccccccccc
Confidence 5666666666665433 2344 78888888888888887 7776 77888888888865 777888
Q ss_pred CchhccCCCCCCEEeccCCccccccCCC
Q 029521 146 IFSSLGGLSSLRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 146 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 173 (192)
+|..++++++|+.|+|++|++ +.||..
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 888888888888888888888 788865
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.99 E-value=7.7e-10 Score=94.58 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=74.5
Q ss_pred EEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCC
Q 029521 76 IKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSS 155 (192)
Q Consensus 76 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~ 155 (192)
+.+++++|+++.++. .+. ++++.|++++|.+++..|.. +..+++|++|++++|++++..|..|+++++
T Consensus 3 ~~l~ls~n~l~~ip~------~~~--~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 70 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK------DLS--QKTTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQE 70 (520)
T ss_dssp CEEECTTSCCSSCCC------SCC--TTCSEEECCSSCCCCCCHHH----HTTCTTCCEEECCSSCCCEEEGGGGTTCTT
T ss_pred ceEecCCCCcccccc------ccc--ccccEEECCCCcccccChhh----ccccccccEEecCCCccCCcChHHhhcccC
Confidence 468999999987653 233 89999999999999866666 999999999999999999988999999999
Q ss_pred CCEEeccCCccccccCCC
Q 029521 156 LRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 156 L~~L~L~~N~l~g~ip~~ 173 (192)
|++|+|++|+++ .+|..
T Consensus 71 L~~L~Ls~N~l~-~lp~~ 87 (520)
T 2z7x_B 71 LEYLDLSHNKLV-KISCH 87 (520)
T ss_dssp CCEEECCSSCCC-EEECC
T ss_pred CCEEecCCCcee-ecCcc
Confidence 999999999998 67754
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.98 E-value=6e-10 Score=90.24 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=70.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.+++|++++|.+..+. +..+..+++|+.|++++|.+++..+.. +..+++|++|++++|+++ .+|..+..+
T Consensus 194 ~L~~L~l~~n~i~~~~-----~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIE-----LEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SCSCCBCCSSCCCCCC-----TTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCEEECCCCcCCccC-----HHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 4566666666665433 356788999999999999998866666 888999999999999998 788889999
Q ss_pred CCCCEEeccCCccccc
Q 029521 154 SSLRHLSLAGNELDGS 169 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ 169 (192)
++|++|++++|++++.
T Consensus 264 ~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTCCEEECCSSCCCBC
T ss_pred ccCCEEECCCCCCCcc
Confidence 9999999999999844
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.97 E-value=7e-10 Score=89.31 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=58.3
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCcccccc--CcccccccCCCCCCcEEEccCCcCCc--cCc-
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCV--ENEGLERLSRLNNLKFLHLDFNCFNN--NIF- 147 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~--p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p- 147 (192)
..+++|++++|.+..+. +..+..+++|+.|++++|.+.+.+ |.. ..+..+++|++|++++|++++ .++
T Consensus 149 ~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFS-----CEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCCCC-----TTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCcEEEeeCCCCccch-----HHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCcCcchHHHHH
Confidence 45667777777665433 356777888888888888876642 222 002667777777777777763 222
Q ss_pred hhccCCCCCCEEeccCCccccccC
Q 029521 148 SSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 148 ~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
..+..+++|++|++++|++++.+|
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhcCCCCCEEECCCCcCCcccc
Confidence 334566777777777777776554
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=1.3e-09 Score=88.42 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=63.7
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..+ ..+..+++|+.|++++|.+++. + . +..+++|++|++++|++++..|..++.+
T Consensus 244 ~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI-------NAVKDLTKLKMLNVGSNQISDI-S-V----LNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp TCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCCC-G-G----GGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCEEECCCCccCCC-------hhHhcCCCcCEEEccCCccCCC-h-h----hcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 344445554444432 2366778888888888888753 3 2 7788899999999999988888889999
Q ss_pred CCCCEEeccCCccccccC
Q 029521 154 SSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ip 171 (192)
++|++|++++|++++..|
T Consensus 311 ~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCSEEECCSSSCCCCGG
T ss_pred ccCCEEEccCCccccccC
Confidence 999999999999987666
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.96 E-value=1.3e-09 Score=98.95 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=58.8
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchh--c
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSS--L 150 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~--l 150 (192)
.+++.|++++|... .. +.+..|.++++|+.|++++|.+.+..|.. +.++++|++|++++|++++.+|.. +
T Consensus 48 ~~L~~LdLs~n~~~--~~--i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 48 EQLQLLELGSQYTP--LT--IDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSCSEEEECTTCCC--CE--ECTTTTSSCTTCCEEECTTCCCCEECTTS----SCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccCeEEeCCCCCCc--cc--cCHHHhcCCCCCCEEECCCCcCcccCHhH----ccCCcccCEeeCcCCCCCcccccCccc
Confidence 46777777777432 11 22355667777777777777777666666 777777777777777776655544 6
Q ss_pred cCCCCCCEEeccCCccccccC
Q 029521 151 GGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 151 ~~l~~L~~L~L~~N~l~g~ip 171 (192)
+++++|++|+|++|.+++..|
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCC
T ss_pred cccCCCCEEECCCCccccccc
Confidence 677777777777777665443
No 100
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=88.69 Aligned_cols=84 Identities=24% Similarity=0.203 Sum_probs=49.6
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCc-hhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIF-SSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~l~ 151 (192)
.+++.|++++|.++.+. +..|..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+ ..+.
T Consensus 76 ~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 76 VNLQALVLTSNGINTIE-----EDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred CCCCEEECCCCccCccC-----HhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcccCchhhhc
Confidence 46777888877776433 234666666666666666666432222 5566666666666666653222 2455
Q ss_pred CCCCCCEEeccCCc
Q 029521 152 GLSSLRHLSLAGNE 165 (192)
Q Consensus 152 ~l~~L~~L~L~~N~ 165 (192)
++++|++|++++|+
T Consensus 147 ~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 147 HLTKLQILRVGNMD 160 (353)
T ss_dssp TCTTCCEEEEEESS
T ss_pred cCCCCcEEECCCCc
Confidence 66666666666653
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=7.4e-10 Score=85.63 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=45.0
Q ss_pred CcEEEEEeCCCC-CCCccccccCCccccCCCCCCEEecCC-CccccccCcccccccCCCCCCcEEEccCCcCCccCchhc
Q 029521 73 GRVIKLDLTQTR-KWESAEWYMNASLFTPFQQLESLDLIG-NNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSL 150 (192)
Q Consensus 73 ~~v~~L~L~~~~-l~~l~~~~l~~~~~~~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l 150 (192)
.+++.|++++|. ++.++. ..|..+++|+.|++++ |.+++..+.. |..+++|++|++++|++++ +|. +
T Consensus 55 ~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~ 123 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-L 123 (239)
T ss_dssp TTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-C
T ss_pred CCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-c
Confidence 456777777775 654332 3455666666666665 6665433333 5555555555555555553 343 4
Q ss_pred cCCCCCC---EEeccCC-ccc
Q 029521 151 GGLSSLR---HLSLAGN-ELD 167 (192)
Q Consensus 151 ~~l~~L~---~L~L~~N-~l~ 167 (192)
+.+++|+ +|++++| .++
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCC
T ss_pred ccccccccccEEECCCCcchh
Confidence 4444444 4555544 443
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=2.9e-09 Score=92.17 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=74.9
Q ss_pred EEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCC
Q 029521 76 IKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSS 155 (192)
Q Consensus 76 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~ 155 (192)
+.+++++++++.++. .+ .+.++.|++++|.+++..|.. +.++++|++|++++|++++..|..|+++++
T Consensus 34 ~~l~ls~~~L~~ip~------~~--~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK------DL--PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCT------TS--CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCC------CC--CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 789999999987654 22 278999999999999866666 999999999999999999988999999999
Q ss_pred CCEEeccCCccccccCCC
Q 029521 156 LRHLSLAGNELDGSVDIK 173 (192)
Q Consensus 156 L~~L~L~~N~l~g~ip~~ 173 (192)
|++|+|++|+++ .+|..
T Consensus 102 L~~L~Ls~N~l~-~lp~~ 118 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC 118 (562)
T ss_dssp CCEEECTTSCCC-EECSC
T ss_pred CCEEECCCCcCC-ccCcc
Confidence 999999999998 67864
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=3.1e-09 Score=84.88 Aligned_cols=61 Identities=38% Similarity=0.463 Sum_probs=30.8
Q ss_pred cCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
..+++|+.|++++|.+++. .. +..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~--~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEEccCCcCCcc--hh----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 3444455555555544432 12 4555555555555555554333 555555555555555554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.91 E-value=3.6e-09 Score=84.55 Aligned_cols=66 Identities=30% Similarity=0.397 Sum_probs=46.5
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
+..+++|+.|++++|.+++ ++ . +..+++|++|++++|++++. ..++.+++|++|++++|++++..|
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 5566777777777777765 22 2 66777778888888877754 457777888888888888776544
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.89 E-value=1.8e-09 Score=87.57 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.+..++ .+..+++|+.|++++|.+++..|.. +..+++|++|++++|++++..| +.
T Consensus 264 l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CCCcCEEEccCCccCCCh-------hhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCccccccC--hh
Confidence 467999999999988653 3778999999999999999877777 8999999999999999997666 88
Q ss_pred CCCCCCEEeccCCccc
Q 029521 152 GLSSLRHLSLAGNELD 167 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~ 167 (192)
.+++|++|++++|.++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 9999999999999986
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=5.9e-09 Score=91.58 Aligned_cols=63 Identities=37% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..+++|+.|+|++|.+++. .. +..+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 34445555555555555432 22 4555555555555555554433 5555555555555555543
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.87 E-value=8.4e-10 Score=88.70 Aligned_cols=63 Identities=30% Similarity=0.370 Sum_probs=39.3
Q ss_pred cCCCCCCEEecCCCccccccCcccccccCCC---CCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 99 TPFQQLESLDLIGNNIAGCVENEGLERLSRL---NNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l---~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
..+++|+.|++++|.+++..|.. +..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPS----APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSC----CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhh----HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 34566666666666666655554 4444 46777777777766 5555553 567777777777664
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.86 E-value=7.6e-09 Score=83.23 Aligned_cols=79 Identities=29% Similarity=0.449 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
+++.|++++|.+..++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|++++..+ ++.+
T Consensus 86 ~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~l 150 (308)
T 1h6u_A 86 KITELELSGNPLKNVS-------AIAGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITNISP--LAGL 150 (308)
T ss_dssp SCCEEECCSCCCSCCG-------GGTTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCCEEEccCCcCCCch-------hhcCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCcCcc--ccCC
Confidence 4455555555444321 23444555555555555543 221 4444444444444444443222 4444
Q ss_pred CCCCEEeccCCccc
Q 029521 154 SSLRHLSLAGNELD 167 (192)
Q Consensus 154 ~~L~~L~L~~N~l~ 167 (192)
++|++|++++|.++
T Consensus 151 ~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 151 TNLQYLSIGNAQVS 164 (308)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCccEEEccCCcCC
Confidence 44444444444444
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=8.2e-09 Score=88.23 Aligned_cols=99 Identities=20% Similarity=0.153 Sum_probs=71.6
Q ss_pred ccccceeEcCCCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccC-CCCCCcEEEccC
Q 029521 61 CQWERVECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLS-RLNNLKFLHLDF 139 (192)
Q Consensus 61 c~w~gv~c~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~Ls~ 139 (192)
|...++.|.. ...++.|++++|.++.+.. ..+..++.|+.|++++|.+++..|.. +. .+++|++|++++
T Consensus 109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 109 NNISRVSCSR-GQGKKNIYLANNKITMLRD-----LDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQY 178 (487)
T ss_dssp SCCCCEEECC-CSSCEEEECCSSCCCSGGG-----BCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTT
T ss_pred CcCCCCCccc-cCCCCEEECCCCCCCCCCc-----hhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCC
Confidence 3445555554 4568888888888875433 45677888888888888888777665 54 678888888888
Q ss_pred CcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 140 NCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 140 N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
|.+++. |. +..+++|++|+|++|.+++..|
T Consensus 179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 179 NFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp SCCCEE-EC-CCCCTTCCEEECCSSCCCEECG
T ss_pred Cccccc-cc-cccCCCCCEEECCCCCCCCCCH
Confidence 888865 32 4457888888888888886544
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.86 E-value=1.1e-08 Score=80.48 Aligned_cols=42 Identities=38% Similarity=0.492 Sum_probs=25.0
Q ss_pred cCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 126 LSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+..+++|++|++++|++++. | .++.+++|++|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 55666666666666666542 3 455666666666666666544
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=2.5e-09 Score=93.37 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=26.8
Q ss_pred cccce-eEcCCCCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccc
Q 029521 62 QWERV-ECNNTTGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIA 115 (192)
Q Consensus 62 ~w~gv-~c~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~ 115 (192)
.|.++ .|. ..+++.|++++|.++.++. . + +++|+.|++++|.++
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~L~~lp~-----~-l--~~~L~~L~Ls~N~l~ 93 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLNLSSLPD-----N-L--PPQITVLEITQNALI 93 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSCCSCCCS-----C-C--CTTCSEEECCSSCCS
T ss_pred hhhhccccc--cCCccEEEeCCCCCCccCH-----h-H--cCCCCEEECcCCCCc
Confidence 68888 676 3468888888887765443 1 1 144555555555554
No 112
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.85 E-value=5.1e-09 Score=84.39 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 100 PFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
.+++|+.|++++|.+++. |. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|.
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred ccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence 456666666666666643 32 3457888888888888885 4445888888888888888888 4554
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.85 E-value=6.7e-09 Score=83.53 Aligned_cols=89 Identities=25% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcc----------------cccccCCCCCCcEE
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENE----------------GLERLSRLNNLKFL 135 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~----------------~~~~~~~l~~L~~L 135 (192)
..+++.|++++|.+..++. +..+++|+.|++++|.+++..+-. ....+..+++|++|
T Consensus 106 l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 178 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-------LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCchh-------hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEE
Confidence 3467888888887765432 444555555555555554321100 00004445555555
Q ss_pred EccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 136 HLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 136 ~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
++++|++++..+ +..+++|++|++++|++++.
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 555555543222 45555555555555555543
No 114
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.84 E-value=1.3e-08 Score=81.94 Aligned_cols=61 Identities=28% Similarity=0.374 Sum_probs=33.0
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+++|+.|++++|.+++ +|+. +..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~----~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPE----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGG----GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCc-chhh----hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 4555555555555553 3333 455555555555555555 34545555555555555555555
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=5.8e-09 Score=82.16 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=57.5
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccc
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
.+..+++|+.|++++|.+++ +| . +..+++|++|++++|++++. ..+..+++|++|++++|.+++.
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~-~~-~----l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS-IV-M----LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB-CG-G----GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hhcCcccccEEECCCCcCCC-Ch-H----HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 37788999999999999986 44 3 88999999999999999976 6799999999999999999865
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.82 E-value=9.7e-09 Score=90.19 Aligned_cols=67 Identities=30% Similarity=0.380 Sum_probs=50.9
Q ss_pred cccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 97 LFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 97 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
.+..+++|+.|+|++|.+.+ ++ . +..+++|+.|++++|++++. ..+..+++|+.|+|++|.+++..|
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred hhccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 36667777888888887775 33 2 77788888888888888764 568888888888888888887655
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.79 E-value=1.2e-08 Score=86.32 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=21.6
Q ss_pred cCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 126 LSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 126 ~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..+++|++|++++|++++..| +..+++|++|++++|.+++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 4455555555555555554444 4555555555555555554
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=1.9e-08 Score=85.34 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=56.9
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGG 152 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~ 152 (192)
.+++.|++++|.++.+ .+..+++|++|++++|.+++. | ++.+++|++|++++|++++ +| ++.
T Consensus 64 ~~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp TTCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred CCCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 4567777777766543 156677788888888887763 2 6778888888888888876 44 777
Q ss_pred CCCCCEEeccCCcccc
Q 029521 153 LSSLRHLSLAGNELDG 168 (192)
Q Consensus 153 l~~L~~L~L~~N~l~g 168 (192)
+++|++|++++|++++
T Consensus 126 l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCCEEECTTSCCSC
T ss_pred CCcCCEEECCCCccce
Confidence 8888888888888876
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.71 E-value=1.5e-08 Score=85.73 Aligned_cols=85 Identities=24% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
...++.|++++|.+..+.. +..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+.
T Consensus 286 l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP-------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG-------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred CCccCeEEcCCCcccCchh-------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhc
Confidence 4578999999999876532 6789999999999999997654 67899999999999999975 4689
Q ss_pred CCCCCCEEeccCCccccccC
Q 029521 152 GLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip 171 (192)
.+++|++|++++|++++.+|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG
T ss_pred cCCCCCEEeCCCCccCccch
Confidence 99999999999999998887
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.65 E-value=8.6e-08 Score=81.24 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=36.8
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
+..+++|++|++++|.+++ +|.. + ++|++|++++|++++ +| .++++++|++|++++|++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~----~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL----P---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC----C---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC----c---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 5566666666666666664 4432 2 356666666666654 44 46666666666666666664
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.65 E-value=1.4e-08 Score=81.92 Aligned_cols=61 Identities=25% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCCCCEEecCCCccccc-cCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 100 PFQQLESLDLIGNNIAGC-VENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
.+++|+.|++++|.+++. +|.. +..+++|++|++++|++++..|..++.+++|++|++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 455555555555555543 4444 555555555555555555555555555555555555555
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.62 E-value=5.2e-09 Score=86.38 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=33.3
Q ss_pred ccCCCCCCEEecCCCccc----cccCcccccccCCCCCCcEEEccCCcCCcc----Cchhc--cCCCCCCEEeccCCccc
Q 029521 98 FTPFQQLESLDLIGNNIA----GCVENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSL--GGLSSLRHLSLAGNELD 167 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~----g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l--~~l~~L~~L~L~~N~l~ 167 (192)
+..+++|+.|++++|.++ +.+|.. +..+++|++|++++|++++. +|..+ +.+++|++|+|++|.++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 444555555555555553 334443 44555555555555555443 33333 22555555555555554
Q ss_pred c
Q 029521 168 G 168 (192)
Q Consensus 168 g 168 (192)
+
T Consensus 288 ~ 288 (386)
T 2ca6_A 288 L 288 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=2.3e-10 Score=86.31 Aligned_cols=66 Identities=32% Similarity=0.310 Sum_probs=39.4
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCc-hhccCCCCCCEEeccCCccccccCC
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIF-SSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+++|+.|++++|.+++ +| . +..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~----~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-G----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-H----HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCCEEECcCCcCCc-CC-c----cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 3445555555555543 22 2 5556666777777777664222 3567777777777777777766554
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.61 E-value=4.3e-08 Score=83.10 Aligned_cols=62 Identities=31% Similarity=0.402 Sum_probs=23.2
Q ss_pred CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCc--cCchhccCC-------------CCCCEEeccCCcc
Q 029521 102 QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNN--NIFSSLGGL-------------SSLRHLSLAGNEL 166 (192)
Q Consensus 102 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g--~~p~~l~~l-------------~~L~~L~L~~N~l 166 (192)
++|+.|++++|.+++ +|. .+++|++|++++|++++ .+|..++.+ ++|++|++++|++
T Consensus 337 ~~L~~L~L~~N~l~~-lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 337 PRLERLIASFNHLAE-VPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CcCCEEECCCCcccc-ccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 444555555554442 332 24556666666666666 555555555 5566666666666
Q ss_pred cc--ccC
Q 029521 167 DG--SVD 171 (192)
Q Consensus 167 ~g--~ip 171 (192)
+| .+|
T Consensus 409 ~~~~~iP 415 (454)
T 1jl5_A 409 REFPDIP 415 (454)
T ss_dssp -------
T ss_pred Cccccch
Confidence 65 444
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.60 E-value=1.6e-07 Score=79.57 Aligned_cols=78 Identities=23% Similarity=0.196 Sum_probs=49.1
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCC
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGL 153 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l 153 (192)
.++.|++++|.++.+ .+..++.|+.|++++|.+++. . ++.+++|++|++++|++++ +| ++.+
T Consensus 171 ~L~~L~ls~n~l~~l--------~l~~l~~L~~L~l~~N~l~~~---~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l 232 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL--------DVSQNKLLNRLNCDTNNITKL---D----LNQNIQLTFLDCSSNKLTE-ID--VTPL 232 (457)
T ss_dssp TCCEEECCSSCCCCC--------CCTTCTTCCEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSC-CC--CTTC
T ss_pred cCCEEECCCCcccee--------ccccCCCCCEEECcCCcCCee---c----cccCCCCCEEECcCCcccc-cC--cccc
Confidence 345555555554432 144566666666666666653 2 6667777777777777775 45 6677
Q ss_pred CCCCEEeccCCccccc
Q 029521 154 SSLRHLSLAGNELDGS 169 (192)
Q Consensus 154 ~~L~~L~L~~N~l~g~ 169 (192)
++|++|++++|+++|.
T Consensus 233 ~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TTCSEEECCSSCCSCC
T ss_pred CCCCEEEeeCCcCCCc
Confidence 7777777777777754
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.60 E-value=7.3e-08 Score=84.87 Aligned_cols=63 Identities=25% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
+++|+.|++++|.++. +|. .+++|++|++++|+++ .+|..+.++++|+.|+|++|.++|.+|.
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCcCcEEECCCCCCCc-CCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3456666666666552 442 3567888899999888 7788888999999999999998876653
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.59 E-value=1.1e-08 Score=84.40 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=71.7
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccc----cCccccccc--CCCCCCcEEEccCCcCCc--
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC----VENEGLERL--SRLNNLKFLHLDFNCFNN-- 144 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----~p~~~~~~~--~~l~~L~~L~Ls~N~l~g-- 144 (192)
.+++.|+|++|.++..+...+ +..+..+++|+.|++++|.+++. +|.. + +.+++|++|++++|++++
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~----l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSAL-AIALKSWPNLRELGLNDCLLSARGAAAVVDA----FSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHH-HHHGGGCTTCCEEECTTCCCCHHHHHHHHHH----HHTCSSCCCCEEECCSSCCBHHH
T ss_pred CCccEEECcCCCCCcHHHHHH-HHHHccCCCcCEEECCCCCCchhhHHHHHHH----HhhccCCCeEEEECcCCcCCHHH
Confidence 457777777777632111001 23467899999999999999875 4444 5 458999999999999998
Q ss_pred --cCchhc-cCCCCCCEEeccCCccccccC
Q 029521 145 --NIFSSL-GGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 145 --~~p~~l-~~l~~L~~L~L~~N~l~g~ip 171 (192)
.+|..+ .++++|++|++++|.+++..|
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 588877 678999999999999987654
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.58 E-value=8.5e-09 Score=83.15 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=60.0
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCC-cCCcc-Cchhc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFN-CFNNN-IFSSL 150 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N-~l~g~-~p~~l 150 (192)
.++++|++++|.+...+. +..+..+++|+.|++++|.+++..|.. +..+++|++|++++| .+++. ++..+
T Consensus 93 ~~L~~L~L~~~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp BCCCEEECTTCEECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHH----HHHHhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 456777777776542111 234566778888888888777666666 777778888888877 56653 56667
Q ss_pred cCCCCCCEEeccCC-cccc
Q 029521 151 GGLSSLRHLSLAGN-ELDG 168 (192)
Q Consensus 151 ~~l~~L~~L~L~~N-~l~g 168 (192)
.++++|++|++++| .+++
T Consensus 165 ~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHCTTCCEEECCCCTTCCH
T ss_pred hcCCCCCEEcCCCCCCcCh
Confidence 77777777777777 6664
No 129
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=5.7e-08 Score=76.98 Aligned_cols=68 Identities=26% Similarity=0.310 Sum_probs=56.1
Q ss_pred cCCCCCCEEecCCCcccc--ccCcccccccCCCCCCcEEEccCCcCCccCchhccCCC--CCCEEeccCCccccccCC
Q 029521 99 TPFQQLESLDLIGNNIAG--CVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLS--SLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g--~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~--~L~~L~L~~N~l~g~ip~ 172 (192)
.++++|+.|+|++|.+++ .+|.. +..+++|++|+|++|++++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 358899999999999998 45555 67899999999999999974 3344444 999999999999988774
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=5.6e-10 Score=84.11 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=70.1
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..+++.|++++|.+..++ .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|++++ +| .++
T Consensus 47 l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~l~-~l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp TTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEEEC-SCSSH----HHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred CCCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCCcc-cccch----hhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 357899999999887542 4778899999999999998 57776 7777899999999999986 55 688
Q ss_pred CCCCCCEEeccCCcccc
Q 029521 152 GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++++|++++
T Consensus 113 ~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHHSSEEEESEEECCC
T ss_pred cCCCCCEEECCCCcCCc
Confidence 89999999999999984
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.56 E-value=7.4e-08 Score=84.05 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=28.1
Q ss_pred cEEEccCCcCCccCchhccCCCCCCEEeccCCccccccC
Q 029521 133 KFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 133 ~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip 171 (192)
++|++++|+++ .+|..+..+++|++|+|++|.++|.+|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 77777777776 567667677778888888887777665
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.53 E-value=1.7e-08 Score=82.83 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCC-----CCCCEEecCCCccccccCcccccccCCC-CCCcEEEccCCcCCccCc
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPF-----QQLESLDLIGNNIAGCVENEGLERLSRL-NNLKFLHLDFNCFNNNIF 147 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l-----~~L~~L~Ls~n~l~g~~p~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p 147 (192)
++++|++++|.++..+. ..+..+ +.|+.|++++|.+++..+......+..+ ++|++|++++|++++..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNS-----DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCCCCHHHH-----HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 57777777777654322 122222 7778888888877765444311113334 678888888888876655
Q ss_pred hhcc----C-CCCCCEEeccCCcccc
Q 029521 148 SSLG----G-LSSLRHLSLAGNELDG 168 (192)
Q Consensus 148 ~~l~----~-l~~L~~L~L~~N~l~g 168 (192)
..+. . .++|++|+|++|.+++
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCH
Confidence 5433 3 2578888888888773
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=2.1e-07 Score=73.70 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCch---
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFS--- 148 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~--- 148 (192)
...++.|+|++|.+..+..+ +..+..+++|+.|+|++|.+++. .. ...+..+ +|++|++++|.+++.+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l---~~~~~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELKSE--RE-LDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGG---TTHHHHSTTCCEEECTTSCCCSG--GG-GGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred CCCCCEEECCCCCCCCCccc---hhHHhhCCCCCEEECCCCccCCc--hh-hhhcccC-CcceEEccCCcCccccCcchh
Confidence 35799999999999876542 23456899999999999999874 11 1114444 999999999999987762
Q ss_pred ----hccCCCCCCEEe
Q 029521 149 ----SLGGLSSLRHLS 160 (192)
Q Consensus 149 ----~l~~l~~L~~L~ 160 (192)
.+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 477899999986
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.31 E-value=1.7e-06 Score=76.23 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 102 QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 102 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
++|+.|++++|.+++ +|. .+++|++|++++|+++ .+|. .+++|++|+|++|+|+ .+|.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 567777777777775 542 3467888888888887 4555 5678888888888887 6664
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=7.1e-08 Score=80.92 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=51.5
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCC-CCCCcEEEccCCcCCc----cCchhccCCCCCCEEeccCCccccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSR-LNNLKFLHLDFNCFNN----NIFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~-l~~L~~L~Ls~N~l~g----~~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
+..++.|+.|++++|.+++..+......+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 4456788888888888765433321111222 6788999999998886 7788888888999999999988754
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.27 E-value=3.4e-07 Score=74.97 Aligned_cols=95 Identities=21% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCcEEEEEeCCCCCCCccccccCCccccCCC-CCCEEecCCCccccccCcccccccCCC-----CCCcEEEccCCcCCcc
Q 029521 72 TGRVIKLDLTQTRKWESAEWYMNASLFTPFQ-QLESLDLIGNNIAGCVENEGLERLSRL-----NNLKFLHLDFNCFNNN 145 (192)
Q Consensus 72 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~g~ 145 (192)
...+++|++++|.++..+...+ ...+..++ +|+.|++++|.+++..+.. +..+ ++|++|++++|++++.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccCCCccEEECcCCcCChH
Confidence 3469999999999875442100 03467788 8999999999998765555 4443 8999999999999987
Q ss_pred Cchhcc----CC-CCCCEEeccCCccccccC
Q 029521 146 IFSSLG----GL-SSLRHLSLAGNELDGSVD 171 (192)
Q Consensus 146 ~p~~l~----~l-~~L~~L~L~~N~l~g~ip 171 (192)
.+..+. .+ ++|++|+|++|.+++..+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 777544 44 899999999999976543
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=3.3e-06 Score=68.11 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=74.3
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCc-EEEccCCcCCccCchhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLK-FLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~-~L~Ls~N~l~g~~p~~l~ 151 (192)
..++.+++++|.++.++. ..|.++++|+.+++++| +.. ++... |.++++|+ .+++.. +++..-+..|.
T Consensus 226 ~~L~~l~L~~n~i~~I~~-----~aF~~~~~L~~l~l~~n-i~~-I~~~a---F~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPD-----FTFAQKKYLLKIKLPHN-LKT-IGQRV---FSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBCCCEECT-----TTTTTCTTCCEEECCTT-CCE-ECTTT---TTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECCCCCcceecH-----hhhhCCCCCCEEECCcc-cce-ehHHH---hhCChhccEEEEEcc-cceEEchhhhh
Confidence 468999999998887765 68999999999999998 654 55542 99999999 999998 77766678999
Q ss_pred CCCCCCEEeccCCccccccCC
Q 029521 152 GLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 152 ~l~~L~~L~L~~N~l~g~ip~ 172 (192)
++++|+.++++.|.++ .|+.
T Consensus 295 ~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 295 GCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp TCTTEEEEEECSSCCC-EECT
T ss_pred CCccCCEEEeCCCccC-ccch
Confidence 9999999999999987 5554
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.16 E-value=4.7e-06 Score=67.87 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=48.2
Q ss_pred cEEEEEeCC-CCCCCccccccCCccccCCC-CCCEEecCCCccccccCcccccccCCCCCCcEEEccC-CcCCccCc-hh
Q 029521 74 RVIKLDLTQ-TRKWESAEWYMNASLFTPFQ-QLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF-NCFNNNIF-SS 149 (192)
Q Consensus 74 ~v~~L~L~~-~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~-N~l~g~~p-~~ 149 (192)
++..+++.+ +.+..++. ..|..+. .++.|++++|.++. +|.. .....+|+++++++ |.++ .+| ..
T Consensus 129 ~l~~l~l~~~~~i~~l~~-----~~f~~~~~~l~~L~L~~N~i~~-i~~~----~f~~~~L~~l~l~~~n~l~-~i~~~~ 197 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNKNGIQE-IHNS----AFNGTQLDELNLSDNNNLE-ELPNDV 197 (350)
T ss_dssp SCEEEEEESCTTCCEECT-----TSSTTSBSSCEEEECCSSCCCE-ECTT----SSTTEEEEEEECTTCTTCC-CCCTTT
T ss_pred hhhhhhhccccccccccc-----cchhhcchhhhhhccccccccC-CChh----hccccchhHHhhccCCccc-CCCHHH
Confidence 345565543 34443332 3344443 46667777777763 5544 34455667777654 4444 444 45
Q ss_pred ccCCCCCCEEeccCCccccccCC
Q 029521 150 LGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 150 l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
|.++++|++|+|++|+|+ .+|.
T Consensus 198 f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp TTTEECCSEEECTTSCCC-CCCS
T ss_pred hccCcccchhhcCCCCcC-ccCh
Confidence 666777777777777766 4443
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.16 E-value=1.2e-07 Score=79.45 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=17.7
Q ss_pred CCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCccc
Q 029521 131 NLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 131 ~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 444444444444432 3333444455555555555554
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=3.5e-07 Score=75.62 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=34.5
Q ss_pred cCCCCCCEEecCCCccccc----cCcccccccCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCccc
Q 029521 99 TPFQQLESLDLIGNNIAGC----VENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 99 ~~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
...+.|+.|+|++|.++.. ++.. +...++|++|++++|.+++. ++..+...++|++|+|++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~----L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQ----LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHH----GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHH----HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3455566666666655431 1222 44455666666666666542 2233444566666666666664
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=5.7e-07 Score=74.36 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCCCCEEecCCCccccc----cCcccccccCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCcccc
Q 029521 100 PFQQLESLDLIGNNIAGC----VENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
..+.|+.|++++|.++.. ++.. +...++|++|++++|++++. ++..+...++|++|+|++|.++.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHH----HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHH----HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 356788888888877542 2222 46677888888888888653 34556677788888888888763
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=1.5e-06 Score=64.77 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCccccc----cCcccccccCCCCCCcEEEc--cCCcCCcc--
Q 029521 74 RVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNNIAGC----VENEGLERLSRLNNLKFLHL--DFNCFNNN-- 145 (192)
Q Consensus 74 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~L--s~N~l~g~-- 145 (192)
.+++|+|++|.+..-+...+ ...+...+.|+.|+|++|.++.. +... +...++|++|++ ++|.++..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l-~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~----L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGILALVEA----LQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHG----GGGCSSCCEEECCCCSSCCCHHHH
T ss_pred CcCEEECcCCCCChHHHHHH-HHHHHhCCCcCEEECcCCcCCHHHHHHHHHH----HHhCCCceEEEecCCCCCCCHHHH
Confidence 45666666665543221000 01233345566666666666532 2222 455556666666 56666543
Q ss_pred --CchhccCCCCCCEEeccCCccc
Q 029521 146 --IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 146 --~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233444466666666666653
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=1.5e-06 Score=64.84 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCcEEEEEeCCC-CCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc----C
Q 029521 72 TGRVIKLDLTQT-RKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN----I 146 (192)
Q Consensus 72 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~ 146 (192)
...+++|+|++| .+..-+...+ ...+...+.|+.|+|++|.+...-.......+...++|++|++++|.++.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 457999999999 8864222111 123566789999999999986431111011155668899999999999864 4
Q ss_pred chhccCCCCCCEEec--cCCcccc
Q 029521 147 FSSLGGLSSLRHLSL--AGNELDG 168 (192)
Q Consensus 147 p~~l~~l~~L~~L~L--~~N~l~g 168 (192)
...+...++|++|+| ++|.++.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCceEEEecCCCCCCCH
Confidence 566777889999999 8899863
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=8.5e-06 Score=60.47 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=63.8
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCCEEecCCCc-cccccCcccccccCCC----CCCcEEEccCCc-CCccC
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLESLDLIGNN-IAGCVENEGLERLSRL----NNLKFLHLDFNC-FNNNI 146 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l----~~L~~L~Ls~N~-l~g~~ 146 (192)
-.+++||++++.++..+- ..+..+++|+.|+|+++. ++..--.. +..+ ++|++|+++++. ++..-
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 369999999998876543 346789999999999985 55321112 4554 479999999975 87655
Q ss_pred chhccCCCCCCEEeccCCc
Q 029521 147 FSSLGGLSSLRHLSLAGNE 165 (192)
Q Consensus 147 p~~l~~l~~L~~L~L~~N~ 165 (192)
-..+.++++|++|+++++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 5668889999999999875
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.75 E-value=4.6e-06 Score=71.97 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCCCCEEecCCCcccc-ccCcccccccCCCCCCcEEEccCCcCCcc-CchhccCCCCCCEEeccCCccccc
Q 029521 100 PFQQLESLDLIGNNIAG-CVENEGLERLSRLNNLKFLHLDFNCFNNN-IFSSLGGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g-~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~-~p~~l~~l~~L~~L~L~~N~l~g~ 169 (192)
.+++|+.|++++|.+++ .++.. +..+++|++|++++|.+++. ++..+..+++|++|+|++|++++.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHH----HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHH----HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 47789999999998876 34444 67889999999999998765 444556789999999999998754
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.00011 Score=59.14 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=64.6
Q ss_pred CcEEEEEeCCCCCCCccccccCCccccCCCCCC-EEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhcc
Q 029521 73 GRVIKLDLTQTRKWESAEWYMNASLFTPFQQLE-SLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLG 151 (192)
Q Consensus 73 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~-~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~ 151 (192)
..++++++.+| +..++. ..|.++++|+ .+++.+ .++. +++.. |.++++|+.++++.|+++..-+..|.
T Consensus 250 ~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~-~l~~-I~~~a---F~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPA-SVTA-IEFGA---FMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECT-TCCE-ECTTT---TTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcc-cceE-Echhh---hhCCccCCEEEeCCCccCccchhhhc
Confidence 46889999987 665554 7899999999 999998 6664 44332 99999999999999999977778999
Q ss_pred CCCCCCEEec
Q 029521 152 GLSSLRHLSL 161 (192)
Q Consensus 152 ~l~~L~~L~L 161 (192)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999999863
No 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.46 E-value=0.00031 Score=49.28 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=36.7
Q ss_pred EEEeCCCCCC--CccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCC
Q 029521 77 KLDLTQTRKW--ESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFN 143 (192)
Q Consensus 77 ~L~L~~~~l~--~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 143 (192)
.++.++++++ .++. .+ -+.++.|+|++|.|+. +|... |..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~------~l--p~~l~~L~Ls~N~l~~-l~~~~---f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT------AF--PVDTTELVLTGNNLTA-LPPGL---LDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS------CC--CTTCSEEECTTSCCSS-CCTTT---GGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC------CC--CcCCCEEECCCCcCCc-cChhh---hhhccccCEEEecCCCee
Confidence 6677777776 5543 11 1357888888888875 44432 677778888888888774
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.39 E-value=1.6e-05 Score=68.50 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCCCEEecCCCccccccCccccccc-CCCCCCcEEEccCCcCCccCch-hccCCCCCCEEeccCCccc
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERL-SRLNNLKFLHLDFNCFNNNIFS-SLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~-~l~~l~~L~~L~L~~N~l~ 167 (192)
+++|+.|++++|.+++..+.. + ..+++|++|++++|.+++..+. .+..+++|++|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~----l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHH----VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHH----HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHH----HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555666666666654432222 2 4456666666666666543332 2334666666666666653
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.17 E-value=3.6e-05 Score=66.28 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=50.3
Q ss_pred ccCCCCCCEEecCCCccccccCcccccccCC-CCCCcEEEccCCcCCccCchhc-cCCCCCCEEeccCCccccc
Q 029521 98 FTPFQQLESLDLIGNNIAGCVENEGLERLSR-LNNLKFLHLDFNCFNNNIFSSL-GGLSSLRHLSLAGNELDGS 169 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~-l~~L~~L~Ls~N~l~g~~p~~l-~~l~~L~~L~L~~N~l~g~ 169 (192)
+..+++|+.|++++ .+++..+.. +.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred HhhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 45677888888876 555443333 444 7889999999999987666555 6789999999999998643
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.15 E-value=0.00011 Score=63.33 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=44.4
Q ss_pred CCCCCCEEecCCCccccc----cCcccccccCCCCCCcEEEccCCcCC----ccCchhccCCCCCCEEeccCCcccc
Q 029521 100 PFQQLESLDLIGNNIAGC----VENEGLERLSRLNNLKFLHLDFNCFN----NNIFSSLGGLSSLRHLSLAGNELDG 168 (192)
Q Consensus 100 ~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~Ls~N~l~----g~~p~~l~~l~~L~~L~L~~N~l~g 168 (192)
.+++|+.|++++|.+++. ++.. ...+++|++|+++.|.++ +.++..+.++++|++|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 567888888888877654 2222 455677788888888776 3444555667788888887777654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.84 E-value=0.00017 Score=59.41 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCCCCcEEEccCCcCCccCchhcc---CCCCCCEEeccCCcccc
Q 029521 128 RLNNLKFLHLDFNCFNNNIFSSLG---GLSSLRHLSLAGNELDG 168 (192)
Q Consensus 128 ~l~~L~~L~Ls~N~l~g~~p~~l~---~l~~L~~L~L~~N~l~g 168 (192)
.+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 356677777766666543333332 35666777776666654
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0026 Score=44.41 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=34.9
Q ss_pred EEecCCCccc-cccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 106 SLDLIGNNIA-GCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 106 ~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
.++.+++.++ ..+|.. + .++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 235543 2 235677777777777544556667777777777777653
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.64 E-value=0.0056 Score=50.82 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=43.9
Q ss_pred CccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
...|..+++|+.+++.+ .+.. ++.. .|.++++|+.+++..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~~-I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIRI-LGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCCE-ECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred HHHhhCCccCCeEEeCC-ceEE-Ehhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 35566667777777763 3442 3333 2777788888888554 554555678888 8888888888765
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.27 E-value=0.0066 Score=50.36 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=48.1
Q ss_pred CccccCCCCCCEEecCCCccc----cccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 95 ASLFTPFQQLESLDLIGNNIA----GCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l~----g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
...|..+++|+.+++.+|.+. ..++.. .|.++++|+.+++. +.++..-...|.++++|+.+.+..|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 457888888888888887664 124443 28888888888888 4566555567888889998888655
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.26 E-value=0.0026 Score=47.01 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCc-CCccCchhccCC----CCCCEEeccCCc-cc
Q 029521 102 QQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNC-FNNNIFSSLGGL----SSLRHLSLAGNE-LD 167 (192)
Q Consensus 102 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~-l~g~~p~~l~~l----~~L~~L~L~~N~-l~ 167 (192)
.+|+.||++++.++..--.. +..+++|++|+|+++. ++..--..++.+ ++|++|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 46999999999876432233 7899999999999985 776544556665 479999999985 64
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.23 E-value=0.0012 Score=49.62 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=43.6
Q ss_pred CcEEEEEeCCC-CCCCccccccCCccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc----Cc
Q 029521 73 GRVIKLDLTQT-RKWESAEWYMNASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN----IF 147 (192)
Q Consensus 73 ~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p 147 (192)
..+++|+|+++ .+..-+...+ ...+..-+.|+.|+|++|.+...--......+..-+.|++|+|++|.|+.. +-
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 45667777664 5532111000 012344456667777777665321111001133345666677777766542 22
Q ss_pred hhccCCCCCCEEeccCC
Q 029521 148 SSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 148 ~~l~~l~~L~~L~L~~N 164 (192)
+.+..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 23444455666666643
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.10 E-value=0.0017 Score=53.25 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCccc
Q 029521 101 FQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 101 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+++|+.|++++|.+....+.... ....+++|++|+++.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 56666666666665432222100 013466777888877777653 2333345677788888777765
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.47 E-value=0.033 Score=45.58 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=38.5
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
..|.++.+|+.+++..+ ++ .+... .|.++++|+.+++..| ++..-..+|.++.+|+.+++..+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VE-EIGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCc-cc-EEhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 45666777777777543 33 23332 1677777777777655 54344456777777777776544
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.45 E-value=0.0071 Score=45.42 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=49.7
Q ss_pred ccCCCCCCEEecCCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----CchhccCCCCCCEEeccCCccc
Q 029521 98 FTPFQQLESLDLIGN-NIAGCVENEGLERLSRLNNLKFLHLDFNCFNNN----IFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 98 ~~~l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~----~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
+.+-+.|+.|+|++| .+...--......+..-+.|+.|+|++|++... +...+..-+.|++|+|+.|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445678999999986 764321011112267778999999999999753 3344545689999999999996
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.04 E-value=0.09 Score=42.96 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=45.7
Q ss_pred CccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCcc
Q 029521 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNEL 166 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l 166 (192)
...|.++.+|+.+++..+ ++ .+... .|.++++|+.+.+..+ ++..-...|.++++|+.+++.+|..
T Consensus 304 ~~aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPEG-IT-QILDD---AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred ceeecCCCCcCEEEeCCc-cc-EehHh---HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 356777788888887654 33 23333 2788888888888654 5544456788888898888887754
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.30 E-value=0.094 Score=42.42 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=38.5
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
..|..+++|+.+++.++.++. ++... |.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~-I~~~a---F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIET-LEPRV---FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCE-ECTTT---TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccce-ehhhh---hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 456666777777776666653 33321 667777777777543 44333456777777777666443
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.73 E-value=0.21 Score=40.28 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=48.6
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGN 164 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N 164 (192)
..|..+..|+.+++..+ +. .++.. .|.++++|+.+++..+.++..-...|.++.+|+.+.|.++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 46777778888887654 33 24433 2888999999999988888555678999999999999755
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.23 E-value=0.16 Score=41.48 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.3
Q ss_pred CccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccc
Q 029521 95 ASLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELD 167 (192)
Q Consensus 95 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~ 167 (192)
...|.++.+|+.+.+..+ ++ .+.... |.++++|+.+++.++... -..+....+|+.+.+..|.+.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~-~I~~~a---F~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VT-KIPESA---FSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC-BCCGGG---GTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred HhHhhCCCCCCEEEECcc-cC-EEhHhH---hhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 367999999999999765 44 354442 999999999999987653 245777888998888776553
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.50 E-value=1.2 Score=36.24 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=47.3
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccCCcCCccCchhccCCCCCCEEeccCCccccccCC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDFNCFNNNIFSSLGGLSSLRHLSLAGNELDGSVDI 172 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 172 (192)
..|..+..|+.+.+..+ +. .++.. .|.++++|+.+++..+ ++..-...|.++.+|+.+++..| ++ .|+.
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~ 359 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-FIGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGA 359 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECT
T ss_pred ccccccccccccccccc-cc-eechh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehH
Confidence 34666777777777654 33 24433 2888999999999754 66445578899999999999766 43 4443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.59 E-value=32 Score=22.14 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=25.9
Q ss_pred ccccCCCCCCEEecCCCccccccCcccccccCCCCCCcEEEccC
Q 029521 96 SLFTPFQQLESLDLIGNNIAGCVENEGLERLSRLNNLKFLHLDF 139 (192)
Q Consensus 96 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~Ls~ 139 (192)
..|.++..|+.+.+..+- +. |-.. .|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~-Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GL-LYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SC-CCTT---SSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch-he-EcHH---HHhccCCccEEEEcC
Confidence 578888888888877653 21 3222 177888888887655
No 166
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=23.14 E-value=29 Score=21.78 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.6
Q ss_pred CCchHHhhhhhhcC
Q 029521 179 IPSPVSHLLWILFH 192 (192)
Q Consensus 179 lp~~~~~~~~~~~~ 192 (192)
+..++...+|||+|
T Consensus 52 Ls~FLkt~IWiLsH 65 (94)
T 3ajf_A 52 LSVFLKSAIWMLSH 65 (94)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 45788899999987
Done!