Query 029522
Match_columns 192
No_of_seqs 136 out of 214
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 74.9 35 0.0012 28.2 14.4 8 184-191 199-206 (256)
2 3mq9_A Bone marrow stromal ant 32.5 2.5E+02 0.0084 24.4 13.0 38 125-162 430-470 (471)
3 3ljm_A Coil Ser L9C; de novo d 30.0 84 0.0029 18.9 3.9 24 102-131 3-26 (31)
4 3viq_A SWI5-dependent recombin 26.7 2.1E+02 0.0072 21.8 8.1 61 113-173 7-67 (122)
5 3umh_A Amyloid beta A4 protein 21.4 3.6E+02 0.012 22.6 8.1 65 85-165 28-92 (211)
6 3k66_A Beta-amyloid-like prote 20.5 4E+02 0.014 22.8 11.1 71 85-165 23-94 (239)
7 3sjd_D Golgi to ER traffic pro 16.4 1.1E+02 0.0039 20.1 2.8 24 79-102 11-34 (46)
8 2p2u_A HOST-nuclease inhibitor 16.0 4E+02 0.014 20.8 7.7 40 116-155 26-65 (171)
9 3oja_B Anopheles plasmodium-re 14.1 6.4E+02 0.022 22.2 11.9 48 137-184 539-586 (597)
10 3vkg_A Dynein heavy chain, cyt 13.6 1.5E+03 0.05 26.2 14.5 50 112-162 1933-1982(3245)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.91 E-value=35 Score=28.25 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=5.8
Q ss_pred CCCcCccC
Q 029522 184 KKLLSCFG 191 (192)
Q Consensus 184 ~k~~gCF~ 191 (192)
+.|.|||-
T Consensus 199 ~~C~GC~~ 206 (256)
T 3na7_A 199 QACGGCFI 206 (256)
T ss_dssp TBCTTTCC
T ss_pred CccCCCCe
Confidence 34889993
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.55 E-value=2.5e+02 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029522 125 IEEQLEKKKAEYV---EKMKNKMALIHKEAEEKRAMIEAKR 162 (192)
Q Consensus 125 iE~KLEkkRA~a~---EKm~nKiA~a~kkAEekRA~aEAkr 162 (192)
+..-||++.+... +.+-+.|...+++-++.||.++.+|
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666543 3344666667777777777766554
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.02 E-value=84 Score=18.86 Aligned_cols=24 Identities=46% Similarity=0.782 Sum_probs=16.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 029522 102 WEESEKSQAENNRKAAVEAELKKIEEQLEK 131 (192)
Q Consensus 102 WEeaEKaKa~n~kKAKAEA~mrKiE~KLEk 131 (192)
||--+| +=+..|.+|+-+|.+||-
T Consensus 3 wealek------kcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEK------KCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 776654 346677888888777763
No 4
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=26.70 E-value=2.1e+02 Score=21.75 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 029522 113 NRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELA 173 (192)
Q Consensus 113 ~kKAKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA 173 (192)
.++..++.+++.++.+|+..+....=.-.|+...+...-..+|.....--.+=...+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv 67 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERI 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999998888888888888888888888776655444444444443
No 5
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=21.41 E-value=3.6e+02 Score=22.57 Aligned_cols=65 Identities=25% Similarity=0.415 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029522 85 AVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGE 164 (192)
Q Consensus 85 ~~lakve~Ekr~akI~AWEeaEKaKa~n~kKAKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekRA~aEAkr~e 164 (192)
..|...-++++.-.++-|++++.. +.|+.|+ + |-..+++|+..+..+...+..-|-+..+-+..
T Consensus 28 ~~Le~~hr~k~~~VmkEW~eae~q-~k~l~ka-------------d--kk~~~~rFQ~~v~aLE~E~~~ErqqL~etH~q 91 (211)
T 3umh_A 28 ERLEAKHRERMSQVMREWEEAERQ-AKNLPKA-------------D--KKAVIQHFQEKVESLEQEAANERQQLVETHMA 91 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TSSSCHH-------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcchh-------------H--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 556666788888889999999764 3355443 1 44889999999999988887777665555444
Q ss_pred h
Q 029522 165 D 165 (192)
Q Consensus 165 e 165 (192)
.
T Consensus 92 R 92 (211)
T 3umh_A 92 R 92 (211)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=20.51 E-value=4e+02 Score=22.76 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029522 85 AVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIE-EQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRG 163 (192)
Q Consensus 85 ~~lakve~Ekr~akI~AWEeaEKaKa~n~kKAKAEA~mrKiE-~KLEkkRA~a~EKm~nKiA~a~kkAEekRA~aEAkr~ 163 (192)
..|....++++.-.++-|++++.. + ..|++.. ...|.+|...+++|+..+..+...+..-|-+..+-+.
T Consensus 23 ~rLe~~hr~km~kVMkEW~Eae~q-~---------k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~ 92 (239)
T 3k66_A 23 MRMDEKHRKKVDKVMKEWGDLETR-Y---------NEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHE 92 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-H---------HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H---------HhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666688888889999998652 1 2345554 5688999999999999999999988887776666554
Q ss_pred hh
Q 029522 164 ED 165 (192)
Q Consensus 164 ee 165 (192)
..
T Consensus 93 qR 94 (239)
T 3k66_A 93 ER 94 (239)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 7
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=16.37 E-value=1.1e+02 Score=20.07 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=15.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Q 029522 79 GSVNRDAVLARVETEKRISLIRAW 102 (192)
Q Consensus 79 gs~~rd~~lakve~Ekr~akI~AW 102 (192)
||--++.--+|+.+|+|.++|.+=
T Consensus 11 ~~~lsa~EkaRLrRERR~aKi~~G 34 (46)
T 3sjd_D 11 GSELTEAEKRRLLRERRQKKFSNG 34 (46)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcc
Confidence 555566677888999998888764
No 8
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=15.99 E-value=4e+02 Score=20.84 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029522 116 AAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKR 155 (192)
Q Consensus 116 AKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekR 155 (192)
+.++++|..++..+....+++.+++...++.++-..+...
T Consensus 26 a~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~ 65 (171)
T 2p2u_A 26 ATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELE 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777776666666666666666655544443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=14.07 E-value=6.4e+02 Score=22.20 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCC
Q 029522 137 VEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPK 184 (192)
Q Consensus 137 ~EKm~nKiA~a~kkAEekRA~aEAkr~ee~~Ka~EkA~kiRaTGk~P~ 184 (192)
.+.+++++..+.+.-++++.....-+.+-.....+.-..+..+..-|.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345557777777777777777666555544445566666667766654
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=13.63 E-value=1.5e+03 Score=26.18 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029522 112 NNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKR 162 (192)
Q Consensus 112 n~kKAKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekRA~aEAkr 162 (192)
+.+......+|...+.+|+++...+ +++..+|..-+..|++++..+++..
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea-~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQA-NQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888876654 5566777777788888877665433
Done!