Query 029522
Match_columns 192
No_of_seqs 136 out of 214
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 23:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029522.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029522hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oaoc_ e.26.1.3 (C:) Bifuncti 15.5 19 0.0014 33.0 0.7 9 183-191 591-599 (729)
2 d2clyb1 f.53.1.1 (B:4-123) ATP 7.0 2.7E+02 0.019 19.2 4.4 18 116-133 102-119 (120)
3 d1rw6a_ a.47.4.1 (A:) CAPPD, a 6.7 4.7E+02 0.034 19.5 8.7 65 85-165 23-87 (192)
4 d1dfup_ b.53.1.1 (P:) Ribosoma 6.5 38 0.0027 22.6 -0.7 17 172-188 16-32 (94)
5 d2azea1 e.63.1.1 (A:199-346) T 6.0 4.2E+02 0.031 19.1 5.2 29 118-146 7-35 (148)
6 d256ba_ a.24.3.1 (A:) Cytochro 4.8 2.6E+02 0.019 18.5 3.0 16 126-141 91-106 (106)
7 d1zl8a1 a.194.1.1 (A:4-53) Lin 4.8 2.8E+02 0.02 16.9 2.8 22 164-185 4-25 (50)
8 d1fs0g_ c.49.2.1 (G:) ATP synt 4.8 3.9E+02 0.028 19.0 4.3 28 109-136 1-28 (230)
9 d1gph11 c.61.1.1 (1:235-465) G 4.1 58 0.0042 25.5 -1.2 7 186-192 203-209 (231)
10 d1mmca_ g.3.1.2 (A:) Antimicro 3.9 1.5E+02 0.011 16.2 0.8 12 180-191 7-19 (30)
No 1
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=15.50 E-value=19 Score=33.02 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=5.8
Q ss_pred CCCCcCccC
Q 029522 183 PKKLLSCFG 191 (192)
Q Consensus 183 P~k~~gCF~ 191 (192)
|.++||||-
T Consensus 591 PmTSCGCFE 599 (729)
T d1oaoc_ 591 PMTSCGCFE 599 (729)
T ss_dssp CCCCCSCCS
T ss_pred CCcCchhhh
Confidence 555677774
No 2
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.04 E-value=2.7e+02 Score=19.18 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029522 116 AAVEAELKKIEEQLEKKK 133 (192)
Q Consensus 116 AKAEA~mrKiE~KLEkkR 133 (192)
....+.+..++.+|++++
T Consensus 102 ~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 102 TQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344667788888888775
No 3
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.73 E-value=4.7e+02 Score=19.50 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029522 85 AVLARVETEKRISLIRAWEESEKSQAENNRKAAVEAELKKIEEQLEKKKAEYVEKMKNKMALIHKEAEEKRAMIEAKRGE 164 (192)
Q Consensus 85 ~~lakve~Ekr~akI~AWEeaEKaKa~n~kKAKAEA~mrKiE~KLEkkRA~a~EKm~nKiA~a~kkAEekRA~aEAkr~e 164 (192)
..|..-.++++...++-|+++|. .+.|+.++-- -..+++++..+..+......-|-...+-+.+
T Consensus 23 ~rLee~hr~k~~~VmkeW~eaE~-~~~~l~k~d~---------------K~~~~rFq~~v~~LE~e~~~erq~L~~~H~~ 86 (192)
T d1rw6a_ 23 ERLEAKHRERMSQVMREWEEAER-QAKNLPKADK---------------KAVIQHFQEKVESLEQEAANERQQLVETHMA 86 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSCHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCh---------------HHHHHHHHHHHHHHhhhhHHHHhhHHHHHHH
Confidence 55666678888899999999985 4434444321 1377788888888877666666555544443
Q ss_pred h
Q 029522 165 D 165 (192)
Q Consensus 165 e 165 (192)
.
T Consensus 87 r 87 (192)
T d1rw6a_ 87 R 87 (192)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=6.53 E-value=38 Score=22.58 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.9
Q ss_pred HHHHHHhcCCCCCCCcC
Q 029522 172 LAAKYRATGSAPKKLLS 188 (192)
Q Consensus 172 kA~kiRaTGk~P~k~~g 188 (192)
.+.++|+.|.+|.-.+|
T Consensus 16 ~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 16 ASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHcCCccEEEEC
Confidence 46789999999965443
No 5
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.96 E-value=4.2e+02 Score=19.13 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029522 118 VEAELKKIEEQLEKKKAEYVEKMKNKMAL 146 (192)
Q Consensus 118 AEA~mrKiE~KLEkkRA~a~EKm~nKiA~ 146 (192)
++.+..++...+++|++.+.|=+...++.
T Consensus 7 Le~E~~~~~erI~~K~~~LqeLi~Q~iaf 35 (148)
T d2azea1 7 LEVERQRRLERIKQKQSQLQELILQQIAF 35 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777766666655543
No 6
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=2.6e+02 Score=18.54 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 029522 126 EEQLEKKKAEYVEKMK 141 (192)
Q Consensus 126 E~KLEkkRA~a~EKm~ 141 (192)
=.+|..+|-+|+.||+
T Consensus 91 l~~l~~~r~~YHkk~k 106 (106)
T d256ba_ 91 AEQLKTTRNAYHQKYR 106 (106)
T ss_dssp HTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhcC
Confidence 3566777777777763
No 7
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.78 E-value=2.8e+02 Score=16.89 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCC
Q 029522 164 EDLLKAEELAAKYRATGSAPKK 185 (192)
Q Consensus 164 ee~~Ka~EkA~kiRaTGk~P~k 185 (192)
.++.++-|.-+++.++|.+|..
T Consensus 4 rDv~RaieLle~Lq~sgevp~~ 25 (50)
T d1zl8a1 4 RDVQRILELMEHVQKTGEVNNA 25 (50)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred hHHHHHHHHHHHHHHcCCCChH
Confidence 4677888889999999999854
No 8
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}
Probab=4.77 E-value=3.9e+02 Score=19.04 Aligned_cols=28 Identities=4% Similarity=0.190 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029522 109 QAENNRKAAVEAELKKIEEQLEKKKAEY 136 (192)
Q Consensus 109 Ka~n~kKAKAEA~mrKiE~KLEkkRA~a 136 (192)
|+.+.++.=+-++|+|.+..++.-|..+
T Consensus 1 KITkAMkmVAasKl~kaq~~~~~~r~Y~ 28 (230)
T d1fs0g_ 1 KITKAMEMVAASKMRKSQDRMAASRPYA 28 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 4556688888999999999999988654
No 9
>d1gph11 c.61.1.1 (1:235-465) Glutamine PRPP amidotransferase, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.14 E-value=58 Score=25.45 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=5.2
Q ss_pred CcCccCC
Q 029522 186 LLSCFGS 192 (192)
Q Consensus 186 ~~gCF~~ 192 (192)
|++||+|
T Consensus 203 C~aCFtG 209 (231)
T d1gph11 203 CLACFTG 209 (231)
T ss_dssp ECHHHHS
T ss_pred CCeeeCC
Confidence 6788865
No 10
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=3.92 E-value=1.5e+02 Score=16.24 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=0.0
Q ss_pred CCCCCC-CcCccC
Q 029522 180 GSAPKK-LLSCFG 191 (192)
Q Consensus 180 Gk~P~k-~~gCF~ 191 (192)
|+-|+. ||+=|+
T Consensus 7 grcpsgmccsqfg 19 (30)
T d1mmca_ 7 GRCPSGMCCSQFG 19 (30)
T ss_dssp SCCSTTCEECTTS
T ss_pred ccCCCcchhhhcC
Done!