BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029523
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 36 PMARNF---ILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPS 92
P AR +++LHGLGD+G F K+ P AP PVT N MPS
Sbjct: 17 PAARKATAAVIFLHGLGDTG---HGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73
Query: 93 WFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGG 145
WFDI I ++ S +DES + +A N+ A+ID+EV GI N + + GFSQGG
Sbjct: 74 WFDI--IGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGFSQGG 124
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 36 PMARNFILWLHGLG----DSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMP 91
P A I+WLHGLG D P E ++ + S T++ P AP+ VT N G VMP
Sbjct: 21 PNADACIIWLHGLGADRTDFKPVAEALQMVLPS-----TRFILPQAPSQAVTVNGGWVMP 75
Query: 92 SWFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTHA 151
SW+DI + + + DE L + V A+ID++ A GI + + GFSQGG H
Sbjct: 76 SWYDI--LAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHT 133
Query: 152 EKRN 155
R
Sbjct: 134 AFRR 137
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 42 ILWLHGLG----DSGPANEPIK-TLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDI 96
++WLHGLG D P E ++ +L T T++ P AP PVT N G MPSW+DI
Sbjct: 17 VIWLHGLGADRYDFMPVAEALQESLLT------TRFVLPQAPTRPVTINGGYEMPSWYDI 70
Query: 97 HEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTH 150
+ S +E L + + V +I+ + GID + +F+ GFSQGG H
Sbjct: 71 KAMSPARSISLEE--LEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFH 122
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 33 EQNPMARNFILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPS 92
E AR ++WLHGLG G I F ++ FP A PVT N G M +
Sbjct: 31 EPAKQARFCVIWLHGLGADGHDFVDIVNYF-DVSLDEIRFIFPHADIIPVTINMGMQMRA 89
Query: 93 WFDIHEIPVTA-SSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTH- 150
W+DI + + + D + ++ V+ +ID +V GI N+ + GFSQGG+ T+
Sbjct: 90 WYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYT 149
Query: 151 --AEKRNCWFAILIASYM 166
+R + +++Y+
Sbjct: 150 AITSQRKLGGIMALSTYL 167
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 42 ILWLHGLGDSGPANEP-IKTLFTSP-EFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIHEI 99
+++LHG GDSG IK + F+ K +P+AP T G + WFD
Sbjct: 26 LIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFD--RF 83
Query: 100 PVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTHAEKRN 155
+T P+ S+ + + +ID+EV +GI N + + GFS GG H RN
Sbjct: 84 KITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRN 139
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 38 ARNFILWLHGLGDSGPA----NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSW 93
A + +++LHG G G EP+ +P T + P AP C +G W
Sbjct: 65 ATSLVVFLHGYGADGADLLGLAEPL-----APHLPGTAFVAPDAPEPCRACGFGF---QW 116
Query: 94 FDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAA-GIDPNNVFVCGFSQGGLSFTHAE 152
F I + ++ + + A R++ A D+ +A G+ P + + GFSQG + H
Sbjct: 117 FPIPWLDGSSET-AAAEGMAAAARDLDAFHDERLAEEGLPPEALALVGFSQGTMMALHVA 175
Query: 153 KRNC 156
R
Sbjct: 176 PRRA 179
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 22/137 (16%)
Query: 15 SGTIIFILFFWPSSSYSHEQNPMARNFILWLHGLGDSGPAN------EPIKTLFTSPEFK 68
+G I F P + P+ +++LHG G+ G N ++ P ++
Sbjct: 154 TGVEIPYRLFVPKDVNPDRKYPL----VVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQ 209
Query: 69 LTKWSFPSAPNNPVTCNYGAVMPSWFDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVA 128
+ F AP P ++ + F E P P LL ++ + ++D+
Sbjct: 210 VVHPCFVLAPQCPPNSSWSTL----FTDRENPFNPEKP-----LLAVIKIIRKLLDE--- 257
Query: 129 AGIDPNNVFVCGFSQGG 145
ID N +++ G S GG
Sbjct: 258 YNIDENRIYITGLSMGG 274
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 38 ARNFILWLHGLGDSGPA----NEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSW 93
A + +++LHG G G EP+ +P T + AP+ P C W
Sbjct: 65 ATSLVVFLHGYGADGADLLGLAEPL-----APHLPGTAFV---APDAPEPCRANGFGFQW 116
Query: 94 FDIHEIPVTASSPKDESSLLKAVRNVHAMIDKEVAA-GIDPNNVFVCGFSQGGLSFTHAE 152
F I + ++ + + A R++ A +D+ +A G+ P + + GFSQG + H
Sbjct: 117 FPIPWLDGSSET-AAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVA 175
Query: 153 KRNCWFAILIASYMKNIFC 171
R I + +
Sbjct: 176 PRRAEEIAGIVGFSGRLLA 194
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 11 TVILSGTIIFILFFWPSSSYSHEQNPMARNFILWLHGLGDSGPAN 55
+ SG + F+ F+ P SS+SH+ P R F + GL G N
Sbjct: 128 AAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN 172
>pdb|1GGP|A Chain A, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
Its Relation To The Type 2 Ribosome Inactivating
Proteins
Length = 234
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 97 HEIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTHA 151
H IP + DE+ V + A D+EV+ +D N+ V + G S+ HA
Sbjct: 23 HGIPALNAGALDEARAYATVDS--ANTDEEVSVAVDVTNLAVVAYRAGSNSYFHA 75
>pdb|2K60|A Chain A, Nmr Structure Of Calcium-Loaded Stim1 Ef-Sam
Length = 150
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 104 SSPKDESSLLKAVRNVHAMIDKEVAAGID 132
+S +DE +AVRN+H ++D + +D
Sbjct: 5 ASSEDEKLSFEAVRNIHKLMDDDANGDVD 33
>pdb|3VL8|A Chain A, Crystal Structure Of Xeg
pdb|3VL9|A Chain A, Crystal Structure Of Xeg-Xyloglucan
pdb|3VL9|B Chain B, Crystal Structure Of Xeg-Xyloglucan
Length = 229
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 42 ILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVT 83
++WL LG +GP + T+ T P W S PN T
Sbjct: 126 MVWLAALGGAGPISSTGSTIAT-PTIAGVNWKLYSGPNGDTT 166
>pdb|3VLB|B Chain B, Crystal Structure Of Xeg-Edgp
pdb|3VLB|D Chain D, Crystal Structure Of Xeg-Edgp
Length = 222
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 42 ILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVT 83
++WL LG +GP + T+ T P W S PN T
Sbjct: 119 MVWLAALGGAGPISSTGSTIAT-PTIAGVNWKLYSGPNGDTT 159
>pdb|4H0C|A Chain A, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
pdb|4H0C|B Chain B, Crystal Structure Of PhospholipaseCARBOXYLESTERASE FROM
DYADOBACTER Fermentans Dsm 18053
Length = 210
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 38 ARNFILWLHGLGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPVTCNYGAVMPSWFDIH 97
A+ ++ LHG G + ++ + E + P A NN SW+
Sbjct: 21 AKKAVVXLHGRGGTAADIISLQKVLKLDEXAIYA---PQATNN-----------SWYPYS 66
Query: 98 -EIPVTASSPKDESSLLKAVRNVHAMIDKEVAAGIDPNNVFVCGFSQGGLSFTHAEKRNC 156
PV + P +S+L V V A I+ A GI ++ GFSQG RN
Sbjct: 67 FXAPVQQNQPALDSAL-ALVGEVVAEIE---AQGIPAEQIYFAGFSQGACLTLEYTTRNA 122
Query: 157 WFAILIASYMKNIFCRCLNFG 177
I ++ + + L G
Sbjct: 123 RKYGGIIAFTGGLIGQELAIG 143
>pdb|2QRU|A Chain A, Crystal Structure Of An Alpha/beta Hydrolase Superfamily
Protein From Enterococcus Faecalis
Length = 274
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 NFILWLHG----LGDSGPANEPIKTLFTSPEFKLTKWSFPSAPNNPV 82
N++++LHG G E +K LFTS + + + APN +
Sbjct: 28 NYVVYLHGGGXIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNTKI 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,903,447
Number of Sequences: 62578
Number of extensions: 231223
Number of successful extensions: 575
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)