BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029524
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HST|A Chain A, Crystal Structure Of Globular Domain Of Histone H5 And Its
           Implications For Nucleosome Binding
 pdb|1HST|B Chain B, Crystal Structure Of Globular Domain Of Histone H5 And Its
           Implications For Nucleosome Binding
          Length = 90

 Score = 36.2 bits (82), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 47  KTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD------ELPANFRKILAV-- 98
           ++ SHP Y +MI  A+ A + + GSS  +I KY++  +K       ++  + R++LA   
Sbjct: 3   RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGV 62

Query: 99  --QLKHFAAKGNL 109
             Q K   A G+ 
Sbjct: 63  LKQTKGVGASGSF 75


>pdb|1USS|A Chain A, Yeast Histone H1 Globular Domain Ii, Hho1p Gii, Solution
           Nmr Structures
          Length = 88

 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 48  TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDEL--PANFRKILAVQLKHFAA 105
           +PS   Y +MI +++  L D  GSS   + KY+++    +L   +NF  +    +K    
Sbjct: 4   SPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVE 63

Query: 106 KGNLI 110
            G L+
Sbjct: 64  NGELV 68


>pdb|1YQA|A Chain A, Engineering The Structural Stability And Functional
           Properties Of The Gi Domain Into The Intrinsically
           Unfolded Gii Domain Of The Yeast Linker Histone Hho1p
          Length = 87

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 45  QSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELP-----ANFRKILAVQ 99
           ++ +PS   Y +MI +++  L D  GSS   + KY+    KD  P     +NF  +    
Sbjct: 1   KASSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYV----KDTYPIVGSASNFDYLFNSA 56

Query: 100 LKHFAAKGNLI 110
           +K     G L+
Sbjct: 57  IKKCVENGELV 67


>pdb|2RQP|A Chain A, The Solution Structure Of Heterochromatin Protein
           1-Binding Protein 74 Histone H1 Like Domain
          Length = 88

 Score = 27.3 bits (59), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 51  HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH------------KDELPANFRKILAV 98
            P    ++TEA+ A   KSG+S  AI KY+  K+            K  L     + +  
Sbjct: 9   RPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIK 68

Query: 99  QLKHFAAKGNLIKIRASYK 117
           Q+K   A G+ + ++ S K
Sbjct: 69  QVKGKGASGSFVVVQKSRK 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.125    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,415,261
Number of Sequences: 62578
Number of extensions: 66484
Number of successful extensions: 134
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 7
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)