BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029524
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1
Length = 202
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/175 (58%), Positives = 121/175 (69%), Gaps = 13/175 (7%)
Query: 30 AKEKKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELP 89
A +KKP+APKEKKPK +K +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELP
Sbjct: 28 ATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELP 87
Query: 90 ANFRKILAVQLKHFAAKGNLIKIRASYKLSEAAAGKTKKEIKTKA-------KAPRKTRS 142
ANFRKIL +QLK+ AAKG LIKI+ASYKLSEA +T + TK K PR TR+
Sbjct: 88 ANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRA 147
Query: 143 VTAAAK------IKAESAAAAPPPPKKAKKSAAAKPKQPKSIKSPAAKKAKKAAA 191
AAK + K+ +KS AK KQPKSIKSPAAK+AKK A
Sbjct: 148 TATAAKKTEVPKKAKATPKPKKVGAKRTRKSTPAKAKQPKSIKSPAAKRAKKIAV 202
>sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2
Length = 238
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 38 PKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILA 97
P KKP+ TP+HP Y +M++EA+ AL+++SGSS AI K++E+KHK LPANFRKIL
Sbjct: 44 PGPKKPRV--TPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILL 101
Query: 98 VQLKHFAAKGNLIKIRASYKLSEAAA 123
Q+K A G L K++ SYKL++A A
Sbjct: 102 TQIKKLVAAGKLTKVKGSYKLAKAPA 127
>sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2
Length = 246
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 59/74 (79%)
Query: 48 TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKG 107
+P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK A G
Sbjct: 47 SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGG 106
Query: 108 NLIKIRASYKLSEA 121
L K++ SYKLS A
Sbjct: 107 KLTKVKNSYKLSSA 120
>sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
Length = 273
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 44 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHF 103
K+ T SHP Y +MI +A++ L++++GSS YAI K++EEKHK LP FRK+L V LK
Sbjct: 55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRL 113
Query: 104 AAKGNLIKIRASYKLSEAAAGKT 126
A L+K++AS+K+ A + T
Sbjct: 114 VASEKLVKVKASFKIPSARSAAT 136
>sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1
Length = 287
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 44 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHF 103
K+S TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K LP+NF+K+L QLK F
Sbjct: 49 KRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKS-LPSNFKKLLLTQLKKF 107
Query: 104 AAKGNLIKIRASYKL 118
A L+K++ SYKL
Sbjct: 108 VASEKLVKVKNSYKL 122
>sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3
Length = 241
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 63/90 (70%), Gaps = 3/90 (3%)
Query: 33 KKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPAN 91
K PKA +KKPK + P+HPPY QM+T+A+++L+++ GSS A+ K++E K+ KD
Sbjct: 9 KAPKAKTQKKPKTA--PTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKK 66
Query: 92 FRKILAVQLKHFAAKGNLIKIRASYKLSEA 121
F K L++ LK F G L+K++ SYKLS+A
Sbjct: 67 FPKTLSLALKTFVKNGKLVKVKNSYKLSDA 96
>sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1
Length = 229
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 41 KKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQL 100
KKPK T SHP +F+MI++A+ L++++GSS YAI K++E+KHK +LP+NFRK+L L
Sbjct: 41 KKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHL 99
Query: 101 KHFAAKGNLIKIRASYK 117
K A G L+K++ S+K
Sbjct: 100 KKLVASGKLVKVKNSFK 116
>sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1
Length = 265
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNL 109
SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L LK A G L
Sbjct: 61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKL 119
Query: 110 IKIRASYKLS 119
IK++ S+KLS
Sbjct: 120 IKVKGSFKLS 129
>sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3
Length = 261
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGN 108
+HPPY +M+ +A+ L++++GSS A+ K++E K+ KD NF K L+ +K F G
Sbjct: 58 THPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGK 117
Query: 109 LIKIRASYKLSEAAAGKTKKEIKTKAKA 136
L+K++ S+KLSEA K KK KAKA
Sbjct: 118 LVKVKGSFKLSEALKAKAKKSTPKKAKA 145
>sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1
Length = 274
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 43 PKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKH 102
PK+ SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP FRK+L + LK
Sbjct: 54 PKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKR 112
Query: 103 FAAKGNLIKIRASYKL 118
A G L+K++AS+KL
Sbjct: 113 LVASGKLVKVKASFKL 128
>sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1 PE=1 SV=3
Length = 180
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
P+HP Y MI+ A+ +D++GSS AI KY+E + + P F+ L + LK AKG
Sbjct: 22 PNHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANY-NVAPDTFKTQLKLALKRLVAKGT 80
Query: 109 LIKIRASYKLSE 120
L ++ASYKLSE
Sbjct: 81 LTMVKASYKLSE 92
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 38 PKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILA 97
P E P ++ T + P Y +I EAL AL D +GS +I ++E +H E+P NFR+IL+
Sbjct: 108 PSELIPDEN-TKNAPRYDGVIFEALSALADGNGSDVSSIYHFIEPRH--EVPPNFRRILS 164
Query: 98 VQLKHFAAKGNLIKI 112
+L+ AA+ L K+
Sbjct: 165 TRLRRLAAQSKLEKV 179
>sp|P40266|H11_GLYSA Histone H1-I OS=Glyptotendipes salinus PE=3 SV=1
Length = 233
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 2 ATEGEAVTEQQPAAEEPEKVVTEKKAKAAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEA 61
A E E E+ P A P K + +A K KK + K KKPK P+HPP +M+ A
Sbjct: 5 APEIETPVEEAPKAATPAKSPAKSPGRAKKAKKDGSDKPKKPKA--IPTHPPVSEMVVNA 62
Query: 62 LMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQ---LKHFAAKGNLIKIR----- 113
L L +K GSS AI K++ +K E+ K+L LK KG +++++
Sbjct: 63 LKTLNEKGGSSVIAIKKFLVATYKVEI----EKLLPFIKKFLKGAVLKGEVLQVKGTGAS 118
Query: 114 ASYKLSEAAAGKTKKEIKTKAKAPR 138
S+K+ A K E K KAPR
Sbjct: 119 GSFKMPPPAKKVDKPEAAPKKKAPR 143
>sp|O17536|H14_CAEEL Histone H1.4 OS=Caenorhabditis elegans GN=hil-4 PE=2 SV=3
Length = 253
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 16/102 (15%)
Query: 33 KKPKAPKEKKPKQSKTP------SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK- 85
K KA K K K +K P +HPP+ M+TEA+ +++D+ G S AI KY+ K+
Sbjct: 28 KATKASKATKAKTTKVPMVKADAAHPPFINMVTEAISSIKDRKGPSRAAILKYITTKYTL 87
Query: 86 ----DELPANFRKILAVQLKHFA---AKGNLIKIRASYKLSE 120
+++ A+ RK L L+ A A GN R ++L+E
Sbjct: 88 GDQANKINAHLRKALNKGLESNAFVQASGNGANGR--FRLAE 127
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASY 116
+I EA+ L++ GS +I Y+EE K P N ++ +AV+LKH ++ G L+KI+ Y
Sbjct: 128 IIFEAITNLRELRGSDRTSIFLYIEENFKT--PPNMKRHVAVRLKHLSSNGTLVKIKHKY 185
Query: 117 KLS 119
+ S
Sbjct: 186 RFS 188
>sp|P40263|H11_GLYBA Histone H1-I OS=Glyptotendipes barbipes PE=3 SV=1
Length = 233
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 2 ATEGEAVTEQQPAAEEPEKVVTEKKAKAAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEA 61
A E E E+ P A P K + +A K KK + K KKPK P+HPP +M+ A
Sbjct: 5 APEIETPVEEAPKAASPAKSPAKSPGRAKKAKKDGSDKPKKPKA--IPTHPPVSEMVVNA 62
Query: 62 LMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQ---LKHFAAKGNLIKIRAS 115
L L +K GSS AI K++ +K E+ K+L LK KG +++++ +
Sbjct: 63 LKTLNEKGGSSVIAIKKFLVATYKVEI----EKLLPFIKKFLKGAVLKGEVLQVKGT 115
>sp|Q24704|H11_DROVI Histone H1.1 OS=Drosophila virilis GN=His1.1 PE=3 SV=1
Length = 250
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
PSHPP QM+ ++ L+++ GSS AI KY+ +K + + LK+ A GN
Sbjct: 43 PSHPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYKCDAQ-KLAPFIKKYLKNAVANGN 101
Query: 109 LIKIR-----ASYKLSEAAAGKTKKEIKTKAKAP-RKTRSVTAAA 147
+I+ + S+KLS +A K+ K KA A +KT+ V A+A
Sbjct: 102 VIQTKGKGASGSFKLSASA----NKDAKPKASAVEKKTKKVNASA 142
>sp|P15796|H12_CAEEL Histone H1.2 OS=Caenorhabditis elegans GN=hil-2 PE=1 SV=3
Length = 191
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 33 KKPKAPKEK---KPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK--DE 87
K PKAPK K +PK +HPP+ M+T A+ +L+++ GSS AI KY+ +K D+
Sbjct: 17 KAPKAPKSKTTKEPKAKVAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKVGDQ 76
Query: 88 L 88
L
Sbjct: 77 L 77
>sp|O16277|H16_CAEEL Putative histone H1.6 OS=Caenorhabditis elegans GN=hil-6 PE=3
SV=3
Length = 190
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 33 KKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK--DE--- 87
K PKA K PK +HPP+ M+T A+ +L+++ GSS AI KY+ +K D+
Sbjct: 17 KAPKANATKVPKVKTAAAHPPFINMVTAAISSLKERKGSSKIAILKYITANYKLGDQVKK 76
Query: 88 LPANFRKIL 96
+ +N R L
Sbjct: 77 INSNLRSAL 85
>sp|Q94972|H13_DROVI Histone H1.3 OS=Drosophila virilis GN=His1.3 PE=3 SV=1
Length = 250
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 17/108 (15%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDE---LPANFRKILAVQLKHFAA 105
PSHPP QM+ ++ L+++ GSS AI KY+ +K + L +K LK+ A
Sbjct: 43 PSHPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYKCDAQKLAPFIKKY----LKNAVA 98
Query: 106 KGNLIKIR-----ASYKLSEAAAGKTKKEIKTKAKAP-RKTRSVTAAA 147
G LI+ + S+KLS +A KK+ K KA A +KT+ V A+A
Sbjct: 99 NGKLIQTKGKGASGSFKLSRSA----KKDAKPKASAVEKKTKKVNASA 142
>sp|P02255|H1_DROME Histone H1 OS=Drosophila melanogaster GN=His1 PE=1 SV=1
Length = 256
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 3 TEGEAVTEQQPAAEEP---EKVVTEKKAKAAKEKKPKAPKEKKPKQSKTPSHPPYFQMIT 59
++ T P A P EK V +KKA + K K K S TPSHPP QM+
Sbjct: 2 SDSAVATSASPVAAPPATVEKKVVQKKASGSAGTKAK-------KASATPSHPPTQQMVD 54
Query: 60 EALMALQDKSGSSPYAIAKYMEEKHKDE---LPANFRKILAVQLKHFAAKGNLIKIR--- 113
++ L+++ GSS AI KY+ +K + L +K LK G LI+ +
Sbjct: 55 ASIKNLKERGGSSLLAIKKYITATYKCDAQKLAPFIKKY----LKSAVVNGKLIQTKGKG 110
Query: 114 --ASYKLSEAA 122
S+KLS +A
Sbjct: 111 ASGSFKLSASA 121
>sp|Q94555|H12_DROVI Histone H1.2 OS=Drosophila virilis GN=His1.2 PE=3 SV=1
Length = 250
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
PSHPP QM+ ++ L+++ GSS AI KY+ +K + + LK+ A G
Sbjct: 43 PSHPPTQQMVDASIKNLKERGGSSLLAIKKYIGATYKCDA-QKLAPFIKKYLKNAVANGK 101
Query: 109 LIKIR-----ASYKLSEAAAGKTKKEIKTKAKAP-RKTRSVTAAA 147
LI+ + S+KLS +A KK+ K KA A +KT+ V A+A
Sbjct: 102 LIQTKGKGASGSFKLSRSA----KKDPKPKASAVEKKTKKVNASA 142
>sp|P06144|H1_LYTPI Late histone H1 OS=Lytechinus pictus PE=3 SV=1
Length = 210
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELP--ANFRKILAVQLKHFAAKGN 108
HPP QM+ A+ AL+++ GSS AI KY+ +K ++ A F K LK A G
Sbjct: 18 HPPTSQMVVAAITALKERGGSSNQAIKKYIAANYKVDINKQATFIK---RALKAGVANGT 74
Query: 109 LIKIRA-----SYKLSEAAAGKT 126
L++++ S+KL + AGKT
Sbjct: 75 LVQVKGKGASGSFKLGKVKAGKT 97
>sp|Q19743|H13_CAEEL Histone H1.3 OS=Caenorhabditis elegans GN=hil-3 PE=2 SV=3
Length = 208
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 33 KKPKAPKEKK-PKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK--DEL 88
K PKA K K PK K +HPPY M+T A+ L+++ GSS AI KY+ + + D++
Sbjct: 19 KSPKAAKTTKVPKAKKPVAHPPYINMVTAAINGLKERKGSSKIAILKYITKNYNVGDQI 77
>sp|O01833|H15_CAEEL Histone H1.5 OS=Caenorhabditis elegans GN=hil-5 PE=2 SV=3
Length = 225
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 43 PKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH 84
PK +HPP+ MITEA+ L+D+ GSS AI K++ K+
Sbjct: 30 PKVKVVAAHPPFINMITEAVSNLKDRKGSSRVAIFKFITAKY 71
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASY 116
+I EA+ L++ G + I Y+E+++ P +F+++L+ +LK+ + G L+K++ Y
Sbjct: 124 LIMEAIATLKEPGGCNKTTIGAYIEDQY--HAPPDFKRLLSTKLKYLTSCGKLVKVKRKY 181
Query: 117 KL 118
++
Sbjct: 182 RI 183
>sp|P40278|H1E_CHITE Histone H1E OS=Chironomus tentans PE=3 SV=1
Length = 237
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
P+HPP +M+ A+ L+++ GSS AI K++ ++K ++ + LK AKG
Sbjct: 49 PTHPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYKVDV-EKLVPFIKKFLKASVAKGT 107
Query: 109 LIKIR-----ASYKLSEAA 122
L++ + S+KL AA
Sbjct: 108 LLQAKGKGASGSFKLPPAA 126
>sp|P22845|H10A_XENLA Histone H1.0-A OS=Xenopus laevis GN=h1f0-a PE=2 SV=3
Length = 194
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Query: 22 VTEKKAKAAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYME 81
+TE A AAK ++ KA K K+ HP Y MI +A+ A + +SGSS +I KY++
Sbjct: 1 MTENSAPAAKPRRSKASK-------KSTDHPKYSDMILDAVQAEKSRSGSSRQSIQKYIK 53
Query: 82 EKHKDELPANFRKILAVQLKHFAAKGNL-----IKIRASYKLSEA 121
+ + N + + +K G L + S++L++A
Sbjct: 54 NNY--TVGENADSQIKLSIKRLVTSGTLKQTKGVGASGSFRLAKA 96
>sp|Q8J0U2|H1_NEUCR Histone H1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=hh1 PE=3 SV=1
Length = 236
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 45 QSKTPS-HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK-DELPAN-FRKILAVQLK 101
++K+PS H Y MIT+A++AL+D++GSS A+ KY+ + + N F + LK
Sbjct: 30 KTKSPSTHASYLDMITDAIVALKDRAGSSRQALKKYVRANNTLGNVTDNMFDSLFNKALK 89
Query: 102 HFAAKG 107
+ KG
Sbjct: 90 NGVDKG 95
>sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2
Length = 190
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 47 KTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAK 106
++ SHP Y +MI A+ A + + GSS +I KY++ +K A+ + + + ++ A
Sbjct: 22 RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQ--IKLSIRRLLAA 79
Query: 107 GNL-----IKIRASYKLSEA-----AAGKTKKEIKT-----KAKAPRKTRS 142
G L + S++L+++ + GK KK ++ KA PRK RS
Sbjct: 80 GVLKQTKGVGASGSFRLAKSDKAKRSPGKKKKAVRRSTSPKKAARPRKARS 130
>sp|P15869|H1B_STRPU Histone H1-beta, late embryonic OS=Strongylocentrotus purpuratus
PE=3 SV=1
Length = 211
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 16/88 (18%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDEL--PANFRK---ILAVQLKHF 103
P+HP +M+ A+ AL+++ GSS AI KY+E+ + ++ A F K I V+
Sbjct: 16 PAHPSSSEMVLAAITALKERGGSSAQAIRKYIEKNYTVDIKKQAIFIKRALITGVE---- 71
Query: 104 AAKGNLIKIR-----ASYKLSEAAAGKT 126
KG L++++ S+KL + GK+
Sbjct: 72 --KGTLVQVKGKGASGSFKLGKKKEGKS 97
>sp|P19375|H1E_STRPU Histone H1, early embryonic OS=Strongylocentrotus purpuratus PE=2
SV=1
Length = 205
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQ--LKHFAAKGN 108
HPP +M+ A+ L+D++GSS AI KY+ ++ R++L ++ LK KG
Sbjct: 18 HPPAAEMVATAITELKDRNGSSLQAIKKYIATNFDVQMD---RQLLFIKRALKSGVEKGK 74
Query: 109 LIKIR-----ASYKLSEAAA 123
L++ + S+K++ AA
Sbjct: 75 LVQTKGKGASGSFKVNVQAA 94
>sp|Q07134|H1O_CHITH Histone H1, orphon OS=Chironomus thummi thummi PE=3 SV=1
Length = 244
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
P+HPP +M+ A+ L+++ GSS AI K++ ++K ++ + LK AKG
Sbjct: 52 PTHPPVSEMVVNAVTTLKERGGSSLIAIKKFVAAQYKVDV-EKLVPFIKKFLKSSVAKGT 110
Query: 109 LIKIR-----ASYKLSEAA 122
L++ + S+KL AA
Sbjct: 111 LLQAKGKGASGSFKLPPAA 129
>sp|P10771|H11_CAEEL Histone H1.1 OS=Caenorhabditis elegans GN=his-24 PE=1 SV=4
Length = 208
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKI 95
+HPPY MI EA+ L+D+ G+S AI K++ + +K L N +I
Sbjct: 37 AHPPYINMIKEAIKQLKDRKGASKQAILKFISQNYK--LGDNVIQI 80
>sp|P40262|H1E_CHIPA Histone H1E OS=Chironomus pallidivittatus PE=3 SV=1
Length = 235
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK---DELPANFRKILAVQLKHFAA 105
P+HPP +M+ A+ L+++ GSS AI K++ ++K ++L +K LK A
Sbjct: 49 PTHPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKF----LKASVA 104
Query: 106 KGNLIKIR-----ASYKLSEAA 122
KG L++ + S+KL AA
Sbjct: 105 KGTLLQAKGKGASGSFKLPPAA 126
>sp|P07796|H1G_STRPU Histone H1-gamma, late OS=Strongylocentrotus purpuratus PE=3 SV=1
Length = 217
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGN 108
P+HPP QM+ A+ AL+++ GSS AI KY+ + ++ I +K A+ G
Sbjct: 16 PAHPPSSQMVVAAVTALKERGGSSTQAIKKYIAANYTVDMTKQGPFIRRALVKGVAS-GA 74
Query: 109 LIKIRA-----SYKLSEAAAGKT 126
L++ + S+KL + GK+
Sbjct: 75 LVQTKGKGASGSFKLGKKKEGKS 97
>sp|P21895|H1_CHITH Histone H1 OS=Chironomus thummi thummi PE=3 SV=1
Length = 231
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHK---DELPANFRKILAVQLKHFAAK 106
+HPP MI A+ L+++ GSS AI K++ ++K D+L +K LK K
Sbjct: 38 THPPVSDMIVNAIKTLKERGGSSVQAIKKFLVAQYKVDTDKLSPFIKK----YLKSAVEK 93
Query: 107 GNLIKIR-----ASYKLSEAA 122
G L++ + S+KL AA
Sbjct: 94 GQLLQTKGKGASGSFKLPAAA 114
>sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A OS=Glycine max PE=2 SV=1
Length = 176
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNL 109
S PPY +MI + L AL + +GS+ AI+KY+E + ELP +L L G L
Sbjct: 11 SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTY-GELPD--ATVLGSHLNKMKDSGEL 67
>sp|P15308|B4_XENLA Protein B4 OS=Xenopus laevis GN=b4 PE=1 SV=1
Length = 273
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 39 KEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAV 98
K K K KT SHPP M+ E L ++ G+S AI + H P + +L
Sbjct: 29 KRKSIKLVKTQSHPPTLSMVVEVLKKNTERKGTSVQAIRTRILSAHPTVDPLRLKFLLRT 88
Query: 99 QLKHFAAKGNLIK 111
L KG LI+
Sbjct: 89 ALNKGLEKGILIR 101
>sp|P02257|H1_ECHCR Histone H1, gonadal (Fragment) OS=Echinolampas crassa PE=1 SV=1
Length = 171
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 46 SKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPA---NFRKILAVQLKH 102
+++ +HPP MIT A+ A +++ GSS I Y+ K++ ++ A + R+ L Q+K
Sbjct: 33 ARSAAHPPVIDMITAAIAAQKERRGSSVAKIQSYIAAKYRCDINALNPHIRRALKNQVKS 92
Query: 103 FAAK 106
A K
Sbjct: 93 GALK 96
>sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1
Length = 213
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEE--KHKDELPANFRKIL 96
HP Y +M+T+A+ L++++GSS AI K+++ K KD F + L
Sbjct: 27 HPSYKEMLTKAITELKERNGSSRQAIKKFIQSNFKVKDNFDVQFNQAL 74
>sp|P06513|H5_CAIMO Histone H5 OS=Cairina moschata PE=2 SV=2
Length = 194
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 17/82 (20%)
Query: 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEE-----KHKD-ELPANFRKILAV----Q 99
SHP Y +MI A+ A + + GSS +I KY++ +H D ++ + R++LA Q
Sbjct: 26 SHPSYSEMIVAAIRAEKSRGGSSRQSIQKYVKSHYKVGQHADLQIKLSIRRLLAAGVLKQ 85
Query: 100 LKHFAAKGNLIKIRASYKLSEA 121
K A G SY+L++
Sbjct: 86 TKGVGASG-------SYRLAKG 100
>sp|P22844|H10B_XENLA Histone H1.0-B OS=Xenopus laevis GN=h1f0-b PE=1 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 42 KPKQSK----TPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILA 97
KPK+SK + HP Y MI A+ A + +SGSS +I KY++ +K + N +
Sbjct: 12 KPKRSKALKKSTDHPKYSDMILAAVQAEKSRSGSSRQSIQKYIKNHYK--VGENADSQIK 69
Query: 98 VQLKHFAAKGNL-----IKIRASYKLSEAAAG 124
+ +K G L + S++L++A G
Sbjct: 70 LSIKRLVTSGALKQTKGVGASGSFRLAKADEG 101
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 25/121 (20%)
Query: 52 PPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIK 111
P Y MI EAL L D +GS AI ++E++ E+P NFR++L+ +L+ AA+G L K
Sbjct: 128 PRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQ--EVPPNFRRMLSSRLRRLAAQGKLEK 185
Query: 112 I------RASYKLSEAAA------------GKTKKEIKTKAKAPRKTR-----SVTAAAK 148
+ + YK+++ + TK +T ++ P ++ S+TAA K
Sbjct: 186 VSHLKSTQNFYKMNDNSLVQRTPHVARPKESNTKSRQQTNSQGPSISQQIVEASITAAYK 245
Query: 149 I 149
+
Sbjct: 246 L 246
>sp|Q3HNG7|H1FOO_BOVIN Histone H1oo OS=Bos taurus GN=H1FOO PE=1 SV=1
Length = 343
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLI 110
HPP +M+ EAL A + + G+S AI Y+ +K+ +L L +G LI
Sbjct: 53 HPPVLRMVLEALQAGERRRGTSVAAIKVYILQKYPTVDALRLNHLLKQALATGLHRGLLI 112
Query: 111 K--------IRASYKLSEAAAGKTKKEIKTKAKAPR 138
+ S+KL K K++I + APR
Sbjct: 113 RPVNSKAKGATGSFKLVP----KDKRKIPPRKTAPR 144
>sp|P06895|H1B_PLADU Histone H1B, sperm OS=Platynereis dumerilii PE=1 SV=1
Length = 119
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 44 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHF 103
++ + +HPP + A++ L+D+ GSS AI KY+ + ++ L ++ F
Sbjct: 2 RRKRAATHPPVATAVVAAILGLKDRKGSSMVAIKKYLAANYNVDVAR-----LGPFIRRF 56
Query: 104 ----AAKGNLIKIRASYKLS 119
A+G L++ + S++++
Sbjct: 57 VRKAVAEGMLVQNKGSFRVN 76
>sp|P10922|H10_MOUSE Histone H1.0 OS=Mus musculus GN=H1f0 PE=2 SV=4
Length = 194
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 29 AAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDEL 88
AAK K+ KA K K+ HP Y MI A+ A ++++GSS +I KY++ +K +
Sbjct: 10 AAKPKRAKASK-------KSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYK--V 60
Query: 89 PANFRKILAVQLKHFAAKGNL 109
N + + +K G L
Sbjct: 61 GENADSQIKLSIKRLVTTGVL 81
>sp|Q6NVM0|H10_XENTR Histone H1.0 OS=Xenopus tropicalis GN=h1f0 PE=2 SV=1
Length = 196
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 22 VTEKKAK--AAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKY 79
+TE A A K K+ KA K K HP Y MI A+ A + +SGSS +I KY
Sbjct: 1 MTENSAAAPAGKPKRSKASK-------KATDHPKYSDMILAAVQAEKSRSGSSRQSIQKY 53
Query: 80 MEEKHKDELPANFRKILAVQLKHFAAKGNL-----IKIRASYKLSEAAAG 124
++ +K + N + + +K G L + S++L++A G
Sbjct: 54 IKNHYK--VGENADSQIKLSIKRLVTSGTLKQTKGVGASGSFRLAKADEG 101
>sp|P07305|H10_HUMAN Histone H1.0 OS=Homo sapiens GN=H1F0 PE=1 SV=3
Length = 194
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 29 AAKEKKPKAPKEKKPKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDEL 88
AAK K+ KA K K+ HP Y MI A+ A ++++GSS +I KY++ +K +
Sbjct: 10 AAKPKRAKASK-------KSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYK--V 60
Query: 89 PANFRKILAVQLKHFAAKGNL 109
N + + +K G L
Sbjct: 61 GENADSQIKLSIKRLVTTGVL 81
>sp|P06894|H1A_PLADU Histone H1A, sperm OS=Platynereis dumerilii PE=1 SV=1
Length = 121
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDEL 88
HPP M+ A++ L+++ GSS AI KY+ ++ ++
Sbjct: 11 HPPVATMVVTAILGLKERKGSSMVAIKKYIAANYRVDV 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.116 0.303
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,858,396
Number of Sequences: 539616
Number of extensions: 2483624
Number of successful extensions: 31471
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 866
Number of HSP's that attempted gapping in prelim test: 22013
Number of HSP's gapped (non-prelim): 6181
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)