Query 029524
Match_columns 192
No_of_seqs 131 out of 625
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 23:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uss_A Histone H1; DNA binding 99.9 1.7E-26 5.9E-31 171.5 9.7 79 47-125 3-86 (88)
2 1uhm_A Histone H1, histone HHO 99.9 7.5E-26 2.6E-30 164.2 8.4 72 49-120 2-77 (78)
3 1hst_A Histone H5; chromosomal 99.9 2.4E-25 8.3E-30 166.3 8.4 76 46-123 2-82 (90)
4 1ust_A Histone H1; DNA binding 99.9 9.6E-26 3.3E-30 169.4 6.1 76 47-122 3-82 (93)
5 2rqp_A Heterochromatin protein 99.9 5.5E-26 1.9E-30 168.2 3.0 78 47-124 5-87 (88)
6 1ghc_A GH1; chromosomal protei 99.8 5.2E-23 1.8E-27 147.3 0.0 70 49-120 1-75 (75)
7 2lso_A Histone H1X; structural 99.7 4E-22 1.4E-26 146.8 0.0 69 52-121 6-79 (83)
8 2a07_F Forkhead box protein P2 95.0 0.054 1.9E-06 40.3 6.0 58 51-112 5-64 (93)
9 1vtn_C HNF-3/FORK head DNA-rec 94.1 0.099 3.4E-06 39.4 5.8 58 51-112 5-64 (102)
10 2c6y_A Forkhead box protein K2 94.1 0.14 5E-06 39.1 6.7 59 50-112 17-77 (111)
11 3bpy_A FORK head domain, forkh 93.1 0.11 3.7E-06 37.9 4.3 59 51-113 7-72 (85)
12 2hfh_A Genesis, HFH-2; HNF-3 h 93.0 0.12 4E-06 39.6 4.6 58 51-112 5-64 (109)
13 2hdc_A Protein (transcription 92.9 0.085 2.9E-06 39.4 3.6 58 51-112 4-63 (97)
14 3coa_C Forkhead box protein O1 92.8 0.21 7.3E-06 38.5 5.9 60 50-113 12-78 (117)
15 1kq8_A HFH-1, hepatocyte nucle 92.5 0.1 3.5E-06 39.2 3.6 58 51-112 4-63 (100)
16 3l2c_A Forkhead box protein O4 92.4 0.14 4.7E-06 39.1 4.3 60 50-113 25-91 (110)
17 1e17_A AFX; DNA binding domain 90.8 0.21 7.2E-06 40.2 3.9 60 50-113 41-107 (150)
18 3g73_A Forkhead box protein M1 89.8 0.48 1.6E-05 37.7 5.2 59 50-112 19-80 (142)
19 3fbl_A Putative uncharacterize 84.4 1.1 3.6E-05 32.2 3.9 29 56-84 51-82 (82)
20 1r7j_A Conserved hypothetical 84.2 1.5 5.3E-05 31.5 4.8 62 52-124 4-65 (95)
21 2v9v_A Selenocysteine-specific 79.9 4.6 0.00016 29.5 6.2 59 54-119 64-129 (135)
22 1qgp_A Protein (double strande 78.1 6.8 0.00023 27.1 6.2 59 54-121 15-76 (77)
23 2kzv_A Uncharacterized protein 74.9 4.2 0.00014 29.8 4.6 40 53-92 8-48 (92)
24 1tbx_A ORF F-93, hypothetical 74.7 9.3 0.00032 26.2 6.2 55 64-123 16-74 (99)
25 1qbj_A Protein (double-strande 71.3 20 0.00069 25.2 7.4 59 55-122 12-73 (81)
26 1sfu_A 34L protein; protein/Z- 70.9 7.3 0.00025 27.9 4.9 52 54-114 13-64 (75)
27 1y0u_A Arsenical resistance op 70.3 13 0.00044 25.6 6.1 31 93-123 57-87 (96)
28 2heo_A Z-DNA binding protein 1 68.6 17 0.00059 24.1 6.2 55 54-119 11-66 (67)
29 2fu4_A Ferric uptake regulatio 68.3 15 0.00051 24.5 5.9 54 55-113 19-72 (83)
30 1p6r_A Penicillinase repressor 64.0 27 0.00094 23.2 6.6 52 54-113 10-61 (82)
31 1q1v_A DEK protein; winged-hel 63.6 23 0.00079 24.6 6.2 54 51-105 10-67 (70)
32 2kpm_A Uncharacterized protein 63.5 8.8 0.0003 28.9 4.3 40 53-92 21-61 (105)
33 2x4h_A Hypothetical protein SS 62.6 32 0.0011 24.6 7.2 60 56-124 16-76 (139)
34 1ldd_A APC2WHB, anaphase promo 62.5 6.4 0.00022 28.0 3.2 27 93-119 47-74 (74)
35 3cuo_A Uncharacterized HTH-typ 60.3 25 0.00085 23.5 5.9 48 66-122 34-85 (99)
36 1uxc_A FRUR (1-57), fructose r 59.9 5.6 0.00019 26.8 2.4 42 62-103 3-45 (65)
37 3jth_A Transcription activator 57.2 28 0.00095 23.7 5.8 48 65-122 32-83 (98)
38 1xn7_A Hypothetical protein YH 51.9 21 0.00073 24.9 4.5 20 93-112 30-49 (78)
39 1lva_A Selenocysteine-specific 51.4 30 0.001 28.5 6.1 60 54-120 64-130 (258)
40 1oyi_A Double-stranded RNA-bin 49.8 40 0.0014 24.1 5.7 55 56-120 17-74 (82)
41 2fe3_A Peroxide operon regulat 49.4 62 0.0021 24.2 7.1 61 53-119 22-87 (145)
42 2hin_A GP39, repressor protein 49.3 18 0.00062 25.0 3.7 32 62-96 13-44 (71)
43 3hrs_A Metalloregulator SCAR; 47.7 62 0.0021 25.7 7.2 61 55-124 4-66 (214)
44 2o03_A Probable zinc uptake re 47.6 65 0.0022 23.6 6.8 53 55-113 13-65 (131)
45 2xig_A Ferric uptake regulatio 46.8 78 0.0027 23.8 7.4 60 54-119 28-92 (150)
46 2l8n_A Transcriptional repress 46.3 8.6 0.00029 26.0 1.6 40 62-103 12-51 (67)
47 1mkm_A ICLR transcriptional re 46.1 54 0.0018 26.4 6.7 54 58-122 13-67 (249)
48 4esj_A Type-2 restriction enzy 45.7 28 0.00095 30.2 5.0 62 54-117 191-255 (257)
49 1okr_A MECI, methicillin resis 45.3 56 0.0019 22.7 6.0 51 55-113 12-62 (123)
50 1sd4_A Penicillinase repressor 44.5 35 0.0012 24.0 4.7 49 57-113 14-62 (126)
51 3mwm_A ZUR, putative metal upt 43.6 52 0.0018 24.5 5.8 60 55-120 16-80 (139)
52 2jt1_A PEFI protein; solution 43.3 35 0.0012 23.7 4.5 21 94-114 39-59 (77)
53 3eyy_A Putative iron uptake re 42.8 74 0.0025 23.8 6.6 60 53-119 19-83 (145)
54 2klq_A CBD, P105MCM, DNA repli 42.3 1E+02 0.0035 22.9 7.4 68 47-114 6-85 (114)
55 3aaf_A Werner syndrome ATP-dep 42.0 20 0.00068 27.3 3.2 68 54-123 17-103 (134)
56 2g7u_A Transcriptional regulat 41.4 81 0.0028 25.5 7.1 54 60-122 18-72 (257)
57 1mzb_A Ferric uptake regulatio 41.4 85 0.0029 23.1 6.7 62 53-119 18-84 (136)
58 2f2e_A PA1607; transcription f 40.5 82 0.0028 23.5 6.5 59 53-124 24-88 (146)
59 1o7d_A Lysosomal alpha-mannosi 40.5 39 0.0013 29.0 5.2 56 55-119 49-109 (298)
60 2o3f_A Putative HTH-type trans 39.5 16 0.00054 26.7 2.2 47 55-102 35-81 (111)
61 2xrn_A HTH-type transcriptiona 39.1 59 0.002 26.2 5.9 54 58-122 11-66 (241)
62 2w57_A Ferric uptake regulatio 38.2 72 0.0025 24.1 5.9 61 53-118 17-82 (150)
63 2dk5_A DNA-directed RNA polyme 36.9 1.1E+02 0.0038 21.6 6.6 56 49-114 16-71 (91)
64 2ia2_A Putative transcriptiona 36.9 79 0.0027 25.8 6.4 56 60-124 25-81 (265)
65 2g9w_A Conserved hypothetical 36.3 64 0.0022 23.5 5.2 52 55-113 11-62 (138)
66 4ad9_A Lactb2, beta-lactamase- 35.4 1.1E+02 0.0039 24.3 7.0 45 69-113 235-279 (289)
67 2co5_A Viral protein F93; vira 35.2 57 0.0019 23.5 4.7 64 57-124 12-79 (99)
68 3iwz_A CAP-like, catabolite ac 35.1 1.2E+02 0.0041 22.7 6.8 28 93-120 201-228 (230)
69 2zcw_A TTHA1359, transcription 34.8 1.2E+02 0.0043 22.4 6.8 29 93-121 160-188 (202)
70 2y75_A HTH-type transcriptiona 34.1 1.3E+02 0.0044 21.5 7.8 46 70-124 26-74 (129)
71 1on2_A Transcriptional regulat 33.2 71 0.0024 22.9 5.0 59 57-124 8-68 (142)
72 3f8b_A Transcriptional regulat 32.8 1.4E+02 0.0047 21.5 7.1 54 70-124 25-87 (116)
73 2i6e_A Hypothetical protein; N 32.7 57 0.0019 27.3 4.9 50 60-111 236-285 (301)
74 3tdu_C Cullin-1, CUL-1; E2:E3, 32.5 51 0.0017 23.1 3.9 22 93-114 47-68 (77)
75 1xd7_A YWNA; structural genomi 32.3 1.1E+02 0.0039 22.6 6.1 61 55-124 8-70 (145)
76 2fbh_A Transcriptional regulat 32.0 1.3E+02 0.0044 20.9 6.3 31 93-123 66-103 (146)
77 4ham_A LMO2241 protein; struct 31.8 73 0.0025 23.3 4.9 61 51-117 13-78 (134)
78 2k02_A Ferrous iron transport 31.7 32 0.0011 24.7 2.8 21 93-113 30-50 (87)
79 3b02_A Transcriptional regulat 31.2 94 0.0032 23.0 5.5 29 93-121 153-181 (195)
80 4dyq_A Gene 1 protein; GP1, oc 31.1 1.6E+02 0.0056 21.9 7.1 35 49-83 12-53 (140)
81 2dk8_A DNA-directed RNA polyme 30.9 60 0.0021 23.2 4.1 56 58-121 15-76 (81)
82 3hsr_A HTH-type transcriptiona 30.9 1E+02 0.0035 21.8 5.5 54 62-124 42-102 (140)
83 2lnb_A Z-DNA-binding protein 1 30.6 1.5E+02 0.0052 21.4 6.5 54 55-119 21-75 (80)
84 3omt_A Uncharacterized protein 30.4 32 0.0011 21.9 2.4 24 62-85 24-47 (73)
85 2oz6_A Virulence factor regula 30.0 1.6E+02 0.0056 21.5 6.8 27 93-119 178-204 (207)
86 4ets_A Ferric uptake regulatio 29.8 1.5E+02 0.005 22.7 6.5 60 54-119 34-100 (162)
87 2qen_A Walker-type ATPase; unk 29.6 1.9E+02 0.0066 22.9 7.4 47 71-121 296-342 (350)
88 2iie_A Integration HOST factor 29.5 1.7E+02 0.0058 23.6 7.1 67 55-122 28-102 (204)
89 1zyb_A Transcription regulator 29.5 1.9E+02 0.0064 22.0 7.3 28 93-120 200-227 (232)
90 2o97_B NS1, HU-1, DNA-binding 29.4 85 0.0029 21.7 4.7 43 67-122 12-56 (90)
91 3mq0_A Transcriptional repress 28.6 85 0.0029 25.9 5.3 54 58-122 35-89 (275)
92 4hbl_A Transcriptional regulat 28.3 70 0.0024 23.0 4.2 47 69-124 54-107 (149)
93 2k4b_A Transcriptional regulat 28.0 49 0.0017 23.8 3.2 49 57-113 39-87 (99)
94 1sfx_A Conserved hypothetical 27.7 88 0.003 20.6 4.4 35 70-113 34-68 (109)
95 3g3z_A NMB1585, transcriptiona 27.7 87 0.003 22.1 4.6 32 93-124 59-97 (145)
96 3by6_A Predicted transcription 27.3 89 0.0031 22.9 4.7 51 58-114 20-70 (126)
97 3pqk_A Biofilm growth-associat 27.2 1.5E+02 0.0051 20.1 5.8 27 95-121 52-82 (102)
98 3ryp_A Catabolite gene activat 27.1 1.9E+02 0.0064 21.2 6.8 27 93-119 181-207 (210)
99 1yg2_A Gene activator APHA; vi 26.8 1.6E+02 0.0054 22.5 6.2 64 56-124 5-77 (179)
100 3bpv_A Transcriptional regulat 26.7 1.2E+02 0.004 21.0 5.1 46 69-123 42-94 (138)
101 1mul_A NS2, HU-2, DNA binding 26.7 78 0.0027 21.8 4.1 27 96-122 28-56 (90)
102 2hr3_A Probable transcriptiona 26.4 94 0.0032 21.8 4.6 47 68-123 48-101 (147)
103 1ylf_A RRF2 family protein; st 26.2 89 0.003 23.3 4.6 41 79-124 35-77 (149)
104 3kz3_A Repressor protein CI; f 26.0 42 0.0014 21.9 2.4 23 63-85 29-51 (80)
105 2oqg_A Possible transcriptiona 25.9 71 0.0024 21.9 3.7 30 93-122 48-81 (114)
106 1ub9_A Hypothetical protein PH 25.7 53 0.0018 21.8 2.9 45 70-123 30-81 (100)
107 3o2p_E Cell division control p 25.2 79 0.0027 22.7 3.9 22 93-114 59-80 (88)
108 1u2w_A CADC repressor, cadmium 25.2 1.2E+02 0.004 21.8 4.9 30 93-122 70-103 (122)
109 2np2_A HBB; protein-DNA comple 25.1 1.7E+02 0.0058 21.0 5.8 43 67-122 25-69 (108)
110 2key_A Putative phage integras 24.9 1.2E+02 0.004 20.2 4.6 40 71-110 52-96 (112)
111 3cdh_A Transcriptional regulat 24.6 1.7E+02 0.0057 20.8 5.7 49 66-123 53-108 (155)
112 1jko_C HIN recombinase, DNA-in 24.6 21 0.00073 20.8 0.6 19 64-82 26-44 (52)
113 2nxo_A Hypothetical protein SC 24.2 1E+02 0.0035 24.8 4.9 48 63-111 227-274 (291)
114 1ft9_A Carbon monoxide oxidati 24.2 1.8E+02 0.0063 21.8 6.1 27 93-119 177-204 (222)
115 3ihu_A Transcriptional regulat 24.1 1.4E+02 0.0048 23.2 5.6 51 57-114 24-74 (222)
116 3edp_A LIN2111 protein; APC883 23.7 1.6E+02 0.0055 23.6 6.0 63 51-119 8-75 (236)
117 1iuy_A Cullin-3 homologue; win 23.6 93 0.0032 22.5 4.0 57 57-114 26-83 (92)
118 3t8r_A Staphylococcus aureus C 23.3 1.3E+02 0.0045 22.4 5.1 45 71-124 29-76 (143)
119 1xma_A Predicted transcription 23.1 2.3E+02 0.0078 21.3 6.4 68 52-124 40-116 (145)
120 2kko_A Possible transcriptiona 23.1 1.8E+02 0.006 20.3 5.4 30 93-122 52-85 (108)
121 1z7u_A Hypothetical protein EF 22.8 1.6E+02 0.0056 20.6 5.2 58 54-123 23-87 (112)
122 3deu_A Transcriptional regulat 22.4 1.4E+02 0.0049 22.0 5.1 32 93-124 82-120 (166)
123 3oop_A LIN2960 protein; protei 22.4 92 0.0031 21.9 3.8 31 93-123 65-102 (143)
124 3boq_A Transcriptional regulat 22.2 67 0.0023 23.1 3.1 29 95-123 78-113 (160)
125 3f8m_A GNTR-family protein tra 22.0 83 0.0028 25.6 3.9 26 93-119 50-77 (248)
126 1b8z_A Protein (histonelike pr 21.8 83 0.0029 21.6 3.4 27 96-122 28-56 (90)
127 1fx7_A Iron-dependent represso 21.8 1.2E+02 0.004 24.1 4.7 62 53-124 6-70 (230)
128 2p8t_A Hypothetical protein PH 21.8 2.2E+02 0.0076 23.3 6.5 58 56-124 18-75 (200)
129 3b73_A PHIH1 repressor-like pr 21.7 79 0.0027 23.3 3.4 60 54-123 14-74 (111)
130 1lj9_A Transcriptional regulat 21.4 1.4E+02 0.0046 20.9 4.6 36 69-113 42-77 (144)
131 2h09_A Transcriptional regulat 21.3 1.3E+02 0.0046 21.7 4.6 46 69-123 53-99 (155)
132 1owf_A IHF-alpha, integration 21.2 84 0.0029 22.2 3.4 26 96-121 30-57 (99)
133 2pg4_A Uncharacterized protein 21.2 1.2E+02 0.004 20.4 4.0 44 59-111 18-63 (95)
134 3rhi_A DNA-binding protein HU; 21.0 69 0.0024 22.5 2.8 26 96-121 31-58 (93)
135 3bj6_A Transcriptional regulat 20.9 1.5E+02 0.0052 20.8 4.8 45 70-123 54-105 (152)
136 1s3j_A YUSO protein; structura 20.7 91 0.0031 22.1 3.5 45 70-123 51-102 (155)
137 2qww_A Transcriptional regulat 20.6 1.4E+02 0.0048 21.1 4.6 34 69-111 54-87 (154)
138 3k0l_A Repressor protein; heli 20.5 82 0.0028 22.9 3.3 29 95-123 76-111 (162)
139 3nrv_A Putative transcriptiona 20.2 1.6E+02 0.0056 20.6 4.8 45 70-123 54-105 (148)
140 1p71_A DNA-binding protein HU; 20.1 92 0.0031 21.7 3.4 27 96-122 28-56 (94)
141 3euh_A Protein KICB, chromosom 20.1 1.2E+02 0.0043 28.0 5.0 69 52-121 25-106 (440)
142 3l7w_A Putative uncharacterize 20.1 1.2E+02 0.0042 21.3 4.1 59 57-124 13-79 (108)
143 2bv6_A MGRA, HTH-type transcri 20.0 56 0.0019 23.0 2.2 35 70-113 51-85 (142)
No 1
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.93 E-value=1.7e-26 Score=171.47 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=73.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEecCC---ceecCcc
Q 029524 47 KTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKIRA---SYKLSEA 121 (192)
Q Consensus 47 k~~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqvKG---SFKLs~~ 121 (192)
++++||+|.+||.|||.+|+||+|||+++|.+||+++|++ +++.+|+.+|+.+|++||++|.|+|++| ||+|+..
T Consensus 3 ~~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k 82 (88)
T 1uss_A 3 SSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKK 82 (88)
T ss_dssp TCCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCS
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCcc
Confidence 4568999999999999999999999999999999999986 4578999999999999999999999998 9999987
Q ss_pred cccc
Q 029524 122 AAGK 125 (192)
Q Consensus 122 ~Kk~ 125 (192)
.++.
T Consensus 83 ~~~~ 86 (88)
T 1uss_A 83 KVKL 86 (88)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7553
No 2
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.93 E-value=7.5e-26 Score=164.22 Aligned_cols=72 Identities=26% Similarity=0.372 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHHHHhcCceEecC---CceecCc
Q 029524 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELP-ANFRKILAVQLKHFAAKGNLIKIR---ASYKLSE 120 (192)
Q Consensus 49 ~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp-~nf~~lLk~aLKk~Ve~G~LVqvK---GSFKLs~ 120 (192)
++||+|.+||.|||.+|+||+|||+++|++||+++|+++++ .+|+.+|+.+|++||++|.|+|++ |||+|+.
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 58999999999999999999999999999999999996555 799999999999999999999976 5999985
No 3
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.92 E-value=2.4e-25 Score=166.29 Aligned_cols=76 Identities=28% Similarity=0.466 Sum_probs=65.9
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-----ceecCc
Q 029524 46 SKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-----SYKLSE 120 (192)
Q Consensus 46 ~k~~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-----SFKLs~ 120 (192)
.++++||+|.+||.|||.+|+||+|||+++|.+||+++|++ +++|+.+|+.+|++||++|.|+|++| ||+|+.
T Consensus 2 k~~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~--~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~ 79 (90)
T 1hst_A 2 RRSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKV--GHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAK 79 (90)
T ss_dssp ----CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCC--CTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccC--chhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCC
Confidence 34568999999999999999999999999999999999984 35699999999999999999999997 999997
Q ss_pred ccc
Q 029524 121 AAA 123 (192)
Q Consensus 121 ~~K 123 (192)
..+
T Consensus 80 ~~k 82 (90)
T 1hst_A 80 SDK 82 (90)
T ss_dssp ---
T ss_pred CcC
Confidence 653
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.92 E-value=9.6e-26 Score=169.36 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCc-hhHHHHHHHHHHHHHhcCceEecC---CceecCccc
Q 029524 47 KTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELP-ANFRKILAVQLKHFAAKGNLIKIR---ASYKLSEAA 122 (192)
Q Consensus 47 k~~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp-~nf~~lLk~aLKk~Ve~G~LVqvK---GSFKLs~~~ 122 (192)
++.+||+|.+||.|||.+|+||+|||+++|.+||+++|+++++ .+|+.+|+.+|++||++|.|+|++ |||+|+...
T Consensus 3 k~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k~ 82 (93)
T 1ust_A 3 EEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKK 82 (93)
T ss_dssp CSSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSCC
T ss_pred CCCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCCC
Confidence 5668999999999999999999999999999999999985444 789999999999999999999976 699999765
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.91 E-value=5.5e-26 Score=168.22 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=71.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-----ceecCcc
Q 029524 47 KTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-----SYKLSEA 121 (192)
Q Consensus 47 k~~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-----SFKLs~~ 121 (192)
++.+||+|.+||.|||.+|+||+|||+++|.+||+++|+..++++|+.+|+.+|++||++|.|+|++| ||+|+..
T Consensus 5 ~~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 5 ASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 45699999999999999999999999999999999999843457899999999999999999999997 9999988
Q ss_pred ccc
Q 029524 122 AAG 124 (192)
Q Consensus 122 ~Kk 124 (192)
.++
T Consensus 85 ~kk 87 (88)
T 2rqp_A 85 SRK 87 (88)
T ss_dssp TCC
T ss_pred ccC
Confidence 765
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.85 E-value=5.2e-23 Score=147.34 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-----ceecCc
Q 029524 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-----SYKLSE 120 (192)
Q Consensus 49 ~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-----SFKLs~ 120 (192)
++||+|.+||.|||.+|+||+|||+++|.+||+++|.. + .+++.+|+.+|++||++|.|+|++| ||+|+.
T Consensus 1 ~~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~-~-~~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~~ 75 (75)
T 1ghc_A 1 MAGPSVTELITKAVSASKERKGLSLAALKKALAAGGYD-V-EKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLSK 75 (75)
T ss_dssp CCSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCC-S-SSSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSCC
T ss_pred CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCC-c-hhHHHHHHHHHHHHHhcCCeEeccCCCCccccccCC
Confidence 37999999999999999999999999999999999442 3 3568899999999999999999997 999973
No 7
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.72 E-value=4e-22 Score=146.82 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-----ceecCcc
Q 029524 52 PPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-----SYKLSEA 121 (192)
Q Consensus 52 P~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-----SFKLs~~ 121 (192)
++|.+||.|||.+|+||+|||+++|.+||+++|+. ++++|+.+|+.+|+++|++|.|+|++| ||+|+..
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~-~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k 79 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWF-DQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRK 79 (83)
Confidence 68999999999999999999999999999999974 568999999999999999999999997 9999864
No 8
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.95 E-value=0.054 Score=40.32 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
.-+|..||..||.+.. ..+.+..-|-.||+++|+. ..+..+..-|++.|- -++-|+++
T Consensus 5 p~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 5 PFTYATLIRQAIMESS-DRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp SCCHHHHHHHHHHHST-TSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 4579999999999854 4569999999999999863 234456666666554 34455554
No 9
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=94.12 E-value=0.099 Score=39.42 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
.-+|..||..||.+.. ..+.+..-|-.||+++|+. ..+..+..-|++.|-- +.-|+++
T Consensus 5 p~SY~~LI~~AI~~sp-~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~kv 64 (102)
T 1vtn_C 5 PYSYISLITMAIQQAP-GKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSF---NDCFVKV 64 (102)
T ss_dssp SSCHHHHHHHHHHTST-TSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHH---CTTEEEE
T ss_pred CCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhh---ccceEec
Confidence 4579999999999753 4468999999999999974 2344566667766543 5677776
No 10
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=94.06 E-value=0.14 Score=39.12 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 50 sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
..-+|..||..||.... ....+..-|-.||+++|+. ..+..+..-|++.|- -+.-|+++
T Consensus 17 Pp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 17 PPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp CSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 34569999999999954 4468999999999999974 233556666666553 45677765
No 11
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=93.06 E-value=0.11 Score=37.93 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CC-----chhHHHHHHHHHHHHHhcCceEecC
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--EL-----PANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~l-----p~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.-+|..||..||....++ ..+.+.|-.||+++|+. .. ...+..-|++.|- -+.-|++|.
T Consensus 7 ~~SY~~LI~~Ai~~sp~~-~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 7 NQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp SCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCHHHHHHHHHHhCCcC-CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 457999999999996654 49999999999999863 11 1245556666543 356677654
No 12
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.98 E-value=0.12 Score=39.56 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
.-+|..||..||.+.. ....+..-|-.||+++|+. ..+..+..-|+..|- -+.-|+++
T Consensus 5 p~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 64 (109)
T 2hfh_A 5 PYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 64 (109)
T ss_dssp CCCHHHHHHHHHHTCS-SSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH---HHTCCBCC
T ss_pred CCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh---hhhhhhcC
Confidence 4579999999998754 4568999999999999963 223445555555443 33455554
No 13
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.92 E-value=0.085 Score=39.45 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
--+|..||..||.+.. ..+.+..-|-.||+++|+. ..+..+..-|++.|-- +.-|+++
T Consensus 4 p~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~Kv 63 (97)
T 2hdc_A 4 PYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSL---NDCFVKI 63 (97)
T ss_dssp CCCHHHHHHHHHHTCT-TTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHH---HHCCEEE
T ss_pred CCCHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhh---hhheeec
Confidence 3579999999998754 4568999999999999963 1123344455554432 2445544
No 14
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=92.81 E-value=0.21 Score=38.52 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CC-----chhHHHHHHHHHHHHHhcCceEecC
Q 029524 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--EL-----PANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 50 sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~l-----p~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
..-+|..||..||..-. ....++.-|-.||+++|+. .- ...+..-|++.|- -+.-|+++.
T Consensus 12 Pp~SYa~LI~~AI~~sp-~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv~ 78 (117)
T 3coa_C 12 GNLSYADLITKAIESSA-EKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRVQ 78 (117)
T ss_dssp BSCCHHHHHHHHHHTST-TSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhcccc
Confidence 34689999999999754 4568999999999999863 11 1345555665543 457777763
No 15
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.53 E-value=0.1 Score=39.20 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhcCceEec
Q 029524 51 HPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--ELPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 51 HP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
.-+|..||..||.+..+ ...+.+-|-.||+++|+. ..+..+..-|++.|- -+.-|+++
T Consensus 4 p~SY~~LI~~AI~~sp~-~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 4 PYSYIALITMAIRDSAG-GRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ---CHHHHHHHHTTSSS-SCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCHHHHHHHHHHhCCC-CCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 34688999999998554 459999999999999974 112334444555443 23456654
No 16
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=92.41 E-value=0.14 Score=39.09 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--CC-----chhHHHHHHHHHHHHHhcCceEecC
Q 029524 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--EL-----PANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 50 sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~l-----p~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
..-+|..||..||....++ ..++..|-.||+++|+. .. ...+..-|++.|- -+.-|++|-
T Consensus 25 PpySY~~LI~~AI~~sp~~-~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 25 GNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp BSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCCcc-CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 3467999999999996654 49999999999999863 11 1345666666543 456677763
No 17
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=90.76 E-value=0.21 Score=40.23 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCC--C-----chhHHHHHHHHHHHHHhcCceEecC
Q 029524 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDE--L-----PANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 50 sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~--l-----p~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.--+|..||..||....+ ...++.-|-.||+++|+.- . ...+..-|++.| .-+.-|+++-
T Consensus 41 Pp~SYa~LI~~AI~sSp~-k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNL---SLnk~F~Kv~ 107 (150)
T 1e17_A 41 GNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL---SLHSKFIKVH 107 (150)
T ss_dssp CSCCHHHHHHHHHHHSSS-CCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHH---HSSTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCCC-CCccHHHHHHHHHHhCchhccCCCCccccchhhccceee---eeeeeeEecC
Confidence 346899999999998544 4589999999999999631 0 133455555544 3456677764
No 18
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=89.81 E-value=0.48 Score=37.69 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCC--C-CchhHHHHHHHHHHHHHhcCceEec
Q 029524 50 SHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKD--E-LPANFRKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 50 sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~--~-lp~nf~~lLk~aLKk~Ve~G~LVqv 112 (192)
..-+|..||..||....+ .+.+...|-.||+++|+. . -...+..-|++.| .-+.-|+++
T Consensus 19 PpySYa~LI~~AI~~sp~-~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNL---Sln~~F~r~ 80 (142)
T 3g73_A 19 PPYSYMAMIQFAINSTER-KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNL---SLHDMFVRE 80 (142)
T ss_dssp CSSCHHHHHHHHHHTSTT-SEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHH---HHCTTEEEE
T ss_pred CCCCHHHHHHHHHHhCCC-CCcCHHHHHHHHHHhCCCccccCCCCccchhhhhh---hhhhhheec
Confidence 345799999999988554 449999999999999973 1 2234555666544 345666664
No 19
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=84.41 E-value=1.1 Score=32.21 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCCCcH---HHHHHHHHHhC
Q 029524 56 QMITEALMALQDKSGSSP---YAIAKYMEEKH 84 (192)
Q Consensus 56 eMI~EAI~aLkeR~GSS~---~AIkKYIe~~Y 84 (192)
+.|.+||.++..|+|.|. |-|..||.+||
T Consensus 51 eyinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 51 EYINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 445678899999999997 56899999987
No 20
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=84.23 E-value=1.5 Score=31.52 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCccccc
Q 029524 52 PPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEAAAG 124 (192)
Q Consensus 52 P~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~Kk 124 (192)
-+..++|.+-|..|.+ |.++..|...+.=+ .+.++..|..+.+.|-|....|.|.|.+.+.+
T Consensus 4 Rs~~eIi~~IL~~i~~--~~~~t~La~~~~ls---------~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~ 65 (95)
T 1r7j_A 4 KSKLEIIQAILEACKS--GSPKTRIMYGANLS---------YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEE 65 (95)
T ss_dssp CCHHHHHHHHHHHHTT--CBCHHHHHHHHTCC---------HHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHhCcC---------HHHHHHHHHHHHHCCCeEEECCeeEEChhHHH
Confidence 4577888888888874 48888887665332 23589999999999999999999999988864
No 21
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=79.90 E-value=4.6 Score=29.49 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcC-------CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecC
Q 029524 54 YFQMITEALMALQ-------DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 119 (192)
Q Consensus 54 Y~eMI~EAI~aLk-------eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs 119 (192)
|..+..+.+..|. ++-|.++.-|...+..++ + ..++..-|..++++|.|++..|.+.|+
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~----~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp 129 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL----P---ARVYQALLEEWSREGRLQLAANTVALA 129 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS----C---HHHHHHHHHHHHHTTSEEECSSEEEET
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC----C---HHHHHHHHHHHHHCCCEEecCCEEECC
Confidence 4455555555565 799999999988774333 2 345677888999999999998877764
No 22
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=78.05 E-value=6.8 Score=27.08 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---CceecCcc
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---ASYKLSEA 121 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---GSFKLs~~ 121 (192)
....|++.|..+.+..+.|...|++.+. ++ +.-+++.|.+|...|.|..+. |.|.+.++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg------vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~~ 76 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG------TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 76 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC------CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC------cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecCC
Confidence 3466888888888777899998888764 33 456999999999999998864 47776653
No 23
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=74.91 E-value=4.2 Score=29.78 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHhCCCCCchhH
Q 029524 53 PYFQMITEALMALQDKSG-SSPYAIAKYMEEKHKDELPANF 92 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~G-SS~~AIkKYIe~~Y~~~lp~nf 92 (192)
...++|.+||.++.+..| ++...|..||...|+.-++.|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnY 48 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW 48 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTT
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCcccc
Confidence 578999999999988666 8999999999999985344453
No 24
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=74.68 E-value=9.3 Score=26.21 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=39.9
Q ss_pred HcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC----ceecCcccc
Q 029524 64 ALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA----SYKLSEAAA 123 (192)
Q Consensus 64 aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG----SFKLs~~~K 123 (192)
.|.+..|.+...|.+.|.+.... . ...+...|++|++.|.|.+... .|.|.+.+.
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~i--s---~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~ 74 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPM--S---TATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGK 74 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCC--C---HHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCcCHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHH
Confidence 34456789999998888777653 2 4568999999999999987532 455665554
No 25
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=71.27 E-value=20 Score=25.17 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---CceecCccc
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---ASYKLSEAA 122 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---GSFKLs~~~ 122 (192)
.+.|++.|.......+.|...|++.+. ++ +.-|+.+|.+|...|.|..+. |.|.|....
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg------vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG------TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC------cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 344667777655555788877777653 22 457999999999999998764 477776543
No 26
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=70.87 E-value=7.3 Score=27.87 Aligned_cols=52 Identities=12% Similarity=0.325 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
..++|..+|..|.+...++..-|++ ..+ ++ ++-++++|=+|..+|.|..+-|
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAk----kLg--~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSN----RLK--IN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHH----HTT--CC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHH----HHC--CC---HHHHHHHHHHHHHCCCEecCCC
Confidence 5689999999999887777665554 454 33 4569999999999999988776
No 27
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=70.29 E-value=13 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecCcccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLSEAAA 123 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~K 123 (192)
...|.++|+.|.+.|.|....|.|.|...+.
T Consensus 57 ~~tv~~~L~~L~~~Glv~~~~g~y~l~~~g~ 87 (96)
T 1y0u_A 57 KKQLDYHLKVLEAGFCIERVGERWVVTDAGK 87 (96)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECTTTC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEECCCch
Confidence 4569999999999999998768899987653
No 28
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=68.58 E-value=17 Score=24.09 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-CceecC
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYKLS 119 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFKLs 119 (192)
+.+.|++.|.. +....|...|...+ + ++ +..+.+.|+.|.+.|.|+..+ |.|.|.
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~~l----g--ls---r~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVKKC----Q--VP---KKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHHHH----C--SC---HHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 34556666654 22347777766544 3 33 567899999999999998754 788875
No 29
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.34 E-value=15 Score=24.52 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
...|++.|.... ....|...|...+.+.++. ++ ..-+.+.|..|++.|.|.++.
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~-is---~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEE-IG---LATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCC-CC---HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCC-CC---HhhHHHHHHHHHHCCCeEEEe
Confidence 455666665321 1468999999999887763 33 446899999999999999875
No 30
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=64.01 E-value=27 Score=23.16 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
....|++.|.. ..+.|...|...+..... +. ..-+...|++|+++|.|.+..
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~--~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTST--WS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSC--CC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCC--cc---HHHHHHHHHHHHHCCCeEEEe
Confidence 44556676665 457999999999976532 22 446899999999999999865
No 31
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=63.57 E-value=23 Score=24.58 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHc---CCCCCCcHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Q 029524 51 HPPYFQMITEALMAL---QDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAA 105 (192)
Q Consensus 51 HP~Y~eMI~EAI~aL---keR~GSS~~AIkKYIe~~Y-~~~lp~nf~~lLk~aLKk~Ve 105 (192)
.++..+-|.++|.++ -|-.-+|...|++-++++| +.+|. ..+.+|+..+...++
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs-~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT-ERKDFIKTTVKELIS 67 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS-HHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh-HHHHHHHHHHHHHHh
Confidence 345577788887764 3556689999999999999 66675 557788888776654
No 32
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=63.47 E-value=8.8 Score=28.90 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHhCCCCCchhH
Q 029524 53 PYFQMITEALMALQDKSG-SSPYAIAKYMEEKHKDELPANF 92 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~G-SS~~AIkKYIe~~Y~~~lp~nf 92 (192)
...++|.+||..+.+..| ++...|..||...|+.-++.|+
T Consensus 21 ~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnY 61 (105)
T 2kpm_A 21 FPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLY 61 (105)
T ss_dssp CCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGT
T ss_pred HHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCcccc
Confidence 458999999999988766 8999999999999985345453
No 33
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.63 E-value=32 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHcC-CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCccccc
Q 029524 56 QMITEALMALQ-DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEAAAG 124 (192)
Q Consensus 56 eMI~EAI~aLk-eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~Kk 124 (192)
..++..|..|. +..+.|...|...+. ++ ...+...|++|.+.|.|.+..+.|.|...+..
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~------is---~~tv~~~l~~Le~~Gli~r~~~~~~Lt~~g~~ 76 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLK------IA---PSSVFEEVSHLEEKGLVKKKEDGVWITNNGTR 76 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhC------CC---hHHHHHHHHHHHHCCCEEecCCeEEEChhHHH
Confidence 44556676653 345788888887662 22 45689999999999999987777888877654
No 34
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=62.47 E-value=6.4 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCceEe-cCCceecC
Q 029524 93 RKILAVQLKHFAAKGNLIK-IRASYKLS 119 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVq-vKGSFKLs 119 (192)
...|..-|.++|+.|+|+. ..|.|+|.
T Consensus 47 ~~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 47 LQQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 3679999999999999997 58899984
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.31 E-value=25 Score=23.52 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-C---ceecCccc
Q 029524 66 QDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-A---SYKLSEAA 122 (192)
Q Consensus 66 keR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-G---SFKLs~~~ 122 (192)
.+..+.|...|...+ + ++ ...+.++|+.|.+.|.|.... | .|.|...+
T Consensus 34 ~~~~~~s~~ela~~l----~--is---~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----G--LS---ASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp TTCCSEEHHHHHHHH----C--CC---HHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred HhCCCcCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 344456666666655 1 22 456899999999999998764 3 46676543
No 36
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=59.87 E-value=5.6 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHcCCCCCCcHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHH
Q 029524 62 LMALQDKSGSSPYAIAKYMEEKHK-DELPANFRKILAVQLKHF 103 (192)
Q Consensus 62 I~aLkeR~GSS~~AIkKYIe~~Y~-~~lp~nf~~lLk~aLKk~ 103 (192)
|.+|-++-|+|+.+|..+|..+.. ..+.+.....|..+++.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 456667789999999999987651 014555566666665543
No 37
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=57.22 E-value=28 Score=23.72 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=33.2
Q ss_pred cCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-C---ceecCccc
Q 029524 65 LQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-A---SYKLSEAA 122 (192)
Q Consensus 65 LkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-G---SFKLs~~~ 122 (192)
|.+ .+.|...|...+ + ++ ...|.++|+.|.+.|.|.... | .|.|....
T Consensus 32 L~~-~~~~~~ela~~l----~--is---~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (98)
T 3jth_A 32 LHN-QELSVGELCAKL----Q--LS---QSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE 83 (98)
T ss_dssp TTT-SCEEHHHHHHHH----T--CC---HHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred Hhc-CCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence 344 566777777666 2 22 446899999999999998765 3 57776543
No 38
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=51.89 E-value=21 Score=24.92 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCceEec
Q 029524 93 RKILAVQLKHFAAKGNLIKI 112 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqv 112 (192)
...|++-|..+.+.|.|.++
T Consensus 30 ~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 30 QPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEe
Confidence 34589999999999999998
No 39
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=51.40 E-value=30 Score=28.52 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcC-------CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCc
Q 029524 54 YFQMITEALMALQ-------DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSE 120 (192)
Q Consensus 54 Y~eMI~EAI~aLk-------eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~ 120 (192)
|.++..+.+..|. ++-|.++..|...+.... + ..++..-|..+++.|.|++..|.+.|+.
T Consensus 64 ~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~~~----~---~~l~~~ll~~l~~~g~l~~~~~~v~l~~ 130 (258)
T 1lva_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL----P---ARVYQALLEEWSREGRLQLAANTVALAG 130 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS----C---HHHHHHHHHHHHHTTSEEEETTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhccccC----C---HHHHHHHHHHHHHCCCEEecCCEEeCCC
Confidence 3444444444555 589999999988874322 2 3456777889999999999999888854
No 40
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=49.77 E-value=40 Score=24.12 Aligned_cols=55 Identities=7% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC---ceecCc
Q 029524 56 QMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA---SYKLSE 120 (192)
Q Consensus 56 eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG---SFKLs~ 120 (192)
++...-|.-|. ++|.|...|++-+ + ++ +.-++++|.+|...|.|+...| .+.|..
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~L----g--iS---k~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~ 74 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQL----N--ME---KREVNKALYDLQRSAMVYSSDDIPPRWFMTT 74 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHHS----S--SC---HHHHHHHHHHHHHHTSSEECSSSSCEEESCC
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEeCCCCCCcceecc
Confidence 34444455566 5778877776644 3 33 4569999999999999999876 445543
No 41
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.36 E-value=62 Score=24.16 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecC
Q 029524 53 PYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLS 119 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs 119 (192)
+-...|++.|... ....|...|...+...++. +. ..-|-+.|..|++.|.|.++. | .|.+.
T Consensus 22 ~qR~~Il~~L~~~--~~~~sa~ei~~~l~~~~~~-is---~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 22 PQRHAILEYLVNS--MAHPTADDIYKALEGKFPN-MS---VATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHHC--SSCCCHHHHHHHHGGGCTT-CC---HHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHHhCCC-CC---hhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 3556788888763 3358889999999888763 33 346899999999999999865 2 47654
No 42
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=49.34 E-value=18 Score=24.97 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHH
Q 029524 62 LMALQDKSGSSPYAIAKYMEEKHKDELPANFRKIL 96 (192)
Q Consensus 62 I~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lL 96 (192)
...|.+.-|+|+++|.+||.. . .+|......|
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g-~--~iP~~~~~~I 44 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA-G--EIPPLRQSDI 44 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-T--SCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC-C--CCCHHHHHHH
Confidence 456667889999999999986 2 3676554333
No 43
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=47.65 E-value=62 Score=25.72 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCC-CCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-CceecCccccc
Q 029524 55 FQMITEALMALQD-KSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYKLSEAAAG 124 (192)
Q Consensus 55 ~eMI~EAI~aLke-R~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFKLs~~~Kk 124 (192)
.++.+++|-.|.+ ..+.+...|..++. + . ...+...|++|.+.|.|.+.. +.+.|.+.+..
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~----v--s---~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~ 66 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQ----V--S---PPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLK 66 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHT----C--C---HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHC----C--C---hhHHHHHHHHHHHCCCEEEecCCCeEECHHHHH
Confidence 3556778877765 55688888887773 1 1 446899999999999999876 56777777654
No 44
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.63 E-value=65 Score=23.58 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
..+|++.|... ..-.|...|...+.+.++. +. ..-+-+.|..|++.|.|.++.
T Consensus 13 R~~Il~~l~~~--~~~~sa~ei~~~l~~~~~~-is---~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 13 RAAISTLLETL--DDFRSAQELHDELRRRGEN-IG---LTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHC--CSCEEHHHHHHHHHHTTCC-CC---HHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHhCCC-CC---HhhHHHHHHHHHHCCCEEEEE
Confidence 46788888753 3458999999999998863 33 446889999999999998865
No 45
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.80 E-value=78 Score=23.84 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecC
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLS 119 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs 119 (192)
-..+|++.|.... .-.|...|...+...++. +. ..-|-+.|..|++.|.|.++. | .|.+.
T Consensus 28 qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~-is---~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 28 QREEVVSVLYRSG--THLSPEEITHSIRQKDKN-TS---ISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTT-CC---HHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC-CC---HhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 3456777776543 358888888888887763 32 346889999999999998864 3 47653
No 46
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=46.30 E-value=8.6 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 029524 62 LMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHF 103 (192)
Q Consensus 62 I~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~ 103 (192)
|.++-+.-|+|+.+|..+|-.+.. +.+.....|..++..+
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~~--vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPDK--VSQATRNRVEKAAREV 51 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCCC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC--CCHHHHHHHHHHHHHh
Confidence 666777889999999999876543 4556566666665544
No 47
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=46.13 E-value=54 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEec-CCceecCccc
Q 029524 58 ITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKI-RASYKLSEAA 122 (192)
Q Consensus 58 I~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqv-KGSFKLs~~~ 122 (192)
|+++|.. +..+.|...|...+ + ++ +..+.+.|+.|++.|.|.+. .|.|.|+...
T Consensus 13 iL~~l~~--~~~~~~~~ela~~~----g--l~---~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~ 67 (249)
T 1mkm_A 13 ILDFIVK--NPGDVSVSEIAEKF----N--MS---VSNAYKYMVVLEEKGFVLRKKDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHH--CSSCBCHHHHHHHT----T--CC---HHHHHHHHHHHHHTTSEEECTTSCEEECTHH
T ss_pred HHHHHHh--CCCCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCcEEECCCCcEEECHHH
Confidence 4555543 23468887776654 2 33 45688899999999999997 5799998754
No 48
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=45.66 E-value=28 Score=30.22 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCC--CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-Ccee
Q 029524 54 YFQMITEALMALQDK--SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYK 117 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR--~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFK 117 (192)
|.--|..+|..|.+. +=...++...++...|+.. .+.+.-|+++|.-|-..|.|..+. |.|+
T Consensus 191 Wlldi~~cid~i~~~eFtL~diY~fe~~L~~~~P~N--~~Ik~KIRQqLQ~LRD~g~IeFl~rG~Yr 255 (257)
T 4esj_A 191 WTIEILNCIDKIEGSEFTLEDMYRFESDLKNIFVKN--NHIKEKIRQQLQILRDKEIIEFKGRGKYR 255 (257)
T ss_dssp HHHHHHHHHHHSCSSEEEHHHHHTTHHHHHHHSTTC--SCHHHHHHHHHHHHHHTTSEEECSTTEEE
T ss_pred HHHHHHHHHHhcCcceeeHHHHHHHHHHHHHhCCCC--CChhHHHHHHHHHHhhcCceEEecCCccc
Confidence 566688899888764 3344555566677888742 345778999999999999999976 8887
No 49
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=45.27 E-value=56 Score=22.74 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
...|+..|.. ..|.|...|..++...+. +. ...+...|++|++.|.|.+..
T Consensus 12 ~~~vL~~l~~---~~~~t~~ela~~l~~~~~--~s---~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 12 EWEVMNIIWM---KKYASANNIIEEIQMQKD--WS---PKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHH---HSSEEHHHHHHHHHHHCC--CC---HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHh---CCCcCHHHHHHHHhccCC--Cc---HhhHHHHHHHHHHCCCeEEEe
Confidence 3456666655 457999999999986543 22 456899999999999999764
No 50
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=44.54 E-value=35 Score=23.99 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 57 MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.|...|-. ..|.|...|..++...++ +. ..-+...|.+|+++|.|.+..
T Consensus 14 ~vL~~L~~---~~~~t~~el~~~l~~~~~--~~---~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWD---KKSVSANEIVVEIQKYKE--VS---DKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHH---SSSEEHHHHHHHHHTTSC--CC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHh---cCCCCHHHHHHHHhhcCC--CC---hhhHHHHHHHHHHCCceEEEe
Confidence 45556655 357999999999986543 21 456899999999999999865
No 51
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.61 E-value=52 Score=24.54 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecCc
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLSE 120 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs~ 120 (192)
..+|++.|.... .-.|...|...+...++. +. ..-|-+.|..|++.|.|.++. | .|.+..
T Consensus 16 R~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~-is---~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~ 80 (139)
T 3mwm_A 16 RAAVSAALQEVE--EFRSAQELHDMLKHKGDA-VG---LTTVYRTLQSLADAGEVDVLRTAEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHHTTCS--SCEEHHHHHHHHHHTTCC-CC---HHHHHHHHHHHHHTTSSEEEECTTSCEEEECCS
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHhCCC-CC---HHHHHHHHHHHHHCCCEEEEEcCCCceEEEECC
Confidence 456777776543 368999999999988863 33 446889999999999998864 2 676643
No 52
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.27 E-value=35 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCceEecCC
Q 029524 94 KILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 94 ~lLk~aLKk~Ve~G~LVqvKG 114 (192)
.-+...|..|.+.|.|.++-|
T Consensus 39 ~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 39 YQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHCCcEEecCC
Confidence 449999999999999999865
No 53
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.81 E-value=74 Score=23.84 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecC
Q 029524 53 PYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLS 119 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs 119 (192)
+-..+|++.|.... -.|...|...+...++. +. ..-|-+.|..+++.|.|.++. | .|-+.
T Consensus 19 ~qR~~Il~~l~~~~---h~ta~ei~~~l~~~~~~-is---~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE---HATPDDILGEVRKTASG-IN---ISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHHHHS---SBCHHHHHHHHHTTCTT-CC---HHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred HHHHHHHHHHHhcC---CCCHHHHHHHHHhhCCC-CC---HhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 35677888887653 58999999999888763 32 446889999999999998864 2 56654
No 54
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=42.29 E-value=1e+02 Score=22.88 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHH---HHHHHcC---CCCCCcHHHHHHHHHHhCCCCCc-----hhHHHHHHHHHHHHHh-cCceEecCC
Q 029524 47 KTPSHPPYFQMIT---EALMALQ---DKSGSSPYAIAKYMEEKHKDELP-----ANFRKILAVQLKHFAA-KGNLIKIRA 114 (192)
Q Consensus 47 k~~sHP~Y~eMI~---EAI~aLk---eR~GSS~~AIkKYIe~~Y~~~lp-----~nf~~lLk~aLKk~Ve-~G~LVqvKG 114 (192)
-.-++-.|..|.. .=|.... +..|.....+-.|-.+....++. ...+.++..-|++||. .|.|+.+.|
T Consensus 6 ~~Is~d~Y~~i~n~lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D~iLi~v~~ 85 (114)
T 2klq_A 6 LRLGFSEYSRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDHVLIELTQ 85 (114)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTCCEECCSS
T ss_pred eEeeHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhCCEEEEEcC
Confidence 3445556666443 3333221 46899999988877666543332 2457899999999999 999998876
No 55
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=42.02 E-value=20 Score=27.27 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCCCCcH----------HHHHHH--HHHhCCCCCchhH-HHHHHHHHHHHHhcCceEecCCc-----
Q 029524 54 YFQMITEALMALQDKSGSSP----------YAIAKY--MEEKHKDELPANF-RKILAVQLKHFAAKGNLIKIRAS----- 115 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~----------~AIkKY--Ie~~Y~~~lp~nf-~~lLk~aLKk~Ve~G~LVqvKGS----- 115 (192)
...||+.||..+++|-|.+. +-|..+ -..-|+ +..++ ...+..-|+.|+..|-|...-+.
T Consensus 17 ~AqkiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfG--igk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~ 94 (134)
T 3aaf_A 17 QAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFG--TGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMK 94 (134)
T ss_dssp HHHHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTT--TTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCE
T ss_pred HHHHHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccC--CCCCCCHHHHHHHHHHHHHcCCceeecCcCccCc
Confidence 56899999999999988665 223332 002222 22232 56688889999999999876543
Q ss_pred -eecCcccc
Q 029524 116 -YKLSEAAA 123 (192)
Q Consensus 116 -FKLs~~~K 123 (192)
++|.+.+.
T Consensus 95 ~L~Lt~~g~ 103 (134)
T 3aaf_A 95 ICALTKKGR 103 (134)
T ss_dssp EEEECHHHH
T ss_pred eEEECHHHH
Confidence 56655443
No 56
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=41.41 E-value=81 Score=25.55 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred HHHHHcCC-CCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCccc
Q 029524 60 EALMALQD-KSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEAA 122 (192)
Q Consensus 60 EAI~aLke-R~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~ 122 (192)
+-|..|.+ ..+.|...|...+ + ++ +..+.+.|+.|++.|.|.+..|.|.|+...
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~----g--l~---~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~ 72 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEA----G--LS---RPAVRRILLTLQKLGYVAGSGGRWSLTPRV 72 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHH----T--CC---HHHHHHHHHHHHHTTSEEEETTEEEECGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEeCCCEEEEcHHH
Confidence 33445543 5678998888766 2 33 456888899999999999988899998765
No 57
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.39 E-value=85 Score=23.07 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecC
Q 029524 53 PYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLS 119 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs 119 (192)
+-..+|++.|.... ..-.|...|...+...++. +. ..-|-+.|..|++.|.|.++. | .|.+.
T Consensus 18 ~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~-is---~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 18 LPRVKILQMLDSAE-QRHMSAEDVYKALMEAGED-VG---LATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCC-CC---HHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCC-CC---HHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 35567888887532 1458999999999998863 33 346899999999999999875 2 57663
No 58
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=40.49 E-value=82 Score=23.51 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC------ceecCccccc
Q 029524 53 PYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA------SYKLSEAAAG 124 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG------SFKLs~~~Kk 124 (192)
.|.-+|+..|. ..+.+...|...+ + +. ...|...|++|.+.|.|.+... .|.|.+.+..
T Consensus 24 ~w~l~IL~~L~----~g~~~~~eLa~~l----g--is---~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~ 88 (146)
T 2f2e_A 24 GWSMLIVRDAF----EGLTRFGEFQKSL----G--LA---KNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRA 88 (146)
T ss_dssp SSHHHHHHHHH----TTCCSHHHHHHHH----C--CC---HHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHT
T ss_pred chHHHHHHHHH----hCCCCHHHHHHHh----C--CC---HHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHH
Confidence 35555666663 2357788877776 2 22 4569999999999999998652 6788877654
No 59
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=40.45 E-value=39 Score=28.97 Aligned_cols=56 Identities=5% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCC---CC-C-CcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecC
Q 029524 55 FQMITEALMALQD---KS-G-SSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 119 (192)
Q Consensus 55 ~eMI~EAI~aLke---R~-G-SS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs 119 (192)
...+...|..|.+ +. . ++..-+..|+++.|+ -+...|+++|.+|+|+-+.|.|-.+
T Consensus 49 ~~~~~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~P---------e~~~~vk~lV~~Grle~vgG~wve~ 109 (298)
T 1o7d_A 49 QYILDSVISSLLANPTRRFIYVEIAFFSRWWRQQTN---------ATQKIVRELVRQGRLEFANGGWVMN 109 (298)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHTSCH---------HHHHHHHHHHHTTSEEESSCSSSCB
T ss_pred HHHHHHHHHHHHHCCCCeEEEecchHhHHHHHhcCH---------HHHHHHHHHHHCCCEEEECceeecc
Confidence 3445555555532 21 1 245567888888765 2667799999999999999988544
No 60
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=39.49 E-value=16 Score=26.74 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKH 102 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk 102 (192)
.+++...|.+|-++.|+|..+|-+|...-...+. ..|+..|...|..
T Consensus 35 ~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf-~efk~~l~~~~~~ 81 (111)
T 2o3f_A 35 HXAIESTVNEISALANSSDAAVIRLCXSLGLKGF-QDLXMRVAGDLAK 81 (111)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSH-HHHHHHHHHHHHS
T ss_pred HHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCH-HHHHHHHHHHHHh
Confidence 4455566888999999999999999976543222 4566666666643
No 61
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=39.08 E-value=59 Score=26.19 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--CceecCccc
Q 029524 58 ITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 58 I~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
|+++|.. +..|.|...|...+ + ++ +.-+.+.|..|++.|.|.+.. |.|.|+...
T Consensus 11 iL~~l~~--~~~~~s~~ela~~~----g--l~---~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~ 66 (241)
T 2xrn_A 11 IMRALGS--HPHGLSLAAIAQLV----G--LP---RSTVQRIINALEEEFLVEALGPAGGFRLGPAL 66 (241)
T ss_dssp HHHHHHT--CTTCEEHHHHHHHT----T--SC---HHHHHHHHHHHHTTTSEEECGGGCEEEECSHH
T ss_pred HHHHHHh--CCCCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEEeCCCCeEEECHHH
Confidence 4444432 23478888877654 2 43 456888999999999999975 789998654
No 62
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.24 E-value=72 Score=24.07 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceec
Q 029524 53 PYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKL 118 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKL 118 (192)
+-..+|++.|....+ .-.|...|...+...++. +. ..-|-+.|..|++.|.|..+. | .|.+
T Consensus 17 ~qR~~Il~~L~~~~~-~h~sa~ei~~~l~~~~~~-is---~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 17 LPRLKILEVLQQPEC-QHISAEELYKKLIDLGEE-IG---LATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHHTSGGG-SSEEHHHHHHHHHHTTCC-CC---HHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHhCCC-CCCCHHHHHHHHHHhCCC-CC---HHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 345677777764321 358999999999988763 33 346899999999999998874 3 5765
No 63
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=36.93 E-value=1.1e+02 Score=21.62 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC
Q 029524 49 PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 49 ~sHP~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
..-.....||+..|....+ .|.+...|++.+ + ++ ...|...|++|..+|.|.+++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~-~gi~qkeLa~~~----~--l~---~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGN-KGIWSRDVRYKS----N--LP---LTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCT-TCEEHHHHHHHT----T--CC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred cCCCHHHHHHHHHHHHcCC-CCcCHHHHHHHH----C--CC---HHHHHHHHHHHHHCCCEEEecC
Confidence 3445677899999987554 489998887654 2 33 4469999999999999997663
No 64
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=36.87 E-value=79 Score=25.81 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHHcCC-CCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCccccc
Q 029524 60 EALMALQD-KSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEAAAG 124 (192)
Q Consensus 60 EAI~aLke-R~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~Kk 124 (192)
+-|..|.+ ..|.|...|...+ + ++ +..+.+.|+.|++.|.|.+..|.|.|+...-.
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~----g--l~---~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARAT----D--LT---RATARRFLLTLVELGYVATDGSAFWLTPRVLE 81 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHH----T--CC---HHHHHHHHHHHHHHTSEEESSSEEEECGGGGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEecCCEEEEcHHHHH
Confidence 33444543 5678988888766 2 33 45688889999999999998889999876543
No 65
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=36.31 E-value=64 Score=23.52 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
...|...|-.. ..|.|...|..++....+ +. ..-+...|.+|+++|.|.+..
T Consensus 11 e~~vL~~L~~~--~~~~t~~el~~~l~~~~~--~~---~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSR--TEPQTVRQVHEALSARRD--LA---YTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTC--SSCEEHHHHHHHHTTTCC--CC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHhccCC--CC---HHHHHHHHHHHHHCCCEEEEe
Confidence 34456665543 357999999999976533 22 456899999999999999876
No 66
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=35.43 E-value=1.1e+02 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.|.+...|...|-..++..+-.....-+..+|..|++.|.|....
T Consensus 235 ~~~t~~ei~~~~~~~~p~~l~~~a~~~~~ahL~~L~~~g~v~~~~ 279 (289)
T 4ad9_A 235 KSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNT 279 (289)
T ss_dssp CCBCHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHCCcEEEEe
Confidence 478888888877443332111112334788999999999998764
No 67
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=35.22 E-value=57 Score=23.49 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC----ceecCccccc
Q 029524 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA----SYKLSEAAAG 124 (192)
Q Consensus 57 MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG----SFKLs~~~Kk 124 (192)
+|.=.|..++ ....+...|.+-|.+.|...+. .-.|--.|++|.++|-|....| -|.|.+.+..
T Consensus 12 ~~IL~lL~~~-~~~~~g~~i~~ei~~~~~~~is---~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~ 79 (99)
T 2co5_A 12 YIILKVLVIN-GSRLEKKRLRSEILKRFDIDIS---DGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMK 79 (99)
T ss_dssp HHHHHHHHHT-TTEEEGGGHHHHHHHHHCCBCC---HHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHH
T ss_pred HHHHHHHHhc-CCCCcHHHHHHHHHHHhCCCCC---CCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHH
Confidence 3333444444 2345667888899888853332 3468999999999999987544 5888877654
No 68
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=35.06 E-value=1.2e+02 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecCc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLSE 120 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs~ 120 (192)
+..|++.|+.+.+.|.|....|.+.|-.
T Consensus 201 r~tvsR~l~~L~~~g~I~~~~~~i~i~d 228 (230)
T 3iwz_A 201 REMAGRVLKKLQADGLLHARGKTVVLYG 228 (230)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEee
Confidence 5569999999999999998888877643
No 69
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=34.82 E-value=1.2e+02 Score=22.36 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecCcc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLSEA 121 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~ 121 (192)
+..|++.|+.+.+.|.|....|.+.|-..
T Consensus 160 r~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 188 (202)
T 2zcw_A 160 RETVTKVIGELAREGYIRSGYGKIQLLDL 188 (202)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred HHHHHHHHHHHHHCCCEEeCCCEEEEeCH
Confidence 55689999999999999988888877543
No 70
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=34.06 E-value=1.3e+02 Score=21.52 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC---CceecCccccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR---ASYKLSEAAAG 124 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---GSFKLs~~~Kk 124 (192)
..|...| .+.++ ++ ...|.+.|..|...|.|.... |.|.|......
T Consensus 26 ~~s~~el----a~~~~--i~---~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 26 PTSLKSI----AQTNN--LS---EHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp CBCHHHH----HHHTT--SC---HHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred cCCHHHH----HHHHC--cC---HHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 3555544 44554 44 446999999999999998874 57999876544
No 71
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=33.17 E-value=71 Score=22.87 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHc-CCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-CceecCccccc
Q 029524 57 MITEALMAL-QDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYKLSEAAAG 124 (192)
Q Consensus 57 MI~EAI~aL-keR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFKLs~~~Kk 124 (192)
.++..|..| .+..+.|...|...+ + ++ ...+...|++|...|.|.+.. +.|.|.+.+..
T Consensus 8 ~~L~~i~~l~~~~~~~~~~ela~~l----~--vs---~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~ 68 (142)
T 1on2_A 8 MYIEQIYMLIEEKGYARVSDIAEAL----A--VH---PSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKK 68 (142)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHH----T--SC---HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHh----C--CC---HHHHHHHHHHHHHCCCEEEeeCceEEEchhHHH
Confidence 344444443 234568888887765 2 22 446889999999999999876 57888876643
No 72
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=32.75 E-value=1.4e+02 Score=21.50 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-----C----ceecCccccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-----A----SYKLSEAAAG 124 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-----G----SFKLs~~~Kk 124 (192)
-.+-+.|.+.|.+.+...+..+ ...|...|++|..+|.|.... | -|.|.+.+..
T Consensus 25 ~~~Gyei~~~l~~~~~~~~~i~-~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~ 87 (116)
T 3f8b_A 25 DNYVYGIIKQVKEASNGEMELN-EATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHE 87 (116)
T ss_dssp CBCHHHHHHHHHHHTTTCCCCC-HHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHH
Confidence 3677999999998764322112 456999999999999998642 2 5888887754
No 73
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=32.65 E-value=57 Score=27.26 Aligned_cols=50 Identities=18% Similarity=0.063 Sum_probs=37.5
Q ss_pred HHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEe
Q 029524 60 EALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIK 111 (192)
Q Consensus 60 EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVq 111 (192)
+++..+-++.|.+...|..|+ .++...+.+....-|...+..+ +.|.|-+
T Consensus 236 e~~~~~a~~~gl~~~~i~~yl-~~~~~~l~~~~~~~l~~~~~~~-~~glip~ 285 (301)
T 2i6e_A 236 EVSQRHAEKLGLPERVVQHYL-WNFRYHLEAPDRLGLREFADLA-VPGHAEL 285 (301)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH-HTCBCSCCHHHHHHHHHHHHHH-STTCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHH-HhCeeCCCHHHHHHHHHHHHHH-hcCCCCC
Confidence 344555668899999999999 4554457777777888888888 8887743
No 74
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=32.52 E-value=51 Score=23.11 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCceEecCC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
...|+..|..|+++|-|.+..+
T Consensus 47 ~~~IKk~IE~LIereYl~R~~~ 68 (77)
T 3tdu_C 47 VPVIKKCIDILIEKEYLERVDG 68 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHhhhHhhcCCC
Confidence 3468888899999999998764
No 75
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=32.28 E-value=1.1e+02 Score=22.63 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--CceecCccccc
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--ASYKLSEAAAG 124 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--GSFKLs~~~Kk 124 (192)
.+.-+.++..|....|-|.. .|.+.++ ++.+ +|.+-|..|+..|.|.-+. |-|.|..+..+
T Consensus 8 ~~yAl~~L~~La~~~~~s~~----~IA~~~~--i~~~---~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p~~ 70 (145)
T 1xd7_A 8 LAVAIHILSLISMDEKTSSE----IIADSVN--TNPV---VVRRMISLLKKADILTSRAGVPGASLKKDPAD 70 (145)
T ss_dssp HHHHHHHHHHHHTCSCCCHH----HHHHHHT--SCHH---HHHHHHHHHHHTTSEECCSSSSSCEESSCGGG
T ss_pred HHHHHHHHHHHHhCCCCCHH----HHHHHHC--cCHH---HHHHHHHHHHHCCceEeecCCCCceecCCHHH
Confidence 33344444444433331333 4556665 5544 5889999999999998775 57999877655
No 76
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.05 E-value=1.3e+02 Score=20.94 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
...+...|++|++.|.|..... .|.|.+.+.
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~ 103 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKAD 103 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHH
Confidence 4568999999999999998642 355655554
No 77
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=31.79 E-value=73 Score=23.32 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCHHH---HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC--cee
Q 029524 51 HPPYFQ---MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA--SYK 117 (192)
Q Consensus 51 HP~Y~e---MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG--SFK 117 (192)
-|-|.+ .|.+.|..-.=+-|.-..++.. |.+.|++. +.-++.+|..|...|.|+...| +|-
T Consensus 13 ~PlY~QI~~~i~~~I~~G~l~pG~~LPser~-La~~~gVS-----r~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKGVLQEGEKILSIRE-FASRIGVN-----PNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHH-HHHHHTCC-----HHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccHHH-HHHHHCCC-----HHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 355554 3444444433356654444433 55666642 5679999999999999987664 564
No 78
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.66 E-value=32 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhcCceEecC
Q 029524 93 RKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvK 113 (192)
...|++-|..+.+.|.|.++.
T Consensus 30 ~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 30 QPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEe
Confidence 345899999999999999873
No 79
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.23 E-value=94 Score=22.99 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecCcc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLSEA 121 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~ 121 (192)
+..|++.|+.+.+.|.|....|.+.|-..
T Consensus 153 r~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 181 (195)
T 3b02_A 153 RESVSKVLADLRREGLIATAYRRVYLLDL 181 (195)
T ss_dssp HHHHHHHHHHHHHHTSEEEETTEEEECCH
T ss_pred HHHHHHHHHHHHHCCCEEecCCEEEEeCH
Confidence 55699999999999999988888877543
No 80
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=31.05 E-value=1.6e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHH------HcCCCCCC-cHHHHHHHHHHh
Q 029524 49 PSHPPYFQMITEALM------ALQDKSGS-SPYAIAKYMEEK 83 (192)
Q Consensus 49 ~sHP~Y~eMI~EAI~------aLkeR~GS-S~~AIkKYIe~~ 83 (192)
.-.+-|.+-|.+.|. +++..-|+ |+.+|.+||.++
T Consensus 12 k~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 12 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp SCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 345778888888874 45667899 999999999874
No 81
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=30.94 E-value=60 Score=23.24 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=37.0
Q ss_pred HHHHHHHcC--CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--C--ceecCcc
Q 029524 58 ITEALMALQ--DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--A--SYKLSEA 121 (192)
Q Consensus 58 I~EAI~aLk--eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--G--SFKLs~~ 121 (192)
|.+-|.+|. -+.|++-+.|..-| + +++.+ .+-.+|.+|+..|+|..-+ | .|++...
T Consensus 15 ie~~IL~l~~~~P~GItd~~L~~~~----p-~~~~~---~r~~aIN~LL~~gkiel~K~~~~liYr~k~~ 76 (81)
T 2dk8_A 15 IENRIIELCHQFPHGITDQVIQNEM----P-HIEAQ---QRAVAINRLLSMGQLDLLRSNTGLLYRIKDS 76 (81)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHC----T-TSCHH---HHHHHHHHHHHHTSEEEEECSSSEEEEECCC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHC----C-CCCHH---HHHHHHHHHHHcCCeEEEecCCeEEEEeccc
Confidence 334444443 38999999966655 4 23333 3567888899999988655 3 8888764
No 82
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=30.85 E-value=1e+02 Score=21.76 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCccccc
Q 029524 62 LMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAAG 124 (192)
Q Consensus 62 I~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~Kk 124 (192)
|..|.+..|.|...|..++. +. ...+...|++|++.|-|.+... .+.|.+.+..
T Consensus 42 L~~l~~~~~~t~~eLa~~l~------~~---~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVF------LD---SGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA 102 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHC------CC---hhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHH
Confidence 34455566788888887762 11 4568999999999999998642 4556655543
No 83
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.63 E-value=1.5e+02 Score=21.38 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-ceecC
Q 029524 55 FQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-SYKLS 119 (192)
Q Consensus 55 ~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-SFKLs 119 (192)
.++|+++|.+..+. .+..-|.+ ..+ ++ +.-|+.+|++|-..|.|+.++. .|.|.
T Consensus 21 eekVLe~LkeaG~P--lkageIae----~~G--vd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSP--VKLAQLVK----ECQ--AP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSC--EEHHHHHH----HHT--SC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHcCCC--CCHHHHHH----HHC--CC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 56788888877665 34444433 333 33 6679999999999999999874 66665
No 84
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=30.36 E-value=32 Score=21.94 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=19.8
Q ss_pred HHHcCCCCCCcHHHHHHHHHHhCC
Q 029524 62 LMALQDKSGSSPYAIAKYMEEKHK 85 (192)
Q Consensus 62 I~aLkeR~GSS~~AIkKYIe~~Y~ 85 (192)
..+|.++-|.|+.+|.+|....+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 355778899999999999987754
No 85
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=29.95 E-value=1.6e+02 Score=21.50 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLS 119 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs 119 (192)
+..|++.|+++.+.|.|....|.+.|-
T Consensus 178 r~tvsR~l~~l~~~g~I~~~~~~i~i~ 204 (207)
T 2oz6_A 178 REMVGRVLKSLEEQGLVHVKGKTMVVF 204 (207)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCCEEEEE
Confidence 456999999999999998887777664
No 86
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.75 E-value=1.5e+02 Score=22.72 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHHhcCceEecC---C--ceecC
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEK--HKDELPANFRKILAVQLKHFAAKGNLIKIR---A--SYKLS 119 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~--Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK---G--SFKLs 119 (192)
-..+|++.|.... .-.|...|...+... ++. +. ..-|-+.|..|++.|.|.++. | .|.+.
T Consensus 34 qR~~IL~~L~~~~--~h~sA~eI~~~l~~~~~~~~-is---~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 34 QREVLLKTLYHSD--THYTPESLYMEIKQAEPDLN-VG---IATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHSCC--SCBCHHHHHHHHHHHCGGGC-CC---HHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHhhcCCCC-CC---HHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 3455666665532 346777777777666 442 22 345889999999999999874 2 57765
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.63 E-value=1.9e+02 Score=22.89 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCcc
Q 029524 71 SSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEA 121 (192)
Q Consensus 71 SS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~ 121 (192)
.|...|..++..... +++ ...+..+|..++..|.|....|.|.+...
T Consensus 296 ~~~~~l~~~~~~~~~-~~~---~~~~~~~l~~L~~~gli~~~~~~y~~~~p 342 (350)
T 2qen_A 296 NRWSLIRDYLAVKGT-KIP---EPRLYALLENLKKMNWIVEEDNTYKIADP 342 (350)
T ss_dssp CSHHHHHHHHHHTTC-CCC---HHHHHHHHHHHHHTTSEEEETTEEEESSH
T ss_pred CCHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHhCCCEEecCCEEEEecH
Confidence 577778777766542 232 23477889999999999988888887654
No 88
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=29.51 E-value=1.7e+02 Score=23.62 Aligned_cols=67 Identities=12% Similarity=0.294 Sum_probs=43.1
Q ss_pred HHHHHHHHH-HcC--CCCCCcHHHHHHHHHHhCCCCCch---hHHHHHHHHHHHHHhcCceEecCC--ceecCccc
Q 029524 55 FQMITEALM-ALQ--DKSGSSPYAIAKYMEEKHKDELPA---NFRKILAVQLKHFAAKGNLIKIRA--SYKLSEAA 122 (192)
Q Consensus 55 ~eMI~EAI~-aLk--eR~GSS~~AIkKYIe~~Y~~~lp~---nf~~lLk~aLKk~Ve~G~LVqvKG--SFKLs~~~ 122 (192)
.+.|++.|. +|. ...-.+..-|...|.++.... .. .+-..|...|...+.+|.-|...| +|.+..-.
T Consensus 28 Ve~~l~~i~~~L~~~~~~~Mtk~eLi~~ia~~~~ls-k~da~~vl~~l~~~i~~~L~~G~~V~L~GfGtF~v~~r~ 102 (204)
T 2iie_A 28 VKEMLEHMASTLAQGGSGGLTKAEMSEYLFDKLGLS-KRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKN 102 (204)
T ss_dssp HHHHHHHHHHHHHTCCSSSBCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHhCCCeEEecCCEEEEEEEec
Confidence 345555555 453 344588999999999887631 11 223445666777778888888774 88887543
No 89
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.45 E-value=1.9e+02 Score=22.02 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecCc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLSE 120 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs~ 120 (192)
+..|++.|+.+.+.|.|....|.+.|-.
T Consensus 200 r~tvsR~l~~l~~~glI~~~~~~i~I~d 227 (232)
T 1zyb_A 200 RLNISKTLNELQDNGLIELHRKEILIPD 227 (232)
T ss_dssp HHHHHHHHHHHHHTTSCEEETTEEEESC
T ss_pred hhHHHHHHHHHHHCCCEEecCCEEEEeC
Confidence 5568999999999999998888887754
No 90
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=29.35 E-value=85 Score=21.71 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--CceecCccc
Q 029524 67 DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 67 eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
++.|.|...+...|.. |...|...+.+|.-|+.. |+|.+..-.
T Consensus 12 ~~~~ls~~~~~~~l~~-------------~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (90)
T 2o97_B 12 AGADISKAAAGRALDA-------------IIASVTESLKEGDDVALVGFGTFAVKERA 56 (90)
T ss_dssp HTTC-CHHHHHHHHHH-------------HHHHHHHHHHTTCCEEETTTEEEEEECCC
T ss_pred HHhCCCHHHHHHHHHH-------------HHHHHHHHHHCCCeEEECCCEEEEEEEec
Confidence 4556666655555443 334455555677777776 588887643
No 91
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=28.59 E-value=85 Score=25.93 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-CceecCccc
Q 029524 58 ITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYKLSEAA 122 (192)
Q Consensus 58 I~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFKLs~~~ 122 (192)
|+++|.. +..|.|..-|...+. ++ +.-+.+.|..|++.|-|++.. |.|.|+...
T Consensus 35 IL~~l~~--~~~~ltl~eia~~lg------l~---ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~ 89 (275)
T 3mq0_A 35 ILDLVAG--SPRDLTAAELTRFLD------LP---KSSAHGLLAVMTELDLLARSADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHH--CSSCEEHHHHHHHHT------CC-----CHHHHHHHHHHTTSEEECTTSEEEECTHH
T ss_pred HHHHHhh--CCCCCCHHHHHHHHC------cC---HHHHHHHHHHHHHCCCEEECCCCcEEehHHH
Confidence 4444443 245788888887663 33 334778899999999999975 689998764
No 92
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=28.34 E-value=70 Score=22.96 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCccccc
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAAG 124 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~Kk 124 (192)
.|.|...|..++. +. ...+...|++|+..|-|.+... .+.|.+.+..
T Consensus 54 ~~~~~~eLa~~l~------~~---~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 107 (149)
T 4hbl_A 54 NPQTLNSIGRHLD------LS---SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQ 107 (149)
T ss_dssp SSEEHHHHHHHHT------CC---HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHH
T ss_pred CCCCHHHHHHHHC------CC---HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHH
Confidence 4566666666651 11 4568999999999999998642 4556655543
No 93
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=28.00 E-value=49 Score=23.79 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 57 MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.|++.|-. ..|.|...|...+....+ +. ..-|...|.+|+++|.|.+..
T Consensus 39 ~VL~~L~~---~~~~t~~eL~~~l~~~~~--~s---~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 39 IVMRVIWS---LGEARVDEIYAQIPQELE--WS---LATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH---HSCEEHHHHHHTCCGGGC--CC---HHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHh---CCCCCHHHHHHHHhcccC--CC---HhhHHHHHHHHHHCCCEEEEe
Confidence 45555544 235666666666544321 11 456899999999999999865
No 94
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=27.73 E-value=88 Score=20.63 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
+.|...|...+ + ++ ...+...|++|++.|.|.+..
T Consensus 34 ~~s~~ela~~l----~--is---~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 34 GMRVSEIAREL----D--LS---ARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CBCHHHHHHHH----T--CC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHH----C--CC---HHHHHHHHHHHHHCCCEEEEe
Confidence 45555555555 1 22 456999999999999998754
No 95
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.70 E-value=87 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCceEecCC-------ceecCccccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAAG 124 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~Kk 124 (192)
...+...|++|++.|-|.+... .+.|.+.+..
T Consensus 59 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 97 (145)
T 3g3z_A 59 KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKA 97 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHH
Confidence 4468999999999999998542 4666666544
No 96
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=27.29 E-value=89 Score=22.87 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC
Q 029524 58 ITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 58 I~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
|.+.|..-.=+.|.-..++.. |.+.|++. +.-++.+|..|...|.|+...|
T Consensus 20 l~~~I~~g~~~~G~~lPse~~-La~~~~vS-----r~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 20 IKNEVATDVLSANDQLPSVRE-TALQEKIN-----PNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp HHHHHHTTSSCTTCEECCHHH-HHHHHTCC-----HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhCCCCCCCcCcCHHH-HHHHHCcC-----HHHHHHHHHHHHHCCCEEEecC
Confidence 344444322244543333332 44555532 5679999999999999998765
No 97
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=27.15 E-value=1.5e+02 Score=20.11 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCceEecC-C---ceecCcc
Q 029524 95 ILAVQLKHFAAKGNLIKIR-A---SYKLSEA 121 (192)
Q Consensus 95 lLk~aLKk~Ve~G~LVqvK-G---SFKLs~~ 121 (192)
.|.++|+.|.+.|.|.... | .|.|...
T Consensus 52 tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 52 TLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred HHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 5899999999999998754 3 6777764
No 98
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.09 E-value=1.9e+02 Score=21.23 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCceEecCCceecC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRASYKLS 119 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGSFKLs 119 (192)
+..|++.|+.+.+.|.|....|.+.|-
T Consensus 181 r~tvsR~l~~L~~~g~I~~~~~~i~i~ 207 (210)
T 3ryp_A 181 RETVGRILKMLEDQNLISAHGKTIVVY 207 (210)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCcEEeCCCEEEEE
Confidence 556999999999999999888877664
No 99
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=26.83 E-value=1.6e+02 Score=22.51 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC----C-----ceecCccccc
Q 029524 56 QMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR----A-----SYKLSEAAAG 124 (192)
Q Consensus 56 eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK----G-----SFKLs~~~Kk 124 (192)
-+|+..|.. ...+-+.|.+.|...++.....+ ...|...|++|.+.|.|.... | .|.|.+.+..
T Consensus 5 ~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~s-~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 5 HVILTVLST----RDATGYDITKEFSASIGYFWKAS-HQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCCC-HHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred HHHHHHHhc----CCCCHHHHHHHHHHHhCCccCCC-cCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 345544432 45888999999987654211222 467999999999999998532 1 6888888765
No 100
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=26.74 E-value=1.2e+02 Score=20.98 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
.|.|...|..++. +. ...+...|++|++.|.|.+... .|.|.+.+.
T Consensus 42 ~~~~~~ela~~l~------~s---~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~ 94 (138)
T 3bpv_A 42 PGIKQDELATFFH------VD---KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGE 94 (138)
T ss_dssp TTCBHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred CCCCHHHHHHHHC------CC---HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHH
Confidence 4566666666651 11 4568999999999999998531 355655554
No 101
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=26.65 E-value=78 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCceEecC--CceecCccc
Q 029524 96 LAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 96 Lk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
|...|...+.+|.-|... |+|.+..-.
T Consensus 28 ~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (90)
T 1mul_A 28 TLAAITESLKEGDAVQLVGFGTFKVNHRA 56 (90)
T ss_dssp HHHHHHHHHHTTCCEEETTTEEEEEEEEC
T ss_pred HHHHHHHHHhCCCeEEEcCCeEEEEEEec
Confidence 444555556677777776 599887643
No 102
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.37 E-value=94 Score=21.83 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 68 KSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 68 R~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
..|.+...|..++ + +. ...+...|++|++.|.|.+... .|.|.+.+.
T Consensus 48 ~~~~~~~~la~~l----~--i~---~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 101 (147)
T 2hr3_A 48 GGDVTPSELAAAE----R--MR---SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGR 101 (147)
T ss_dssp TSCBCHHHHHHHT----T--CC---HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHH
T ss_pred CCCCCHHHHHHHh----C--CC---hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHH
Confidence 3456666666554 1 11 4568999999999999998642 355665554
No 103
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=26.22 E-value=89 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--CceecCccccc
Q 029524 79 YMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--ASYKLSEAAAG 124 (192)
Q Consensus 79 YIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--GSFKLs~~~Kk 124 (192)
.|.+.++ ++. .+|.+.|..|...|.|..+. |-|.|.....+
T Consensus 35 ~iA~~~~--i~~---~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~ 77 (149)
T 1ylf_A 35 YMAESVN--TNP---VVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHE 77 (149)
T ss_dssp HHHHHHT--SCH---HHHHHHHHHHHHTTSEEEC---CCEEESSCGGG
T ss_pred HHHHHHC--cCH---HHHHHHHHHHHHCCcEEEccCCCceEeCCChhh
Confidence 4555665 443 45899999999999998775 68999877654
No 104
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.99 E-value=42 Score=21.88 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHcCCCCCCcHHHHHHHHHHhCC
Q 029524 63 MALQDKSGSSPYAIAKYMEEKHK 85 (192)
Q Consensus 63 ~aLkeR~GSS~~AIkKYIe~~Y~ 85 (192)
.+|.++-|.|+.+|.+|....+.
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHhCcCHHHHHHHHcCCCC
Confidence 44667899999999999977654
No 105
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=25.94 E-value=71 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCceEecC-Cc---eecCccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIR-AS---YKLSEAA 122 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvK-GS---FKLs~~~ 122 (192)
...|.++|+.|.+.|.|.... |+ |.|...+
T Consensus 48 ~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~ 81 (114)
T 2oqg_A 48 RQAIAKHLNALQACGLVESVKVGREIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHHHHHHHHHHHHCCCeeEEecCCEEEEEechHH
Confidence 456999999999999998754 43 7777665
No 106
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=25.69 E-value=53 Score=21.76 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC----C---ceecCcccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR----A---SYKLSEAAA 123 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK----G---SFKLs~~~K 123 (192)
+.|...|...+ + ++ ...|..+|++|.+.|.|.... | .|.|.+.+.
T Consensus 30 ~~~~~ela~~l----~--is---~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 30 KAPFSQIQKVL----D--LT---PGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp EEEHHHHHHHT----T--CC---HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred CcCHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 46666666655 2 22 446899999999999998643 2 577776553
No 107
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=25.24 E-value=79 Score=22.75 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCceEecCC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
..+|+..|..|++++-|.+..+
T Consensus 59 ~~~IKk~IE~LIekeYleR~~~ 80 (88)
T 3o2p_E 59 VSMVKRAIDSLIQKGYLQRGDD 80 (88)
T ss_dssp HHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHHHHHHHHHhhhHHhcCCC
Confidence 4568889999999999988754
No 108
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=25.19 E-value=1.2e+02 Score=21.77 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCceEecC-C---ceecCccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIR-A---SYKLSEAA 122 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvK-G---SFKLs~~~ 122 (192)
...|.++|+.|.+.|.|.... | .|.|....
T Consensus 70 ~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 103 (122)
T 1u2w_A 70 IANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp HHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence 456899999999999998754 4 57877654
No 109
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=25.10 E-value=1.7e+02 Score=20.96 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=25.9
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC--CceecCccc
Q 029524 67 DKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 67 eR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
++.|.|...+...|.. |...|...+.+|.-|... |+|.+..-.
T Consensus 25 ~~~~lsk~~~~~vl~~-------------~~~~i~~~L~~G~~V~l~gfGtF~v~~r~ 69 (108)
T 2np2_A 25 NNLKLEKKYIRLVIDA-------------FFEELKSNLCSNNVIEFRSFGTFEVRKRK 69 (108)
T ss_dssp TTCCCCHHHHHHHHHH-------------HHHHHHHHHHTTCEEEETTTEEEEEEEEC
T ss_pred hhcCCCHHHHHHHHHH-------------HHHHHHHHHHCCCeEEecCcEEEEEEEec
Confidence 4555665555554433 344555556677777777 588887643
No 110
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=24.86 E-value=1.2e+02 Score=20.18 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHhCC-CCCch----hHHHHHHHHHHHHHhcCceE
Q 029524 71 SSPYAIAKYMEEKHK-DELPA----NFRKILAVQLKHFAAKGNLI 110 (192)
Q Consensus 71 SS~~AIkKYIe~~Y~-~~lp~----nf~~lLk~aLKk~Ve~G~LV 110 (192)
.+...|..|+..-.. .++.. +.-..|+..++-++..|.|.
T Consensus 52 it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~lr~~~~~a~~~~~i~ 96 (112)
T 2key_A 52 LTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAIKKGYME 96 (112)
T ss_dssp CCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHCCCcc
Confidence 567777777764221 11222 23456888888889988775
No 111
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=24.63 E-value=1.7e+02 Score=20.80 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 66 QDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 66 keR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
.+..|.+...|..++ + ++ ...+...|++|++.|.|.+... .|.|.+.+.
T Consensus 53 ~~~~~~t~~ela~~l----~--i~---~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~ 108 (155)
T 3cdh_A 53 VDNDAMMITRLAKLS----L--ME---QSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGR 108 (155)
T ss_dssp SSCSCBCHHHHHHHT----T--CC---HHHHHHHHHHHHHTTSEEECC------CCCEEECHHHH
T ss_pred HHCCCcCHHHHHHHH----C--CC---HHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHH
Confidence 334455555555543 1 11 4568999999999999997542 356666554
No 112
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.62 E-value=21 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=12.5
Q ss_pred HcCCCCCCcHHHHHHHHHH
Q 029524 64 ALQDKSGSSPYAIAKYMEE 82 (192)
Q Consensus 64 aLkeR~GSS~~AIkKYIe~ 82 (192)
++.+.-|+|+.+|.+||..
T Consensus 26 ~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 26 QLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3445667778888777754
No 113
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=24.21 E-value=1e+02 Score=24.82 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=35.7
Q ss_pred HHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEe
Q 029524 63 MALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIK 111 (192)
Q Consensus 63 ~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVq 111 (192)
..+.+..|.+...|..|+. ++...+......-|...+..+.+.|.|-+
T Consensus 227 ~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~gli~~ 274 (291)
T 2nxo_A 227 EQAARWEAFDEDTLAKYFT-TLDFRFGAPQLEAVTEFARRVGPTTGFPA 274 (291)
T ss_dssp HHHHTTSSSCHHHHHHHHH-HSBCCCSHHHHHHHHHHHHHHSTTTTSCT
T ss_pred HHHHHHcCCCHHHHHHHHH-hCccCCCHHHHHHHHHHHHHHHHCCCCCC
Confidence 3455678999999999995 44434666667778888888888898754
No 114
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=24.18 E-value=1.8e+02 Score=21.76 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCceEecCCc-eecC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRAS-YKLS 119 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKGS-FKLs 119 (192)
+..|++.|+.+.+.|.|....|. +.|.
T Consensus 177 r~tvsR~l~~L~~~g~I~~~~~~i~~i~ 204 (222)
T 1ft9_A 177 RQTTSTALNSLIKEGYISRQGRGHYTIP 204 (222)
T ss_dssp HHHHHHHHHHHHHTTSSEECSTTCEECS
T ss_pred HHHHHHHHHHHHHCCcEEEcCCceEEEc
Confidence 55699999999999999888777 6663
No 115
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=24.15 E-value=1.4e+02 Score=23.23 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC
Q 029524 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 57 MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
.|.+.|....=+-|.-.. -.-|.+.|++. +.-|+.+|+.|...|.|+...|
T Consensus 24 ~l~~~I~~g~l~pG~~L~--E~~La~~lgVS-----RtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 24 GIMSGLELGTFVPGQRLV--ETDLVAHFGVG-----RNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp HHHHHHHHTSSCTTCEEC--HHHHHHHHTCC-----HHHHHHHHHHHHHTTSEEECST
T ss_pred HHHHHHHhCCCCCCCccC--HHHHHHHHCCC-----HHHHHHHHHHHHHCCCEEEecC
Confidence 355555554447777666 55677777753 6679999999999999987553
No 116
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.68 E-value=1.6e+02 Score=23.61 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCCHHH---HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC--ceecC
Q 029524 51 HPPYFQ---MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA--SYKLS 119 (192)
Q Consensus 51 HP~Y~e---MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG--SFKLs 119 (192)
.|.|.+ .|.+.|..-.=..|.-..+. .-|.+.|++. +.-++.+|..|+..|.|....| +|-..
T Consensus 8 ~~~~~~i~~~l~~~I~~g~~~~g~~lPse-~~La~~~~vS-----r~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 75 (236)
T 3edp_A 8 KPLFEVIASKIKDSINRDEYKTGMLMPNE-TALQEIYSSS-----RTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (236)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCCC--CCH-HHHHHHTTCC-----HHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcCCCcCH-HHHHHHHCcC-----HHHHHHHHHHHHHCCCEEEECCceEEEcc
Confidence 344543 34444443222455444343 3455566642 5679999999999999998765 55444
No 117
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=23.65 E-value=93 Score=22.46 Aligned_cols=57 Identities=7% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHH-cCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC
Q 029524 57 MITEALMA-LQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA 114 (192)
Q Consensus 57 MI~EAI~a-LkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG 114 (192)
.|..||.. ++.|+-.+...+...+...-..-+.+. ..+|+..|..|++++-|.+..|
T Consensus 26 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~-~~~IKk~IE~LIereYleR~~~ 83 (92)
T 1iuy_A 26 EIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS-PVVIKKRIEGLIEREYLARTPE 83 (92)
T ss_dssp HHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCC-HHHHHHHHHHHHHTTSEEECSS
T ss_pred HeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhhhhhhhcCCC
Confidence 35566543 466666777776666665432111122 3478899999999999998764
No 118
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=23.33 E-value=1.3e+02 Score=22.41 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC---ceecCccccc
Q 029524 71 SSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA---SYKLSEAAAG 124 (192)
Q Consensus 71 SS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG---SFKLs~~~Kk 124 (192)
.|...| .+.++ ++. .+|.+.|..|...|.|.-+.| -|.|.....+
T Consensus 29 ~s~~~I----A~~~~--i~~---~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (143)
T 3t8r_A 29 ISLKSI----AEENN--LSD---LYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEE 76 (143)
T ss_dssp EEHHHH----HHHTT--CCH---HHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGG
T ss_pred cCHHHH----HHHHC--cCH---HHHHHHHHHHHHCCEEEecCCCCCCeeecCCccc
Confidence 565554 45555 454 468999999999999987764 6999876654
No 119
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=23.14 E-value=2.3e+02 Score=21.29 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-----C----ceecCccc
Q 029524 52 PPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-----A----SYKLSEAA 122 (192)
Q Consensus 52 P~Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-----G----SFKLs~~~ 122 (192)
-.+.-+|+..|.. ...+...|.+.|.+.+...+.-+ ...|...|++|.+.|.|.... | .|.|.+.+
T Consensus 40 g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~is-~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G 114 (145)
T 1xma_A 40 GYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVIK-ETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEG 114 (145)
T ss_dssp GTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCCC-HHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHH
T ss_pred CcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCcC-hhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHH
Confidence 3466667766643 34788899999987653211111 457999999999999998642 2 57887776
Q ss_pred cc
Q 029524 123 AG 124 (192)
Q Consensus 123 Kk 124 (192)
..
T Consensus 115 ~~ 116 (145)
T 1xma_A 115 IK 116 (145)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 120
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=23.06 E-value=1.8e+02 Score=20.30 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCceEecC-C---ceecCccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIR-A---SYKLSEAA 122 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvK-G---SFKLs~~~ 122 (192)
...|..+|+.|.+.|.|.... | .|.|....
T Consensus 52 ~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 85 (108)
T 2kko_A 52 LTTASANLQALKSGGLVEARREGTRQYYRIAGED 85 (108)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 456899999999999998653 4 47776543
No 121
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=22.75 E-value=1.6e+02 Score=20.56 Aligned_cols=58 Identities=10% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
+.-+|+..|. + .+.+...|..++. + +. ...|...|++|.+.|.|.+... .|.|.+.+.
T Consensus 23 ~~~~IL~~L~---~-~~~~~~eLa~~l~---~--is---~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 23 WKLSLMDELF---Q-GTKRNGELMRALD---G--IT---QRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp THHHHHHHHH---H-SCBCHHHHHHHST---T--CC---HHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred cHHHHHHHHH---h-CCCCHHHHHHHhc---c--CC---HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 4444555553 1 3566666666552 1 22 4569999999999999997642 577777664
No 122
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.45 E-value=1.4e+02 Score=21.97 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCceEecCC-------ceecCccccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAAG 124 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~Kk 124 (192)
...+...|++|++.|.|.+... .+.|.+.+..
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 120 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEP 120 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHH
Confidence 4568999999999999998652 4556665543
No 123
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=22.40 E-value=92 Score=21.92 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
...+...|++|++.|.|.+... .+.|.+.+.
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~ 102 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGR 102 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHH
Confidence 4568999999999999998642 355555554
No 124
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=22.20 E-value=67 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 95 ILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 95 lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
.+...|++|++.|.|.+... .+.|.+.+.
T Consensus 78 tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~ 113 (160)
T 3boq_A 78 NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGL 113 (160)
T ss_dssp CHHHHHHHHHHHTSEEEC--------CEEEECHHHH
T ss_pred hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHH
Confidence 37889999999999998642 355665554
No 125
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=21.99 E-value=83 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCceEecCC--ceecC
Q 029524 93 RKILAVQLKHFAAKGNLIKIRA--SYKLS 119 (192)
Q Consensus 93 ~~lLk~aLKk~Ve~G~LVqvKG--SFKLs 119 (192)
+.-++.+|..|+..|.|.. .| +|-..
T Consensus 50 r~tvr~Al~~L~~~G~i~~-~g~Gt~V~~ 77 (248)
T 3f8m_A 50 RETVRQALRELLIDGRVER-RGRTTVVAR 77 (248)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEe-CCCEEEEcc
Confidence 5679999999999999999 75 55443
No 126
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=21.83 E-value=83 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCceEecC--CceecCccc
Q 029524 96 LAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 96 Lk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
|...|...+.+|.-|... |+|.+....
T Consensus 28 ~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (90)
T 1b8z_A 28 ILETITEALAKGEKVQIVGFGSFEVRKAA 56 (90)
T ss_dssp HHHHHHHHHHTTCCEEETTTEEEEC----
T ss_pred HHHHHHHHHhCCCEEEECCCEEEEEEEEc
Confidence 444555556677777776 599887654
No 127
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=21.80 E-value=1.2e+02 Score=24.12 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHcCCCCCCcH--HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-ceecCccccc
Q 029524 53 PYFQMITEALMALQDKSGSSP--YAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-SYKLSEAAAG 124 (192)
Q Consensus 53 ~Y~eMI~EAI~aLkeR~GSS~--~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-SFKLs~~~Kk 124 (192)
.-.++++.+|-.|.+ .|.+. ..|..++ + +. ...+...|++|.+.|.|.+..+ .+.|.+.+..
T Consensus 6 ~~~e~~L~~L~~l~~-~~~~~~~~~La~~l----~--vs---~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~ 70 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEE-EGVTPLRARIAERL----D--QS---GPTVSQTVSRMERDGLLRVAGDRHLELTEKGRA 70 (230)
T ss_dssp SHHHHHHHHHHHHHH-HTSCCCHHHHHHHH----T--CC---HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHH
T ss_pred HHHHHHHHHHHHHhh-cCCCCcHHHHHHHH----C--cC---HHHHHHHHHHHHHCCCEEEeCCccEEECHHHHH
Confidence 345677888877765 36666 7777766 3 22 4468999999999999998664 5777776654
No 128
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=21.78 E-value=2.2e+02 Score=23.26 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCCceecCccccc
Q 029524 56 QMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLSEAAAG 124 (192)
Q Consensus 56 eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKGSFKLs~~~Kk 124 (192)
+..+++|-.|+ ..+++..|+.++. +. ...++..|++|.+.|.|...+|-..|.+.+.+
T Consensus 18 EdYLk~I~~L~--~~V~~~~LA~~Lg------vS---~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~ 75 (200)
T 2p8t_A 18 EDVLAVIFLLK--EPLGRKQISERLE------LG---EGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKE 75 (200)
T ss_dssp HHHHHHHHHTT--SCBCHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEC--CEEECHHHHH
T ss_pred HHHHHHHHHHc--CCccHHHHHHHhC------CC---HHHHHHHHHHHHHCCCEEEeCCCeEECHHHHH
Confidence 44567777784 5588999998886 22 44689999999999999887777777776654
No 129
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=21.72 E-value=79 Score=23.30 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-CceecCcccc
Q 029524 54 YFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-ASYKLSEAAA 123 (192)
Q Consensus 54 Y~eMI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-GSFKLs~~~K 123 (192)
...-|++.|.. ....|...|...+ +++ +. ...++.+|+.|.+.|.|.... |.|.|.+.+.
T Consensus 14 ~d~~IL~~L~~---~g~~s~~eLA~~l--~~g--iS---~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~ 74 (111)
T 3b73_A 14 WDDRILEIIHE---EGNGSPKELEDRD--EIR--IS---KSSVSRRLKKLADHDLLQPLANGVYVITEEGE 74 (111)
T ss_dssp HHHHHHHHHHH---HSCBCHHHHHTST--TCC--SC---HHHHHHHHHHHHHTTSEEECSTTCEEECHHHH
T ss_pred HHHHHHHHHHH---cCCCCHHHHHHHH--hcC--CC---HHHHHHHHHHHHHCCCEEecCCceEEECchHH
Confidence 34445555433 2357777776633 112 22 456999999999999999763 5799988764
No 130
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=21.39 E-value=1.4e+02 Score=20.89 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
.|.|...|..++. ++ ...+...|++|++.|.|.+..
T Consensus 42 ~~~t~~~la~~l~------~s---~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 42 PGIIQEKIAELIK------VD---RTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp TTEEHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcCHHHHHHHHC------CC---HhHHHHHHHHHHHCCCEEeec
Confidence 3566666666651 11 456899999999999999864
No 131
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=21.25 E-value=1.3e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-ceecCcccc
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-SYKLSEAAA 123 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-SFKLs~~~K 123 (192)
.+.|...|...+ ++ . ...|..+|++|...|.|....| .+.|...+.
T Consensus 53 ~~~~~~~la~~l----~v--s---~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~ 99 (155)
T 2h09_A 53 GEARQVDMAARL----GV--S---QPTVAKMLKRLATMGLIEMIPWRGVFLTAEGE 99 (155)
T ss_dssp SCCCHHHHHHHH----TS--C---HHHHHHHHHHHHHTTCEEEETTTEEEECHHHH
T ss_pred CCcCHHHHHHHh----Cc--C---HHHHHHHHHHHHHCCCEEEecCCceEEChhHH
Confidence 456665554443 32 2 4568999999999999887654 566766554
No 132
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=21.19 E-value=84 Score=22.18 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCceEecC--CceecCcc
Q 029524 96 LAVQLKHFAAKGNLIKIR--ASYKLSEA 121 (192)
Q Consensus 96 Lk~aLKk~Ve~G~LVqvK--GSFKLs~~ 121 (192)
|...|...+.+|.-|... |+|.+..-
T Consensus 30 ~~~~i~~~L~~G~~V~l~gfG~F~v~~r 57 (99)
T 1owf_A 30 FFEEIRRALENGEQVKLSGFGNFDLRDK 57 (99)
T ss_dssp HHHHHHHHHHTTCCEEETTTEEEEEEEE
T ss_pred HHHHHHHHHhCCCeEEecCCEEEEEEEe
Confidence 445556666777777776 58888654
No 133
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=21.15 E-value=1.2e+02 Score=20.45 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=31.7
Q ss_pred HHHHHHcCCCC-CCcHHHHHHHHHHhCCCCCchhHHHH-HHHHHHHHHhcCceEe
Q 029524 59 TEALMALQDKS-GSSPYAIAKYMEEKHKDELPANFRKI-LAVQLKHFAAKGNLIK 111 (192)
Q Consensus 59 ~EAI~aLkeR~-GSS~~AIkKYIe~~Y~~~lp~nf~~l-Lk~aLKk~Ve~G~LVq 111 (192)
...|..|.+.. |.|...|..++. ++ ... +...|++|++.|.|..
T Consensus 18 l~~L~~l~~~~~~~t~~eLa~~l~------is---~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 18 LPTLLEFEKKGYEPSLAEIVKASG------VS---EKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHC------CC---HHHHHTTHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHC------CC---chHHHHHHHHHHHHCCCeec
Confidence 34445555554 799999988873 11 445 8899999999999983
No 134
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.95 E-value=69 Score=22.45 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCceEecC--CceecCcc
Q 029524 96 LAVQLKHFAAKGNLIKIR--ASYKLSEA 121 (192)
Q Consensus 96 Lk~aLKk~Ve~G~LVqvK--GSFKLs~~ 121 (192)
|...|...+.+|.-|... |+|.+..-
T Consensus 31 ~~~~i~~~L~~g~~V~l~gfG~F~v~~r 58 (93)
T 3rhi_A 31 VVESITNTLAAGEKVQLIGFGTFEVRER 58 (93)
T ss_dssp HHHHHHHHHHTTCCEEETTTEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEcCCEEEEEEEE
Confidence 334455555677667766 58887654
No 135
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=20.94 E-value=1.5e+02 Score=20.82 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
|.+...|..++. ++ ...+...|++|++.|.|.+... .|.|.+.+.
T Consensus 54 ~~t~~ela~~l~------~~---~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~ 105 (152)
T 3bj6_A 54 GATAPQLGAALQ------MK---RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGE 105 (152)
T ss_dssp TEEHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHH
T ss_pred CCCHHHHHHHHC------CC---HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhH
Confidence 556665555541 11 4568999999999999998642 455555543
No 136
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.67 E-value=91 Score=22.14 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
|.|...|..++ + +. ...+...|++|++.|.|.+..+ .|.|...+.
T Consensus 51 ~~t~~ela~~l----~--~s---~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 102 (155)
T 1s3j_A 51 SLKVSEIAERM----E--VK---PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGD 102 (155)
T ss_dssp EEEHHHHHHHH----T--SC---HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHH
T ss_pred CCCHHHHHHHH----C--CC---HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHH
Confidence 45555555554 1 11 4568999999999999998642 355655544
No 137
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=20.61 E-value=1.4e+02 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEe
Q 029524 69 SGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIK 111 (192)
Q Consensus 69 ~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVq 111 (192)
.|.|...|..++. ++ ...+...|++|++.|.|.+
T Consensus 54 ~~~t~~eLa~~l~------~~---~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 54 PGISVADLTKRLI------IT---GSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TTEEHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHC------CC---HHHHHHHHHHHHHCCCEEe
Confidence 4566666666661 11 4468999999999999998
No 138
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=20.54 E-value=82 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCceEecCC-------ceecCcccc
Q 029524 95 ILAVQLKHFAAKGNLIKIRA-------SYKLSEAAA 123 (192)
Q Consensus 95 lLk~aLKk~Ve~G~LVqvKG-------SFKLs~~~K 123 (192)
.+...|++|++.|.|.+... .+.|.+.+.
T Consensus 76 tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~ 111 (162)
T 3k0l_A 76 SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGL 111 (162)
T ss_dssp GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHH
T ss_pred HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHH
Confidence 48899999999999998642 355555554
No 139
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.21 E-value=1.6e+02 Score=20.60 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-------CceecCcccc
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-------ASYKLSEAAA 123 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-------GSFKLs~~~K 123 (192)
|.|...|..++. +. ...+...|++|++.|-|.+.. -.+.|.+.+.
T Consensus 54 ~~t~~ela~~l~------~~---~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~ 105 (148)
T 3nrv_A 54 DCSVQKISDILG------LD---KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQ 105 (148)
T ss_dssp SBCHHHHHHHHT------CC---HHHHHHHHHHHHHTTSEEC---------CCBEECHHHH
T ss_pred CCCHHHHHHHHC------CC---HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHH
Confidence 566666665552 11 456899999999999999863 1455655554
No 140
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=20.13 E-value=92 Score=21.72 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCceEecC--CceecCccc
Q 029524 96 LAVQLKHFAAKGNLIKIR--ASYKLSEAA 122 (192)
Q Consensus 96 Lk~aLKk~Ve~G~LVqvK--GSFKLs~~~ 122 (192)
|...|...+.+|.-|+.. |+|.+..-.
T Consensus 28 ~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (94)
T 1p71_A 28 ALETIIEAVSSGDKVTLVGFGSFESRERK 56 (94)
T ss_dssp HHHHHHHHHHTTCCEEETTTEEEEEEEEC
T ss_pred HHHHHHHHHhCCCeEEecCCEEEEEEEEc
Confidence 444555666777777776 588887643
No 141
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=20.10 E-value=1.2e+02 Score=27.99 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHcCCC---CC---CcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC-------Cceec
Q 029524 52 PPYFQMITEALMALQDK---SG---SSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR-------ASYKL 118 (192)
Q Consensus 52 P~Y~eMI~EAI~aLkeR---~G---SS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK-------GSFKL 118 (192)
|+-.-..+-||..++.. .+ ....-|..|+...|.. ...+...+.+++|+.||+.+.|.+.. +-|+|
T Consensus 25 ~~erlaFL~AIa~~~~er~d~e~~E~~L~d~Fr~Vs~~f~q-~~et~~~RANNaIndlV~QRLLsRf~se~~dg~~iYRL 103 (440)
T 3euh_A 25 PVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQ-TSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRL 103 (440)
T ss_dssp CHHHHHHHHHHHHHTCC-----EEHHHHHHHHHHHHHHTCC-CSTTHHHHHHHHHHHHHHTTSEEEEECTTSTTSEEEEE
T ss_pred CHHHHHHHHHHHHhcchhhhcccChHHHHHHHHHHHhhhcc-CccchHHHHHHHHHHHHHHHHHHhcccccccccceeee
Confidence 33344466788888763 12 3456789999999984 45677889999999999999999865 37888
Q ss_pred Ccc
Q 029524 119 SEA 121 (192)
Q Consensus 119 s~~ 121 (192)
.+=
T Consensus 104 T~L 106 (440)
T 3euh_A 104 TPL 106 (440)
T ss_dssp CHH
T ss_pred cHh
Confidence 754
No 142
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=20.08 E-value=1.2e+02 Score=21.33 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC----C----ceecCccccc
Q 029524 57 MITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR----A----SYKLSEAAAG 124 (192)
Q Consensus 57 MI~EAI~aLkeR~GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK----G----SFKLs~~~Kk 124 (192)
+|+..|.. ...+...|.+.|.+.+. +. ...|...|++|.+.|.|.... | .|.|.+.+..
T Consensus 13 ~IL~~L~~----~~~~gyel~~~l~~~~~--i~---~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 13 LILAIVSK----HDSYGYDISQTIKLIAS--IK---ESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHH----SCEEHHHHHHHHTTTCC--CC---HHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHc----CCCcHHHHHHHHHHHhC--CC---cChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 44444432 34778899999988554 32 446999999999999998642 3 4778777654
No 143
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=20.02 E-value=56 Score=22.98 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCceEecC
Q 029524 70 GSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIR 113 (192)
Q Consensus 70 GSS~~AIkKYIe~~Y~~~lp~nf~~lLk~aLKk~Ve~G~LVqvK 113 (192)
|.|...|..++.- + ...+...|++|++.|.|.+..
T Consensus 51 ~~~~~ela~~l~~------~---~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELAL------D---TGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTC------C---TTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCC------C---hhhHHHHHHHHHHCCCEEeec
Confidence 4566555555521 1 234888999999999999754
Done!