BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029525
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2
Length = 387
Score = 299 bits (766), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 140/191 (73%), Positives = 164/191 (85%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
S SS S+ T E L+R RIL+SKLYFD+P+ K+ +IYS YDISF+GIEKLHPFDSSKW
Sbjct: 41 SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
GR+C+FL S+GFL++ IVEPLEASK DLLVVHSE+YL SL+SS V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160
Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220
Query: 182 HYAFVQLNISR 192
H+AF++L ISR
Sbjct: 221 HFAFLRLRISR 231
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1
Length = 347
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISR 192
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 174
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2
Length = 347
Score = 219 bits (558), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L + +VE
Sbjct: 4 TTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISR 192
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 174
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1
Length = 347
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 23 SSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEP 82
+++LY +P + P++YSP Y+I+F+G+EKLHPFD+ KWG++ FL E L +VE
Sbjct: 4 ATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEA 63
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTIL 142
EAS+EDLLVVH+ YL L+ S V+ I E+PPV PN LVQRKVL P R Q GGTI+
Sbjct: 64 REASEEDLLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIM 123
Query: 143 AAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL-NISR 192
A KLA ERGWAINVGGGFHHCS+D GGGFCAYADI+L I + F ++ ISR
Sbjct: 124 AGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISR 174
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6)
GN=SYNPCC7002_A1628 PE=3 SV=2
Length = 300
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 35 LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
P++Y PDY I + H F K+ + L +G + + +P + L +VH
Sbjct: 3 FPVVYHPDY---VTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVH 59
Query: 95 SESYLKSL---QSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERG 151
Y+ + +P I +P + +VQR + VGGTIL A+LA E G
Sbjct: 60 EPDYVTAYCQGTLTPKAQRRIGLP----WSAGVVQRTL-----TAVGGTILTAQLALEHG 110
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLC 180
A N GG HH G GFC D+++
Sbjct: 111 LACNTAGGTHHAFPGYGSGFCILNDLAIA 139
>sp|P39067|ACUC_BACSU Acetoin utilization protein AcuC OS=Bacillus subtilis (strain 168)
GN=acuC PE=3 SV=1
Length = 387
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 18/157 (11%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP Y E HPF+ + L + D IV P AS+E+L +VH++
Sbjct: 6 FIYSPSYQTYMFHQE--HPFNQQRVLLTYDLLKTINAFDDGDIVTPRLASEEELSLVHTD 63
Query: 97 SYLKS--------LQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--L 146
Y+++ L + S + +F +L VGGT+ AA +
Sbjct: 64 DYIQAVKLAGAGKLPAEEGESYGLGTEDTPVFAGMHEAASLL------VGGTLTAADWVM 117
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183
+ + A N+GGG HH GFC Y D ++ I Y
Sbjct: 118 SGQALHAANLGGGLHHGFRGRASGFCIYNDSAVAIQY 154
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
+ N + + R VGG + A L G A+N +GGG HH
Sbjct: 84 DEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKALNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN 164
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 67 FLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCL 124
+ + G L + +V+P AS E++ H++SYL+ L S + E L +C
Sbjct: 36 LIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLEYGLGYDCP 95
Query: 125 VQRKVLYPFRKQVGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ + Y + VGG L A +A + AIN GG+HH DE GFC D L I
Sbjct: 96 ITEGI-YDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGI 154
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ-SSPNVSIII 112
HPF+ + + L G L ++ I+ P A+ ++L ++H+ Y+++++ +S +
Sbjct: 25 HPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSLIHAYDYIQAIRHASHGILSEN 84
Query: 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAIN---VGGGFHHCSADEGG 169
E L +Q ++++ ++ G L G N +GGG HH
Sbjct: 85 EAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSGTLTNGCHLGGGLHHSLPGRAN 144
Query: 170 GFCAYADISLCIHYAFVQLN 189
GFC Y D+++ I Y + N
Sbjct: 145 GFCIYNDVAITISYLMQKYN 164
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN 164
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN 164
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+I+SP YD L + H +S + I + + S + VEP A +D+L+VHS
Sbjct: 3 IIHSPSYD---LHNHEGHVENSGRTRAILRAIESSDLSPR--FVEPGMAGIDDILMVHSS 57
Query: 97 SYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINV 156
++++ L+ + L + + + R GG +LAA+ A GW+ ++
Sbjct: 58 THVEYLE------VFAGRGGGWLDYDTYMTPESFSVARLSAGGAMLAAEEALRDGWSYSL 111
Query: 157 G---GGFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192
G G HH + D GFC + +I++ I +A L +SR
Sbjct: 112 GRPPG--HHATYDRSMGFCIFNNIAIAIEHARRNLGVSR 148
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYLAKEYN 164
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS ED+
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ ++N GG HH E GFC DI L I
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN 164
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
HPF+ + + L + L IV+P A+ ++L+++H Y+++++ + + II E
Sbjct: 25 HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLIHKYDYVEAIKHASH-GIISE 83
Query: 114 VPPVALFPNCLVQRKVLYPFRKQ---VGGTILAAKLAKERGWAIN---VGGGFHHCSADE 167
N + + R VGG + A L G +N +GGG HH
Sbjct: 84 DEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMS-GKVLNGCHLGGGLHHAQPGR 142
Query: 168 GGGFCAYADISLCIHYAFVQLN 189
GFC Y DI++ Y + N
Sbjct: 143 ASGFCIYNDIAITAQYIAKEYN 164
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 37 LIYSPDYDISFLGIEK-LHPFDSSKWGRICQFLSSEGFLDKNCIVEPLE--ASKEDLLVV 93
LIY + D + +E+ HP ++ RI + L G L+K C+ E A+ E++ +V
Sbjct: 428 LIYFNEGDDAHFDLEEDNHPEKPARTRRILKTLRESGVLEK-CVDRNCERIATNEEIRLV 486
Query: 94 HSESYLKSLQSSPNV-SIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-----KLA 147
H++ L+ L+++ + + F + + R L RK VG + + K A
Sbjct: 487 HTKKMLEHLRTTETMKDEELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDA 546
Query: 148 KERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184
+R + V HH SA + GFC + ++++ YA
Sbjct: 547 GQRNALVIVRPPGHHASASKSSGFCIFNNVAVAAKYA 583
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +A+ E++
Sbjct: 8 KRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 128 QTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 55 PFDSSKWGRIC---QFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQ--SSPNVS 109
P+ K R+C + + G K + + A ED+L HSE Y+ L+ + N++
Sbjct: 30 PYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENIN 89
Query: 110 IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW--AINVGGGFHHCSADE 167
+V + +C V + GG+I A R + AIN GG HH DE
Sbjct: 90 EWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDE 149
Query: 168 GGGFCAYADISLCI 181
GFC DI L I
Sbjct: 150 ASGFCYVNDIVLAI 163
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI 161
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ + HP + L + G K I P +AS E++
Sbjct: 8 KKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKY 67
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ +A KL K+
Sbjct: 68 HSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQ 127
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ ++N GG HH E GFC DI L I
Sbjct: 128 QTDISVNWSGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI 161
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ E++
Sbjct: 9 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKY 68
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKE 149
HS+ Y+K L+S N+S ++ + +C V + + GG++ A KL ++
Sbjct: 69 HSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQ 128
Query: 150 R-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
+ A+N GG HH E GFC DI L I
Sbjct: 129 QTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAI 161
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ + HP + L + G K I P +A+ E++ HS+ Y
Sbjct: 13 YYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
Query: 99 LKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-GWA 153
+K L+S N+S ++ + +C V + + GG++ +A KL K++ A
Sbjct: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIA 132
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCI 181
+N GG HH E GFC DI L I
Sbjct: 133 VNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ + HP + L + G K I P +A+ E++ HS+ Y
Sbjct: 13 YYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDY 72
Query: 99 LKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAA-KLAKER-GWA 153
+K L+S N+S ++ + +C V + + GG++ +A KL K++ A
Sbjct: 73 IKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIA 132
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCI 181
+N GG HH E GFC DI L I
Sbjct: 133 VNWAGGLHHAKKSEASGFCYVNDIVLAI 160
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
+YSP+Y + + K+ ++ + + + G L +V+P AS E++ V H++S
Sbjct: 20 VYSPEYIQTCDSLSKV----PNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDS 75
Query: 98 YLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK---LAKERGW 152
YL+ L S + + L +C V + + + VGG L A L +
Sbjct: 76 YLQHLHKISQDGDNDDPQSADFGLGYDCPVVEGI-FDYAAAVGGATLTAAQNLLDGKCDV 134
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG+HH DE G C D L I
Sbjct: 135 AINWAGGWHHAKKDEASGSCYVNDAVLGI 163
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D DI + HP + L + G K I P +A+ +++
Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKF 65
Query: 94 HSESYLKSLQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAK 148
HS+ Y++ L+S N+S ++ + +C V LY F + GG++ AA KL K
Sbjct: 66 HSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV-FDGLYEFCQLSAGGSVAAAVKLNK 124
Query: 149 ERGW-AINVGGGFHHCSADEGGGFCAYADISLCI 181
+ IN GGG HH E GFC DI L I
Sbjct: 125 QASEICINWGGGLHHAKKSEASGFCYVNDIVLGI 158
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGW- 152
Y+ LQ SPN + + +C V + + G ++ A L +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCD 124
Query: 153 -AINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
+V+P AS E++ H+++YL+ L S + E L +C + + Y +
Sbjct: 4 VVKPKVASMEEMAAFHTDAYLQHLHKVSEEGDNDDPETLEYGLGYDCPITEGI-YDYAAA 62
Query: 137 VGGTILAAK---LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
VGG L A + + A+N GG+HH DE GFC D L I
Sbjct: 63 VGGATLTAAEQLIEGKTRIAVNWPGGWHHAKKDEASGFCYLNDAVLGI 110
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ Y P+ + G + HP + L+ G L +++P A DL
Sbjct: 18 KVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRF 75
Query: 94 HSESY---LKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H++ Y L+S+ I ++ + +C V LY F + G + +
Sbjct: 76 HADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPV-FDGLYSFCQTYAGGSVGGSVKLNH 134
Query: 151 GW---AINVGGGFHHCSADEGGGFCAYADISLCI 181
G AIN GG HH E GFC DI L I
Sbjct: 135 GLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAI 168
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 54 HPFDSSKWGRICQFLSSEGFLDKNCIV--EPLEASKEDLLVVHSESYLKSLQSSPNVSII 111
HP + L EG + IV EP +AS ED+L VH+E Y++ L+ I
Sbjct: 20 HPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEMESKKGGI 79
Query: 112 IEVP---PVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAK--ERGWAINVGGGFHHCS 164
I+ PV +F L+ GG I AA+ L K E +A+ G HH
Sbjct: 80 IDFDTNIPVGVFDRALL----------AAGGAIRAAQAVLNKECENAFAMIRPPG-HHAK 128
Query: 165 ADEGGGFCAYADISLCIHYAFVQ 187
G GFC ++++ + + Q
Sbjct: 129 PYIGAGFCYLNNMAIMVKWLLKQ 151
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 12/151 (7%)
Query: 38 IYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSES 97
Y PD + G + HP + L+ G L++ + P A + +L H+E
Sbjct: 28 FYDPDVGNYYYG--QGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEE 85
Query: 98 YLKSLQSSPNVSIIIEVPPVALFPNCLVQRKV-----LYPFRKQVGGTIL--AAKLAKER 150
Y+ L+S V+ + + L V + LY F + G + A K
Sbjct: 86 YINFLRS---VTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHGH 142
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI L I
Sbjct: 143 DIAINWSGGLHHAKKCEASGFCYVNDIVLAI 173
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
GGTI AA+ + + AIN GG+HH DE GFC D L I
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI 162
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIEYGLGYDCPATEGIFDYAAAI 115
Query: 137 VGGTILAAK--LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
GGTI AA+ + + AIN GG+HH DE GFC D L I
Sbjct: 116 GGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI 162
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ SPN + + +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 5/148 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCI 181
IN GG HH E GFC DI + I
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI 154
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ SPN + + +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 5/148 (3%)
Query: 39 YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESY 98
Y D D+ HP + + G K + +P +AS+ D+ HSE Y
Sbjct: 7 YFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDY 66
Query: 99 LKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWA 153
+ LQ SPN + + +C V + + G ++ A + A
Sbjct: 67 IDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIA 126
Query: 154 INVGGGFHHCSADEGGGFCAYADISLCI 181
IN GG HH E GFC DI + I
Sbjct: 127 INWAGGLHHAKKFEASGFCYVNDIVISI 154
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCI 181
+GG + A G AIN GG+HH DE GFC D L I
Sbjct: 115 IGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI 162
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQ 136
IV+P AS E++ H+++YL+ LQ S + L +C + + +
Sbjct: 56 IVKPKVASMEEMASFHTDAYLQHLQKVSEDGDDDHPDSIEYGLGYDCPATEGI-FDYAAA 114
Query: 137 VGGTILAAKLAKERGW---AINVGGGFHHCSADEGGGFCAYADISLCI 181
VGG + A G AIN GG+HH DE GFC D L I
Sbjct: 115 VGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI 162
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 79 IVEPLEASKEDLLVVHSESYLKSLQSS-PN--VSIIIEVPPVALFPNCLVQRKVLYPF-R 134
I P AS ED+ HS+ Y+ L+S+ P+ S ++ + +C + LY F +
Sbjct: 57 IFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPL-FDGLYEFCQ 115
Query: 135 KQVGGTILAA-KLAKER-GWAINVGGGFHHCSADEGGGFCAYADISLCI 181
GG++ AA KL K++ AIN GG HH E GFC DI L I
Sbjct: 116 LSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGI 164
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1
PE=2 SV=1
Length = 576
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 42 DYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKS 101
D D+ + HP + + + G K I P +A E++ HS+ Y+K
Sbjct: 15 DGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMTKYHSDDYVKF 74
Query: 102 LQS--SPNVS-IIIEVPPVALFPNCLVQRKVLYPF-RKQVGGTILAA-KLAKER-GWAIN 155
L++ N+S ++ + +C V LY F + GG++ A KL K++ AIN
Sbjct: 75 LRTIRPDNMSEYTKQMQRFNVGEDCPV-FDGLYEFCQLSSGGSVAGAVKLNKQQTDIAIN 133
Query: 156 VGGGFHHCSADEGGGFCAYADISLCI 181
GG HH E GFC DI L I
Sbjct: 134 WAGGLHHAKKSEASGFCYVNDIVLAI 159
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1
Length = 424
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ ++ + F +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ ++ + F +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ ++ + F +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1
Length = 428
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
+ Y D D+ HP + + G K + +P +AS+ D+ HSE
Sbjct: 5 VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAKLAKER--G 151
Y+ LQ ++ + F +C V + + G ++ A +
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCI 181
AIN GG HH E GFC DI + I
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGI 154
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K + Y D D+ HP + + + + +K ++ P+ A++ D+
Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRC 64
Query: 94 HSESYLKSL-QSSPNVSIIIEVPPVALFPNCLVQRKV---LYPF-RKQVGGTILAAKL-- 146
H++ Y++ L + +P+ + + P L N V LY F GG+I AA+
Sbjct: 65 HTDEYIEFLWRVTPDT--MEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELN 122
Query: 147 AKERGWAINVGGGFHHCSADEGGGFCAYADISLC 180
+ AIN GG HH E GFC DI+L
Sbjct: 123 SGNAEIAINWAGGLHHAKKREASGFCYVNDIALA 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,396,002
Number of Sequences: 539616
Number of extensions: 2826782
Number of successful extensions: 6064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5960
Number of HSP's gapped (non-prelim): 84
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)