Query 029525
Match_columns 192
No_of_seqs 154 out of 1158
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 23:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zz1_A Histone deacetylase-lik 100.0 4.7E-42 1.6E-46 301.2 -0.8 151 33-192 1-173 (369)
2 2pqp_A HD7A, histone deacetyla 100.0 5.6E-41 1.9E-45 297.0 1.7 168 24-192 26-218 (421)
3 3max_A HD2, histone deacetylas 100.0 4.5E-41 1.5E-45 294.1 -1.0 155 32-188 2-161 (367)
4 1c3p_A Protein (HDLP (histone 100.0 8.4E-41 2.9E-45 293.8 -1.5 157 33-192 2-161 (375)
5 4a69_A Histone deacetylase 3,; 100.0 1.1E-40 3.7E-45 292.8 -0.9 155 32-188 2-161 (376)
6 2vqm_A HD4, histone deacetylas 100.0 1.6E-40 5.5E-45 295.3 0.1 162 30-192 5-189 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 9.8E-40 3.4E-44 283.2 1.1 153 35-192 1-188 (341)
8 3ew8_A HD8, histone deacetylas 100.0 6.3E-40 2.2E-44 288.3 -1.1 154 30-187 11-168 (388)
9 3men_A Acetylpolyamine aminohy 100.0 4.2E-39 1.4E-43 280.9 -0.4 148 35-187 22-203 (362)
10 3oc8_A Toxin coregulated pilus 15.6 59 0.002 23.2 1.3 18 30-47 56-73 (137)
No 1
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=4.7e-42 Score=301.22 Aligned_cols=151 Identities=19% Similarity=0.297 Sum_probs=137.5
Q ss_pred CCcceEecCCCceeecccccc----------------CCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecH
Q 029525 33 FKLPLIYSPDYDISFLGIEKL----------------HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96 (192)
Q Consensus 33 ~~~~iiy~~~~~~h~~~~~~~----------------Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~ 96 (192)
|+++++|||+|+.|.++ .+ |||+|+|++.|.++|++.|+++.+++++|+++++++|++||++
T Consensus 1 m~t~~~y~~~~~~h~~~--~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~ 78 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTG--TGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSA 78 (369)
T ss_dssp -CEEEECCGGGGGCCCC--SSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCH
T ss_pred CeEEEEEchHHcccCCC--CcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccH
Confidence 57899999999999754 44 9999999999999999999998899999999999999999999
Q ss_pred HHHhhcccCce-eeeeeecCCceecc-hhhhhhcccccccccccceeeehhhhhh----hceeEeecCCcccccCCCCCe
Q 029525 97 SYLKSLQSSPN-VSIIIEVPPVALFP-NCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGG 170 (192)
Q Consensus 97 ~Yv~~l~~~~~-~~~~~e~~~~~~~~-d~~~~~~~~~~a~~aaGg~l~aa~~~l~----~~~a~~rppG~HHA~~~~a~G 170 (192)
+||++|++.+. .. ...++. |||+++++++++++++||++.|++.+++ ++||++|||| |||++++++|
T Consensus 79 ~Yv~~l~~~~~~~~------~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~G 151 (369)
T 1zz1_A 79 AHLENMKRVSNLPT------GGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMG 151 (369)
T ss_dssp HHHHHHHHHHHSTT------CEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBT
T ss_pred HHHHHHHHhCcccc------ceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCC
Confidence 99999998764 22 123566 9999999999999999999999999986 4799999999 9999999999
Q ss_pred eeEechhhhhHhhhhhhcccCC
Q 029525 171 FCAYADISLCIHYAFVQLNISR 192 (192)
Q Consensus 171 FC~fNnvAIAa~~l~~~~g~~R 192 (192)
||+|||+||||++|++++|++|
T Consensus 152 FC~fNnvAiAa~~l~~~~g~~R 173 (369)
T 1zz1_A 152 FCIFNNTSVAAGYARAVLGMER 173 (369)
T ss_dssp TBSSCHHHHHHHHHHHTSCCSC
T ss_pred chHhhHHHHHHHHHHHhcCCCe
Confidence 9999999999999999999887
No 2
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=5.6e-41 Score=297.02 Aligned_cols=168 Identities=20% Similarity=0.172 Sum_probs=135.3
Q ss_pred cceeeecC-CCCcceEecCCCceeecc--ccccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHh
Q 029525 24 SKLYFDIP-IFKLPLIYSPDYDISFLG--IEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100 (192)
Q Consensus 24 ~~~~~~~~-~~~~~iiy~~~~~~h~~~--~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~ 100 (192)
....+..| .|+++++||++|+.|.+. .+..|||+|+|++.|+++|++.|+++.+++++|++|++|+|++||+++||+
T Consensus 26 ~~~~~~~~~~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~ 105 (421)
T 2pqp_A 26 SSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVL 105 (421)
T ss_dssp -------CCTTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHH
T ss_pred CCCCCCCCCCCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHH
Confidence 33334556 588999999999999743 356899999999999999999999999999999999999999999999997
Q ss_pred hcccC-----cee---------eeee-ecC--Cceecchhhhh-hcccccccccccceeeehhhhhh----hceeEeecC
Q 029525 101 SLQSS-----PNV---------SIII-EVP--PVALFPNCLVQ-RKVLYPFRKQVGGTILAAKLAKE----RGWAINVGG 158 (192)
Q Consensus 101 ~l~~~-----~~~---------~~~~-e~~--~~~~~~d~~~~-~~~~~~a~~aaGg~l~aa~~~l~----~~~a~~rpp 158 (192)
.+... ... .... ..+ ..+++.|++++ ..+|++|++++|+++.|++.+++ ++||++|||
T Consensus 106 ~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPp 185 (421)
T 2pqp_A 106 LYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPP 185 (421)
T ss_dssp HHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSC
T ss_pred hhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCC
Confidence 53211 100 0000 011 12456788887 48899999999999999999974 579999999
Q ss_pred CcccccCCCCCeeeEechhhhhHhhhhhhcccCC
Q 029525 159 GFHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192 (192)
Q Consensus 159 G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~g~~R 192 (192)
| |||.+++++|||+||||||||++|++++|++|
T Consensus 186 G-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~R 218 (421)
T 2pqp_A 186 G-HHADHSTAMGFCFFNSVAIACRQLQQQSKASK 218 (421)
T ss_dssp C-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCC
T ss_pred C-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCe
Confidence 9 99999999999999999999999999999887
No 3
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=294.10 Aligned_cols=155 Identities=24% Similarity=0.332 Sum_probs=136.7
Q ss_pred CCCcceEecCCCceeeccccccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCceeeee
Q 029525 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (192)
Q Consensus 32 ~~~~~iiy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~~~~ 111 (192)
+.++.++||++|..|.+ +++|||+|+|++.|.++|++.|+++.+++++|++|++++|++||+++||++|++.+.....
T Consensus 2 ~~~v~~~y~~~~~~~~~--g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYY--GQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMS 79 (367)
T ss_dssp CCCEEEECCGGGGGCCC--CTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEECccccCcCC--CCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccc
Confidence 45789999999999975 5789999999999999999999999999999999999999999999999999987653210
Q ss_pred ---eecCCceecchhhhhhcccccccccccceeeehhhhhh--hceeEeecCCcccccCCCCCeeeEechhhhhHhhhhh
Q 029525 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (192)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~--~~~a~~rppG~HHA~~~~a~GFC~fNnvAIAa~~l~~ 186 (192)
.+...+++++|||+++++|+++++++||++.|++.+++ .++|++||||+|||.++++||||+||||||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~ 159 (367)
T 3max_A 80 EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 159 (367)
T ss_dssp GCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTT
T ss_pred hhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHH
Confidence 01112356789999999999999999999999998875 4799999999999999999999999999999999997
Q ss_pred hc
Q 029525 187 QL 188 (192)
Q Consensus 187 ~~ 188 (192)
.+
T Consensus 160 ~~ 161 (367)
T 3max_A 160 YH 161 (367)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=8.4e-41 Score=293.83 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=137.1
Q ss_pred CCcceEecCCCceeeccccccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCceeee--
Q 029525 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI-- 110 (192)
Q Consensus 33 ~~~~iiy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~~~-- 110 (192)
++++++||++|..|.+ +.+|||+|+|++.|+++|++.|+++.+++++|++|++++|++||+++||++|++.+....
T Consensus 2 ~~t~~vy~~~~~~h~~--g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~ 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRY--PKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP 79 (375)
T ss_dssp CCEEEEECGGGGGSCC--CTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEECHHHcCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC
Confidence 4689999999999964 578999999999999999999999888999999999999999999999999998764210
Q ss_pred eeecCCcee-cchhhhhhcccccccccccceeeehhhhhhhceeEeecCCcccccCCCCCeeeEechhhhhHhhhhhhcc
Q 029525 111 IIEVPPVAL-FPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189 (192)
Q Consensus 111 ~~e~~~~~~-~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~~~~a~~rppG~HHA~~~~a~GFC~fNnvAIAa~~l~~~~g 189 (192)
..+...+++ +.|||+++++++++++++||++.|++.+++++.|+++|||+|||.++++||||+||||||||++|+++ |
T Consensus 80 ~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g 158 (375)
T 1c3p_A 80 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-G 158 (375)
T ss_dssp TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-T
T ss_pred hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-C
Confidence 001112234 68999999999999999999999999999988888888889999999999999999999999999876 5
Q ss_pred cCC
Q 029525 190 ISR 192 (192)
Q Consensus 190 ~~R 192 (192)
++|
T Consensus 159 ~~R 161 (375)
T 1c3p_A 159 FKR 161 (375)
T ss_dssp CCC
T ss_pred CCe
Confidence 565
No 5
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=292.79 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=136.4
Q ss_pred CCCcceEecCCCceeeccccccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCceeeee
Q 029525 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (192)
Q Consensus 32 ~~~~~iiy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~~~~ 111 (192)
+.++.++|||+|..|.+ +++|||+|+|++.|.++|++.|+++.+++++|++|++++|++||+++||++|++.+.....
T Consensus 2 ~~~~~~~y~~~~~~~~~--g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHY--GAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQ 79 (376)
T ss_dssp CCCEEEECCTTTTCCCC--CTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGG
T ss_pred CCeEEEEEChHHhCcCC--CCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccch
Confidence 35789999999999964 5789999999999999999999999999999999999999999999999999987643110
Q ss_pred ---eecCCceecchhhhhhcccccccccccceeeehhhhhhh--ceeEeecCCcccccCCCCCeeeEechhhhhHhhhhh
Q 029525 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (192)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~~--~~a~~rppG~HHA~~~~a~GFC~fNnvAIAa~~l~~ 186 (192)
.+...++++.|||+++++++++++++||++.|++.++++ ++|+++|||+|||+++++||||+||||||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~ 159 (376)
T 4a69_A 80 GFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK 159 (376)
T ss_dssp GGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred hhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHH
Confidence 011123567899999999999999999999999998764 589999999999999999999999999999999998
Q ss_pred hc
Q 029525 187 QL 188 (192)
Q Consensus 187 ~~ 188 (192)
++
T Consensus 160 ~~ 161 (376)
T 4a69_A 160 YH 161 (376)
T ss_dssp TC
T ss_pred hC
Confidence 64
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=1.6e-40 Score=295.30 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=133.6
Q ss_pred cCCCCcceEecCCCceeeccc--cccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCce
Q 029525 30 IPIFKLPLIYSPDYDISFLGI--EKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (192)
Q Consensus 30 ~~~~~~~iiy~~~~~~h~~~~--~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~ 107 (192)
.|.|+|++|||++|+.|.++. ...|||+|+|++.|+++|++.||++.+++++|++|++++|++||+++||+.++....
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 478999999999999998653 356999999999999999999999999999999999999999999999988765432
Q ss_pred eeee--------------ee--cCCceecchhhhhh-cccccccccccceeeehhhhhh----hceeEeecCCcccccCC
Q 029525 108 VSII--------------IE--VPPVALFPNCLVQR-KVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSAD 166 (192)
Q Consensus 108 ~~~~--------------~e--~~~~~~~~d~~~~~-~~~~~a~~aaGg~l~aa~~~l~----~~~a~~rppG~HHA~~~ 166 (192)
.... .. .....++.|++++. .++++|++++|++++|++.++. ++||++|||| |||.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~ 163 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEES 163 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTT
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCC
Confidence 1100 00 11234567777664 7889999999999999999975 4799999999 999999
Q ss_pred CCCeeeEechhhhhHhhhhhhcccCC
Q 029525 167 EGGGFCAYADISLCIHYAFVQLNISR 192 (192)
Q Consensus 167 ~a~GFC~fNnvAIAa~~l~~~~g~~R 192 (192)
+++|||+||||||||++|+++++++|
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~~~~~R 189 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQRLSVSK 189 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSCCSC
T ss_pred CCCCccccchHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999887
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=9.8e-40 Score=283.25 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=130.8
Q ss_pred cceEecCCCceeeccc------cccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCcee
Q 029525 35 LPLIYSPDYDISFLGI------EKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (192)
Q Consensus 35 ~~iiy~~~~~~h~~~~------~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~ 108 (192)
+.++|||+|+.|..+. ...|||+|+|++.|+++|++.|+. ++++|+++++++|++||+++||++|++.+..
T Consensus 1 m~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~ 77 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDR 77 (341)
T ss_dssp CEEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHH
T ss_pred CEEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 4689999999997642 136999999999999999999984 6789999999999999999999999986531
Q ss_pred e-----e---eee------------------cCCceecchhhhhhcccccccccccceeeehhhhhh---hceeEeecCC
Q 029525 109 S-----I---IIE------------------VPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGG 159 (192)
Q Consensus 109 ~-----~---~~e------------------~~~~~~~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~---~~~a~~rppG 159 (192)
. + ..+ ...+.+++|||+++++|++|++++||++.|++.+++ ++||++||||
T Consensus 78 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG 157 (341)
T 3q9b_A 78 WKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG 157 (341)
T ss_dssp HHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC
T ss_pred hhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC
Confidence 0 0 000 011346789999999999999999999999999986 4799999999
Q ss_pred cccccCCCCCeeeEechhhhhHhhhhhhcccCC
Q 029525 160 FHHCSADEGGGFCAYADISLCIHYAFVQLNISR 192 (192)
Q Consensus 160 ~HHA~~~~a~GFC~fNnvAIAa~~l~~~~g~~R 192 (192)
|||.+++++|||+||||||||++|+++ |++|
T Consensus 158 -HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~R 188 (341)
T 3q9b_A 158 -HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKK 188 (341)
T ss_dssp -TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSC
T ss_pred -CCCCCCCCCCccccCHHHHHHHHHHHc-CCCe
Confidence 999999999999999999999999985 6776
No 8
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=6.3e-40 Score=288.32 Aligned_cols=154 Identities=25% Similarity=0.262 Sum_probs=133.6
Q ss_pred cCCCCcceEecCCCceeeccccccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCceee
Q 029525 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVS 109 (192)
Q Consensus 30 ~~~~~~~iiy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~~ 109 (192)
.++.++.++||++|+.|. .+|||+|+|++.|.++|++.|+++.+++++|++|++++|++||+++||++|++.+...
T Consensus 11 ~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~ 86 (388)
T 3ew8_A 11 GQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEG 86 (388)
T ss_dssp ---CCCEEECCHHHHHHH----TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEChHHhccC----CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccc
Confidence 346789999999999872 4799999999999999999999999999999999999999999999999999876432
Q ss_pred ee--eecCCceecchhhhhhcccccccccccceeeehhhhhhh--ceeEeecCCcccccCCCCCeeeEechhhhhHhhhh
Q 029525 110 II--IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAF 185 (192)
Q Consensus 110 ~~--~e~~~~~~~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~~--~~a~~rppG~HHA~~~~a~GFC~fNnvAIAa~~l~ 185 (192)
.. .+...++++.|||+++++|+++++++||+|.|++.++++ ++|++||||+|||.+++++|||+||||||||++|+
T Consensus 87 ~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~ 166 (388)
T 3ew8_A 87 DDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLR 166 (388)
T ss_dssp --------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHT
T ss_pred cccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHH
Confidence 11 112234566799999999999999999999999999975 68999999999999999999999999999999998
Q ss_pred hh
Q 029525 186 VQ 187 (192)
Q Consensus 186 ~~ 187 (192)
+.
T Consensus 167 ~~ 168 (388)
T 3ew8_A 167 RK 168 (388)
T ss_dssp TT
T ss_pred hc
Confidence 75
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=4.2e-39 Score=280.92 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=127.7
Q ss_pred cceEecCCCceeeccc------cccCCCCCcchHHHHHHhhhcCccCCCceecccccCccceEEEecHHHHhhcccCcee
Q 029525 35 LPLIYSPDYDISFLGI------EKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (192)
Q Consensus 35 ~~iiy~~~~~~h~~~~------~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vH~~~Yv~~l~~~~~~ 108 (192)
+.++|||+|+.|.++. ...|||+|+|++.|+++|++.|+ ++++|+++++++|++||+++||++|++.+..
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 4699999999998642 13699999999999999999997 6899999999999999999999999876521
Q ss_pred ------eeeee-cC------------------Cceecchhhhhhcccccccccccceeeehhhhhh---hceeEeecCCc
Q 029525 109 ------SIIIE-VP------------------PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGGF 160 (192)
Q Consensus 109 ------~~~~e-~~------------------~~~~~~d~~~~~~~~~~a~~aaGg~l~aa~~~l~---~~~a~~rppG~ 160 (192)
+...| ++ .+.+++|||+++++|++|++++|+++.|++.+++ ++||++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 00000 00 1246789999999999999999999999999986 4799999999
Q ss_pred ccccCCCCCeeeEechhhhhHhhhhhh
Q 029525 161 HHCSADEGGGFCAYADISLCIHYAFVQ 187 (192)
Q Consensus 161 HHA~~~~a~GFC~fNnvAIAa~~l~~~ 187 (192)
|||.+++++|||+||||||||++|+++
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~ 203 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRAR 203 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTT
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHc
Confidence 999999999999999999999999987
No 10
>3oc8_A Toxin coregulated pilus biosynthesis protein F; immunoglobulin-like fold, cell adhesion; 2.10A {Vibrio cholerae}
Probab=15.62 E-value=59 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.2
Q ss_pred cCCCCcceEecCCCceee
Q 029525 30 IPIFKLPLIYSPDYDISF 47 (192)
Q Consensus 30 ~~~~~~~iiy~~~~~~h~ 47 (192)
+|...+++||+|.|....
T Consensus 56 vp~~etgviydpvy~e~~ 73 (137)
T 3oc8_A 56 VPHAETGVIYDPVYEETV 73 (137)
T ss_dssp CCCTTTCCCSSCSEEEEE
T ss_pred cCCCccceEechhhhccc
Confidence 488889999999998754
Done!