BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029526
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GVF|A Chain A, Structure Of Tagatose-1,6-Bisphosphate Aldolase
pdb|1GVF|B Chain B, Structure Of Tagatose-1,6-Bisphosphate Aldolase
Length = 286
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+ A LTD
Sbjct: 97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTD 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLHGASG 126
+A+ F++ T +D+LAV IG HG Y S P V LVLHGAS
Sbjct: 157 PQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPK---IDFQRLAEIREVVDVPLVLHGASD 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAY 153
+ E ++ IE GV K NV TE++ A+
Sbjct: 213 VPDEFVRRTIELGVTKVNVATELKIAF 239
>pdb|3PM6|A Chain A, Crystal Structure Of A Putative Fructose-1,6-Biphosphate
Aldolase From Coccidioides Immitis Solved By Combined
Sad Mr
pdb|3PM6|B Chain B, Crystal Structure Of A Putative Fructose-1,6-Biphosphate
Aldolase From Coccidioides Immitis Solved By Combined
Sad Mr
Length = 306
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VEDYEAKLT 65
GFDS+MVD SH ++N+ T+ + +++G+ EAE GR+ G EDG+ D E LT
Sbjct: 113 GFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLT 172
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXG--VLLVLHG 123
++EEF+ T I+ LA GNVHG Y GP G V LVLHG
Sbjct: 173 TPEESEEFV-ATGINWLAPAFGNVHGNY---GPRGVQLDYERLQRINEAVGERVGLVLHG 228
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYM 154
A + E+ + CIERGV K NVN V Y+
Sbjct: 229 ADPFTKEIFEKCIERGVAKVNVNRAVNNEYV 259
>pdb|3C4U|A Chain A, Structure Of Class Ii Fructose-Biphosphate Aldolase From
Helicobacter Pylori
pdb|3C4U|B Chain B, Structure Of Class Ii Fructose-Biphosphate Aldolase From
Helicobacter Pylori
pdb|3C52|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
pdb|3C52|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
Phosphoglycolohydroxamic Acid, A Competitive Inhibitor
pdb|3C56|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(3-Hydroxypropyl)-
Glycolohydroxamic Acid Bisphosphate, A Competitive
Inhibitor
pdb|3C56|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(3-Hydroxypropyl)-
Glycolohydroxamic Acid Bisphosphate, A Competitive
Inhibitor
pdb|3N9R|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|K Chain K, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|P Chain P, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|U Chain U, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|Z Chain Z, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|EE Chain e, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9R|JJ Chain j, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With
N-(4-Hydroxybutyl)-Phosphoglycolohydroxamic Acid, A
Competitive Inhibitor
pdb|3N9S|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(4-Hydroxybutyl)-
Glycolohydroxamic Acid Bis- Phosphate, A Competitive
Inhibitor
pdb|3N9S|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From
Helicobacter Pylori In Complex With N-(4-Hydroxybutyl)-
Glycolohydroxamic Acid Bis- Phosphate, A Competitive
Inhibitor
Length = 307
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 23/179 (12%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+D SH F++N+ T + +AH+ G+ VEAELGRL G ED ++V++ +
Sbjct: 92 KAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKD 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVL 121
A L + +AE+F+ E+ +D LA IG HG + G + LVL
Sbjct: 152 AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKG--EPKLDFERLQEVKRLTNIPLVL 209
Query: 122 HGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
HGAS G+ E ++ ++ G+ K N +T++R A++ + +
Sbjct: 210 HGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRK 268
>pdb|1RV8|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|C Chain C, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|D Chain D, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RVG|A Chain A, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|B Chain B, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|C Chain C, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|D Chain D, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
Length = 305
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ A+ GF S+M+D SH F+ N+ T+ + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLV 120
+A LT+ +A F++ T D LAV IG HG Y G LV
Sbjct: 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAY--KGKGRPFIDHARLERIARLVPAPLV 206
Query: 121 LHGASGLSAEL---------------------IKGCIERGVRKFNVNTEVRKAY 153
LHGAS + EL IK I G+ K N +T++R A+
Sbjct: 207 LHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAF 260
>pdb|3Q94|A Chain A, The Crystal Structure Of Fructose 1,6-Bisphosphate
Aldolase From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3Q94|B Chain B, The Crystal Structure Of Fructose 1,6-Bisphosphate
Aldolase From Bacillus Anthracis Str. 'ames Ancestor'
Length = 288
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+ +D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 98 EAIDAGFTSVXIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG-- 155
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVL 121
D + + ++ T ID LA +G+VHG Y PN GV LVL
Sbjct: 156 VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PN---LGFAEXEQVRDFTGVPLVL 211
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLXXXXXXXX 175
HG +G+ I+ I G K NVNTE + KA + L++ + D
Sbjct: 212 HGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAI 271
Query: 176 XXXXXXXXRLFGSSGKA 192
R FGS+GKA
Sbjct: 272 KATVIGKIREFGSNGKA 288
>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
Length = 323
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62
AI LGF S+M+D SH PF +N+ TK + AH++G+ VEAELG L G E+ +
Sbjct: 94 AIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARGVSVEAELGTLGGIEEDV---QNTV 150
Query: 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLH 122
+LT+ A++F++ T +DALAV IG HG Y + G+ LV+H
Sbjct: 151 QLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMH 210
Query: 123 GAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
G+S G+ E I I GV K NV+++ R A ++ +
Sbjct: 211 GSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRK 268
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62
AI LGF S+M+D SH PF +N+ TK + AH++G+ VEAELG L G E+ +
Sbjct: 94 AIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARGVSVEAELGTLGGIEEDV---QNTV 150
Query: 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLH 122
+LT+ A++F++ T +DALAV IG HG Y + G+ LV+H
Sbjct: 151 QLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMH 210
Query: 123 GAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
G+S G+ E I I GV K NV+++ R A ++ +
Sbjct: 211 GSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRK 268
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++A+ GF S+ +D SH F+ N+ TK + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LKALREGFTSVXIDKSHEDFETNVRETKRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLV 120
+A LT+ +A F + T D LAV IG HG Y G LV
Sbjct: 149 DALLTNPEEARIFXERTGADYLAVAIGTSHGAY--KGKGRPFIDHPRLARIAKLVPAPLV 206
Query: 121 LHGASGLSAEL---------------------IKGCIERGVRKFNVNTEVRKAY 153
LHGAS + EL IK I G+ K N +T++R A+
Sbjct: 207 LHGASAVPQELVERFRAAGGEIGEASGIHPEDIKKAISLGIAKINTDTDLRLAF 260
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62
AI LGF S+M+D SH PF +N+ TK + AH++ + VEAELG L G E+ +
Sbjct: 94 AIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDV---QNTV 150
Query: 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVLLVLH 122
+LT+ A++F++ T +DALAV IG HG Y + G+ LV+H
Sbjct: 151 QLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMH 210
Query: 123 GAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
G+S G+ E I I GV K NV+++ R A ++ +
Sbjct: 211 GSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGAIRK 268
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 8 FDSLMVDGSHLPFKDNIS-HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA---- 62
F S M+D S ++NI +KY+ ++ GM +E ELG G EDG+ +A
Sbjct: 138 FSSHMIDLSEESLQENIEICSKYLERMS-KIGMTLEIELGCTGGEEDGVDNSHMDASALY 196
Query: 63 -KLTDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSG----PN--XXXXXXXXXXXXXXX 114
+ DV+ A E + +A GNVHG Y + P
Sbjct: 197 TQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPH 256
Query: 115 XGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL 157
+ V HG SG +A+ IK + GV K N++T+ + A + +
Sbjct: 257 NSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGV 299
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1GYN|A Chain A, Class Ii Fructose 1,6-Bisphosphate Aldolase With Cadmium
(Not Zinc) In The Active Site
pdb|1ZEN|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 14/163 (8%)
Query: 8 FDSLMVDGSHLPFKDNIS-HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA---- 62
F S M+D S ++NI +KY+ ++ GM +E ELG G EDG+ +A
Sbjct: 138 FSSHMIDLSEESLQENIEICSKYLERMS-KIGMTLEIELGCTGGEEDGVDNSHMDASALY 196
Query: 63 -KLTDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSG----PN--XXXXXXXXXXXXXXX 114
+ DV+ A E + +A GNVHG Y P
Sbjct: 197 TQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPH 256
Query: 115 XGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL 157
+ V HG SG +A+ IK + GV K N++T+ + A + +
Sbjct: 257 NSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGV 299
>pdb|3EKL|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|3EKZ|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|3ELF|A Chain A, Structural Characterization Of Tetrameric Mycobacterium
Tuberculosis Fructose 1,6-Bisphosphate Aldolase -
Substrate Binding And Catalysis Mechanism Of A Class Iia
Bacterial Aldolase
pdb|4DEF|A Chain A, Active Site Loop Dynamics Of A Class Iia Fructose
1,6-bisphosphate Aldolase From M. Tuberculosis
pdb|4DEL|A Chain A, Active Site Loop Dynamics Of A Class Iia Fructose
1,6-bisphosphate Aldolase From M. Tuberculosis
Length = 349
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67
F S M DGS +P +N++ + + A + +++E E+G + G EDG+ E E T
Sbjct: 125 FQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEINEKLYTSP 184
Query: 68 NQAEEFID-----ETDIDALAVCIGNVHGKY--------PSSGPNXXXXXXXXXXXXXXX 114
E+ I+ E LA GNVHG Y P
Sbjct: 185 EDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAKLGLPADA 244
Query: 115 XGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP 160
V HG SG I+ + GV K NV+T+ + A+ +RP
Sbjct: 245 KPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAF----TRP 286
>pdb|4A21|A Chain A, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|B Chain B, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|C Chain C, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A21|D Chain D, Structure Of Mycobacterium Tuberculosis Fructose 1,6-
Bisphosphate Aldolase Bound To Sulfate
pdb|4A22|A Chain A, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|B Chain B, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|C Chain C, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
pdb|4A22|D Chain D, Structure Of Mycobacterium Tuberculosis Fructose
1,6-Bisphosphate Aldolase Bound To
N-(4-Hydroxybutyl)-Glycolohydroxamic Acid Bis-Phosphate
Length = 344
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67
F S M DGS +P +N++ + + A + +++E E+G + G EDG+ E E T
Sbjct: 125 FQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEINEKLYTSP 184
Query: 68 NQAEEFID-----ETDIDALAVCIGNVHGKY--------PSSGPNXXXXXXXXXXXXXXX 114
E+ I+ E LA GNVHG Y P
Sbjct: 185 EDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAKLGLPADA 244
Query: 115 XGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP 160
V HG SG I+ + GV K NV+T+ + A+ +RP
Sbjct: 245 KPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAF----TRP 286
>pdb|3QM3|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
pdb|3QM3|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of
Fructose-Bisphosphate Aldolase (Fba) From Campylobacter
Jejuni
Length = 357
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 13/163 (7%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE-----A 62
F S M+D S ++N+S + + G+ +E ELG G EDG+ +
Sbjct: 136 FSSHMLDLSEESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGIDNSKLYT 195
Query: 63 KLTDVNQAEEFIDE-TDIDALAVCIGNVHGKYPSSGPNXXXXXXXXXXXXXXXXGVL--- 118
+ DV A E + + +D ++A GNVHG Y + L
Sbjct: 196 QPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSD 255
Query: 119 ----LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL 157
V HG SG + IK + GV K N++T+ + A+ D +
Sbjct: 256 KPINFVFHGGSGSELKDIKNAVSYGVIKMNIDTDTQWAFWDGV 298
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 22 DNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV-NQAEEFIDE 76
D H +++ L SK ++ + E+G +G T+E ++ +LT V QA E++ +
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSK 108
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 22 DNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV-NQAEEFIDE 76
D H +++ L SK ++ + E+G +G T+E ++ +LT V QA E++ +
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSK 108
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 14 DGSHLPFKDNISHTKYISFL----AHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69
+G + FK HT L +H+ L+ +GRL+ ++ + +++ LT VNQ
Sbjct: 113 EGLYQHFKAIAEHTDLPQILYNVPSHTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQ 172
Query: 70 AEEFIDE 76
+E + +
Sbjct: 173 IKELVSD 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,648,649
Number of Sequences: 62578
Number of extensions: 158093
Number of successful extensions: 438
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 21
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)