Query 029526
Match_columns 192
No_of_seqs 152 out of 1087
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 14:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09195 gatY tagatose-bisphos 100.0 1.1E-73 2.4E-78 497.5 22.9 188 1-192 91-284 (284)
2 PRK12738 kbaY tagatose-bisphos 100.0 1.1E-73 2.3E-78 497.9 22.9 188 1-192 91-284 (286)
3 TIGR01858 tag_bisphos_ald clas 100.0 1.4E-73 3E-78 496.4 22.7 188 1-192 89-282 (282)
4 PRK07709 fructose-bisphosphate 100.0 4.9E-73 1.1E-77 493.6 23.4 186 1-192 94-285 (285)
5 PRK12737 gatY tagatose-bisphos 100.0 6.8E-73 1.5E-77 492.6 22.9 187 1-191 91-283 (284)
6 PRK08610 fructose-bisphosphate 100.0 7.9E-73 1.7E-77 492.4 23.2 186 1-192 94-285 (286)
7 COG0191 Fba Fructose/tagatose 100.0 5.3E-73 1.1E-77 490.1 21.9 189 1-192 92-286 (286)
8 PRK12857 fructose-1,6-bisphosp 100.0 1E-72 2.2E-77 491.5 23.1 188 1-192 91-284 (284)
9 TIGR00167 cbbA ketose-bisphosp 100.0 3.6E-72 7.8E-77 489.0 23.0 188 1-192 94-288 (288)
10 PF01116 F_bP_aldolase: Fructo 100.0 4.5E-72 9.7E-77 488.2 22.5 190 1-192 90-287 (287)
11 PRK05835 fructose-bisphosphate 100.0 8.3E-72 1.8E-76 489.4 23.1 187 1-191 91-306 (307)
12 PRK07084 fructose-bisphosphate 100.0 1.6E-69 3.6E-74 476.9 22.8 188 1-192 102-321 (321)
13 cd00947 TBP_aldolase_IIB Tagat 100.0 3.1E-69 6.7E-74 468.0 22.9 185 1-190 86-276 (276)
14 PRK07998 gatY putative fructos 100.0 6E-69 1.3E-73 467.3 22.1 184 1-191 91-280 (283)
15 PRK09197 fructose-bisphosphate 100.0 1.3E-68 2.9E-73 474.8 22.5 190 3-192 124-349 (350)
16 TIGR01521 FruBisAldo_II_B fruc 100.0 1.3E-68 2.8E-73 475.0 22.1 190 1-192 90-327 (347)
17 PRK13399 fructose-1,6-bisphosp 100.0 2.7E-68 5.8E-73 473.6 22.1 190 1-192 92-329 (347)
18 PRK09196 fructose-1,6-bisphosp 100.0 4.4E-68 9.6E-73 471.9 21.6 190 1-192 92-329 (347)
19 TIGR01520 FruBisAldo_II_A fruc 100.0 7.1E-68 1.5E-72 470.8 22.2 190 2-191 119-356 (357)
20 cd00946 FBP_aldolase_IIA Class 100.0 9E-68 1.9E-72 469.9 22.3 190 2-191 118-344 (345)
21 PRK08185 hypothetical protein; 100.0 4.5E-65 9.7E-70 443.3 23.2 189 1-192 85-280 (283)
22 cd00453 FTBP_aldolase_II Fruct 100.0 6.4E-65 1.4E-69 448.9 22.5 190 1-190 104-340 (340)
23 PLN02858 fructose-bisphosphate 100.0 1.4E-63 2.9E-68 503.7 23.5 192 1-192 1186-1378(1378)
24 PRK06801 hypothetical protein; 100.0 4.1E-61 8.9E-66 419.1 23.0 188 1-192 91-286 (286)
25 PRK07315 fructose-bisphosphate 100.0 3.2E-58 6.9E-63 402.2 22.3 186 1-192 93-293 (293)
26 TIGR01859 fruc_bis_ald_ fructo 100.0 1.2E-56 2.7E-61 390.3 23.0 186 1-192 91-282 (282)
27 PRK06806 fructose-bisphosphate 100.0 1.4E-54 2.9E-59 377.4 22.8 186 1-192 91-281 (281)
28 KOG4153 Fructose 1,6-bisphosph 100.0 5.6E-44 1.2E-48 305.7 4.2 188 2-189 131-355 (358)
29 cd00958 DhnA Class I fructose- 97.7 0.00085 1.8E-08 56.3 12.9 126 2-150 84-218 (235)
30 cd02932 OYE_YqiM_FMN Old yello 97.7 0.0017 3.6E-08 57.8 15.0 134 1-149 161-323 (336)
31 PRK05692 hydroxymethylglutaryl 97.6 0.0036 7.8E-08 54.9 15.8 139 2-157 87-260 (287)
32 PRK00043 thiE thiamine-phospha 97.6 0.016 3.5E-07 47.3 18.7 140 2-150 29-192 (212)
33 PRK01130 N-acetylmannosamine-6 97.5 0.0024 5.2E-08 53.2 12.5 120 2-150 83-206 (221)
34 cd02803 OYE_like_FMN_family Ol 97.4 0.0063 1.4E-07 53.4 14.3 136 1-150 148-315 (327)
35 cd00564 TMP_TenI Thiamine mono 97.3 0.027 5.9E-07 44.7 16.0 141 2-150 20-182 (196)
36 PRK07028 bifunctional hexulose 97.3 0.011 2.3E-07 54.4 14.8 120 2-151 76-195 (430)
37 cd04734 OYE_like_3_FMN Old yel 97.3 0.011 2.4E-07 52.9 14.3 135 1-149 148-318 (343)
38 cd04732 HisA HisA. Phosphorib 97.2 0.0099 2.1E-07 49.5 12.9 129 2-150 90-223 (234)
39 PLN02746 hydroxymethylglutaryl 97.1 0.0089 1.9E-07 54.1 12.5 129 2-145 129-272 (347)
40 cd04729 NanE N-acetylmannosami 97.1 0.0089 1.9E-07 49.8 11.5 122 2-152 87-212 (219)
41 PRK15052 D-tagatose-1,6-bispho 97.1 0.041 8.9E-07 50.9 16.6 150 2-158 112-293 (421)
42 TIGR00007 phosphoribosylformim 97.1 0.011 2.4E-07 49.3 12.0 129 2-150 89-222 (230)
43 cd00331 IGPS Indole-3-glycerol 97.1 0.026 5.6E-07 46.8 14.1 117 2-150 89-205 (217)
44 cd04733 OYE_like_2_FMN Old yel 97.1 0.024 5.2E-07 50.5 14.4 135 1-149 156-325 (338)
45 cd02930 DCR_FMN 2,4-dienoyl-Co 97.0 0.022 4.8E-07 51.0 14.1 135 1-149 144-309 (353)
46 cd02801 DUS_like_FMN Dihydrour 97.0 0.014 2.9E-07 48.4 11.6 130 2-150 75-217 (231)
47 cd04726 KGPDC_HPS 3-Keto-L-gul 97.0 0.036 7.8E-07 45.0 13.6 119 2-150 72-190 (202)
48 TIGR02810 agaZ_gatZ D-tagatose 97.0 0.05 1.1E-06 50.3 15.7 151 2-158 111-294 (420)
49 cd07938 DRE_TIM_HMGL 3-hydroxy 96.9 0.018 3.9E-07 50.2 11.9 128 2-144 81-223 (274)
50 cd02931 ER_like_FMN Enoate red 96.9 0.047 1E-06 49.7 14.9 145 1-149 157-338 (382)
51 TIGR03128 RuMP_HxlA 3-hexulose 96.9 0.048 1E-06 44.6 13.7 118 2-150 71-190 (206)
52 PRK13585 1-(5-phosphoribosyl)- 96.9 0.027 5.9E-07 47.3 12.3 132 2-150 93-226 (241)
53 PRK12331 oxaloacetate decarbox 96.7 0.022 4.9E-07 53.1 11.7 121 2-146 104-229 (448)
54 PRK15458 tagatose 6-phosphate 96.7 0.13 2.8E-06 47.8 16.3 149 3-157 116-297 (426)
55 PRK13585 1-(5-phosphoribosyl)- 96.7 0.013 2.8E-07 49.3 9.2 79 64-150 31-109 (241)
56 PF04131 NanE: Putative N-acet 96.7 0.026 5.7E-07 47.1 10.7 117 3-151 60-178 (192)
57 cd04735 OYE_like_4_FMN Old yel 96.7 0.047 1E-06 49.1 12.9 129 1-142 151-309 (353)
58 cd00381 IMPDH IMPDH: The catal 96.6 0.061 1.3E-06 48.0 13.5 125 2-150 101-230 (325)
59 cd07948 DRE_TIM_HCS Saccharomy 96.6 0.049 1.1E-06 47.2 12.4 121 2-144 79-214 (262)
60 PRK06512 thiamine-phosphate py 96.6 0.12 2.7E-06 43.6 14.2 141 2-150 34-196 (221)
61 cd02809 alpha_hydroxyacid_oxid 96.5 0.087 1.9E-06 46.2 13.6 112 65-189 181-292 (299)
62 PRK14024 phosphoribosyl isomer 96.5 0.062 1.3E-06 45.7 12.3 130 2-150 92-226 (241)
63 cd07939 DRE_TIM_NifV Streptomy 96.5 0.17 3.7E-06 43.3 15.0 146 2-169 77-251 (259)
64 cd03174 DRE_TIM_metallolyase D 96.5 0.074 1.6E-06 44.8 12.5 135 2-157 82-245 (265)
65 cd04740 DHOD_1B_like Dihydroor 96.5 0.064 1.4E-06 46.5 12.3 129 2-150 110-264 (296)
66 PRK11858 aksA trans-homoaconit 96.5 0.05 1.1E-06 49.4 12.0 122 2-145 83-219 (378)
67 PRK10605 N-ethylmaleimide redu 96.5 0.066 1.4E-06 48.4 12.6 132 1-149 166-324 (362)
68 cd04747 OYE_like_5_FMN Old yel 96.4 0.15 3.3E-06 46.3 14.9 137 1-149 151-331 (361)
69 PRK00748 1-(5-phosphoribosyl)- 96.4 0.061 1.3E-06 44.8 11.5 132 2-150 91-224 (233)
70 TIGR01949 AroFGH_arch predicte 96.4 0.11 2.4E-06 44.6 12.9 122 2-149 98-230 (258)
71 cd04722 TIM_phosphate_binding 96.3 0.11 2.5E-06 40.4 11.8 119 2-147 79-200 (200)
72 PRK04302 triosephosphate isome 96.3 0.11 2.4E-06 43.5 12.3 120 3-150 81-206 (223)
73 cd07941 DRE_TIM_LeuA3 Desulfob 96.2 0.11 2.4E-06 45.0 12.4 125 2-144 86-225 (273)
74 cd04736 MDH_FMN Mandelate dehy 96.2 0.15 3.3E-06 46.4 13.7 112 64-190 244-355 (361)
75 PRK00278 trpC indole-3-glycero 96.2 0.26 5.6E-06 42.6 14.5 117 2-150 128-244 (260)
76 TIGR00693 thiE thiamine-phosph 96.2 0.52 1.1E-05 38.1 15.4 142 2-150 21-184 (196)
77 TIGR03572 WbuZ glycosyl amidat 96.1 0.087 1.9E-06 44.1 11.0 136 2-149 91-230 (232)
78 PRK13587 1-(5-phosphoribosyl)- 96.1 0.2 4.3E-06 42.6 13.1 133 2-151 93-226 (234)
79 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.1 0.68 1.5E-05 40.2 16.7 132 2-157 99-247 (275)
80 cd04730 NPD_like 2-Nitropropan 96.1 0.12 2.7E-06 42.9 11.7 83 65-153 110-192 (236)
81 TIGR01302 IMP_dehydrog inosine 96.0 0.13 2.9E-06 47.7 12.7 125 2-150 231-360 (450)
82 TIGR03151 enACPred_II putative 96.0 0.15 3.3E-06 45.1 12.5 79 64-150 116-194 (307)
83 cd03332 LMO_FMN L-Lactate 2-mo 96.0 0.23 4.9E-06 45.6 13.8 114 64-190 261-374 (383)
84 cd02933 OYE_like_FMN Old yello 96.0 0.11 2.4E-06 46.5 11.6 133 1-149 159-317 (338)
85 TIGR00007 phosphoribosylformim 96.0 0.067 1.5E-06 44.6 9.6 79 65-151 28-106 (230)
86 PRK08255 salicylyl-CoA 5-hydro 96.0 0.26 5.7E-06 48.6 15.1 126 1-140 558-710 (765)
87 TIGR02090 LEU1_arch isopropylm 96.0 0.13 2.9E-06 46.4 12.0 133 2-156 79-238 (363)
88 TIGR02660 nifV_homocitr homoci 96.0 0.13 2.7E-06 46.5 11.8 121 2-144 80-215 (365)
89 PRK10550 tRNA-dihydrouridine s 95.9 0.29 6.2E-06 43.5 13.5 130 2-149 83-227 (312)
90 PRK13523 NADPH dehydrogenase N 95.9 0.26 5.7E-06 44.2 13.4 126 1-140 149-298 (337)
91 PRK14041 oxaloacetate decarbox 95.8 0.12 2.6E-06 48.6 11.3 120 2-145 103-227 (467)
92 PRK07695 transcriptional regul 95.8 0.83 1.8E-05 37.4 15.1 139 3-150 23-181 (201)
93 cd07947 DRE_TIM_Re_CS Clostrid 95.8 0.16 3.4E-06 44.6 11.3 149 2-168 82-271 (279)
94 PRK08649 inosine 5-monophospha 95.8 0.12 2.6E-06 47.2 10.9 130 2-151 149-290 (368)
95 PF08013 Tagatose_6_P_K: Tagat 95.8 0.026 5.6E-07 52.3 6.5 152 2-157 115-296 (424)
96 PRK01033 imidazole glycerol ph 95.7 0.14 3E-06 44.0 10.7 136 2-150 91-230 (258)
97 cd04737 LOX_like_FMN L-Lactate 95.7 0.36 7.8E-06 43.8 13.7 112 65-189 230-341 (351)
98 cd00452 KDPG_aldolase KDPG and 95.7 0.36 7.9E-06 39.4 12.6 105 2-150 71-175 (190)
99 cd02811 IDI-2_FMN Isopentenyl- 95.7 0.062 1.3E-06 47.9 8.6 78 66-147 128-210 (326)
100 cd07945 DRE_TIM_CMS Leptospira 95.6 0.27 5.9E-06 43.0 12.2 150 2-169 82-260 (280)
101 COG0352 ThiE Thiamine monophos 95.6 0.56 1.2E-05 39.7 13.6 140 2-150 29-190 (211)
102 PRK14024 phosphoribosyl isomer 95.5 0.081 1.7E-06 45.0 8.4 79 63-150 30-108 (241)
103 cd02811 IDI-2_FMN Isopentenyl- 95.5 0.48 1E-05 42.2 13.6 110 65-189 190-319 (326)
104 PRK07807 inosine 5-monophospha 95.5 0.25 5.5E-06 46.5 12.2 122 4-150 236-363 (479)
105 TIGR01304 IMP_DH_rel_2 IMP deh 95.5 0.2 4.3E-06 45.7 11.1 130 2-153 150-291 (369)
106 cd04731 HisF The cyclase subun 95.4 0.44 9.5E-06 40.1 12.5 132 2-150 88-227 (243)
107 cd04732 HisA HisA. Phosphorib 95.4 0.17 3.7E-06 42.1 9.8 80 64-151 28-107 (234)
108 TIGR01037 pyrD_sub1_fam dihydr 95.4 0.32 6.9E-06 42.3 11.9 114 15-150 133-267 (300)
109 PF00682 HMGL-like: HMGL-like 95.4 0.22 4.7E-06 41.6 10.3 119 4-145 77-212 (237)
110 cd07940 DRE_TIM_IPMS 2-isoprop 95.3 0.3 6.5E-06 42.0 11.3 138 2-158 77-245 (268)
111 TIGR01108 oadA oxaloacetate de 95.2 0.25 5.5E-06 47.6 11.4 120 2-145 99-223 (582)
112 TIGR00736 nifR3_rel_arch TIM-b 95.2 0.24 5.1E-06 42.5 10.1 107 22-150 118-224 (231)
113 PRK14040 oxaloacetate decarbox 95.2 0.91 2E-05 44.0 15.1 120 2-145 105-229 (593)
114 PRK11815 tRNA-dihydrouridine s 95.2 0.52 1.1E-05 42.1 12.6 132 2-149 85-236 (333)
115 TIGR00262 trpA tryptophan synt 95.1 1.3 2.8E-05 38.3 14.6 121 2-154 110-235 (256)
116 PLN02898 HMP-P kinase/thiamin- 95.1 0.9 2E-05 42.6 14.6 158 2-177 315-497 (502)
117 PRK07226 fructose-bisphosphate 95.1 1.3 2.9E-05 38.1 14.6 123 2-149 101-234 (267)
118 PRK05437 isopentenyl pyrophosp 95.0 0.15 3.3E-06 46.0 8.9 76 66-145 136-216 (352)
119 cd04731 HisF The cyclase subun 95.0 0.23 5.1E-06 41.8 9.5 78 65-150 27-104 (243)
120 PLN02334 ribulose-phosphate 3- 95.0 0.34 7.4E-06 40.7 10.5 80 65-150 126-206 (229)
121 cd07944 DRE_TIM_HOA_like 4-hyd 95.0 1.7 3.7E-05 37.6 15.0 149 3-175 91-256 (266)
122 PRK00748 1-(5-phosphoribosyl)- 94.9 0.27 5.8E-06 40.9 9.6 79 65-151 30-108 (233)
123 PRK08999 hypothetical protein; 94.9 1.8 4E-05 37.6 15.2 134 2-144 152-306 (312)
124 PRK07259 dihydroorotate dehydr 94.9 0.62 1.4E-05 40.6 12.2 128 3-150 113-267 (301)
125 cd04728 ThiG Thiazole synthase 94.9 0.52 1.1E-05 40.9 11.3 75 64-150 131-208 (248)
126 PRK09282 pyruvate carboxylase 94.9 0.33 7.1E-06 46.9 11.2 120 2-145 104-228 (592)
127 cd07943 DRE_TIM_HOA 4-hydroxy- 94.9 2 4.3E-05 36.8 15.0 145 2-171 93-255 (263)
128 cd04723 HisA_HisF Phosphoribos 94.8 0.98 2.1E-05 38.2 12.8 122 2-150 95-222 (233)
129 PRK09389 (R)-citramalate synth 94.8 0.43 9.3E-06 45.0 11.5 122 2-145 81-217 (488)
130 PRK06843 inosine 5-monophospha 94.8 0.44 9.4E-06 44.1 11.2 125 2-150 160-289 (404)
131 cd02922 FCB2_FMN Flavocytochro 94.7 1.1 2.3E-05 40.5 13.6 113 65-189 222-336 (344)
132 PRK09517 multifunctional thiam 94.7 4.9 0.00011 39.9 19.2 144 2-150 27-198 (755)
133 PLN02274 inosine-5'-monophosph 94.6 0.58 1.3E-05 44.4 12.0 124 2-150 255-384 (505)
134 COG1902 NemA NADH:flavin oxido 94.6 0.84 1.8E-05 41.6 12.6 138 1-149 156-321 (363)
135 TIGR03217 4OH_2_O_val_ald 4-hy 94.6 2.3 5E-05 38.1 15.3 150 2-175 95-262 (333)
136 PTZ00314 inosine-5'-monophosph 94.6 0.59 1.3E-05 44.2 12.0 125 2-150 248-377 (495)
137 PRK02083 imidazole glycerol ph 94.6 0.27 5.9E-06 41.8 8.9 78 65-150 30-107 (253)
138 PLN02535 glycolate oxidase 94.6 0.9 1.9E-05 41.5 12.6 108 64-189 231-343 (364)
139 PRK05848 nicotinate-nucleotide 94.5 0.12 2.7E-06 45.3 6.7 71 2-103 197-269 (273)
140 PF01791 DeoC: DeoC/LacD famil 94.5 0.14 3.1E-06 43.1 6.9 121 2-142 84-224 (236)
141 cd00429 RPE Ribulose-5-phospha 94.4 0.85 1.8E-05 36.9 11.1 78 65-150 116-198 (211)
142 PRK12344 putative alpha-isopro 94.3 0.74 1.6E-05 43.8 12.0 123 3-144 94-231 (524)
143 cd02929 TMADH_HD_FMN Trimethyl 94.3 1.5 3.3E-05 39.7 13.6 128 1-140 157-312 (370)
144 PRK02083 imidazole glycerol ph 94.3 0.87 1.9E-05 38.7 11.4 129 2-150 91-231 (253)
145 PLN02591 tryptophan synthase 94.3 3.2 6.9E-05 35.9 14.9 122 2-153 101-225 (250)
146 PRK06852 aldolase; Validated 94.2 1.3 2.9E-05 39.4 12.7 131 2-148 123-267 (304)
147 PRK00208 thiG thiazole synthas 94.2 0.34 7.5E-06 42.1 8.6 75 64-150 131-208 (250)
148 cd02810 DHOD_DHPD_FMN Dihydroo 94.1 0.83 1.8E-05 39.3 11.1 131 3-151 120-277 (289)
149 cd04724 Tryptophan_synthase_al 94.1 2.7 5.8E-05 35.8 14.1 122 2-154 99-223 (242)
150 PRK11197 lldD L-lactate dehydr 94.1 1.6 3.4E-05 40.1 13.2 114 64-190 253-366 (381)
151 PRK12999 pyruvate carboxylase; 93.9 0.74 1.6E-05 47.8 12.0 125 2-145 635-765 (1146)
152 TIGR02151 IPP_isom_2 isopenten 93.9 0.4 8.6E-06 42.9 8.8 77 67-147 130-211 (333)
153 PRK08227 autoinducer 2 aldolas 93.8 1.4 3.1E-05 38.5 11.9 122 2-150 102-230 (264)
154 PRK05567 inosine 5'-monophosph 93.8 1 2.2E-05 42.3 11.7 85 64-150 277-364 (486)
155 TIGR02708 L_lactate_ox L-lacta 93.7 2.5 5.3E-05 38.7 13.6 113 65-190 237-349 (367)
156 COG1830 FbaB DhnA-type fructos 93.7 1.7 3.8E-05 38.1 12.1 112 2-136 105-223 (265)
157 cd04723 HisA_HisF Phosphoribos 93.7 0.43 9.2E-06 40.4 8.3 77 65-150 35-111 (233)
158 PLN02617 imidazole glycerol ph 93.6 0.56 1.2E-05 44.9 9.8 83 63-151 265-359 (538)
159 PF02581 TMP-TENI: Thiamine mo 93.6 1.7 3.7E-05 35.0 11.4 134 2-144 20-175 (180)
160 TIGR01303 IMP_DH_rel_1 IMP deh 93.5 1.7 3.7E-05 41.0 12.7 120 4-150 234-361 (475)
161 PRK02615 thiamine-phosphate py 93.5 1.5 3.2E-05 39.8 11.9 140 2-150 165-326 (347)
162 PRK05458 guanosine 5'-monophos 93.5 1.7 3.6E-05 39.2 12.0 120 4-150 106-234 (326)
163 PRK00915 2-isopropylmalate syn 93.3 1.3 2.8E-05 42.0 11.6 122 5-145 90-227 (513)
164 TIGR02151 IPP_isom_2 isopenten 93.3 1.7 3.7E-05 38.9 11.8 111 65-189 191-319 (333)
165 cd00331 IGPS Indole-3-glycerol 93.3 1.2 2.6E-05 36.8 10.2 94 38-148 10-103 (217)
166 TIGR02129 hisA_euk phosphoribo 93.2 0.54 1.2E-05 40.9 8.3 71 65-150 37-108 (253)
167 TIGR00737 nifR3_yhdG putative 93.1 3.1 6.6E-05 36.7 13.1 131 2-150 83-226 (319)
168 PRK13587 1-(5-phosphoribosyl)- 93.1 0.47 1E-05 40.3 7.7 78 65-150 31-109 (234)
169 PRK09250 fructose-bisphosphate 93.1 2.8 6E-05 38.2 12.9 128 2-135 154-300 (348)
170 PLN02979 glycolate oxidase 93.1 3 6.4E-05 38.2 13.2 112 65-189 232-343 (366)
171 PRK05437 isopentenyl pyrophosp 92.9 3.7 8E-05 37.1 13.6 111 65-189 198-326 (352)
172 cd03309 CmuC_like CmuC_like. P 92.9 0.72 1.6E-05 41.2 8.8 125 62-189 138-292 (321)
173 TIGR00734 hisAF_rel hisA/hisF 92.8 0.88 1.9E-05 38.4 8.9 77 65-150 141-217 (221)
174 TIGR00735 hisF imidazoleglycer 92.8 0.74 1.6E-05 39.3 8.5 79 65-151 30-108 (254)
175 PF14871 GHL6: Hypothetical gl 92.8 0.29 6.2E-06 38.4 5.5 49 66-114 1-55 (132)
176 PLN02493 probable peroxisomal 92.8 3.4 7.3E-05 37.8 13.2 112 65-189 233-344 (367)
177 TIGR00735 hisF imidazoleglycer 92.8 0.85 1.8E-05 39.0 8.8 137 2-149 91-232 (254)
178 PRK10415 tRNA-dihydrouridine s 92.8 2.8 6.1E-05 37.2 12.4 113 20-150 114-228 (321)
179 TIGR01163 rpe ribulose-phospha 92.7 3.1 6.7E-05 33.7 11.8 121 2-150 74-197 (210)
180 PRK06552 keto-hydroxyglutarate 92.7 3.7 8E-05 34.6 12.4 89 28-150 99-187 (213)
181 PRK15452 putative protease; Pr 92.6 1.5 3.2E-05 41.1 10.7 128 2-158 18-153 (443)
182 COG0269 SgbH 3-hexulose-6-phos 92.6 4.9 0.00011 34.3 13.0 100 26-149 94-195 (217)
183 PRK07428 nicotinate-nucleotide 92.5 0.94 2E-05 40.1 8.9 105 8-150 166-275 (288)
184 TIGR03572 WbuZ glycosyl amidat 92.3 1.3 2.7E-05 37.0 9.2 80 64-151 29-108 (232)
185 COG2069 CdhD CO dehydrogenase/ 92.3 0.17 3.6E-06 45.4 3.9 92 62-158 147-249 (403)
186 PRK13111 trpA tryptophan synth 92.2 7 0.00015 33.9 13.9 123 2-155 112-237 (258)
187 PRK13125 trpA tryptophan synth 92.2 6.6 0.00014 33.3 15.2 124 2-153 96-221 (244)
188 PRK12330 oxaloacetate decarbox 92.0 2.1 4.6E-05 40.7 11.1 121 2-145 105-231 (499)
189 cd00377 ICL_PEPM Members of th 91.8 6.3 0.00014 33.7 13.0 130 2-158 92-238 (243)
190 TIGR01235 pyruv_carbox pyruvat 91.8 1.4 3.1E-05 45.7 10.5 125 3-146 634-764 (1143)
191 PRK01033 imidazole glycerol ph 91.7 1.4 3.1E-05 37.8 9.0 78 64-149 29-106 (258)
192 PRK04128 1-(5-phosphoribosyl)- 91.6 1.1 2.4E-05 38.0 8.0 78 64-150 29-106 (228)
193 cd03316 MR_like Mandelate race 91.5 3.6 7.9E-05 36.4 11.6 116 2-149 149-273 (357)
194 PRK12290 thiE thiamine-phospha 91.3 10 0.00023 35.5 14.7 143 2-150 225-396 (437)
195 TIGR03239 GarL 2-dehydro-3-deo 91.3 0.59 1.3E-05 40.3 6.2 136 1-150 78-234 (249)
196 PF01070 FMN_dh: FMN-dependent 91.2 7.2 0.00016 35.4 13.4 112 65-189 234-345 (356)
197 PF00977 His_biosynth: Histidi 91.2 0.74 1.6E-05 38.9 6.6 81 63-151 27-107 (229)
198 PLN02411 12-oxophytodienoate r 91.1 5.2 0.00011 36.6 12.4 137 1-149 172-345 (391)
199 PF00724 Oxidored_FMN: NADH:fl 91.0 1.2 2.7E-05 39.7 8.2 138 1-149 156-324 (341)
200 PRK14042 pyruvate carboxylase 91.0 11 0.00024 36.7 15.1 119 2-145 104-228 (596)
201 cd02071 MM_CoA_mut_B12_BD meth 91.0 1.6 3.5E-05 33.1 7.8 81 63-152 35-116 (122)
202 PLN02446 (5-phosphoribosyl)-5- 90.9 1.8 3.9E-05 37.9 8.8 72 65-150 43-115 (262)
203 cd04727 pdxS PdxS is a subunit 90.9 0.9 2E-05 40.2 7.0 49 99-150 180-229 (283)
204 TIGR01919 hisA-trpF 1-(5-phosp 90.8 1.7 3.8E-05 37.2 8.6 78 63-149 29-106 (243)
205 KOG2335 tRNA-dihydrouridine sy 90.8 1.9 4.1E-05 39.4 9.0 118 2-148 112-235 (358)
206 PRK05581 ribulose-phosphate 3- 90.7 4.1 8.9E-05 33.3 10.5 78 65-150 120-202 (220)
207 cd03308 CmuA_CmuC_like CmuA_Cm 90.6 1.5 3.3E-05 39.7 8.5 124 62-188 197-346 (378)
208 PRK08195 4-hyroxy-2-oxovalerat 90.5 13 0.00027 33.5 15.3 148 2-173 96-261 (337)
209 cd03465 URO-D_like The URO-D _ 90.5 3.5 7.6E-05 35.8 10.4 123 62-188 151-299 (330)
210 smart00518 AP2Ec AP endonuclea 90.4 6.2 0.00013 33.3 11.6 81 65-148 10-106 (273)
211 PRK02261 methylaspartate mutas 90.2 1.3 2.9E-05 34.7 6.8 79 64-149 40-123 (137)
212 TIGR01305 GMP_reduct_1 guanosi 90.1 2.1 4.6E-05 38.9 8.8 84 64-149 158-244 (343)
213 cd01299 Met_dep_hydrolase_A Me 90.1 10 0.00022 32.9 13.0 82 63-149 115-203 (342)
214 COG0134 TrpC Indole-3-glycerol 90.0 3.5 7.5E-05 36.0 9.8 115 3-150 125-240 (254)
215 cd02809 alpha_hydroxyacid_oxid 90.0 2.3 5E-05 37.2 8.8 70 66-145 127-199 (299)
216 PRK08072 nicotinate-nucleotide 89.9 3.9 8.5E-05 35.9 10.2 103 8-149 158-263 (277)
217 TIGR00973 leuA_bact 2-isopropy 89.9 4.9 0.00011 38.0 11.4 119 7-144 89-223 (494)
218 cd03315 MLE_like Muconate lact 89.8 7.9 0.00017 32.9 11.8 112 2-146 95-210 (265)
219 TIGR00559 pdxJ pyridoxine 5'-p 89.8 8.6 0.00019 33.3 11.9 110 17-149 102-215 (237)
220 cd03319 L-Ala-DL-Glu_epimerase 89.8 9 0.00019 33.4 12.4 68 67-149 190-261 (316)
221 PRK10558 alpha-dehydro-beta-de 89.7 0.98 2.1E-05 39.1 6.2 138 1-150 85-241 (256)
222 PRK13586 1-(5-phosphoribosyl)- 89.7 2 4.4E-05 36.5 8.0 77 64-149 29-105 (232)
223 cd03174 DRE_TIM_metallolyase D 89.6 7 0.00015 32.7 11.2 80 66-151 17-99 (265)
224 TIGR01501 MthylAspMutase methy 89.6 2.8 6.1E-05 33.0 8.2 73 63-144 37-115 (134)
225 TIGR00259 thylakoid_BtpA membr 89.6 1.8 3.9E-05 37.8 7.7 73 66-150 158-231 (257)
226 PRK14114 1-(5-phosphoribosyl)- 89.5 1.7 3.7E-05 37.2 7.5 76 65-149 30-105 (241)
227 PRK10128 2-keto-3-deoxy-L-rham 89.5 0.77 1.7E-05 40.1 5.4 136 1-150 84-241 (267)
228 TIGR00640 acid_CoA_mut_C methy 89.3 1.4 2.9E-05 34.4 6.1 79 63-150 38-117 (132)
229 COG0107 HisF Imidazoleglycerol 89.2 2 4.3E-05 37.3 7.5 78 63-149 28-106 (256)
230 PLN02321 2-isopropylmalate syn 88.9 5.6 0.00012 39.0 11.3 109 19-145 204-318 (632)
231 PF01729 QRPTase_C: Quinolinat 88.7 1.5 3.3E-05 35.7 6.3 60 2-84 95-154 (169)
232 cd07942 DRE_TIM_LeuA Mycobacte 88.7 4.3 9.2E-05 35.7 9.5 115 19-144 114-239 (284)
233 cd00945 Aldolase_Class_I Class 88.6 10 0.00022 29.7 11.6 115 2-141 73-196 (201)
234 cd01573 modD_like ModD; Quinol 88.5 5 0.00011 35.0 9.7 105 8-149 152-260 (272)
235 COG0042 tRNA-dihydrouridine sy 88.4 2.2 4.7E-05 38.2 7.6 79 65-149 152-231 (323)
236 cd00530 PTE Phosphotriesterase 88.4 4.4 9.5E-05 34.6 9.3 126 2-140 40-175 (293)
237 PF01207 Dus: Dihydrouridine s 88.3 1.1 2.4E-05 39.6 5.6 75 68-149 141-216 (309)
238 PRK12858 tagatose 1,6-diphosph 88.2 12 0.00026 33.9 12.2 146 2-158 114-285 (340)
239 PRK05265 pyridoxine 5'-phospha 88.2 13 0.00029 32.1 12.0 109 17-149 105-216 (239)
240 TIGR00977 LeuA_rel 2-isopropyl 88.2 11 0.00024 36.0 12.6 125 3-145 90-229 (526)
241 PRK07455 keto-hydroxyglutarate 88.2 4.3 9.2E-05 33.3 8.7 135 2-150 32-184 (187)
242 PRK05848 nicotinate-nucleotide 88.0 4.1 8.8E-05 35.8 8.9 105 8-150 152-261 (273)
243 PRK09016 quinolinate phosphori 87.7 1.9 4E-05 38.4 6.7 71 2-104 223-293 (296)
244 cd00959 DeoC 2-deoxyribose-5-p 87.7 12 0.00026 30.8 11.2 117 2-143 77-200 (203)
245 cd04739 DHOD_like Dihydroorota 87.7 18 0.00038 32.2 12.9 82 64-151 174-271 (325)
246 TIGR03234 OH-pyruv-isom hydrox 87.4 4.5 9.7E-05 33.8 8.6 144 2-151 22-182 (254)
247 PF05690 ThiG: Thiazole biosyn 87.4 8.2 0.00018 33.6 10.1 74 65-150 132-208 (247)
248 PLN03228 methylthioalkylmalate 87.3 11 0.00023 36.0 11.9 120 7-145 181-317 (503)
249 COG3010 NanE Putative N-acetyl 87.1 10 0.00022 32.5 10.4 115 4-149 95-212 (229)
250 COG2070 Dioxygenases related t 87.0 6.2 0.00013 35.6 9.7 83 63-150 133-217 (336)
251 PF00072 Response_reg: Respons 86.9 4.9 0.00011 28.3 7.5 70 63-143 28-97 (112)
252 PRK01060 endonuclease IV; Prov 86.8 5.8 0.00013 33.6 9.1 57 65-124 12-71 (281)
253 TIGR02320 PEP_mutase phosphoen 86.7 17 0.00037 32.0 12.1 132 2-158 100-252 (285)
254 PRK03170 dihydrodipicolinate s 86.5 10 0.00022 32.8 10.5 115 2-138 30-154 (292)
255 cd02911 arch_FMN Archeal FMN-b 86.4 4 8.7E-05 34.7 7.8 70 66-148 153-222 (233)
256 PRK07565 dihydroorotate dehydr 86.3 18 0.00039 32.1 12.2 85 64-151 176-273 (334)
257 PRK06096 molybdenum transport 86.3 1.6 3.4E-05 38.6 5.4 62 2-90 204-267 (284)
258 PRK09875 putative hydrolase; P 86.3 7.9 0.00017 34.2 9.8 129 5-146 45-185 (292)
259 cd02812 PcrB_like PcrB_like pr 86.2 18 0.00039 30.8 11.6 137 3-151 21-209 (219)
260 cd02940 DHPD_FMN Dihydropyrimi 86.2 2.6 5.6E-05 36.9 6.7 82 65-150 180-285 (299)
261 TIGR01502 B_methylAsp_ase meth 86.1 3.6 7.9E-05 38.1 7.9 112 3-125 221-357 (408)
262 CHL00200 trpA tryptophan synth 86.0 22 0.00048 30.9 16.6 122 2-154 114-239 (263)
263 COG5016 Pyruvate/oxaloacetate 85.8 6.8 0.00015 36.7 9.3 117 2-144 106-229 (472)
264 cd00954 NAL N-Acetylneuraminic 85.6 23 0.0005 30.6 12.3 111 2-137 29-154 (288)
265 TIGR01418 PEP_synth phosphoeno 85.6 5.9 0.00013 39.6 9.6 135 2-157 621-777 (782)
266 cd00019 AP2Ec AP endonuclease 85.6 5.3 0.00011 34.0 8.2 149 2-151 18-181 (279)
267 PRK06464 phosphoenolpyruvate s 85.6 5.9 0.00013 39.7 9.6 138 2-158 628-785 (795)
268 PRK09140 2-dehydro-3-deoxy-6-p 85.5 7.6 0.00017 32.4 8.9 73 65-151 112-184 (206)
269 PRK15108 biotin synthase; Prov 85.2 6.6 0.00014 35.3 9.0 88 63-157 74-164 (345)
270 PRK14114 1-(5-phosphoribosyl)- 85.2 18 0.00039 31.0 11.2 130 2-149 90-226 (241)
271 cd01568 QPRTase_NadC Quinolina 85.0 15 0.00032 32.0 10.8 103 8-148 151-257 (269)
272 cd01572 QPRTase Quinolinate ph 85.0 11 0.00025 32.7 10.1 102 8-148 152-256 (268)
273 PRK06106 nicotinate-nucleotide 84.8 3 6.4E-05 36.9 6.4 70 2-103 209-278 (281)
274 TIGR02317 prpB methylisocitrat 84.6 20 0.00043 31.7 11.5 53 101-158 185-241 (285)
275 PRK11572 copper homeostasis pr 84.5 13 0.00027 32.4 10.0 73 64-147 127-199 (248)
276 PRK05742 nicotinate-nucleotide 84.4 3.6 7.9E-05 36.1 6.8 71 2-104 204-274 (277)
277 PRK08385 nicotinate-nucleotide 84.2 3 6.4E-05 36.8 6.1 71 2-103 197-271 (278)
278 PF00218 IGPS: Indole-3-glycer 84.1 16 0.00036 31.7 10.6 116 2-150 126-242 (254)
279 TIGR02319 CPEP_Pphonmut carbox 84.1 24 0.00053 31.3 11.9 126 2-158 100-245 (294)
280 PTZ00170 D-ribulose-5-phosphat 84.0 25 0.00053 29.7 13.8 116 3-150 84-205 (228)
281 PRK07896 nicotinate-nucleotide 84.0 5.7 0.00012 35.2 7.8 71 2-103 214-286 (289)
282 cd01310 TatD_DNAse TatD like p 84.0 2.7 5.8E-05 34.5 5.5 118 3-139 24-143 (251)
283 PF13714 PEP_mutase: Phosphoen 84.0 13 0.00028 31.9 9.8 71 70-158 161-231 (238)
284 PRK09195 gatY tagatose-bisphos 83.9 2.5 5.4E-05 37.3 5.5 95 27-146 6-104 (284)
285 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.8 2.4 5.3E-05 36.7 5.4 77 70-149 26-114 (275)
286 PLN02433 uroporphyrinogen deca 83.7 6.2 0.00013 35.2 8.1 119 62-188 162-307 (345)
287 cd01292 metallo-dependent_hydr 83.6 21 0.00046 28.6 11.4 115 2-128 43-158 (275)
288 PRK11320 prpB 2-methylisocitra 83.2 15 0.00033 32.5 10.2 55 101-158 190-246 (292)
289 cd01298 ATZ_TRZ_like TRZ/ATZ f 83.1 14 0.00031 32.5 10.2 103 2-123 109-214 (411)
290 COG0119 LeuA Isopropylmalate/h 83.1 16 0.00035 33.9 10.7 123 3-145 85-222 (409)
291 PF03060 NMO: Nitronate monoox 83.1 15 0.00032 32.7 10.2 78 64-149 143-222 (330)
292 cd03321 mandelate_racemase Man 83.0 22 0.00047 31.7 11.3 70 65-149 197-270 (355)
293 cd02922 FCB2_FMN Flavocytochro 83.0 9.8 0.00021 34.4 9.1 73 69-146 135-241 (344)
294 cd00405 PRAI Phosphoribosylant 83.0 5.6 0.00012 32.6 7.0 66 77-150 119-185 (203)
295 PF00977 His_biosynth: Histidi 83.0 7.6 0.00016 32.7 8.0 83 63-149 105-223 (229)
296 PRK05742 nicotinate-nucleotide 83.0 15 0.00033 32.2 10.1 103 8-149 160-264 (277)
297 TIGR00433 bioB biotin syntheta 82.9 24 0.00052 30.2 11.2 119 4-141 75-202 (296)
298 PRK12581 oxaloacetate decarbox 82.9 8.6 0.00019 36.4 8.9 122 2-145 113-237 (468)
299 PRK12737 gatY tagatose-bisphos 82.7 2.2 4.7E-05 37.7 4.7 97 26-146 5-104 (284)
300 COG2185 Sbm Methylmalonyl-CoA 82.6 6.6 0.00014 31.5 6.9 83 62-153 47-130 (143)
301 TIGR01334 modD putative molybd 82.6 3.5 7.7E-05 36.3 5.9 59 2-85 203-263 (277)
302 COG3142 CutC Uncharacterized p 82.5 14 0.0003 32.0 9.3 121 3-149 82-203 (241)
303 PRK11197 lldD L-lactate dehydr 82.3 3.1 6.8E-05 38.2 5.7 43 98-145 230-272 (381)
304 cd03329 MR_like_4 Mandelate ra 82.2 33 0.00072 30.7 12.2 113 2-146 153-271 (368)
305 COG0157 NadC Nicotinate-nucleo 82.1 5.8 0.00013 35.1 7.0 71 2-103 203-274 (280)
306 TIGR01858 tag_bisphos_ald clas 82.0 3.1 6.7E-05 36.7 5.4 32 116-147 72-103 (282)
307 TIGR00078 nadC nicotinate-nucl 81.9 23 0.00049 30.8 10.7 101 8-147 148-251 (265)
308 PRK04147 N-acetylneuraminate l 81.9 22 0.00048 30.8 10.7 112 2-138 32-157 (293)
309 PF06309 Torsin: Torsin; Inte 81.8 3.1 6.7E-05 32.6 4.8 32 106-137 39-74 (127)
310 TIGR01430 aden_deam adenosine 81.7 35 0.00076 29.8 12.1 67 67-148 198-272 (324)
311 PRK07428 nicotinate-nucleotide 81.6 5 0.00011 35.5 6.6 71 2-103 211-283 (288)
312 PRK12394 putative metallo-depe 81.6 20 0.00044 32.0 10.6 113 3-125 80-195 (379)
313 cd00003 PNPsynthase Pyridoxine 81.6 28 0.00061 30.1 10.9 109 17-149 102-214 (234)
314 PRK12738 kbaY tagatose-bisphos 81.5 3.4 7.4E-05 36.5 5.5 97 27-147 6-105 (286)
315 PLN02446 (5-phosphoribosyl)-5- 81.4 29 0.00063 30.4 11.1 131 2-149 99-241 (262)
316 PF01070 FMN_dh: FMN-dependent 81.4 2.5 5.4E-05 38.3 4.7 44 98-146 210-253 (356)
317 cd00019 AP2Ec AP endonuclease 81.3 14 0.0003 31.4 9.0 79 65-146 10-105 (279)
318 PRK03512 thiamine-phosphate py 81.3 31 0.00066 28.8 14.5 141 2-150 27-190 (211)
319 PRK06543 nicotinate-nucleotide 80.9 3.8 8.3E-05 36.2 5.5 70 2-103 208-277 (281)
320 COG0826 Collagenase and relate 80.7 18 0.00039 32.8 10.0 102 27-155 51-153 (347)
321 PRK12857 fructose-1,6-bisphosp 80.5 3.9 8.4E-05 36.1 5.5 40 106-148 67-106 (284)
322 TIGR00742 yjbN tRNA dihydrouri 80.5 13 0.00028 33.1 8.9 116 19-150 103-227 (318)
323 COG1304 idi Isopentenyl diphos 80.3 31 0.00066 31.5 11.3 114 64-190 226-339 (360)
324 PRK08508 biotin synthase; Prov 80.1 23 0.00049 30.7 10.1 84 65-154 40-127 (279)
325 cd07944 DRE_TIM_HOA_like 4-hyd 80.0 13 0.00029 32.0 8.6 79 70-149 25-105 (266)
326 TIGR00078 nadC nicotinate-nucl 79.9 5.9 0.00013 34.5 6.4 70 2-103 193-262 (265)
327 cd01572 QPRTase Quinolinate ph 79.5 8.8 0.00019 33.4 7.3 70 2-103 197-266 (268)
328 PRK13307 bifunctional formalde 79.5 52 0.0011 30.4 15.2 118 2-150 245-362 (391)
329 PRK08610 fructose-bisphosphate 79.5 4.1 9E-05 36.0 5.3 99 27-146 6-107 (286)
330 cd02808 GltS_FMN Glutamate syn 79.4 50 0.0011 30.2 13.0 122 65-189 225-379 (392)
331 cd00947 TBP_aldolase_IIB Tagat 79.4 4.3 9.3E-05 35.7 5.4 32 116-147 69-100 (276)
332 cd03307 Mta_CmuA_like MtaA_Cmu 79.3 9.6 0.00021 33.4 7.6 119 62-185 154-297 (326)
333 cd03323 D-glucarate_dehydratas 79.2 51 0.0011 30.1 13.0 109 6-147 183-292 (395)
334 PF00834 Ribul_P_3_epim: Ribul 79.2 6.8 0.00015 32.7 6.3 81 63-149 10-90 (201)
335 PLN02716 nicotinate-nucleotide 79.0 31 0.00066 31.0 10.6 115 8-148 170-292 (308)
336 CHL00162 thiG thiamin biosynth 78.6 20 0.00044 31.5 9.2 73 66-150 147-222 (267)
337 cd04738 DHOD_2_like Dihydrooro 78.6 9.3 0.0002 33.9 7.3 73 74-150 225-313 (327)
338 PF00478 IMPDH: IMP dehydrogen 78.4 16 0.00035 33.3 8.9 123 3-149 116-243 (352)
339 PRK11840 bifunctional sulfur c 78.2 26 0.00057 31.7 10.0 74 65-150 206-282 (326)
340 PRK06559 nicotinate-nucleotide 78.1 5.3 0.00012 35.5 5.6 70 2-103 212-281 (290)
341 PRK06806 fructose-bisphosphate 78.1 4.9 0.00011 35.3 5.3 97 26-146 5-104 (281)
342 PRK04180 pyridoxal biosynthesi 78.0 14 0.00031 32.9 8.1 50 98-150 188-238 (293)
343 COG0191 Fba Fructose/tagatose 77.7 5.1 0.00011 35.6 5.3 96 28-147 7-106 (286)
344 PF03932 CutC: CutC family; I 77.6 14 0.00031 31.0 7.8 74 63-146 125-199 (201)
345 PRK06978 nicotinate-nucleotide 77.5 9.4 0.0002 34.0 7.0 70 1-102 219-288 (294)
346 cd06557 KPHMT-like Ketopantoat 77.3 19 0.0004 31.3 8.6 114 14-158 51-193 (254)
347 cd01571 NAPRTase_B Nicotinate 77.2 15 0.00033 32.5 8.2 72 7-103 211-285 (302)
348 PRK06801 hypothetical protein; 77.0 5.4 0.00012 35.2 5.3 97 26-146 5-104 (286)
349 PF05889 SLA_LP_auto_ag: Solub 76.8 3.5 7.6E-05 38.1 4.2 77 63-145 137-218 (389)
350 TIGR03217 4OH_2_O_val_ald 4-hy 76.8 11 0.00024 33.8 7.3 84 64-151 20-112 (333)
351 PRK06559 nicotinate-nucleotide 76.7 39 0.00084 30.1 10.6 105 8-148 167-271 (290)
352 cd00717 URO-D Uroporphyrinogen 76.6 15 0.00033 32.2 8.1 121 61-188 159-305 (335)
353 PRK09997 hydroxypyruvate isome 76.6 15 0.00033 30.8 7.9 143 2-151 23-183 (258)
354 PRK06852 aldolase; Validated 76.4 9.2 0.0002 34.2 6.6 77 63-157 57-156 (304)
355 cd03332 LMO_FMN L-Lactate 2-mo 76.4 6.2 0.00013 36.3 5.7 44 98-146 238-281 (383)
356 PRK07107 inosine 5-monophospha 76.1 58 0.0013 31.0 12.2 126 3-150 250-385 (502)
357 TIGR01859 fruc_bis_ald_ fructo 76.0 6.4 0.00014 34.5 5.5 31 116-146 73-104 (282)
358 PF03437 BtpA: BtpA family; I 75.9 12 0.00026 32.5 7.1 71 67-150 160-231 (254)
359 PRK08185 hypothetical protein; 75.9 6.6 0.00014 34.7 5.5 32 115-146 67-98 (283)
360 TIGR01919 hisA-trpF 1-(5-phosp 75.9 49 0.0011 28.2 12.4 131 2-150 91-229 (243)
361 cd00951 KDGDH 5-dehydro-4-deox 75.8 53 0.0011 28.5 11.4 111 2-137 29-148 (289)
362 cd02803 OYE_like_FMN_family Ol 75.7 6.9 0.00015 34.2 5.6 127 19-148 71-250 (327)
363 TIGR00433 bioB biotin syntheta 75.7 44 0.00096 28.5 10.6 134 19-158 5-152 (296)
364 cd02072 Glm_B12_BD B12 binding 75.6 20 0.00044 28.0 7.6 74 63-143 35-112 (128)
365 PLN02716 nicotinate-nucleotide 75.3 11 0.00024 33.8 6.8 76 2-103 218-302 (308)
366 TIGR00167 cbbA ketose-bisphosp 75.2 6.3 0.00014 34.8 5.2 97 26-147 5-108 (288)
367 PRK02714 O-succinylbenzoate sy 74.6 60 0.0013 28.6 12.8 68 65-147 174-248 (320)
368 TIGR00035 asp_race aspartate r 74.3 29 0.00062 29.0 8.9 60 67-146 64-123 (229)
369 PRK07084 fructose-bisphosphate 74.3 6.2 0.00013 35.6 5.0 101 25-147 10-116 (321)
370 PRK05286 dihydroorotate dehydr 74.3 8.5 0.00018 34.5 5.9 78 70-150 230-322 (344)
371 cd07939 DRE_TIM_NifV Streptomy 74.0 31 0.00067 29.4 9.1 70 70-151 25-94 (259)
372 cd03314 MAL Methylaspartate am 73.9 10 0.00023 34.6 6.5 112 3-125 185-321 (369)
373 PRK09856 fructoselysine 3-epim 73.9 49 0.0011 27.7 10.3 82 3-94 99-188 (275)
374 COG0106 HisA Phosphoribosylfor 73.8 60 0.0013 28.2 13.0 129 2-150 92-225 (241)
375 TIGR00343 pyridoxal 5'-phospha 73.7 8.1 0.00018 34.3 5.5 50 98-150 182-232 (287)
376 TIGR03247 glucar-dehydr glucar 73.7 62 0.0013 30.2 11.6 107 6-143 195-305 (441)
377 PRK07998 gatY putative fructos 73.6 8 0.00017 34.2 5.5 31 116-146 74-104 (283)
378 PRK06151 N-ethylammeline chlor 73.4 39 0.00084 31.5 10.3 52 67-124 188-242 (488)
379 COG2200 Rtn c-di-GMP phosphodi 73.3 7.3 0.00016 33.3 5.1 59 5-82 169-231 (256)
380 PRK06252 methylcobalamin:coenz 73.0 19 0.00041 31.6 7.8 118 62-184 163-305 (339)
381 PRK08883 ribulose-phosphate 3- 73.0 56 0.0012 27.5 10.3 81 64-150 116-199 (220)
382 PF01116 F_bP_aldolase: Fructo 72.9 4.5 9.7E-05 35.7 3.7 40 105-147 65-104 (287)
383 TIGR01521 FruBisAldo_II_B fruc 72.9 7.7 0.00017 35.3 5.3 98 27-148 4-105 (347)
384 TIGR01306 GMP_reduct_2 guanosi 72.8 18 0.00038 32.6 7.5 80 65-149 146-230 (321)
385 PRK08195 4-hyroxy-2-oxovalerat 72.7 17 0.00036 32.7 7.4 82 64-149 21-111 (337)
386 COG2022 ThiG Uncharacterized e 72.3 10 0.00022 33.1 5.6 74 66-151 140-216 (262)
387 cd00950 DHDPS Dihydrodipicolin 72.1 62 0.0013 27.7 11.7 112 2-138 29-153 (284)
388 cd02810 DHOD_DHPD_FMN Dihydroo 72.1 34 0.00074 29.3 9.0 73 70-146 116-196 (289)
389 TIGR01178 ade adenine deaminas 71.9 50 0.0011 31.7 10.9 132 2-148 72-206 (552)
390 cd04722 TIM_phosphate_binding 71.5 26 0.00056 26.9 7.5 76 68-149 15-94 (200)
391 cd03326 MR_like_1 Mandelate ra 71.3 82 0.0018 28.7 14.1 115 3-149 171-293 (385)
392 PRK06106 nicotinate-nucleotide 71.1 28 0.0006 30.8 8.3 103 8-149 164-269 (281)
393 TIGR01496 DHPS dihydropteroate 71.1 26 0.00056 30.2 8.0 84 62-149 17-105 (257)
394 TIGR01464 hemE uroporphyrinoge 71.1 29 0.00062 30.6 8.5 120 62-188 163-308 (338)
395 PF01261 AP_endonuc_2: Xylose 71.1 47 0.001 25.9 9.8 147 2-151 3-169 (213)
396 TIGR01304 IMP_DH_rel_2 IMP deh 71.0 29 0.00063 31.8 8.6 72 68-146 145-216 (369)
397 cd00408 DHDPS-like Dihydrodipi 70.6 66 0.0014 27.3 11.1 111 2-137 26-149 (281)
398 cd06556 ICL_KPHMT Members of t 70.4 39 0.00085 29.0 8.9 80 14-125 51-134 (240)
399 TIGR01768 GGGP-family geranylg 70.4 15 0.00033 31.4 6.3 50 99-151 164-213 (223)
400 PF09370 TIM-br_sig_trns: TIM- 70.3 23 0.0005 31.2 7.5 112 3-137 104-235 (268)
401 TIGR02311 HpaI 2,4-dihydroxyhe 70.3 20 0.00043 30.7 7.1 139 1-158 78-246 (249)
402 PF01208 URO-D: Uroporphyrinog 70.2 5.7 0.00012 34.8 3.8 120 61-185 164-308 (343)
403 PRK12330 oxaloacetate decarbox 70.2 22 0.00048 33.9 7.9 79 70-151 32-122 (499)
404 PRK08318 dihydropyrimidine deh 69.8 16 0.00034 33.5 6.7 84 65-151 180-287 (420)
405 PRK09590 celB cellobiose phosp 69.6 22 0.00049 26.6 6.4 64 26-121 17-80 (104)
406 TIGR02321 Pphn_pyruv_hyd phosp 69.4 23 0.00049 31.3 7.4 77 66-145 24-109 (290)
407 cd04741 DHOD_1A_like Dihydroor 69.1 28 0.00061 30.4 7.9 52 98-150 223-276 (294)
408 cd00465 URO-D_CIMS_like The UR 69.1 43 0.00093 28.6 9.0 159 22-187 84-275 (306)
409 TIGR01463 mtaA_cmuA methyltran 69.1 32 0.0007 30.2 8.4 120 62-184 163-307 (340)
410 PRK12331 oxaloacetate decarbox 69.0 15 0.00033 34.4 6.5 75 70-149 31-119 (448)
411 PRK03739 2-isopropylmalate syn 68.9 52 0.0011 31.7 10.2 115 19-144 143-268 (552)
412 PLN02826 dihydroorotate dehydr 68.9 34 0.00073 31.8 8.7 82 66-151 277-375 (409)
413 PRK08385 nicotinate-nucleotide 68.8 79 0.0017 27.8 10.6 103 8-149 154-262 (278)
414 PRK07709 fructose-bisphosphate 68.4 12 0.00025 33.2 5.3 31 116-146 77-107 (285)
415 cd01467 vWA_BatA_type VWA BatA 68.2 17 0.00036 28.4 5.8 49 65-113 119-168 (180)
416 PRK14847 hypothetical protein; 68.2 46 0.001 30.1 9.2 108 18-144 144-270 (333)
417 COG0821 gcpE 1-hydroxy-2-methy 68.0 14 0.0003 33.8 5.7 96 74-186 45-162 (361)
418 PTZ00372 endonuclease 4-like p 67.9 34 0.00075 31.9 8.5 20 27-46 119-138 (413)
419 PRK15108 biotin synthase; Prov 67.9 56 0.0012 29.3 9.7 112 3-133 88-203 (345)
420 PRK13209 L-xylulose 5-phosphat 67.8 36 0.00079 28.7 8.2 81 65-147 21-120 (283)
421 cd01317 DHOase_IIa Dihydroorot 67.6 45 0.00097 29.7 9.1 102 2-124 40-141 (374)
422 PRK13209 L-xylulose 5-phosphat 67.5 26 0.00057 29.6 7.3 78 3-93 108-193 (283)
423 cd03329 MR_like_4 Mandelate ra 67.5 20 0.00044 32.1 6.8 100 10-124 191-300 (368)
424 PRK00311 panB 3-methyl-2-oxobu 67.5 30 0.00065 30.2 7.7 114 14-158 54-196 (264)
425 TIGR00674 dapA dihydrodipicoli 66.9 83 0.0018 27.1 11.9 109 2-138 27-151 (285)
426 PRK08203 hydroxydechloroatrazi 66.9 79 0.0017 28.9 10.7 112 2-124 113-235 (451)
427 TIGR03569 NeuB_NnaB N-acetylne 66.8 51 0.0011 29.7 9.2 77 25-136 76-152 (329)
428 PRK09196 fructose-1,6-bisphosp 66.8 12 0.00027 34.0 5.3 100 26-148 5-107 (347)
429 PRK09282 pyruvate carboxylase 66.7 21 0.00045 34.7 7.1 78 69-149 30-119 (592)
430 PRK06256 biotin synthase; Vali 66.5 65 0.0014 28.2 9.8 124 3-145 103-235 (336)
431 PLN02493 probable peroxisomal 66.4 14 0.0003 33.9 5.6 44 98-146 209-252 (367)
432 PRK04169 geranylgeranylglycery 66.4 19 0.0004 30.9 6.0 142 2-150 27-217 (232)
433 cd01302 Cyclic_amidohydrolases 66.2 85 0.0018 27.7 10.5 104 2-124 32-136 (337)
434 PRK09357 pyrC dihydroorotase; 66.1 49 0.0011 29.9 9.1 102 2-125 79-181 (423)
435 KOG2368 Hydroxymethylglutaryl- 66.1 93 0.002 27.3 11.9 159 2-171 101-289 (316)
436 TIGR01303 IMP_DH_rel_1 IMP deh 66.1 21 0.00045 33.7 6.8 66 67-144 227-292 (475)
437 cd01573 modD_like ModD; Quinol 66.0 37 0.00081 29.6 8.0 70 2-103 198-269 (272)
438 COG2876 AroA 3-deoxy-D-arabino 66.0 27 0.00059 30.9 7.0 75 28-137 99-173 (286)
439 PLN02460 indole-3-glycerol-pho 65.9 77 0.0017 28.8 10.1 120 3-151 199-322 (338)
440 PF02679 ComA: (2R)-phospho-3- 65.7 30 0.00064 30.0 7.2 101 2-112 92-195 (244)
441 cd04737 LOX_like_FMN L-Lactate 65.6 44 0.00095 30.4 8.6 43 98-145 206-248 (351)
442 cd04733 OYE_like_2_FMN Old yel 65.5 74 0.0016 28.2 10.0 127 20-147 77-257 (338)
443 KOG3157 Proline synthetase co- 65.3 9.8 0.00021 32.7 4.0 59 85-150 172-234 (244)
444 TIGR03586 PseI pseudaminic aci 64.8 65 0.0014 29.0 9.5 78 24-136 76-153 (327)
445 PRK08649 inosine 5-monophospha 64.7 44 0.00096 30.5 8.5 71 69-146 145-215 (368)
446 PLN02979 glycolate oxidase 64.7 16 0.00035 33.5 5.6 44 98-146 208-251 (366)
447 TIGR02967 guan_deamin guanine 64.6 75 0.0016 28.4 10.0 107 2-122 98-206 (401)
448 PTZ00314 inosine-5'-monophosph 64.5 27 0.0006 33.0 7.3 66 68-145 244-309 (495)
449 PRK06843 inosine 5-monophospha 64.5 39 0.00084 31.4 8.1 71 64-146 149-222 (404)
450 cd03327 MR_like_2 Mandelate ra 64.2 1E+02 0.0023 27.2 12.4 67 65-146 182-252 (341)
451 TIGR00734 hisAF_rel hisA/hisF 64.1 39 0.00084 28.4 7.5 76 64-150 35-112 (221)
452 cd06557 KPHMT-like Ketopantoat 64.1 33 0.00071 29.8 7.2 89 66-157 21-123 (254)
453 PRK12581 oxaloacetate decarbox 64.0 12 0.00026 35.4 4.8 80 68-150 38-129 (468)
454 TIGR02660 nifV_homocitr homoci 63.8 61 0.0013 29.2 9.2 71 70-152 28-98 (365)
455 PRK13802 bifunctional indole-3 63.8 1.5E+02 0.0034 29.5 12.5 118 2-152 128-246 (695)
456 COG0434 SgcQ Predicted TIM-bar 63.6 29 0.00064 30.3 6.7 72 66-150 164-236 (263)
457 PRK00509 argininosuccinate syn 63.5 19 0.00041 33.4 5.9 60 89-152 82-147 (399)
458 PRK08508 biotin synthase; Prov 63.3 68 0.0015 27.7 9.1 113 3-135 52-171 (279)
459 TIGR02090 LEU1_arch isopropylm 63.2 67 0.0015 29.0 9.3 68 70-149 27-94 (363)
460 cd04742 NPD_FabD 2-Nitropropan 63.1 38 0.00083 31.6 7.9 80 66-151 165-253 (418)
461 PRK00311 panB 3-methyl-2-oxobu 63.0 33 0.00072 29.9 7.1 79 66-147 24-116 (264)
462 TIGR01417 PTS_I_fam phosphoeno 62.9 1.5E+02 0.0032 28.7 12.0 142 2-159 378-538 (565)
463 PRK13523 NADPH dehydrogenase N 62.9 84 0.0018 28.1 9.9 125 20-148 76-249 (337)
464 PRK05835 fructose-bisphosphate 62.9 14 0.0003 33.1 4.7 96 27-146 5-104 (307)
465 TIGR02534 mucon_cyclo muconate 62.8 1.1E+02 0.0025 27.2 11.6 112 6-149 156-271 (368)
466 TIGR01769 GGGP geranylgeranylg 62.8 61 0.0013 27.2 8.4 132 2-146 19-205 (205)
467 PRK05567 inosine 5'-monophosph 62.8 29 0.00062 32.6 7.1 67 68-145 230-296 (486)
468 cd07943 DRE_TIM_HOA 4-hydroxy- 62.7 60 0.0013 27.7 8.6 73 71-150 28-109 (263)
469 PRK11572 copper homeostasis pr 62.6 16 0.00034 31.8 4.9 63 72-143 80-145 (248)
470 PRK07475 hypothetical protein; 62.5 9.1 0.0002 32.7 3.5 63 63-145 63-127 (245)
471 cd03328 MR_like_3 Mandelate ra 62.2 1.2E+02 0.0025 27.1 11.9 68 65-147 193-266 (352)
472 PRK13210 putative L-xylulose 5 62.2 62 0.0013 27.2 8.5 75 3-90 103-185 (284)
473 cd03325 D-galactonate_dehydrat 62.2 22 0.00047 31.7 6.0 110 2-127 167-290 (352)
474 cd03324 rTSbeta_L-fuconate_deh 62.2 24 0.00052 32.6 6.4 110 2-127 231-355 (415)
475 COG1082 IolE Sugar phosphate i 62.0 43 0.00093 27.8 7.5 78 64-149 14-107 (274)
476 PLN02424 ketopantoate hydroxym 62.0 58 0.0013 29.6 8.6 114 15-158 75-217 (332)
477 PRK13399 fructose-1,6-bisphosp 61.5 19 0.0004 32.9 5.4 97 26-148 5-107 (347)
478 PRK11858 aksA trans-homoaconit 61.4 74 0.0016 28.9 9.3 71 71-153 32-102 (378)
479 PRK02227 hypothetical protein; 61.3 10 0.00022 32.8 3.5 90 3-113 140-234 (238)
480 PF04476 DUF556: Protein of un 61.3 9.1 0.0002 33.1 3.2 90 3-112 140-234 (235)
481 PRK02382 dihydroorotase; Provi 61.2 29 0.00062 31.9 6.7 104 2-126 80-184 (443)
482 PF02110 HK: Hydroxyethylthiaz 61.2 7.1 0.00015 33.8 2.5 75 63-147 36-117 (246)
483 PTZ00170 D-ribulose-5-phosphat 61.0 67 0.0014 27.0 8.4 79 65-148 19-97 (228)
484 TIGR02990 ectoine_eutA ectoine 60.8 74 0.0016 27.2 8.8 74 27-120 134-210 (239)
485 cd00429 RPE Ribulose-5-phospha 60.7 37 0.0008 27.2 6.6 46 64-112 11-56 (211)
486 cd01568 QPRTase_NadC Quinolina 59.7 30 0.00064 30.1 6.2 71 2-103 196-267 (269)
487 TIGR01108 oadA oxaloacetate de 59.5 36 0.00079 33.0 7.3 77 70-149 26-114 (582)
488 PF10566 Glyco_hydro_97: Glyco 59.2 38 0.00081 29.8 6.8 109 3-125 41-159 (273)
489 PRK08072 nicotinate-nucleotide 59.1 38 0.00083 29.7 6.8 70 2-103 203-272 (277)
490 cd02932 OYE_YqiM_FMN Old yello 59.0 52 0.0011 29.1 7.8 31 20-50 72-102 (336)
491 PRK06543 nicotinate-nucleotide 58.8 1.3E+02 0.0028 26.6 11.0 102 8-148 159-267 (281)
492 PRK13586 1-(5-phosphoribosyl)- 58.8 1.1E+02 0.0024 25.9 12.2 126 2-150 90-222 (232)
493 PRK13210 putative L-xylulose 5 58.7 83 0.0018 26.4 8.7 80 65-146 16-114 (284)
494 TIGR02814 pfaD_fam PfaD family 58.5 52 0.0011 31.0 7.9 72 75-151 178-258 (444)
495 PLN02617 imidazole glycerol ph 58.2 49 0.0011 31.8 7.9 65 65-137 438-502 (538)
496 PRK09237 dihydroorotase; Provi 58.1 1.4E+02 0.0029 26.6 11.4 124 2-139 76-205 (380)
497 TIGR01290 nifB nitrogenase cof 58.0 85 0.0018 29.3 9.3 74 64-148 59-142 (442)
498 cd07940 DRE_TIM_IPMS 2-isoprop 57.9 98 0.0021 26.4 9.1 72 66-149 18-96 (268)
499 TIGR03234 OH-pyruv-isom hydrox 57.9 47 0.001 27.6 7.0 63 25-95 123-185 (254)
500 PRK09016 quinolinate phosphori 57.8 51 0.0011 29.4 7.4 65 67-148 218-282 (296)
No 1
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=1.1e-73 Score=497.51 Aligned_cols=188 Identities=44% Similarity=0.666 Sum_probs=176.1
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++||+||||||+|||.|++......+..||||+||++|+++||||
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 170 (284)
T PRK09195 91 AQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGID 170 (284)
T ss_pred HHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcC
Confidence 47999999999999999999999999999999999999999999999999888744333346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|||++||++||+||||+|+++.+|.+++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 246 (284)
T PRK09195 171 SLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNY 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++++++++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 284 (284)
T PRK09195 247 LTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCEGKA 284 (284)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 2
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=1.1e-73 Score=497.86 Aligned_cols=188 Identities=39% Similarity=0.624 Sum_probs=175.5
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+.........||||++|++|+++||||
T Consensus 91 ~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD 170 (286)
T PRK12738 91 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVD 170 (286)
T ss_pred HHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999999999999999999887643222245799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ +|+||||||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~ 246 (286)
T PRK12738 171 SLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAW 246 (286)
T ss_pred EEEeccCcccCCCCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 5999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++++++++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 284 (286)
T PRK12738 247 FAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI 284 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 3
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=100.00 E-value=1.4e-73 Score=496.43 Aligned_cols=188 Identities=41% Similarity=0.653 Sum_probs=175.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||+|||+|||.||+......+..||||++|++|+++||||
T Consensus 89 ~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 168 (282)
T TIGR01858 89 RQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVD 168 (282)
T ss_pred HHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcC
Confidence 47999999999999999999999999999999999999999999999999888643322345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+||||||++|++.+ ++|||||||||+|+|||++|+++||+||||+|+++.+|++++++
T Consensus 169 ~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 244 (282)
T TIGR01858 169 SLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAY 244 (282)
T ss_pred EEecccCccccCcCC-CCccCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||+.++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 282 (282)
T TIGR01858 245 FAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSAGRA 282 (282)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 4899999999999999999999999999986
No 4
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=4.9e-73 Score=493.65 Aligned_cols=186 Identities=38% Similarity=0.628 Sum_probs=174.9
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+.... ...|||||||++|+++||||
T Consensus 94 ~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~--~~~yT~peeA~~Fv~~TgvD 171 (285)
T PRK07709 94 KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE--GVIYADPAECKHLVEATGID 171 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc--cccCCCHHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999999999999999988764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|||++||++||+||||+|+++.+|++++++
T Consensus 172 ~LAvaiGt~HG~Y~~-~p~L~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 247 (285)
T PRK07709 172 CLAPALGSVHGPYKG-EPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREV 247 (285)
T ss_pred EEEEeecccccCcCC-CCccCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .||++++..++++|+++++++|++|||.||+
T Consensus 248 ~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ka 285 (285)
T PRK07709 248 LNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA 285 (285)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 5
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=6.8e-73 Score=492.64 Aligned_cols=187 Identities=43% Similarity=0.675 Sum_probs=174.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.|++......+..||||++|++|+++||||
T Consensus 91 ~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD 170 (284)
T PRK12737 91 KKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGID 170 (284)
T ss_pred HHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999999999999999999888643333345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~ 246 (284)
T PRK12737 171 SLAVAIGTAHGLYKG-EPKLDFERLAEIREKV---SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKY 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999988873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
++ .||+.++..++++++++++++|++|||.||
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 283 (284)
T PRK12737 247 FYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSEGK 283 (284)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33 589999999999999999999999999997
No 6
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=7.9e-73 Score=492.43 Aligned_cols=186 Identities=38% Similarity=0.610 Sum_probs=174.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++|+++|++||++|++||||||+|||.||+.... ...|||||||++|+++||||
T Consensus 94 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~--~~~yT~peea~~Fv~~TgvD 171 (286)
T PRK08610 94 KEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD--GIIYADPKECQELVEKTGID 171 (286)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc--ccccCCHHHHHHHHHHHCCC
Confidence 4799999999999999999999999999999999999999999999999888764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++||++||+||||+|+++.+|++++++
T Consensus 172 ~LAvaiGt~HG~Y~~-~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~ 247 (286)
T PRK08610 172 ALAPALGSVHGPYKG-EPKLGFKEMEEIGLST---GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDV 247 (286)
T ss_pred EEEeeccccccccCC-CCCCCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|+++++++|++|||.||+
T Consensus 248 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~~ka 285 (286)
T PRK08610 248 LNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSNRA 285 (286)
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 7
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-73 Score=490.11 Aligned_cols=189 Identities=48% Similarity=0.731 Sum_probs=179.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||+.||++|++||++|++||+|||.+||.||+......+..||+|+||++||++||||
T Consensus 92 ~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD 171 (286)
T COG0191 92 KQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGID 171 (286)
T ss_pred HHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcc
Confidence 47999999999999999999999999999999999999999999999999999865544456899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||+||||+||.|++++|+|||++|++|++.+ ++|||||||||+|+++|+++|++||+||||+||++.||+.++|+
T Consensus 172 ~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~---~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~ 248 (286)
T COG0191 172 ALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV---SLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREY 248 (286)
T ss_pred eeeeeccccccCCCCCCCCCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHH
Confidence 99999999999999767999999999999999 59999999999999999999999999999999999999999983
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ .|||.++.+++++|+++|+++|++|||.|||
T Consensus 249 ~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~gka 286 (286)
T COG0191 249 LAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSAGKA 286 (286)
T ss_pred HHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCccCCC
Confidence 43 5999999999999999999999999999986
No 8
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=1e-72 Score=491.48 Aligned_cols=188 Identities=46% Similarity=0.783 Sum_probs=175.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++||+||||||+|||.|++......+..||+|++|++|+++||||
T Consensus 91 ~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD 170 (284)
T PRK12857 91 MKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVD 170 (284)
T ss_pred HHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCC
Confidence 47999999999999999999999999999999999999999999999998887643222345799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|+|||+||++|++.+ ++|||||||||+|+|+|++|+++||+||||+|+++.+|++++++
T Consensus 171 ~LAvaiGt~HG~y~~-~p~Ld~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~ 246 (284)
T PRK12857 171 ALAIAIGTAHGPYKG-EPKLDFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREV 246 (284)
T ss_pred EEeeccCccccccCC-CCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHH
Confidence 999999999999997 6999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|++.++++|++|||.||+
T Consensus 247 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 284 (284)
T PRK12857 247 LEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSAGKA 284 (284)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 9
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=100.00 E-value=3.6e-72 Score=488.96 Aligned_cols=188 Identities=44% Similarity=0.678 Sum_probs=175.8
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||+|||+|||.|++......+..||+|++|++|+++||||
T Consensus 94 ~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 173 (288)
T TIGR00167 94 AQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVD 173 (288)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCc
Confidence 47999999999999999999999999999999999999999999999999888743223346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCC-CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029526 81 ALAVCIGNVHGKYPSSGPN-LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
+|||||||+||.|++ .|+ |||+||++|++.+ ++|||||||||+|+|+|++||++||+||||+|+++.+|++++++
T Consensus 174 ~LAvaiGt~HG~y~~-~p~~Ld~~~L~~I~~~v---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~ 249 (288)
T TIGR00167 174 SLAAAIGNVHGVYKG-EPKGLDFERLEEIQKYV---NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRN 249 (288)
T ss_pred EEeeccCccccccCC-CCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHH
Confidence 999999999999997 599 9999999999999 69999999999999999999999999999999999999999873
Q ss_pred -----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 -----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..+++++++.++++|++|||.||+
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 288 (288)
T TIGR00167 250 YYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSANKA 288 (288)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 10
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=100.00 E-value=4.5e-72 Score=488.23 Aligned_cols=190 Identities=49% Similarity=0.783 Sum_probs=170.7
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc-ccccCCCHHHHHHHhhhhCC
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~~Fv~~Tgv 79 (192)
++||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+..... .+..||||++|++|+++|||
T Consensus 90 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tgv 169 (287)
T PF01116_consen 90 KRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGV 169 (287)
T ss_dssp HHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTT
T ss_pred HHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999988765433 26799999999999999999
Q ss_pred cEEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 80 DALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
|+|||||||+||.|++ ..|+|||+||++|++.+. ++|||||||||+|+|+|++||++||+||||+|+++.+|+++++
T Consensus 170 D~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~ 247 (287)
T PF01116_consen 170 DALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALR 247 (287)
T ss_dssp SEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHH
T ss_pred CEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHH
Confidence 9999999999999997 249999999999999983 4999999999999999999999999999999999999999997
Q ss_pred C-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 159 R-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 159 ~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+ |+ .+|+.++..++++|+++++++|++|||.|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~gkA 287 (287)
T PF01116_consen 248 EYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSAGKA 287 (287)
T ss_dssp HHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTTTGC
T ss_pred HHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3 44 5999999999999999999999999999997
No 11
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=8.3e-72 Score=489.43 Aligned_cols=187 Identities=37% Similarity=0.670 Sum_probs=174.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+......+..||||++|++|+++||||
T Consensus 91 ~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD 170 (307)
T PRK05835 91 EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVD 170 (307)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999999999999999999999999998887643333346799999999999999999
Q ss_pred EEEEecCcCCCCCC--CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH---------------------HHHHHHh
Q 029526 81 ALAVCIGNVHGKYP--SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE---------------------LIKGCIE 137 (192)
Q Consensus 81 ~LAvaiGt~HG~y~--~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e---------------------~~~~~i~ 137 (192)
+|||||||+||.|+ + .|+|||+||++|++.+ ++|||||||||+|+| +|++|++
T Consensus 171 ~LAvaiGt~HG~Yk~~~-~p~L~f~~L~~I~~~~---~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~ 246 (307)
T PRK05835 171 YLAPAIGTSHGAFKFKG-EPKLDFERLQEVKRLT---NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVK 246 (307)
T ss_pred EEEEccCccccccCCCC-CCccCHHHHHHHHHHh---CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHH
Confidence 99999999999998 5 5999999999999998 699999999999998 9999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029526 138 RGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
+||+||||+|+++.+|++++++ |+ .||++++..++++|++.++++|++|||.||
T Consensus 247 ~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 306 (307)
T PRK05835 247 GGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306 (307)
T ss_pred cCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999984 33 589999999999999999999999999997
No 12
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=1.6e-69 Score=476.87 Aligned_cols=188 Identities=35% Similarity=0.628 Sum_probs=174.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||+.||++|++||++||+||||||+|||.||+.... ...||||++|++|+++||||
T Consensus 102 ~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~--~~~~T~peeA~~Fv~~TgvD 179 (321)
T PRK07084 102 KDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE--HHTYTQPEEVEDFVKKTGVD 179 (321)
T ss_pred HHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCc--ccccCCHHHHHHHHHHhCCC
Confidence 4799999999999999999999999999999999999999999999999988764322 45799999999999999999
Q ss_pred EEEEecCcCCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCC---------------------CCCHHHHHHH
Q 029526 81 ALAVCIGNVHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGC 135 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgS---------------------G~~~e~~~~~ 135 (192)
+|||||||+||.|+.+ .|+||||||++|++.+. ++|||||||| |+|+|||++|
T Consensus 180 ~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~--~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~ka 257 (321)
T PRK07084 180 SLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP--GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKA 257 (321)
T ss_pred EEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC--CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHH
Confidence 9999999999999862 48999999999999983 4999999999 8999999999
Q ss_pred HhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHH-HHhCCCCCC
Q 029526 136 IERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKM-RLFGSSGKA 192 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i-~~~gs~gka 192 (192)
|++||+||||+|+++.||++++++ ++ .||+.++..+++++++.++++| ++|||.||+
T Consensus 258 i~~GI~KINi~Tdl~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~av~~~v~~~i~~~~gs~~ka 321 (321)
T PRK07084 258 AKSAVCKINIDSDGRLAMTAAIRKVFDEKPEEFDPRKYLGPARDELKKLYKHKIINVLGSNGKA 321 (321)
T ss_pred HHcCCceeccchHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 999999999999999999999983 33 5999999999999999999999 899999986
No 13
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=100.00 E-value=3.1e-69 Score=467.97 Aligned_cols=185 Identities=50% Similarity=0.775 Sum_probs=172.9
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||+++++||++|++||+|||+|||.+++.... +..||+|++|++|+++||||
T Consensus 86 ~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~--~~~~T~pe~a~~Fv~~TgvD 163 (276)
T cd00947 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD--EGLLTDPEEAEEFVEETGVD 163 (276)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc--cccCCCHHHHHHHHHHHCCC
Confidence 3799999999999999999999999999999999999999999999999888764322 46899999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|+++.|+|||+||++|++.+ ++|||||||||+|+|+|++++++||+||||+|+++.+|++++++
T Consensus 164 ~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~ 240 (276)
T cd00947 164 ALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREY 240 (276)
T ss_pred EEEeccCccccccCCCCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 99999999999999746999999999999999 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
++ .+|+.++..+++++++.++++|++|||.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s~~ 276 (276)
T cd00947 241 LAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGSAG 276 (276)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22 58999999999999999999999999975
No 14
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=6e-69 Score=467.34 Aligned_cols=184 Identities=36% Similarity=0.613 Sum_probs=172.7
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||++||||||++||++|++||++|++||+|||+|||.||+... . ...||+|++|++|+++||||
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~-~-~~~~T~pe~a~~Fv~~TgvD 168 (283)
T PRK07998 91 KQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVS-E-ADCKTEPEKVKDFVERTGCD 168 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccc-c-ccccCCHHHHHHHHHHhCcC
Confidence 479999999999999999999999999999999999999999999999988876322 1 46799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ |+||||||++|++.+ ++|||||||||+|+|++++|+++||+||||+|+++.+|++++++
T Consensus 169 ~LAvaiGt~HG~Y~~--p~l~~~~l~~I~~~~---~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~ 243 (283)
T PRK07998 169 MLAVSIGNVHGLEDI--PRIDIPLLKRIAEVS---PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKA 243 (283)
T ss_pred eeehhccccccCCCC--CCcCHHHHHHHHhhC---CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHH
Confidence 999999999999984 999999999999998 79999999999999999999999999999999999999999973
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
|+ .||++++..+++++++.++++|++|||.||
T Consensus 244 l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~~ 280 (283)
T PRK07998 244 YVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSNHR 280 (283)
T ss_pred HHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33 589999999999999999999999999987
No 15
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=1.3e-68 Score=474.80 Aligned_cols=190 Identities=29% Similarity=0.345 Sum_probs=170.2
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccc--cccccCCCHHHHHHHhhhhCC-
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLTDVNQAEEFIDETDI- 79 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~--~~~~~~T~peea~~Fv~~Tgv- 79 (192)
|+++||||||||||++||||||++||+||++||++|++||||||+|||.||+.... ..+..||||++|++||++|||
T Consensus 124 a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~ 203 (350)
T PRK09197 124 GGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKI 203 (350)
T ss_pred cCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCC
Confidence 44445999999999999999999999999999999999999999999888764211 123579999999999999998
Q ss_pred ---cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 ---DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 ---D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|+|||||||+||.|+++.|+|||+||++|++.+.+ .++|||||||||+|+|+|++||++||+||||+|+++
T Consensus 204 ~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 204 SGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred CcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHH
Confidence 99999999999999843699999999999999831 159999999999999999999999999999999999
Q ss_pred HHHHHHhcC-----------------------CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 151 KAYMDSLSR-----------------------PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 151 ~a~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
.+|++++++ ++ .||+.++..++++|+++++++|++|||.||.
T Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k~ 349 (350)
T PRK09197 284 WAFWRGVLDYYFKNYDYLQGQVGNPEGEDKPNKKYYDPRVWLRAAEASMAARLEEAFEDLNSIGVL 349 (350)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCCcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999862 21 4889999999999999999999999999984
No 16
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=100.00 E-value=1.3e-68 Score=475.02 Aligned_cols=190 Identities=38% Similarity=0.577 Sum_probs=171.1
Q ss_pred ChhhhcCCCEeEeeCCCC-------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCC-------CCCcccc---cccc
Q 029526 1 MEAIVLGFDSLMVDGSHL-------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTE-------DGLTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l-------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e-------~~~~~~~---~~~~ 63 (192)
++||++||||||||||+| ||||||++||++|++||++||+||||||+|||.| ++..... .+..
T Consensus 90 ~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~ 169 (347)
T TIGR01521 90 QRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQL 169 (347)
T ss_pred HHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhc
Confidence 479999999999999998 9999999999999999999999999999999776 2211111 1356
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCCC-----------
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGLS----------- 128 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~----------- 128 (192)
||+|++|++|+++||||+|||||||+||.|+++ .|+ |||+||++|++.+. ++|||||||||+|
T Consensus 170 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~--~vPLVLHGgSG~p~~~~~~~~~~~ 247 (347)
T TIGR01521 170 LTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP--DTHLVMHGSSSVPQEWLDIINEYG 247 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC--CCCEEEeCCCCCchHhhHHHHhhc
Confidence 999999999999999999999999999999862 254 99999999999883 4999999999988
Q ss_pred ----------HHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 129 ----------AELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 129 ----------~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|||++||++||+||||+|+++.+|++++++ |+ .||++++..++++|+++++++|++|||.|||
T Consensus 248 ~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ka 327 (347)
T TIGR01521 248 GEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAGNA 327 (347)
T ss_pred ccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999999999999973 43 5899999999999999999999999999986
No 17
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=100.00 E-value=2.7e-68 Score=473.57 Aligned_cols=190 Identities=38% Similarity=0.627 Sum_probs=170.9
Q ss_pred ChhhhcCCCEeEeeCCCCC-------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCC-------CCCcccc---cccc
Q 029526 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTE-------DGLTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~-------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e-------~~~~~~~---~~~~ 63 (192)
++||++||||||||||+|| |||||++||++|++||++||+||||||+||+.| |+..... .+..
T Consensus 92 ~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~ 171 (347)
T PRK13399 92 QSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQM 171 (347)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccccccc
Confidence 4799999999999999997 999999999999999999999999999999766 3321111 1357
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCCC-----------
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGLS----------- 128 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~----------- 128 (192)
||||++|++|+++||||+|||||||+||.|+++ .|+ |||+||++|++.+. ++|||||||||+|
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~--~vPLVLHGgSGvp~~~~~~~~~~g 249 (347)
T PRK13399 172 LTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP--NTHLVMHGSSSVPQELQEIINAYG 249 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC--CCCEEEeCCCCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999852 255 99999999999983 4999999999988
Q ss_pred ----------HHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 129 ----------AELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 129 ----------~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+|||++||++||+||||+|+++.+|++++++ ++ .||+.++..++++|+++++++|++|||.||+
T Consensus 250 ~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ka 329 (347)
T PRK13399 250 GKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAGQA 329 (347)
T ss_pred CCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999999999998873 33 5999999999999999999999999999986
No 18
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=4.4e-68 Score=471.92 Aligned_cols=190 Identities=38% Similarity=0.613 Sum_probs=170.8
Q ss_pred ChhhhcCCCEeEeeCCCC-------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCC-------Ccccc---cccc
Q 029526 1 MEAIVLGFDSLMVDGSHL-------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG-------LTVED---YEAK 63 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l-------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~-------~~~~~---~~~~ 63 (192)
++||++||||||||||+| ||||||++||++|++||++||+||||||+|||.|++ ..... .+..
T Consensus 92 ~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~ 171 (347)
T PRK09196 92 QRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQL 171 (347)
T ss_pred HHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhc
Confidence 379999999999999999 999999999999999999999999999999987632 11111 1356
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCC---CCHHHHHHHHhhhccCCccEEeecCCCC------------
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPN---LKLDLLKDLHALSSKKGVLLVLHGASGL------------ 127 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~------------ 127 (192)
||||+||++||++||||+|||||||+||.|+++ .|+ |||+||++|++.++ ++|||||||||+
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~--~vPLVLHGgSG~~~~~~~~~~~~g 249 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP--NTHLVMHGSSSVPQELLDIINEYG 249 (347)
T ss_pred CCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC--CCCEEEeCCCCCCHHHHHHHHHhc
Confidence 999999999999999999999999999999852 254 99999999999983 599999999988
Q ss_pred ---------CHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 128 ---------SAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 128 ---------~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~-----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+|||++||++||+||||+|+++.+|++++++ ++ .||++++..++++++++++++|++|||.||+
T Consensus 250 ~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 329 (347)
T PRK09196 250 GDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAGQA 329 (347)
T ss_pred CCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 88999999999999999999999999998873 33 5899999999999999999999999999985
No 19
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=100.00 E-value=7.1e-68 Score=470.84 Aligned_cols=190 Identities=28% Similarity=0.371 Sum_probs=169.3
Q ss_pred hhhhcC-----------CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccc--cccCCCHH
Q 029526 2 EAIVLG-----------FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY--EAKLTDVN 68 (192)
Q Consensus 2 ~ai~~G-----------FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~--~~~~T~pe 68 (192)
+||++| |||||||||++||||||++||++|++||++||+||||||+|||.||+...+.. +..||||+
T Consensus 119 ~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPe 198 (357)
T TIGR01520 119 GLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPE 198 (357)
T ss_pred HHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHH
Confidence 577775 99999999999999999999999999999999999999999998886432221 35799999
Q ss_pred HHHHHhhhh----CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh-ccCCcc------EEeecCCCCCHHHHHHHHh
Q 029526 69 QAEEFIDET----DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS-SKKGVL------LVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 69 ea~~Fv~~T----gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~-~~~~iP------LVlHGgSG~~~e~~~~~i~ 137 (192)
||++|+++| |||+|||||||+||.|+++.|+||||||++|++++ +..++| ||||||||+|+|||++||+
T Consensus 199 eA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~ 278 (357)
T TIGR01520 199 DVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALS 278 (357)
T ss_pred HHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHH
Confidence 999999988 88999999999999996336999999999996543 122566 9999999999999999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC---------------------CC---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029526 138 RGVRKFNVNTEVRKAYMDSLSR---------------------PK---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~---------------------~~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
+||+||||+|+++.||++++++ |+ .||+.++..++++|+++++++|++|||.||
T Consensus 279 ~GI~KINi~Tdl~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~a~k~~v~~~i~~~gs~~~ 356 (357)
T TIGR01520 279 YGVVKMNIDTDTQWAYWEGILNYYKNNEDYLQGQLGNPKGPDKPNKKFYDPRVWLREGEKSMKARVEKACQELNNINV 356 (357)
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHHHhccccccCccCCcccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999873 22 489999999999999999999999999997
No 20
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=100.00 E-value=9e-68 Score=469.91 Aligned_cols=190 Identities=26% Similarity=0.331 Sum_probs=170.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCHHHHHHHhhhh--
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDVNQAEEFIDET-- 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~peea~~Fv~~T-- 77 (192)
+|+++||||||||||++||||||++||++|++||++||+||+|||+|||.||+..... .+..||||+||++|+++|
T Consensus 118 ~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~ 197 (345)
T cd00946 118 QHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSK 197 (345)
T ss_pred HhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhcc
Confidence 4679999999999999999999999999999999999999999999999888743221 235799999999999998
Q ss_pred --CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHh----hhc---cCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 78 --DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA----LSS---KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 78 --gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~----~~~---~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|||+|||||||+||.|+++.|+|||+||++|++ .+. ..++|||||||||+|+|+|++||++||+||||+|+
T Consensus 198 ~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~ 277 (345)
T cd00946 198 ISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTD 277 (345)
T ss_pred CCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcH
Confidence 889999999999999994359999999999954 331 02699999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---------------------CC---CChHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 029526 149 VRKAYMDSLSR---------------------PK---SDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191 (192)
Q Consensus 149 l~~a~~~~~~~---------------------~~---~~~~~~~~~~~~~~~~~v~~~i~~~gs~gk 191 (192)
++++|++++++ ++ .||+.++..++++|++.++++|++|||.+|
T Consensus 278 l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~k 344 (345)
T cd00946 278 TQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREGEKSMVARVKKAFEDLNSVNK 344 (345)
T ss_pred HHHHHHHHHHHHHhhcchhhccccCCCcccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999873 22 489999999999999999999999999987
No 21
>PRK08185 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-65 Score=443.31 Aligned_cols=189 Identities=41% Similarity=0.635 Sum_probs=174.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++|+++||||||||+|+|||||||++|++++++||++|++||+|||+||+.+++......+..||+|+||++|+++||||
T Consensus 85 ~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD 164 (283)
T PRK08185 85 MRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVD 164 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCC
Confidence 37999999999999999999999999999999999999999999999998776532222235799999999999999999
Q ss_pred EEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029526 81 ALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
+|||||||+||.|+.+ +|+|||++|++|++.+ ++|||||||||+|+|||++|+++||+||||+|+++.+|++++++
T Consensus 165 ~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~ 241 (283)
T PRK08185 165 TLAVAIGTAHGIYPKDKKPELQMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVRE 241 (283)
T ss_pred EEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHH
Confidence 9999999999999863 5999999999999998 69999999999999999999999999999999999999999873
Q ss_pred -----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 -----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .|+++++..++++|++.++++|++|||.||+
T Consensus 242 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~~ka 280 (283)
T PRK08185 242 ILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNSTGKA 280 (283)
T ss_pred HHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 33 5899999999999999999999999999986
No 22
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=100.00 E-value=6.4e-65 Score=448.86 Aligned_cols=190 Identities=27% Similarity=0.333 Sum_probs=173.5
Q ss_pred ChhhhcC-----------CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCH
Q 029526 1 MEAIVLG-----------FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDV 67 (192)
Q Consensus 1 ~~ai~~G-----------FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~p 67 (192)
++||++| |||||||||++||||||++|+++|++||++|++||+|||+|||.||+..... .+..||+|
T Consensus 104 ~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~P 183 (340)
T cd00453 104 DGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQP 183 (340)
T ss_pred HHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCH
Confidence 3799999 9999999999999999999999999999999999999999999988754321 24679999
Q ss_pred HHHHHHhhhhC----CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHHHHHHh
Q 029526 68 NQAEEFIDETD----IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 68 eea~~Fv~~Tg----vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
|||++|+++|| ||+|||||||+||.|+++.|+|||+||++|++.++. .++|||||||||+|+|+|+++++
T Consensus 184 eea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~ 263 (340)
T cd00453 184 EDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVS 263 (340)
T ss_pred HHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 99999999999 999999999999999963599999999999999832 15999999999999999999999
Q ss_pred cCCeEeecchHHHHHHHHHhcC-----C------------------C-CChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 138 RGVRKFNVNTEVRKAYMDSLSR-----P------------------K-SDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 138 ~Gi~KINi~T~l~~a~~~~~~~-----~------------------~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
+||+||||+|+++.||++++++ + + .||+.++..++++|+++++++|++|||.+
T Consensus 264 ~Gi~KiNi~Te~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~v~~~i~~~~~~~ 340 (340)
T cd00453 264 YGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAID 340 (340)
T ss_pred cCCeEEEcccHHHHHHHHHHHHHHHhChhhhhhhccCcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999862 3 2 48999999999999999999999999864
No 23
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.4e-63 Score=503.74 Aligned_cols=192 Identities=81% Similarity=1.190 Sum_probs=179.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||||+|||||||++||++|++||++|++||||||+|||.||+......+..||||++|++|+++||||
T Consensus 1186 ~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD 1265 (1378)
T PLN02858 1186 LEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGID 1265 (1378)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCc
Confidence 47999999999999999999999999999999999999999999999999888744333346799999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCC
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP 160 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~ 160 (192)
+|||||||+||.|++++|+||||||++|++.++..++|||||||||+|+|+|++||++||+||||+|+++.+|+++++++
T Consensus 1266 ~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~ 1345 (1378)
T PLN02858 1266 ALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALSSP 1345 (1378)
T ss_pred EEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHHHhCc
Confidence 99999999999999635999999999999998544699999999999999999999999999999999999999999987
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 161 K-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
+ .|++.++..++++|++.++++|++|||.||+
T Consensus 1346 ~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~~ka 1378 (1378)
T PLN02858 1346 KKTDLIDVMSAAKEAMKAVVAEKLRLFGSAGKA 1378 (1378)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6 5899999999999999999999999999996
No 24
>PRK06801 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-61 Score=419.10 Aligned_cols=188 Identities=40% Similarity=0.672 Sum_probs=173.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc-ccccCCCHHHHHHHhhhhCC
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED-YEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~-~~~~~T~peea~~Fv~~Tgv 79 (192)
++||++||||||||+|++||+|||++|++++++||++|++||+|||+||+.+++..... ..+.||+|++|++|+++|||
T Consensus 91 ~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgv 170 (286)
T PRK06801 91 VRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGI 170 (286)
T ss_pred HHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCc
Confidence 37999999999999999999999999999999999999999999999998876532111 23579999999999999999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~ 159 (192)
|+|||||||+||.|++ .|+|||++|++|++.+ ++|||||||||+|++++++++++||+||||+|+++.+|++++++
T Consensus 171 D~LAvaiGt~Hg~y~~-~~~l~~e~l~~i~~~~---~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~ 246 (286)
T PRK06801 171 DALAVAIGNAHGKYKG-EPKLDFARLAAIHQQT---GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQ 246 (286)
T ss_pred CEEEeccCCCCCCCCC-CCCCCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHHHHH
Confidence 9999999999999997 5999999999999988 69999999999999999999999999999999999999999973
Q ss_pred -----CC-C-ChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 -----PK-S-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -----~~-~-~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|+ . +++.++..+++++++.++++|++|||.||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 286 (286)
T PRK06801 247 RMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSAGQA 286 (286)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 3 578999999999999999999999999986
No 25
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=3.2e-58 Score=402.15 Aligned_cols=186 Identities=41% Similarity=0.669 Sum_probs=170.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||||||||+|++||+|||+.|++++++||++|++||+|||+|+|.++.... .+.||||+||++|+ +||||
T Consensus 93 ~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g---~s~~t~peea~~f~-~tgvD 168 (293)
T PRK07315 93 LECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIG---KGELAPIEDAKAMV-ETGID 168 (293)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccC---ccCCCCHHHHHHHH-HcCCC
Confidence 379999999999999999999999999999999999999999999999886765322 12489999999999 89999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||++|||+||.|+...|.|+|++|++|++.+. ++|||+|||||+|+|++++++++||+||||+|+++.++.+++++
T Consensus 169 ~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~ 246 (293)
T PRK07315 169 FLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKF 246 (293)
T ss_pred EEeeccccccccCCCCCCcCCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHH
Confidence 999999999999986347899999999999983 49999999999999999999999999999999999999888762
Q ss_pred -------------CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 -------------PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 -------------~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||+.++..++++|++.++++|++|||.||+
T Consensus 247 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ka 293 (293)
T PRK07315 247 ARDYEANEAEYDKKKLFDPRKFLAPGVKAIQASVEERIDVFGSANKA 293 (293)
T ss_pred HHhcccccccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 11 4899999999999999999999999999986
No 26
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=100.00 E-value=1.2e-56 Score=390.30 Aligned_cols=186 Identities=48% Similarity=0.790 Sum_probs=173.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||+|||||+|++|++||+++|++++++||++|++||+|||.+||.+|.... ....||+||||++|+++||+|
T Consensus 91 ~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g--~~~~~t~~eea~~f~~~tgvD 168 (282)
T TIGR01859 91 IKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDE--KEAELADPDEAEQFVKETGVD 168 (282)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccc--cccccCCHHHHHHHHHHHCcC
Confidence 379999999999999999999999999999999999999999999999987775332 124699999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+|||||||+||.|++ .|.|+|++|++|++.+ ++|||+|||||+|++++++++++||+||||+|+++.+|.+++++
T Consensus 169 ~Lavs~Gt~hg~~~~-~~~l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 169 YLAAAIGTSHGKYKG-EPGLDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKV 244 (282)
T ss_pred EEeeccCccccccCC-CCccCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHH
Confidence 999999999999997 5999999999999998 69999999999999999999999999999999999999999873
Q ss_pred ----CC-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PK-SDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~-~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
++ .||++++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~~~a 282 (282)
T TIGR01859 245 LTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSAGKA 282 (282)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33 5899999999999999999999999999986
No 27
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=1.4e-54 Score=377.38 Aligned_cols=186 Identities=45% Similarity=0.716 Sum_probs=172.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++||++||+|||||+|++|++||++.|++++++||++|++||+|+||||+.+++.. .....+|+|+||++|+++||+|
T Consensus 91 ~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~--~~g~s~t~~eea~~f~~~tg~D 168 (281)
T PRK06806 91 KEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE--DIEMLLTSTTEAKRFAEETDVD 168 (281)
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcc--cccceeCCHHHHHHHHHhhCCC
Confidence 37999999999999999999999999999999999999999999999997776532 1234689999999999999999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcC-
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR- 159 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~- 159 (192)
+||+||||+||.|+. .|.|+|++|++|++.+ ++|||+|||||+|++++++++++|++|||+.|+++.++.+++++
T Consensus 169 yLAvaiG~~hg~~~~-~~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~ 244 (281)
T PRK06806 169 ALAVAIGNAHGMYNG-DPNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNL 244 (281)
T ss_pred EEEEccCCCCCCCCC-CCccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHH
Confidence 999999999999985 5999999999999998 69999999999999999999999999999999999999998873
Q ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 029526 160 ----PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192 (192)
Q Consensus 160 ----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~gka 192 (192)
|..++++++..++++|++.++++|++|||.||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~~k~ 281 (281)
T PRK06806 245 VLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSENKA 281 (281)
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 446899999999999999999999999999986
No 28
>KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-44 Score=305.65 Aligned_cols=188 Identities=41% Similarity=0.543 Sum_probs=164.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcccc--ccccCCCHH----HHHHHhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVED--YEAKLTDVN----QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~--~~~~~T~pe----ea~~Fv~ 75 (192)
++.+.+|+|+|+|+|++||+|||..|++..+.|++.+++||+|||..||.||++.+++ ....||.|+ ++++|.+
T Consensus 131 ehgEplfsShMlDlSees~~ENis~~k~y~kra~sm~iwvEmEiGitgGeEDGv~n~~~~~~elYt~pe~~~nvyqel~~ 210 (358)
T KOG4153|consen 131 EHGEPLFSSHMLDLSEESFTENISYTKSYTKRARSMNIWVEMEIGITGGEEDGVTNENADKVELYTAPETNVNVYQELME 210 (358)
T ss_pred HhcccchhhhccccccccccccHHHHHHHHHHhhhhhheeheecccccCcccCccccccchhhhhccchhHHHHHHHHhc
Confidence 4678899999999999999999999999999999999999999999999999987432 234677775 4667775
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh-------ccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS-------SKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~-------~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
-+.+|+||++|||+||.|+++.|+|++|+|++.++.+ +++++-||+|||||++..+|+.+|++||.|+|++|+
T Consensus 211 ~~p~fsiAaafGNvHG~Yp~g~~~LkpdlL~ehqays~eq~~~~~~KpvFlVfHGgSGssvnefktgIenGVvKvNvdTd 290 (358)
T KOG4153|consen 211 TGPIFSIAAAFGNVHGKYPKGGPNLKPDLLKEHQAYSREQVGCKSKKPVFLVFHGGSGSSVNEFKTGIENGVVKVNVDTD 290 (358)
T ss_pred cCchHHHHHHhcccccccCCCCcccCHHHHHHHHHHHHHhhcccccCceEEEEeCCCCccHHHHHHHHhcCeEEEeecch
Confidence 5569999999999999998768999999999999987 456899999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---------------------CCC---ChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 149 VRKAYMDSLSR---------------------PKS---DLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 149 l~~a~~~~~~~---------------------~~~---~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.|.||+.++++ |++ ||+.+..+..+.|-+.+...++.|...
T Consensus 291 ~q~AYmeglrdyvl~~kdyvMspvgnpega~kpnKkrfdprvw~~egektm~~~~~~~le~f~t~ 355 (358)
T KOG4153|consen 291 VQTAYMEGLRDYVLTDKDYVMSPVGNPEGAVKPNKKRFDPRVWKAEGEKTMGAKITKSLETFRTT 355 (358)
T ss_pred hHHHHHHHHhhhhccchheeecccCCcccccCCcceecCchhhhhccchhHHHHHHHHHHhhhcc
Confidence 99999999872 222 788888888899988888888877643
No 29
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.74 E-value=0.00085 Score=56.33 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=89.9
Q ss_pred hhhhcCCCEe--EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC--CHHHHHHHhhhh
Q 029526 2 EAIVLGFDSL--MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT--DVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSV--M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T--~peea~~Fv~~T 77 (192)
+|+++|.+.| ++.-..++.++.++..+++++.||.+|+.+=.|.-.- |..- ...++ ..+.+.+-..+.
T Consensus 84 ~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~-g~~~-------~~~~~~~~i~~~~~~a~~~ 155 (235)
T cd00958 84 DAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPR-GPAV-------KNEKDPDLIAYAARIGAEL 155 (235)
T ss_pred HHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEecc-CCcc-------cCccCHHHHHHHHHHHHHH
Confidence 6889999977 6665667788999999999999999998876665221 1110 00112 223323335578
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CH----HHHHHHHhcCCeEeecchHHH
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SA----ELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~----e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.|++.+. |+. +++.++++.+.+ ++|+|+=||-+. +. ++++.++++|+.=|-+++.+.
T Consensus 156 GaD~Ik~~-------~~~-----~~~~~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 156 GADIVKTK-------YTG-----DAESFKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred CCCEEEec-------CCC-----CHHHHHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 99999984 221 678888888776 699999898654 44 458999999999999998885
No 30
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.71 E-value=0.0017 Score=57.79 Aligned_cols=134 Identities=15% Similarity=0.222 Sum_probs=91.9
Q ss_pred ChhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ -+++.+.+...++++-.++. +..|-.-+... +...
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~----~~~~- 235 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISAT----DWVE- 235 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccc----ccCC-
Confidence 36889999999998743 15889999999999988863 34444444321 1110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCC--CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH
Q 029526 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKY--PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI 132 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y--~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~ 132 (192)
.-.+++++.+|+ ++.|+|+|.|+.|..+... +. .+..+.+.+++|++.+ ++|++. +|.=.+.+++
T Consensus 236 -----~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~-~~~~~~~~~~~ir~~~---~iPVi~-~G~i~t~~~a 305 (336)
T cd02932 236 -----GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPV-GPGYQVPFAERIRQEA---GIPVIA-VGLITDPEQA 305 (336)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCC-CccccHHHHHHHHhhC---CCCEEE-eCCCCCHHHH
Confidence 113478888875 4569999999988655432 21 2455678889999888 699764 4444467789
Q ss_pred HHHHhcC-CeEeecchHH
Q 029526 133 KGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 133 ~~~i~~G-i~KINi~T~l 149 (192)
.++++.| +.=|-+++.+
T Consensus 306 ~~~l~~g~aD~V~~gR~~ 323 (336)
T cd02932 306 EAILESGRADLVALGREL 323 (336)
T ss_pred HHHHHcCCCCeehhhHHH
Confidence 9999988 6666666554
No 31
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.64 E-value=0.0036 Score=54.93 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=99.6
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|. ...+|+++..++++++|+..|..|++.+...-+.+++ ..++|+...
T Consensus 87 ~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~--------~~~~~~~~~ 158 (287)
T PRK05692 87 AALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYE--------GEVPPEAVA 158 (287)
T ss_pred HHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCC--------CCCCHHHHH
Confidence 6888998887655443 3568889999999999999999999988875444432 247888888
Q ss_pred HHhh---hhCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEe-
Q 029526 72 EFID---ETDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKF- 143 (192)
Q Consensus 72 ~Fv~---~TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KI- 143 (192)
++++ +.|+|.+.++ +|.. .|.-=.++++.|++..+ ++||.+| -..|+.-...-.|++.|+.-|
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~-------~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id 229 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVG-------TPGQVRAVLEAVLAEFP--AERLAGHFHDTYGQALANIYASLEEGITVFD 229 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCcc-------CHHHHHHHHHHHHHhCC--CCeEEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 8876 5799987664 2222 24434566677777663 3666655 567888899999999999877
Q ss_pred -----------------ecchHHHHHHHHHh
Q 029526 144 -----------------NVNTEVRKAYMDSL 157 (192)
Q Consensus 144 -----------------Ni~T~l~~a~~~~~ 157 (192)
|..|+-..++.+..
T Consensus 230 ~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~ 260 (287)
T PRK05692 230 ASVGGLGGCPYAPGASGNVATEDVLYMLHGL 260 (287)
T ss_pred EEccccCCCCCCCCccccccHHHHHHHHHhc
Confidence 56666666666543
No 32
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.64 E-value=0.016 Score=47.28 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=97.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCccc---------cc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTVE---------DY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~~---------~~ 60 (192)
++++.|.+.|-+|-..++..++++..+++.+.|+.+|+.+=. ++|. ++ .++..... ..
T Consensus 29 ~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad~vh~~-~~~~~~~~~~~~~~~~~~~ 107 (212)
T PRK00043 29 AALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGADGVHLG-QDDLPVADARALLGPDAII 107 (212)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecC-cccCCHHHHHHHcCCCCEE
Confidence 578899999999999999999999999999999998875543 2332 11 11110000 00
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEec---CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCI---GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvai---Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
.....+++++.+-. +.|+|.+.++- ++.|..+ .+.+.++.++++++..+ ++|++.-| |+..++++++.+
T Consensus 108 g~~~~t~~e~~~a~-~~gaD~v~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~--~~~v~a~G--GI~~~~i~~~~~ 179 (212)
T PRK00043 108 GLSTHTLEEAAAAL-AAGADYVGVGPIFPTPTKKDA---KAPQGLEGLREIRAAVG--DIPIVAIG--GITPENAPEVLE 179 (212)
T ss_pred EEeCCCHHHHHHHh-HcCCCEEEECCccCCCCCCCC---CCCCCHHHHHHHHHhcC--CCCEEEEC--CcCHHHHHHHHH
Confidence 11224677877744 67999997540 1112111 23456899999988773 39999999 557899999999
Q ss_pred cCCeEeecchHHH
Q 029526 138 RGVRKFNVNTEVR 150 (192)
Q Consensus 138 ~Gi~KINi~T~l~ 150 (192)
+|..=|=+++.+.
T Consensus 180 ~Ga~gv~~gs~i~ 192 (212)
T PRK00043 180 AGADGVAVVSAIT 192 (212)
T ss_pred cCCCEEEEeHHhh
Confidence 9999999998874
No 33
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.52 E-value=0.0024 Score=53.22 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=84.8
Q ss_pred hhhhcCCCEeEeeCCCCC--HHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLP--FKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~--~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
+|+++|-+-|-+|.+.++ ..+ ...++++.+|+ .++.+=.+ .++++++++ +.+.|
T Consensus 83 ~a~~aGad~I~~d~~~~~~p~~~---~~~~~i~~~~~~~~i~vi~~-------------------v~t~ee~~~-a~~~G 139 (221)
T PRK01130 83 ALAAAGADIIALDATLRPRPDGE---TLAELVKRIKEYPGQLLMAD-------------------CSTLEEGLA-AQKLG 139 (221)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCC---CHHHHHHHHHhCCCCeEEEe-------------------CCCHHHHHH-HHHcC
Confidence 578899998889988764 212 23577888887 66664432 256778865 66789
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+|++.+..+...+.-.. ....+++++++|++.+ ++|++. ++|+ ..+++.++.+.|..=|-++|.+.
T Consensus 140 ~d~i~~~~~g~t~~~~~-~~~~~~~~i~~i~~~~---~iPvia--~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 140 FDFIGTTLSGYTEETKK-PEEPDFALLKELLKAV---GCPVIA--EGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CCEEEcCCceeecCCCC-CCCcCHHHHHHHHHhC---CCCEEE--ECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 99987643322222111 2345789999999887 699886 4577 47889999999999999998874
No 34
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.41 E-value=0.0063 Score=53.36 Aligned_cols=136 Identities=16% Similarity=0.178 Sum_probs=92.0
Q ss_pred ChhhhcCCCEeEeeCCC--------C------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH--------L------------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------l------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+.|-|-+.+ . ++|...+...++++-.++. ++.|-.-+..-...+
T Consensus 148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~----- 222 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP----- 222 (327)
T ss_pred HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC-----
Confidence 36889999999998863 1 4677888888888888763 333333322110000
Q ss_pred ccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH
Q 029526 58 EDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA 129 (192)
Q Consensus 58 ~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~ 129 (192)
.--+++++.++ +++.|+|+|-++-|+....+.. ..+..+++.++.|++.+ ++|++.-|+-.. .
T Consensus 223 -----~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t-~ 293 (327)
T cd02803 223 -----GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRD-P 293 (327)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCC-H
Confidence 01346666555 4567999999998875433321 01356788889999988 699999887653 5
Q ss_pred HHHHHHHhc-CCeEeecchHHH
Q 029526 130 ELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 130 e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
+++.++++. |+.-|-+++.+.
T Consensus 294 ~~a~~~l~~g~aD~V~igR~~l 315 (327)
T cd02803 294 EVAEEILAEGKADLVALGRALL 315 (327)
T ss_pred HHHHHHHHCCCCCeeeecHHHH
Confidence 669999998 688888888764
No 35
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.33 E-value=0.027 Score=44.73 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=95.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcc--------cccc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTV--------EDYE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~--------~~~~ 61 (192)
++++.|.+.|=+|-...++.+|++..+++.+.++.+|+.+=. +.|. ++........ ....
T Consensus 20 ~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh~~~~~~~~~~~~~~~~~~~~~g 99 (196)
T cd00564 20 AALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVHLGQDDLPVAEARALLGPDLIIG 99 (196)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEecCcccCCHHHHHHHcCCCCEEE
Confidence 467889999999999999999999999999999887755433 2221 2111100000 0000
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcC-CCCCCCCC-CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 62 AKLTDVNQAEEFIDETDIDALAVCIGNV-HGKYPSSG-PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~~~-p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
....+++++.+.. +.|+|.+.++ ++ .+.-+.+. +...+++++++++.. ++|++.=| |+..++++++.+.|
T Consensus 100 ~~~~t~~~~~~~~-~~g~d~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pv~a~G--Gi~~~~i~~~~~~G 171 (196)
T cd00564 100 VSTHSLEEALRAE-ELGADYVGFG--PVFPTPTKPGAGPPLGLELLREIAELV---EIPVVAIG--GITPENAAEVLAAG 171 (196)
T ss_pred eeCCCHHHHHHHh-hcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 1124688888855 5689998764 22 11111111 456789999998775 69998888 55679999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-++|.+.
T Consensus 172 a~~i~~g~~i~ 182 (196)
T cd00564 172 ADGVAVISAIT 182 (196)
T ss_pred CCEEEEehHhh
Confidence 99999999885
No 36
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.28 E-value=0.011 Score=54.41 Aligned_cols=120 Identities=22% Similarity=0.204 Sum_probs=80.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|-+.|.+-+.. .+++ ..++++.|+++|+.+-. |.+. ..|+.+.+++.. +.|+|.
T Consensus 76 ~a~~aGAdgV~v~g~~--~~~~---~~~~i~~a~~~G~~~~~--g~~s-------------~~t~~e~~~~a~-~~GaD~ 134 (430)
T PRK07028 76 MAAKAGADIVCILGLA--DDST---IEDAVRAARKYGVRLMA--DLIN-------------VPDPVKRAVELE-ELGVDY 134 (430)
T ss_pred HHHHcCCCEEEEecCC--ChHH---HHHHHHHHHHcCCEEEE--EecC-------------CCCHHHHHHHHH-hcCCCE
Confidence 5788888888864432 1222 35788888888876543 2121 113345555544 569999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+.+..|. .....+...++.|+++++.. ++|++.|| |+..+++..+++.|+.-+=++|.+..
T Consensus 135 I~~~pg~----~~~~~~~~~~~~l~~l~~~~---~iPI~a~G--GI~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 135 INVHVGI----DQQMLGKDPLELLKEVSEEV---SIPIAVAG--GLDAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred EEEEecc----chhhcCCChHHHHHHHHhhC---CCcEEEEC--CCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 9665332 22112334578888888776 69999999 77889999999999999999998863
No 37
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.25 E-value=0.011 Score=52.92 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=89.5
Q ss_pred ChhhhcCCCEeEeeC----------CCC----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDG----------SHL----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~----------S~l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+=+ |.. ++|...+...++++-.++. | ++|--=|+.- + ...
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~---~-~~~- 222 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD---E-DTE- 222 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh---h-ccC-
Confidence 368899999999888 322 5788889999999998874 3 3444333321 1 110
Q ss_pred ccccccCCCHHHHHHHh---hhhC-CcEEEEecCcCCCC------CCC--CCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 58 EDYEAKLTDVNQAEEFI---DETD-IDALAVCIGNVHGK------YPS--SGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~Tg-vD~LAvaiGt~HG~------y~~--~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
.-.+++++.+|+ ++.| +|+|-|+-|+.... ++. ..+..+++.++.|++.+ ++|+..-|+-
T Consensus 223 -----~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~ipvi~~G~i 294 (343)
T cd04734 223 -----GGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV---DLPVFHAGRI 294 (343)
T ss_pred -----CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc---CCCEEeeCCC
Confidence 013567777765 4567 89999998876432 110 01345678888999888 6999999866
Q ss_pred CCCHHHHHHHHhcC-CeEeecchHH
Q 029526 126 GLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 126 G~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
- ..++..++++.| +.=|=++..+
T Consensus 295 ~-~~~~~~~~l~~~~~D~V~~gR~~ 318 (343)
T cd04734 295 R-DPAEAEQALAAGHADMVGMTRAH 318 (343)
T ss_pred C-CHHHHHHHHHcCCCCeeeecHHh
Confidence 4 456699999876 5555555443
No 38
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.23 E-value=0.0099 Score=49.51 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC-----eEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM-----LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv-----~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+++++|.+.||+..+.+. |....++ +++.+|- ++-.-.|.+-.. .. ....-.+|.+..+.+++
T Consensus 90 ~~~~~Gad~vvigs~~l~---dp~~~~~---i~~~~g~~~i~~sid~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~ 157 (234)
T cd04732 90 RLLDLGVSRVIIGTAAVK---NPELVKE---LLKEYGGERIVVGLDAKDGKVATK-GW-----LETSEVSLEELAKRFEE 157 (234)
T ss_pred HHHHcCCCEEEECchHHh---ChHHHHH---HHHHcCCceEEEEEEeeCCEEEEC-CC-----eeecCCCHHHHHHHHHH
Confidence 567899999999887764 3333333 3444543 555444544211 00 01123477788888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|+|.+-+.==+.-|.+ ...|++.+++|.+.+ ++|++.-||-..++ +++++.+.|+..+-++|.+.
T Consensus 158 ~ga~~iii~~~~~~g~~----~g~~~~~i~~i~~~~---~ipvi~~GGi~~~~-di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 158 LGVKAIIYTDISRDGTL----SGPNFELYKELAAAT---GIPVIASGGVSSLD-DIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCEEEEEeecCCCcc----CCCCHHHHHHHHHhc---CCCEEEecCCCCHH-HHHHHHHCCCCEEEEeHHHH
Confidence 99998866411122333 225899999999887 69999999888764 49999999999999999884
No 39
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.15 E-value=0.0089 Score=54.08 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=91.8
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=-|. .+.+|.++..++++++|+..|..|++-+...-|.++. ..++|+...
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~--------~r~~~~~l~ 200 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIE--------GPVPPSKVA 200 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCcc--------CCCCHHHHH
Confidence 6889999887766443 4689999999999999999999998888765444432 247888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+.++ -.=|.- .|.-=.++++.|++..+ .+||-+| -..|+.-...-.|+..|+.-|+.
T Consensus 201 ~~~~~~~~~Gad~I~l~--DT~G~a---~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~ 272 (347)
T PLN02746 201 YVAKELYDMGCYEISLG--DTIGVG---TPGTVVPMLEAVMAVVP--VDKLAVHFHDTYGQALANILVSLQMGISTVDS 272 (347)
T ss_pred HHHHHHHHcCCCEEEec--CCcCCc---CHHHHHHHHHHHHHhCC--CCeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 7765 4799986654 222221 24444566677776653 2355555 56788889999999999987654
No 40
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.12 E-value=0.0089 Score=49.80 Aligned_cols=122 Identities=17% Similarity=0.262 Sum_probs=83.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|+++|-+-|-+|.+.++..+. ....++++.+++.+ +.+=.+ .++|+++.+. .+.|+|
T Consensus 87 ~a~~aGad~I~~~~~~~~~p~~-~~~~~~i~~~~~~g~~~iiv~-------------------v~t~~ea~~a-~~~G~d 145 (219)
T cd04729 87 ALAAAGADIIALDATDRPRPDG-ETLAELIKRIHEEYNCLLMAD-------------------ISTLEEALNA-AKLGFD 145 (219)
T ss_pred HHHHcCCCEEEEeCCCCCCCCC-cCHHHHHHHHHHHhCCeEEEE-------------------CCCHHHHHHH-HHcCCC
Confidence 5778898988889887642210 13346777777666 443321 3577888664 467999
Q ss_pred EEEEecCcCCCCCCC--CCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHH
Q 029526 81 ALAVCIGNVHGKYPS--SGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~--~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
++.+. .||.... .....+++.+++|++.+ ++|++. ++|+ +.++++++++.|..=+=++|.+..+
T Consensus 146 ~i~~~---~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia--~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 146 IIGTT---LSGYTEETAKTEDPDFELLKELRKAL---GIPVIA--EGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred EEEcc---CccccccccCCCCCCHHHHHHHHHhc---CCCEEE--eCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 98653 2332221 01335789999999887 699986 4477 5688999999999999999988644
No 41
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=97.12 E-value=0.041 Score=50.88 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=105.0
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhC----CCeEEEeccccccCCCCC----ccccccccCC
Q 029526 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSK----GMLVEAELGRLSGTEDGL----TVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~----gv~VEaElG~i~g~e~~~----~~~~~~~~~T 65 (192)
..+++||+-+++|.|.- |.+.=.+++.++.++|-.. |.. ++..+=|.|... .....+-.-|
T Consensus 112 ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~vT 188 (421)
T PRK15052 112 AYVRAGFSKIHLDASMSCADDPIPLAPETVAERAAVLCQAAESVATDCQRE---QLSYVIGTEVPVPGGEASAIQSVHVT 188 (421)
T ss_pred HHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CceEEeccccCCCCcchhhccccCCC
Confidence 35789999999999987 5566677778777755542 321 333333333211 1111233579
Q ss_pred CHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC--CCCH
Q 029526 66 DVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS--GLSA 129 (192)
Q Consensus 66 ~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS--G~~~ 129 (192)
+|+.++.|++.. | |=.|-|--|+--+ .. +.-..|++..+++.+.++. -+||+-+=| =.++
T Consensus 189 ~~e~~~~ti~~h~~af~~~GL~~aw~rvi~vVVQpGvef~-~~-~V~~y~~~~A~~Ls~~~~~--~~lvfEaHSTDYQt~ 264 (421)
T PRK15052 189 RVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFD-HS-NIIHYQPQEAQALSAWIEN--TPMVYEAHSTDYQTR 264 (421)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeeC-CC-CeeecCHHHHHHHHHHhcC--CCEEEeecCcccCCH
Confidence 999999999764 3 4457777777554 22 2466888899999999873 567775555 4788
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 130 ELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
..++..++.|+.-.||+=.|--++++++-
T Consensus 265 ~al~~lv~dgfaiLKVGPalTfalreAlf 293 (421)
T PRK15052 265 QAYRELVRDHFAILKVGPALTFALREAIF 293 (421)
T ss_pred HHHHHHHhcCceeeeechhHhHHHHHHHH
Confidence 99999999999999999988888877763
No 42
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.11 E-value=0.011 Score=49.32 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=84.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+++++|++.|.+-.+.+. |... +.++++.+| +++-.--|.+.- . +- . +..-.+|.+..+.+++
T Consensus 89 ~~~~~Ga~~vvlgs~~l~---d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~-~-g~---~-~~~~~~~~~~~~~~~~ 156 (230)
T TIGR00007 89 KLLDLGVDRVIIGTAAVE---NPDL---VKELLKEYGPERIVVSLDARGGEVAV-K-GW---L-EKSEVSLEELAKRLEE 156 (230)
T ss_pred HHHHcCCCEEEEChHHhh---CHHH---HHHHHHHhCCCcEEEEEEEECCEEEE-c-CC---c-ccCCCCHHHHHHHHHh
Confidence 578899999998555543 3433 445555554 223333333311 0 00 0 1112577888888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|+|.+-+--=+.=|.+. ..|++++++|.+.+ ++|++.-||-..+++ ++++.+.|+..+-++|.+.
T Consensus 157 ~g~~~ii~~~~~~~g~~~----g~~~~~i~~i~~~~---~ipvia~GGi~~~~d-i~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 157 LGLEGIIYTDISRDGTLS----GPNFELTKELVKAV---NVPVIASGGVSSIDD-LIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCCEEEEEeecCCCCcC----CCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHCCCCEEEEeHHHH
Confidence 999976653222224443 24899999999887 699999999887655 7888899999999999875
No 43
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.11 E-value=0.026 Score=46.84 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=85.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+++|.+.|.++.+.+|. ...+++++.++.+|+.+-.+ .++++++++.. +.|+|.
T Consensus 89 ~~~~~Gad~v~l~~~~~~~----~~~~~~~~~~~~~g~~~~v~-------------------v~~~~e~~~~~-~~g~~~ 144 (217)
T cd00331 89 EARAAGADAVLLIVAALDD----EQLKELYELARELGMEVLVE-------------------VHDEEELERAL-ALGAKI 144 (217)
T ss_pred HHHHcCCCEEEEeeccCCH----HHHHHHHHHHHHcCCeEEEE-------------------ECCHHHHHHHH-HcCCCE
Confidence 5789999999999999997 35577788888888877333 24556777754 568999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+. +.... ....++++++++++.+. .++|++-=||-. +.++++++.++|+.=+=++|.+.
T Consensus 145 i~~t-----~~~~~-~~~~~~~~~~~l~~~~~-~~~pvia~gGI~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 145 IGIN-----NRDLK-TFEVDLNTTERLAPLIP-KDVILVSESGIS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred EEEe-----CCCcc-ccCcCHHHHHHHHHhCC-CCCEEEEEcCCC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 9765 33322 24567899999987741 157887666433 44789999999999999999874
No 44
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.06 E-value=0.024 Score=50.45 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=90.1
Q ss_pred ChhhhcCCCEeEeeCCC-------C-------------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH-------L-------------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~-------l-------------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ | ++|...+...++++-.++. | +.|-.-+... +..
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~----~~~-- 229 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA----DFQ-- 229 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH----HcC--
Confidence 37889999999987665 1 4788899999999888853 2 3444433321 110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCC---CC-----CCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029526 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPS---SG-----PNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~---~~-----p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
... -+++++.+|+ ++.|+|+|-|+-|+.+-.+.. .. +....+..++|++.+ ++|+..=|+-
T Consensus 230 ---~~g-~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i- 301 (338)
T cd04733 230 ---RGG-FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT---KTPLMVTGGF- 301 (338)
T ss_pred ---CCC-CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc---CCCEEEeCCC-
Confidence 011 2577777775 567999999998875433311 00 122357778899888 6997775543
Q ss_pred CCHHHHHHHHhcC-CeEeecchHH
Q 029526 127 LSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 127 ~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+.+++.++++.| +.=|+++..+
T Consensus 302 ~t~~~a~~~l~~g~aD~V~lgR~~ 325 (338)
T cd04733 302 RTRAAMEQALASGAVDGIGLARPL 325 (338)
T ss_pred CCHHHHHHHHHcCCCCeeeeChHh
Confidence 3677899999887 6777777665
No 45
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.05 E-value=0.022 Score=51.03 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=84.7
Q ss_pred ChhhhcCCCEeEeeC----------CCC----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDG----------SHL----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~----------S~l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+=+ |.. ++|.-.+...++++-.++. | +.|--=|+.. |...
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~----D~~~- 218 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML----DLVE- 218 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccc----ccCC-
Confidence 368899999999977 332 4778899999999888863 2 2232222211 1110
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029526 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
.-.+++++.+|+ ++.|+|+|.|+.|..-...+.. .+....+..++|++.+ ++|+..-|+- .+.+
T Consensus 219 -----~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v---~iPVi~~G~i-~~~~ 289 (353)
T cd02930 219 -----GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV---DIPVIASNRI-NTPE 289 (353)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC---CCCEEEcCCC-CCHH
Confidence 124677877775 4579999999988521221110 0112355668898888 6997776653 3567
Q ss_pred HHHHHHhcC-CeEeecchHH
Q 029526 131 LIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 131 ~~~~~i~~G-i~KINi~T~l 149 (192)
++.++++.| +.=|-++..+
T Consensus 290 ~a~~~i~~g~~D~V~~gR~~ 309 (353)
T cd02930 290 VAERLLADGDADMVSMARPF 309 (353)
T ss_pred HHHHHHHCCCCChhHhhHHH
Confidence 899999987 5555544443
No 46
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.01 E-value=0.014 Score=48.44 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=85.6
Q ss_pred hhhhcCCCEeEeeCCC-----------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHH
Q 029526 2 EAIVLGFDSLMVDGSH-----------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
++.++||+-|=+-++. -.++.|.+...++++..++. ++.|-.=+ ..+ .+ . . .+..+
T Consensus 75 ~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~-r~~-~~--------~-~-~~~~~ 142 (231)
T cd02801 75 IVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI-RLG-WD--------D-E-EETLE 142 (231)
T ss_pred HHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE-eec-cC--------C-c-hHHHH
Confidence 5667899999887665 23456777788888777642 22221111 000 00 0 0 13344
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTE 148 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~ 148 (192)
..+.+++.|+|.|.+.-++..+.|. +..+++.+++|++.+ ++|++.-||-..+ +++.+++.. |+.-|-+++.
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~~~~~---~~~~~~~~~~i~~~~---~ipvi~~Ggi~~~-~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 143 LAKALEDAGASALTVHGRTREQRYS---GPADWDYIAEIKEAV---SIPVIANGDIFSL-EDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHHHcCC---CCCCHHHHHHHHhCC---CCeEEEeCCCCCH-HHHHHHHHhcCCCEEEEcHH
Confidence 4445667899999887666554443 334889899999877 6999999976654 558888887 8999999987
Q ss_pred HH
Q 029526 149 VR 150 (192)
Q Consensus 149 l~ 150 (192)
+.
T Consensus 216 ~l 217 (231)
T cd02801 216 AL 217 (231)
T ss_pred hH
Confidence 64
No 47
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.97 E-value=0.036 Score=45.01 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=82.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.++++|.+.+-+.+...+ ....+++++|+.+|+.+-.++ + ...+|+++.+ ....|+|.
T Consensus 72 ~~~~aGad~i~~h~~~~~-----~~~~~~i~~~~~~g~~~~v~~--~--------------~~~t~~e~~~-~~~~~~d~ 129 (202)
T cd04726 72 MAFKAGADIVTVLGAAPL-----STIKKAVKAAKKYGKEVQVDL--I--------------GVEDPEKRAK-LLKLGVDI 129 (202)
T ss_pred HHHhcCCCEEEEEeeCCH-----HHHHHHHHHHHHcCCeEEEEE--e--------------CCCCHHHHHH-HHHCCCCE
Confidence 478899999988876643 234678888998886443331 1 1356788887 66679998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+.-+. .+.-.+ ....++.++++++.. ++|++.=| |+..++++++.+.|+.-+=++|.+.
T Consensus 130 v~~~~~~-~~~~~~--~~~~~~~i~~~~~~~---~~~i~~~G--GI~~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 130 VILHRGI-DAQAAG--GWWPEDDLKKVKKLL---GVKVAVAG--GITPDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred EEEcCcc-cccccC--CCCCHHHHHHHHhhc---CCCEEEEC--CcCHHHHHHHHhcCCCEEEEeehhc
Confidence 8773221 111110 234567788887654 69999999 5568999999999999999999884
No 48
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=96.96 E-value=0.05 Score=50.31 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=102.1
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhC-----CCeEEEeccccccCCCCCc----cccccccC
Q 029526 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSK-----GMLVEAELGRLSGTEDGLT----VEDYEAKL 64 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~-----gv~VEaElG~i~g~e~~~~----~~~~~~~~ 64 (192)
..+++||+-+++|.|.- |.+.=.+++.++.++|-+. |.. ++..|=|.|.... ....+-.-
T Consensus 111 ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~v 187 (420)
T TIGR02810 111 AYVEAGFTKIHLDASMGCAGDPAPLDDATVAERAARLCAVAEAAATDRRGET---KPVYVIGTEVPVPGGALEALQTLAV 187 (420)
T ss_pred HHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHHhcCCC---CCeEEeccccCCCCchhhhccccCC
Confidence 35789999999999987 5566677777777755432 321 2333333332111 11122346
Q ss_pred CCHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe--ecCCCCC
Q 029526 65 TDVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL--HGASGLS 128 (192)
Q Consensus 65 T~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl--HGgSG~~ 128 (192)
|+|+.++.|++.. | |=.|-|--|+.-+-- +.-..|++..+++.+.++..+ .||. |-+-=.+
T Consensus 188 Ts~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~--~V~~y~~~~A~~Ls~~~~~~~-~lvfEaHSTDYQt 264 (420)
T TIGR02810 188 TTPEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHH--NVIHYQPERAQALSQVIDNTP-GLVFEAHSTDYQT 264 (420)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCC--ceeecCHHHHHHHHHHHHhCC-CceeecCCccCCC
Confidence 9999999999764 3 445777777732211 235678888999999886322 2665 5566688
Q ss_pred HHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 129 AELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 129 ~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+..++..++.|+.-.||+=.|--++++++-
T Consensus 265 ~~al~~lv~dgfaiLKVGPalTfalreAlf 294 (420)
T TIGR02810 265 PAALRALVRDHFAILKVGPALTFALREALF 294 (420)
T ss_pred HHHHHHHHhcCceeeeechhHhHHHHHHHH
Confidence 999999999999999999888777777753
No 49
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.91 E-value=0.018 Score=50.18 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=90.7
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|-+=.|.- +.++++....+.+++|+..|..|++-+...-+.++. ..++|+...
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~--------~~~~~~~~~ 152 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYE--------GEVPPERVA 152 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCC--------CCCCHHHHH
Confidence 68889988775544433 479999999999999999999999888866554442 236888777
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++++ -|+|.+.++ -.-|.- .|.-=.++++.|++..+ ++||-+|+ ..|+.-...-.|++.|+.-|+
T Consensus 153 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 153 EVAERLLDLGCDEISLG--DTIGVA---TPAQVRRLLEAVLERFP--DEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred HHHHHHHHcCCCEEEEC--CCCCcc---CHHHHHHHHHHHHHHCC--CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 76554 689887665 222221 24444556677776653 37776665 568888889999999998776
No 50
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.89 E-value=0.047 Score=49.66 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred ChhhhcCCCEeEeeCCC---C------------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccc---cccCCC
Q 029526 1 MEAIVLGFDSLMVDGSH---L------------------PFKDNISHTKYISFLAHSK---GMLVEAELGR---LSGTED 53 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~---l------------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~---i~g~e~ 53 (192)
++|.++||+.|-|=+.+ | ++|.-.+.+.+|++-.++. +..|-.=+.. +.+.++
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 37889999999998754 3 5789999999999988863 2233322221 001000
Q ss_pred CC-ccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCC-----CCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 54 GL-TVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSS-----GPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 54 ~~-~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~-----~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
.. ..++....--+++++.+++ ++.|+|+|-|+.|+....|... .+....+..+.|++.+ ++|++.-|+
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~ 313 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV---DVPVIMAGR 313 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC---CCCEEEeCC
Confidence 00 0000001123667766664 4679999999999854322111 1223356778899888 699999997
Q ss_pred CCCCHHHHHHHHhcC-CeEeecchHH
Q 029526 125 SGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 125 SG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
-- ..++..++++.| +.=|-++..+
T Consensus 314 i~-~~~~~~~~l~~g~~D~V~~gR~~ 338 (382)
T cd02931 314 ME-DPELASEAINEGIADMISLGRPL 338 (382)
T ss_pred CC-CHHHHHHHHHcCCCCeeeechHh
Confidence 75 556788888877 5566665554
No 51
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.88 E-value=0.048 Score=44.61 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=81.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec-cccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL-GRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl-G~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+.|-+.+-.-+ ....+++++|+++|+.+-.++ + ..|.+++++...+ .|+|
T Consensus 71 ~~~~~Gad~i~vh~~~~~-----~~~~~~i~~~~~~g~~~~~~~~~----------------~~t~~~~~~~~~~-~g~d 128 (206)
T TIGR03128 71 QAFAAGADIVTVLGVADD-----ATIKGAVKAAKKHGKEVQVDLIN----------------VKDKVKRAKELKE-LGAD 128 (206)
T ss_pred HHHHcCCCEEEEeccCCH-----HHHHHHHHHHHHcCCEEEEEecC----------------CCChHHHHHHHHH-cCCC
Confidence 568899998887765421 233678889999998776642 2 1355677777654 4999
Q ss_pred EEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 81 ALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+.+- +| |++ ......++.++++++..+ .++++.=| |+..+.+..+.+.|+.-+-+++.+.
T Consensus 129 ~v~~~----pg-~~~~~~~~~~~~~i~~l~~~~~--~~~i~v~G--GI~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 129 YIGVH----TG-LDEQAKGQNPFEDLQTILKLVK--EARVAVAG--GINLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred EEEEc----CC-cCcccCCCCCHHHHHHHHHhcC--CCcEEEEC--CcCHHHHHHHHHcCCCEEEEeehhc
Confidence 88652 22 211 112245677888887764 35665467 6788999999999999999998874
No 52
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.86 E-value=0.027 Score=47.27 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=84.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC--eEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM--LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv--~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++++|.+-|++....++ |....+++++....-.+ ++..--|.+.-. +. . +..-.+|.+..+.+++-|+
T Consensus 93 ~~~~~Ga~~v~iGs~~~~---~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~--g~---~-~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 93 SLLDLGVDRVILGTAAVE---NPEIVRELSEEFGSERVMVSLDAKDGEVVIK--GW---T-EKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred HHHHcCCCEEEEChHHhh---ChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC--CC---c-ccCCCCHHHHHHHHHHcCC
Confidence 578999999999887764 33344444444322112 343322333211 00 0 1112367777777788999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.+-+.=-+.=|.+ ...|++.|+++.+.+ ++|++.-||-..+++ +.++.+.|+..+-++|.+.
T Consensus 164 ~~i~~~~~~~~g~~----~g~~~~~i~~i~~~~---~iPvia~GGI~~~~d-i~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 164 GSILFTNVDVEGLL----EGVNTEPVKELVDSV---DIPVIASGGVTTLDD-LRALKEAGAAGVVVGSALY 226 (241)
T ss_pred CEEEEEeecCCCCc----CCCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCCEEEEEHHHh
Confidence 98864211112222 235899999999887 699999997775555 7789999999999999884
No 53
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.73 E-value=0.022 Score=53.08 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=83.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~Tg 78 (192)
+|+++|.+.|-+=-|.-+. +| .++.+++|+..|..|++-+....+ .+++++-..+++ .+.|
T Consensus 104 ~A~~~Gvd~irif~~lnd~-~n---~~~~v~~ak~~G~~v~~~i~~t~~------------p~~~~~~~~~~a~~l~~~G 167 (448)
T PRK12331 104 KSVENGIDIIRIFDALNDV-RN---LETAVKATKKAGGHAQVAISYTTS------------PVHTIDYFVKLAKEMQEMG 167 (448)
T ss_pred HHHHCCCCEEEEEEecCcH-HH---HHHHHHHHHHcCCeEEEEEEeecC------------CCCCHHHHHHHHHHHHHcC
Confidence 5789999887654444444 36 455799999999998887755431 135665544443 4579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeecc
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|.|.++ -.=|.- .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|...
T Consensus 168 ad~I~i~--Dt~G~l---~P~~v~~lv~alk~~~---~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~s 229 (448)
T PRK12331 168 ADSICIK--DMAGIL---TPYVAYELVKRIKEAV---TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTA 229 (448)
T ss_pred CCEEEEc--CCCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEee
Confidence 9988775 222322 2444456677777776 58888877 78999999999999999988653
No 54
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=96.72 E-value=0.13 Score=47.77 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=101.6
Q ss_pred hhhcCCCEeEeeCCCC------CH--HHHHHHHHHHHHHHHhC-----CCeEEEeccccccCCCCCc----cccccccCC
Q 029526 3 AIVLGFDSLMVDGSHL------PF--KDNISHTKYISFLAHSK-----GMLVEAELGRLSGTEDGLT----VEDYEAKLT 65 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l------~~--eeNi~~Tk~vv~~Ah~~-----gv~VEaElG~i~g~e~~~~----~~~~~~~~T 65 (192)
.+++||+-+++|.|.- |+ +.=.+++.++.++|-+. |.. ++..|=|.|.... ....+-.-|
T Consensus 116 yV~AGF~kIHLD~Sm~cagdp~pL~d~~vA~Raa~L~~~aE~~a~~~~~~~---~~vYvIGTEvP~pGGa~~~~~~~~vT 192 (426)
T PRK15458 116 YVAAGFKKIHLDCSMSCADDPIPLTDEIVAERAARLAKIAEETCREHFGES---DLVYVIGTEVPVPGGAHETLSELAVT 192 (426)
T ss_pred HHHcCCceEEecCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCCC---CCeEEeccccCCCCchhhhccccCCC
Confidence 5789999999999975 44 66677777777755432 221 2333333332111 111223469
Q ss_pred CHHHHHHHhhhh-------C-------CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe--ecCCCCCH
Q 029526 66 DVNQAEEFIDET-------D-------IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL--HGASGLSA 129 (192)
Q Consensus 66 ~peea~~Fv~~T-------g-------vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl--HGgSG~~~ 129 (192)
+|+.++.|++.. | |=.|-|--|+-=+. . +.-..|++..+++.+.++.. -+||. |-+-=.++
T Consensus 193 s~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~-~-~V~~y~~~~A~~Ls~~~~~~-~~lvfEaHSTDYQt~ 269 (426)
T PRK15458 193 TPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDH-T-NVIDYQPEKASALSQMVENY-ETLVFEAHSTDYQTP 269 (426)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecC-c-CccccCHHHHHHHHHHHHhC-CCceeecCCccCCCH
Confidence 999999999754 4 44567777775443 2 24567888889999888632 23565 55666889
Q ss_pred HHHHHHHhcCCeEeecchHHHHHHHHHh
Q 029526 130 ELIKGCIERGVRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 130 e~~~~~i~~Gi~KINi~T~l~~a~~~~~ 157 (192)
..++..++.|+.-.||+=.|--++++++
T Consensus 270 ~al~~lv~dgfaiLKVGPaLTfalReAl 297 (426)
T PRK15458 270 QALRQLVIDHFAILKVGPALTFALREAL 297 (426)
T ss_pred HHHHHHHhcCceeeeechhHhHHHHHHH
Confidence 9999999999999999998887777775
No 55
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.71 E-value=0.013 Score=49.27 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.+..+++.+.|+|.|-+. ..++.+.. ..-+++.|++|.+.. ++||.+|||-- +.+++++++..|..+|
T Consensus 31 ~~~~~e~a~~~~~~G~~~l~i~--dl~~~~~~--~~~~~~~i~~i~~~~---~~~l~v~GGi~-~~~~~~~~~~~Ga~~v 102 (241)
T PRK13585 31 YGDPVEVAKRWVDAGAETLHLV--DLDGAFEG--ERKNAEAIEKIIEAV---GVPVQLGGGIR-SAEDAASLLDLGVDRV 102 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--echhhhcC--CcccHHHHHHHHHHc---CCcEEEcCCcC-CHHHHHHHHHcCCCEE
Confidence 4589888888888999998544 55554432 445788888888777 69999999877 5577999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 103 ~iGs~~~ 109 (241)
T PRK13585 103 ILGTAAV 109 (241)
T ss_pred EEChHHh
Confidence 9999775
No 56
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.70 E-value=0.026 Score=47.14 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=80.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
-+++|.+-|-+|+..-|=. ....++++..|..+..+=|++. +.||++. ..+-|+|++
T Consensus 60 l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~~l~MADis-------------------t~ee~~~-A~~~G~D~I 116 (192)
T PF04131_consen 60 LAEAGADIIALDATDRPRP---ETLEELIREIKEKYQLVMADIS-------------------TLEEAIN-AAELGFDII 116 (192)
T ss_dssp HHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCTSEEEEE-S-------------------SHHHHHH-HHHTT-SEE
T ss_pred HHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhCcEEeeecC-------------------CHHHHHH-HHHcCCCEE
Confidence 4689999999999988655 5667888999988766655543 4466665 668899986
Q ss_pred EEecCcCCCCCCCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 83 AVCIGNVHGKYPSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 83 AvaiGt~HG~y~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+- .=-.|.+. ...-||++++++.+. ++|++.-|.-..| ++.++|+++|..-|=|+|.+-.
T Consensus 117 ~T----TLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tp-e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 117 GT----TLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTP-EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp E-----TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--SH-HHHHHHHHTT-SEEEE-HHHH-
T ss_pred Ec----ccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCH-HHHHHHHhcCCeEEEECcccCC
Confidence 64 33446432 245689999999874 5999999987765 5699999999999999998743
No 57
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.66 E-value=0.047 Score=49.06 Aligned_cols=129 Identities=11% Similarity=0.189 Sum_probs=82.5
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC-C------CeEEEeccccccCCC
Q 029526 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK-G------MLVEAELGRLSGTED 53 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~-g------v~VEaElG~i~g~e~ 53 (192)
++|.++||+.|-+-+.| . ++|...+...|+++-.++. | +.|---|+ .. +
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s---~~-~ 226 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS---PE-E 226 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC---cc-c
Confidence 36889999999998743 1 5788899999999888763 2 22222222 11 1
Q ss_pred CCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029526 54 GLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 54 ~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
... .- .++++..+| +++.|+|+|.|+.|+.+..-.. .+....+.++.|++.+. .++|++.-|+-.. .+
T Consensus 227 ~~~-----~g-~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~-~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t-~e 297 (353)
T cd04735 227 PEE-----PG-IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRR-GRDDNQTIMELVKERIA-GRLPLIAVGSINT-PD 297 (353)
T ss_pred ccC-----CC-CCHHHHHHHHHHHHHcCCCEEEeccCcccccccc-CCcchHHHHHHHHHHhC-CCCCEEEECCCCC-HH
Confidence 110 01 235666655 4567999999999876542111 13335667778887763 2589999886544 56
Q ss_pred HHHHHHhcCCeE
Q 029526 131 LIKGCIERGVRK 142 (192)
Q Consensus 131 ~~~~~i~~Gi~K 142 (192)
+..++++.|+.=
T Consensus 298 ~ae~~l~~gaD~ 309 (353)
T cd04735 298 DALEALETGADL 309 (353)
T ss_pred HHHHHHHcCCCh
Confidence 688998887443
No 58
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.65 E-value=0.061 Score=47.99 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|.+-|-+|.++-.-+ ...++++..++.+ +.|=+ | .-+++++|++ +.+.|+
T Consensus 101 ~l~eagv~~I~vd~~~G~~~----~~~~~i~~ik~~~p~v~Vi~--G----------------~v~t~~~A~~-l~~aGa 157 (325)
T cd00381 101 ALVEAGVDVIVIDSAHGHSV----YVIEMIKFIKKKYPNVDVIA--G----------------NVVTAEAARD-LIDAGA 157 (325)
T ss_pred HHHhcCCCEEEEECCCCCcH----HHHHHHHHHHHHCCCceEEE--C----------------CCCCHHHHHH-HHhcCC
Confidence 46788999999998764332 2233444444332 32222 1 2367788877 457999
Q ss_pred cEEEEecCc--CC-CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 DALAVCIGN--VH-GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt--~H-G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|+|.|.+|. .| +....+...-++..|.++.+.....++|++--||-..+ .++.+++.+|..=+-++|.+.
T Consensus 158 D~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~-~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 158 DGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTS-GDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred CEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCH-HHHHHHHHcCCCEEEecchhc
Confidence 999987653 11 11100011226777888877765446999988876655 559999999999999988874
No 59
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.62 E-value=0.049 Score=47.19 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=85.2
Q ss_pred hhhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=-| ..+.+|++...++++++|+..|..|+.=+-.. ..++|+...
T Consensus 79 ~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda--------------~r~~~~~l~ 144 (262)
T cd07948 79 IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDS--------------FRSDLVDLL 144 (262)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee--------------CCCCHHHHH
Confidence 688899998887544 34578999999999999999998776654222 335677776
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +.|+|.+- +.-.=|.- .|.-=.++++.|++.. ++||-+|+ .-|+.-.....|++.|+.-|+
T Consensus 145 ~~~~~~~~~g~~~i~--l~Dt~G~~---~P~~v~~~~~~~~~~~---~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd 214 (262)
T cd07948 145 RVYRAVDKLGVNRVG--IADTVGIA---TPRQVYELVRTLRGVV---SCDIEFHGHNDTGCAIANAYAALEAGATHID 214 (262)
T ss_pred HHHHHHHHcCCCEEE--ECCcCCCC---CHHHHHHHHHHHHHhc---CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 6654 46888654 43443432 2443445566777665 57877776 578888999999999998764
No 60
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.56 E-value=0.12 Score=43.65 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=100.0
Q ss_pred hhhhcC-CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccc------c--c
Q 029526 2 EAIVLG-FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVE------D--Y 60 (192)
Q Consensus 2 ~ai~~G-FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~------~--~ 60 (192)
++++.| -+.|-+=.-.++-++-.+..+++.++|+++|+.+=- ++| |+|......... . -
T Consensus 34 ~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~~~adGVHLg~~d~~~~~~r~~~~~~~ii 113 (221)
T PRK06512 34 AALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGDSRIAGRVKADGLHIEGNLAALAEAIEKHAPKMIV 113 (221)
T ss_pred HHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHHhCCCEEEECccccCHHHHHHhcCCCCEE
Confidence 578889 699999888899999999999999999999877643 333 343221111100 0 0
Q ss_pred c-ccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 61 E-AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~-~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
. +..++.+++.+ ..+.|+|.+++ |-+.-.-|...+..-+++++.+.+.+ ++|+|-=| |+..+++..+.+.|
T Consensus 114 G~s~~~s~~~a~~-A~~~gaDYv~~--Gpv~t~tK~~~~p~gl~~l~~~~~~~---~iPvvAIG--GI~~~n~~~~~~~G 185 (221)
T PRK06512 114 GFGNLRDRHGAME-IGELRPDYLFF--GKLGADNKPEAHPRNLSLAEWWAEMI---EIPCIVQA--GSDLASAVEVAETG 185 (221)
T ss_pred EecCCCCHHHHHH-hhhcCCCEEEE--CCCCCCCCCCCCCCChHHHHHHHHhC---CCCEEEEe--CCCHHHHHHHHHhC
Confidence 1 12457788777 55789999875 44421112222446788888888777 69999999 78999999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..=|=+-+.+.
T Consensus 186 A~giAvisai~ 196 (221)
T PRK06512 186 AEFVALERAVF 196 (221)
T ss_pred CCEEEEhHHhh
Confidence 99998877774
No 61
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.54 E-value=0.087 Score=46.16 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+. +.+.|+|++.++- ||........-.++.|.+|++.++. ++|++.-||-..+.+ +.+++.+|..=|-
T Consensus 181 ~s~~~a~~-a~~~G~d~I~v~~---~gG~~~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d-~~kal~lGAd~V~ 254 (299)
T cd02809 181 LTPEDALR-AVDAGADGIVVSN---HGGRQLDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTD-VLKALALGADAVL 254 (299)
T ss_pred CCHHHHHH-HHHCCCCEEEEcC---CCCCCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHH-HHHHHHcCCCEEE
Confidence 57888876 5588999999873 4432211123468889999887631 499999998877755 7888899999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
++|.+..+... . . .+-.....+.+++.++..|.++|+.
T Consensus 255 ig~~~l~~~~~---~-g---~~~v~~~i~~l~~el~~~m~~~G~~ 292 (299)
T cd02809 255 IGRPFLYGLAA---G-G---EAGVAHVLEILRDELERAMALLGCA 292 (299)
T ss_pred EcHHHHHHHHh---c-C---HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99988766542 1 1 1233445677888888899988864
No 62
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.53 E-value=0.062 Score=45.73 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=87.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec--cccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL--GRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl--G~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+.+++|++.|-+-.+.+. |....+++++..... +.|--.+ |.+-. .+ +.....+|.+..+.+++-|+
T Consensus 92 ~~l~~Ga~kvviGs~~l~---~p~l~~~i~~~~~~~-i~vsld~~~~~v~~--~G-----w~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 92 AALATGCARVNIGTAALE---NPEWCARVIAEHGDR-VAVGLDVRGHTLAA--RG-----WTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred HHHHCCCCEEEECchHhC---CHHHHHHHHHHhhhh-EEEEEEEeccEecc--CC-----eeecCccHHHHHHHHHhcCC
Confidence 568899999988666554 333444555443321 3222222 33311 01 11123577777777789999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH---hcCCeEeecchHHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI---ERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i---~~Gi~KINi~T~l~ 150 (192)
+.|.+-==+.-|.|.+ | |++.++++.+.+ ++|+..-||-+.+++ +.++. +.|+..+=+++.+.
T Consensus 161 ~~iiv~~~~~~g~~~G--~--d~~~i~~i~~~~---~ipviasGGi~s~~D-~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTG--P--NLELLREVCART---DAPVVASGGVSSLDD-LRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccC--C--CHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHhhhccCCccEEEEeHHHH
Confidence 9999876667777763 5 899999999887 699999999987766 55553 46999999998874
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.52 E-value=0.17 Score=43.32 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=95.5
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|++-|-+=.|.-+ -++.+...++++++|+..|..|. ++. ++ ...++|+...
T Consensus 77 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~----~~--------~~~~~~~~~~ 142 (259)
T cd07939 77 AALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA----ED--------ASRADPDFLI 142 (259)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee----cc--------CCCCCHHHHH
Confidence 567888887766544443 36778899999999999998664 222 22 1347888888
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029526 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
+++++ -|+|.+.++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.......|++.|+.-|
T Consensus 143 ~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s 214 (259)
T cd07939 143 EFAEVAQEAGADRLRFA--DTVGIL---DPFTTYELIRRLRAAT---DLPLEFHAHNDLGLATANTLAAVRAGATHVSVT 214 (259)
T ss_pred HHHHHHHHCCCCEEEeC--CCCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEe
Confidence 88764 588876553 222222 1322234455666655 47777766 56888888999999998876
Q ss_pred ---------ecchHHHHHHHHHh-c-CCCCChHHHHH
Q 029526 144 ---------NVNTEVRKAYMDSL-S-RPKSDLIHLMA 169 (192)
Q Consensus 144 ---------Ni~T~l~~a~~~~~-~-~~~~~~~~~~~ 169 (192)
|..|+....+.+.. . +.+.|+..+..
T Consensus 215 ~~G~G~~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~ 251 (259)
T cd07939 215 VNGLGERAGNAALEEVVMALKHLYGRDTGIDTTRLPE 251 (259)
T ss_pred cccccccccCcCHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 56777777777665 2 23346555544
No 64
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.49 E-value=0.074 Score=44.77 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=93.3
Q ss_pred hhhhcCCCEeE--eeCC--------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLM--VDGS--------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM--~D~S--------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
++.++|++.|. +++| ....++++....+.+++|++.|..|+.-+-.+.. ..++|++..
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------~~~~~~~l~ 149 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG------------CKTDPEYVL 149 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC------------CCCCHHHHH
Confidence 56777876654 5666 3567789999999999999999888776654432 136666666
Q ss_pred HHhh---hhCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe-
Q 029526 72 EFID---ETDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF- 143 (192)
Q Consensus 72 ~Fv~---~TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI- 143 (192)
++++ +-|+|.+-++ +|.. .|.-=.++++.+++..+ ++||.+|+ .-|+.......|+..|+.-|
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~~-------~P~~v~~li~~l~~~~~--~~~~~~H~Hn~~gla~an~laA~~aG~~~id 220 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGLA-------TPEEVAELVKALREALP--DVPLGLHTHNTLGLAVANSLAALEAGADRVD 220 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCCc-------CHHHHHHHHHHHHHhCC--CCeEEEEeCCCCChHHHHHHHHHHcCCCEEE
Confidence 6654 5789887764 3331 24434455677777763 38899888 45777888899999998776
Q ss_pred -----------ecchHHHHHHHHHh
Q 029526 144 -----------NVNTEVRKAYMDSL 157 (192)
Q Consensus 144 -----------Ni~T~l~~a~~~~~ 157 (192)
|..|+....+.+..
T Consensus 221 ~s~~G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 221 GSVNGLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred eccccccccccCccHHHHHHHHHhc
Confidence 45666666665554
No 65
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.49 E-value=0.064 Score=46.55 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCC-------CCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029526 2 EAIVLGFDSLMVDGSH-------LPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-------l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
++.++||+-|-+-.|. ..+..+.+.+.++++..++. +++|=.=|+- ..++..+..+.
T Consensus 110 ~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~---------------~~~~~~~~a~~ 174 (296)
T cd04740 110 KLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP---------------NVTDIVEIARA 174 (296)
T ss_pred HHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC---------------CchhHHHHHHH
Confidence 4556788888776553 23556778888888888876 6665555431 12345565666
Q ss_pred hhhhCCcEEEEecCcCC-----------------CCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 74 IDETDIDALAVCIGNVH-----------------GKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~H-----------------G~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.+.+ ++|.+ |.|.+. ...+.++.+++|++.+ ++|++-=||--.+ +++.++
T Consensus 175 ~~~~G~d~i~~-~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GGI~~~-~da~~~ 249 (296)
T cd04740 175 AEEAGADGLTL-INTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGGIASG-EDALEF 249 (296)
T ss_pred HHHcCCCEEEE-ECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEECCCCCH-HHHHHH
Confidence 78899999865 33322 344321 0124567788888877 6999877755444 779999
Q ss_pred HhcCCeEeecchHHH
Q 029526 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+..|..=|-++|.+.
T Consensus 250 l~~GAd~V~igra~l 264 (296)
T cd04740 250 LMAGASAVQVGTANF 264 (296)
T ss_pred HHcCCCEEEEchhhh
Confidence 999999999999875
No 66
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.47 E-value=0.05 Score=49.42 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|++.|-+=.|.-+ .+|+++..++.+++|+..|..|.. + .+| ...++|+...
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~--~----~ed--------~~r~~~~~l~ 148 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF--S----AED--------ASRTDLDFLI 148 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--E----ecc--------CCCCCHHHHH
Confidence 578889988776555444 599999999999999999977654 2 222 1357888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeEeec
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+.++ -|+ |.- .|.-=.++++.+++.+ ++||-+|+= .|+.-...-.|+..|+.-|+.
T Consensus 149 ~~~~~~~~~Ga~~I~l~-DT~-G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~ 219 (378)
T PRK11858 149 EFAKAAEEAGADRVRFC-DTV-GIL---DPFTMYELVKELVEAV---DIPIEVHCHNDFGMATANALAGIEAGAKQVHT 219 (378)
T ss_pred HHHHHHHhCCCCEEEEe-ccC-CCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEE
Confidence 8865 4689987765 222 322 2433345556666665 588887764 567777888899999888753
No 67
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.45 E-value=0.066 Score=48.45 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=85.5
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029526 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|-|-+.|- ++|.=.+...||++-.++. |-. - || +|...+ ...
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~--~-igvRis~~~-~~~-- 239 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD--R-IGIRISPLG-TFN-- 239 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC--e-EEEEECCcc-ccc--
Confidence 478999999999998883 5777788999999988763 211 1 22 222211 000
Q ss_pred cccccCCCHHH-HHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029526 59 DYEAKLTDVNQ-AEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 59 ~~~~~~T~pee-a~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
..+.- .+++| +.++ +++.|||+|-|+.|..|+. +.+..+.-++|++.+ ++|+..-|+ .+.++..+
T Consensus 240 ~~~~G-~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-----~~~~~~~~~~ik~~~---~~pv~~~G~--~~~~~ae~ 308 (362)
T PRK10605 240 NVDNG-PNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-----EPYSDAFREKVRARF---HGVIIGAGA--YTAEKAET 308 (362)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHcCCCEEEeccccccCC-----ccccHHHHHHHHHHC---CCCEEEeCC--CCHHHHHH
Confidence 00111 24444 4554 4567999999998866542 222334457888887 689887775 57888999
Q ss_pred HHhcC-CeEeecchHH
Q 029526 135 CIERG-VRKFNVNTEV 149 (192)
Q Consensus 135 ~i~~G-i~KINi~T~l 149 (192)
+++.| +-=|-++..+
T Consensus 309 ~i~~G~~D~V~~gR~~ 324 (362)
T PRK10605 309 LIGKGLIDAVAFGRDY 324 (362)
T ss_pred HHHcCCCCEEEECHHh
Confidence 99998 5666666555
No 68
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.44 E-value=0.15 Score=46.28 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=93.9
Q ss_pred ChhhhcCCCEeEeeCCC--------------------CCHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH--------------------LPFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------------------l~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ =++|...+...||++-.++. | ..|-- ++.+.+.....
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~v---Ris~~~~~~~~ 227 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIIL---RFSQWKQQDYT 227 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEE---EECcccccccc
Confidence 36889999999999888 16899999999999999974 3 33333 23221110000
Q ss_pred ccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC--------
Q 029526 58 EDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-------- 126 (192)
Q Consensus 58 ~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-------- 126 (192)
...-.+++++.++ +++.|+|+|-|+.|+.+...- +..+.+..+.+++.+ ++|+...|+-.
T Consensus 228 ---~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~---~~~~~~~~~~~k~~~---~~pv~~~G~i~~~~~~~~~ 298 (361)
T cd04747 228 ---ARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF---EGSELNLAGWTKKLT---GLPTITVGSVGLDGDFIGA 298 (361)
T ss_pred ---cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc---CccchhHHHHHHHHc---CCCEEEECCcccccccccc
Confidence 0011467888888 677899999999987543211 122556667888887 69999999742
Q ss_pred ---------CCHHHHHHHHhcC-CeEeecchHH
Q 029526 127 ---------LSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 127 ---------~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
.+.++..++++.| +.-|-++..+
T Consensus 299 ~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ 331 (361)
T cd04747 299 FAGDEGASPASLDRLLERLERGEFDLVAVGRAL 331 (361)
T ss_pred cccccccccCCHHHHHHHHHCCCCCeehhhHHH
Confidence 4778999999987 6666666554
No 69
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.44 E-value=0.061 Score=44.77 Aligned_cols=132 Identities=11% Similarity=0.101 Sum_probs=86.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++++|.+.|.+..+.++-.+. .+++++.... .-+++..--|.+.- .. .. +....+|.+..+.+++-|+|
T Consensus 91 ~~~~~Ga~~vilg~~~l~~~~~---l~ei~~~~~~~i~vsid~k~~~v~~-~g----~~-~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 91 ALLDAGVSRVIIGTAAVKNPEL---VKEACKKFPGKIVVGLDARDGKVAT-DG----WL-ETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred HHHHcCCCEEEECchHHhCHHH---HHHHHHHhCCCceeeeeccCCEEEE-cc----Ce-ecCCCCHHHHHHHHHhcCCC
Confidence 5678899999999988864443 3444443321 22333322122211 00 00 11246788888888899999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~ 150 (192)
.+-+-==+.=|.|.+ .|++.++++.+.+ ++|++.-||-+.+++ ++++.+.| +..+=+++.+.
T Consensus 162 ~ii~~~~~~~g~~~G----~d~~~i~~l~~~~---~ipvia~GGi~~~~d-i~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 162 AIIYTDISRDGTLSG----PNVEATRELAAAV---PIPVIASGGVSSLDD-IKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred EEEEeeecCcCCcCC----CCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCccEEEEEHHHH
Confidence 665431112244432 4899999999887 699999999887665 99999988 99999998874
No 70
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.38 E-value=0.11 Score=44.56 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=79.8
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhh
Q 029526 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~ 75 (192)
+|+++|.+-|.+ .++ .+-.+.++..+++.+.||++|+.+=..+.. ++. +.. +.++++ +.+-..
T Consensus 98 ~al~~Ga~~v~~~~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~~-----~Gv---h~~--~~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 98 DAIRMGADAVSIHVNVGS-DTEWEQIRDLGMIAEICDDWGVPLLAMMYP-----RGP---HID--DRDPELVAHAARLGA 166 (258)
T ss_pred HHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCc---ccc--cccHHHHHHHHHHHH
Confidence 688999765443 344 345688999999999999999777653221 111 000 122333 223344
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-----HHHHHHHHhcCCeEeecchHH
Q 029526 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-----AELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-----~e~~~~~i~~Gi~KINi~T~l 149 (192)
+.|+|++.++ |+ .+++.|+++.+.. ++|+|.=||-..+ .+.+..+++.|+.-+=+++.+
T Consensus 167 ~~GADyikt~-------~~-----~~~~~l~~~~~~~---~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 167 ELGADIVKTP-------YT-----GDIDSFRDVVKGC---PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHCCCEEecc-------CC-----CCHHHHHHHHHhC---CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 6899999975 33 2677888887766 6999999988753 455667779999955555444
No 71
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.31 E-value=0.11 Score=40.41 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.+.++||+-|.+.++..++ .+...++++..++. ++.|-..+..... .+++ .+.+.|+
T Consensus 79 ~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~~~~~v~~~~~~~~~----------------~~~~--~~~~~g~ 137 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL---AREDLELIRELREAVPDVKVVVKLSPTGE----------------LAAA--AAEEAGV 137 (200)
T ss_pred HHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhcCCceEEEEECCCCc----------------cchh--hHHHcCC
Confidence 5788999999999999764 34444555544443 6777777644311 0111 1567799
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH-HHHHHHHhcCCeEeecch
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA-ELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~-e~~~~~i~~Gi~KINi~T 147 (192)
|.+.+.-++..+.+....+ -....++.++... ++|++.=| |+.. +++.++++.|..=|-+++
T Consensus 138 d~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~pi~~~G--Gi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 138 DEVGLGNGGGGGGGRDAVP-IADLLLILAKRGS---KVPVIAGG--GINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CEEEEcCCcCCCCCccCch-hHHHHHHHHHhcC---CCCEEEEC--CCCCHHHHHHHHHhCCCEEEecC
Confidence 9998876655444332111 1124455555544 69999866 5555 889999999987776653
No 72
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.28 E-value=0.11 Score=43.52 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=80.5
Q ss_pred hhhcCCCEeEeeCC--CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 3 AIVLGFDSLMVDGS--HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 3 ai~~GFtSVM~D~S--~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+-++|.+.|.+.-| .+|++| ..+.++.|+.+|+.+=.+.|. ++++++ +.+.+.|
T Consensus 81 l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~-------------------~~~~~~-~~~~~~~ 136 (223)
T PRK04302 81 VKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNN-------------------PETSAA-AAALGPD 136 (223)
T ss_pred HHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCC-------------------HHHHHH-HhcCCCC
Confidence 45789999999998 688887 578899999988765554332 345555 4566889
Q ss_pred EEEE----ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 81 ALAV----CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 81 ~LAv----aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++++ ++||-=+.... .|..-.+.++.|++... ++|++. ||+=.+.++.+++.+.|+.=+=++|.+.
T Consensus 137 ~I~~~p~~~igt~~~~~~~-~~~~i~~~~~~ir~~~~--~~pvi~-GggI~~~e~~~~~~~~gadGvlVGsa~l 206 (223)
T PRK04302 137 YVAVEPPELIGTGIPVSKA-KPEVVEDAVEAVKKVNP--DVKVLC-GAGISTGEDVKAALELGADGVLLASGVV 206 (223)
T ss_pred EEEEeCccccccCCCCCcC-CHHHHHHHHHHHHhccC--CCEEEE-ECCCCCHHHHHHHHcCCCCEEEEehHHh
Confidence 8885 35542222211 23333333444555332 588876 5544478889999999999898999885
No 73
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.24 E-value=0.11 Score=45.03 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=86.4
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+-.|. .+.+++++..++.+++|+..|..|.. +.. ...| ...++|+.+.
T Consensus 86 ~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~--~~~-~~~d--------~~~~~~~~~~ 154 (273)
T cd07941 86 ALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF--DAE-HFFD--------GYKANPEYAL 154 (273)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE--eEE-eccc--------cCCCCHHHHH
Confidence 4788999999985443 45689999999999999999986643 211 1111 1357888888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +-|+|.+.++ -.=|.- .|.-=.++++.+++... ++||-+|+ .-|+.-...-.|++.|+.-|.
T Consensus 155 ~~~~~~~~~g~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~l~~H~Hnd~Gla~An~laA~~aGa~~id 225 (273)
T cd07941 155 ATLKAAAEAGADWLVLC--DTNGGT---LPHEIAEIVKEVRERLP--GVPLGIHAHNDSGLAVANSLAAVEAGATQVQ 225 (273)
T ss_pred HHHHHHHhCCCCEEEEe--cCCCCC---CHHHHHHHHHHHHHhCC--CCeeEEEecCCCCcHHHHHHHHHHcCCCEEE
Confidence 8874 4688876543 222222 24444566777777663 37777776 457778888999999998875
No 74
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.24 E-value=0.15 Score=46.42 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=84.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|++.+ +.|+|.+-|| -||.-.-....-.++.|.+|++.+ ++|+.+-||--.+.| +-||+.+|-.-+
T Consensus 244 V~~~eda~~a~-~~G~d~I~VS---nhGGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~g~D-v~KALaLGA~aV 315 (361)
T cd04736 244 IVTAEDAKRCI-ELGADGVILS---NHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRRGSD-IVKALALGANAV 315 (361)
T ss_pred CCCHHHHHHHH-HCCcCEEEEC---CCCcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCCHHH-HHHHHHcCCCEE
Confidence 47899999976 5799999987 376422111112488999998887 699999999877665 889999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
=+++.+.++.... -..-...+.+.+++.++..|.++|+..
T Consensus 316 ~iGr~~l~~la~~-------G~~gv~~~l~~l~~el~~~m~l~G~~~ 355 (361)
T cd04736 316 LLGRATLYGLAAR-------GEAGVSEVLRLLKEEIDRTLALIGCPD 355 (361)
T ss_pred EECHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999877432 122345567788888889999998753
No 75
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.22 E-value=0.26 Score=42.59 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|.+-|-++++.++. ...++++++||.+|..+=+|+- +.+|+++ +.+.|+|.
T Consensus 128 ~a~~~GAD~VlLi~~~l~~----~~l~~li~~a~~lGl~~lvevh-------------------~~~E~~~-A~~~gadi 183 (260)
T PRK00278 128 EARAAGADAILLIVAALDD----EQLKELLDYAHSLGLDVLVEVH-------------------DEEELER-ALKLGAPL 183 (260)
T ss_pred HHHHcCCCEEEEEeccCCH----HHHHHHHHHHHHcCCeEEEEeC-------------------CHHHHHH-HHHcCCCE
Confidence 5788999999999999875 4678999999999988777743 3345544 44679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+. +.-.. .-..|++++.++...+.. .+|++-=|| ..+.++++++.++|+.=|=++|.+.
T Consensus 184 Igin-----~rdl~-~~~~d~~~~~~l~~~~p~-~~~vIaegG-I~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 184 IGIN-----NRNLK-TFEVDLETTERLAPLIPS-DRLVVSESG-IFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred EEEC-----CCCcc-cccCCHHHHHHHHHhCCC-CCEEEEEeC-CCCHHHHHHHHHcCCCEEEECHHHc
Confidence 8863 21111 245678888888776531 246555332 3368999999999999999999885
No 76
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.18 E-value=0.52 Score=38.09 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=94.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcc--------cccc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTV--------EDYE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~--------~~~~ 61 (192)
++++.|.+.|-+---.++-.+-.+..+++..+|+++|+.+=- ++|. ++...-.... ....
T Consensus 21 ~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~~~la~~~g~~GvHl~~~~~~~~~~r~~~~~~~~ig 100 (196)
T TIGR00693 21 AALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALALGADGVHLGQDDLPASEARALLGPDKIIG 100 (196)
T ss_pred HHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCEEE
Confidence 578899999999887788888888889999999888765543 2332 2211000000 0001
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCC-CCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHG-KYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
....+++++.+ ..+.|+|.+.+ |++.- .-+++ .|.+.+++|+++.+... ++|++.=| |+..++++++.+.|
T Consensus 101 ~s~h~~~e~~~-a~~~g~dyi~~--~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~G--GI~~~~~~~~~~~G 173 (196)
T TIGR00693 101 VSTHNLEELAE-AEAEGADYIGF--GPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIG--GITLENAAEVLAAG 173 (196)
T ss_pred EeCCCHHHHHH-HhHcCCCEEEE--CCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEEC--CcCHHHHHHHHHcC
Confidence 12356788877 66789999764 55421 11111 15578999999987652 48988888 56789999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|=+.+.+.
T Consensus 174 ~~gva~~~~i~ 184 (196)
T TIGR00693 174 ADGVAVVSAIM 184 (196)
T ss_pred CCEEEEhHHhh
Confidence 99888888774
No 77
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.15 E-value=0.087 Score=44.11 Aligned_cols=136 Identities=11% Similarity=0.113 Sum_probs=81.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC--eEEEeccccccCCCCCccccc-cccCCCHHHHHHHhhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM--LVEAELGRLSGTEDGLTVEDY-EAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv--~VEaElG~i~g~e~~~~~~~~-~~~~T~peea~~Fv~~Tg 78 (192)
+++++|++-|++..+.+.-. ...+++++.....-+ ++..=.|.++ .+..+....+ ...-.+|.+..+.+++-|
T Consensus 91 ~~~~~G~~~vilg~~~l~~~---~~~~~~~~~~~~~~i~vsld~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~G 166 (232)
T TIGR03572 91 KLLSLGADKVSINTAALENP---DLIEEAARRFGSQCVVVSIDVKKELDG-SDYKVYSDNGRRATGRDPVEWAREAEQLG 166 (232)
T ss_pred HHHHcCCCEEEEChhHhcCH---HHHHHHHHHcCCceEEEEEEeccCCCC-CcEEEEECCCcccCCCCHHHHHHHHHHcC
Confidence 45678999999987766433 334444433211112 3333222110 0000000000 112245666666677889
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH-HHhcCCeEeecchHH
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG-CIERGVRKFNVNTEV 149 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~-~i~~Gi~KINi~T~l 149 (192)
+|.+-+.-=+.-|.+ +..|++.+++|.+.+ ++|++.=||-.. .+++.+ +.+.|+..|-++|.+
T Consensus 167 ~d~i~i~~i~~~g~~----~g~~~~~~~~i~~~~---~ipvia~GGi~s-~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 167 AGEILLNSIDRDGTM----KGYDLELIKTVSDAV---SIPVIALGGAGS-LDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCEEEEeCCCccCCc----CCCCHHHHHHHHhhC---CCCEEEECCCCC-HHHHHHHHHHcCCCEEEEehhh
Confidence 999987631122222 345899999999887 699999999874 455777 778999999999986
No 78
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.12 E-value=0.2 Score=42.64 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=84.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+.+++|.+-|-+..+.+ +|....+++.+.-.. .=+++-.-=|.+-.. .+ .+..-.+|.+..+.+++-|+.
T Consensus 93 ~~l~~Ga~kvvigt~a~---~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~-----gw-~~~~~~~~~~~~~~~~~~g~~ 163 (234)
T PRK13587 93 DYFAAGINYCIVGTKGI---QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVN-----GW-EEDTELNLFSFVRQLSDIPLG 163 (234)
T ss_pred HHHHCCCCEEEECchHh---cCHHHHHHHHHHcCCCEEEEEEeeCCEEEec-----CC-cccCCCCHHHHHHHHHHcCCC
Confidence 56788999998866554 344444444433211 113333322332100 01 122346788888888888876
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
-+-+.==+.-|...+ .|+++++++.+.+ ++|+...||-+.++ +++++.+.|+.-+-++|.+..
T Consensus 164 ~ii~tdi~~dGt~~G----~~~~li~~l~~~~---~ipvi~~GGi~s~e-di~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 164 GIIYTDIAKDGKMSG----PNFELTGQLVKAT---TIPVIASGGIRHQQ-DIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred EEEEecccCcCCCCc----cCHHHHHHHHHhC---CCCEEEeCCCCCHH-HHHHHHHcCCCEEEEhHHHHh
Confidence 444432233444432 4888999998877 69999999999665 588888999999999999864
No 79
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.12 E-value=0.68 Score=40.19 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=87.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+++++|.+.|-+=.+..+ +...++.+++|+..|..|..=+... +. ..++|+...++++ +.|
T Consensus 99 ~~~~~g~~~iri~~~~~~----~~~~~~~i~~ak~~G~~v~~~i~~~----~~--------~~~~~~~~~~~~~~~~~~G 162 (275)
T cd07937 99 KAAKNGIDIFRIFDALND----VRNLEVAIKAVKKAGKHVEGAICYT----GS--------PVHTLEYYVKLAKELEDMG 162 (275)
T ss_pred HHHHcCCCEEEEeecCCh----HHHHHHHHHHHHHCCCeEEEEEEec----CC--------CCCCHHHHHHHHHHHHHcC
Confidence 456778877766322222 6788899999999998777533221 11 2467877777754 468
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee------------
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN------------ 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN------------ 144 (192)
+|.+-++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.-.....|++.|+.-|.
T Consensus 163 a~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN 234 (275)
T cd07937 163 ADSICIK--DMAGLL---TPYAAYELVKALKKEV---GLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQ 234 (275)
T ss_pred CCEEEEc--CCCCCC---CHHHHHHHHHHHHHhC---CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCC
Confidence 9986654 332322 1333345556666665 58888888 678888999999999988774
Q ss_pred cchHHHHHHHHHh
Q 029526 145 VNTEVRKAYMDSL 157 (192)
Q Consensus 145 i~T~l~~a~~~~~ 157 (192)
..|+...++.+..
T Consensus 235 ~~~E~l~~~L~~~ 247 (275)
T cd07937 235 PSTESMVAALRGT 247 (275)
T ss_pred hhHHHHHHHHHcc
Confidence 5666666666554
No 80
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.11 E-value=0.12 Score=42.87 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+++++++.. +.|+|.+.+--... |.+........++.++++++.+ ++|+++.||-.. .++++++++.|..=|-
T Consensus 110 ~~~~~~~~~~-~~gad~i~~~~~~~-~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~-~~~v~~~l~~GadgV~ 183 (236)
T cd04730 110 TSVEEARKAE-AAGADALVAQGAEA-GGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIAD-GRGIAAALALGADGVQ 183 (236)
T ss_pred CCHHHHHHHH-HcCCCEEEEeCcCC-CCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCC-HHHHHHHHHcCCcEEE
Confidence 3567887755 47899987522111 2222111124578889888877 699999996433 3789999999999999
Q ss_pred cchHHHHHH
Q 029526 145 VNTEVRKAY 153 (192)
Q Consensus 145 i~T~l~~a~ 153 (192)
++|.+....
T Consensus 184 vgS~l~~~~ 192 (236)
T cd04730 184 MGTRFLATE 192 (236)
T ss_pred EchhhhcCc
Confidence 999885443
No 81
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.05 E-value=0.13 Score=47.70 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=82.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
..+++|++-|++|.++-.= + ...+.++..++. ++.|=+ | .-.++++|+..+ +.|+
T Consensus 231 ~L~~aG~d~I~vd~a~g~~-~---~~~~~i~~i~~~~~~~~vi~--G----------------~v~t~~~a~~l~-~aGa 287 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHS-I---YVIDSIKEIKKTYPDLDIIA--G----------------NVATAEQAKALI-DAGA 287 (450)
T ss_pred HHHHhCCCEEEEECCCCcH-h---HHHHHHHHHHHhCCCCCEEE--E----------------eCCCHHHHHHHH-HhCC
Confidence 4578999999999988421 2 233333333332 233222 1 247788888866 6799
Q ss_pred cEEEEecCcCCCCCCC---CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 DALAVCIGNVHGKYPS---SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~---~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++-|++|.--=.+.. +...-.+..+.++.+..+..++|+.-=||--.|.| +.+|+.+|..=+=++|.|.
T Consensus 288 d~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~d-i~kAla~GA~~V~~G~~~a 360 (450)
T TIGR01302 288 DGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGD-IVKALAAGADAVMLGSLLA 360 (450)
T ss_pred CEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHH-HHHHHHcCCCEEEECchhh
Confidence 9999876431101110 11112567777777766555899999999888766 9999999999999999883
No 82
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.04 E-value=0.15 Score=45.11 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
-+++++|++ +++.|+|.|.+ -|.--|.|.+ ..-++++|+++.+.+ ++|++.-||-+.+.+ ++++..+|..=|
T Consensus 116 v~s~~~a~~-a~~~GaD~Ivv-~g~eagGh~g--~~~~~~ll~~v~~~~---~iPviaaGGI~~~~~-~~~al~~GA~gV 187 (307)
T TIGR03151 116 VASVALAKR-MEKAGADAVIA-EGMESGGHIG--ELTTMALVPQVVDAV---SIPVIAAGGIADGRG-MAAAFALGAEAV 187 (307)
T ss_pred cCCHHHHHH-HHHcCCCEEEE-ECcccCCCCC--CCcHHHHHHHHHHHh---CCCEEEECCCCCHHH-HHHHHHcCCCEe
Confidence 367788877 44679999987 3444445543 223799999999888 699999998887654 999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
-++|.+.
T Consensus 188 ~iGt~f~ 194 (307)
T TIGR03151 188 QMGTRFL 194 (307)
T ss_pred ecchHHh
Confidence 9999774
No 83
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.02 E-value=0.23 Score=45.64 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=84.4
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|+..+ +.|||.+-|| -||.-......--++.|.+|++.+.. .+|+++-||-..+.| +.||+.+|..=+
T Consensus 261 V~~~~dA~~a~-~~G~d~I~vs---nhGGr~~d~~~~t~~~L~ei~~~~~~-~~~vi~dGGIr~G~D-v~KALaLGA~~v 334 (383)
T cd03332 261 ILHPDDARRAV-EAGVDGVVVS---NHGGRQVDGSIAALDALPEIVEAVGD-RLTVLFDSGVRTGAD-IMKALALGAKAV 334 (383)
T ss_pred CCCHHHHHHHH-HCCCCEEEEc---CCCCcCCCCCcCHHHHHHHHHHHhcC-CCeEEEeCCcCcHHH-HHHHHHcCCCEE
Confidence 46888888866 6899999888 36543211111247789999888742 499999999887765 899999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
-+++.+.++.... -..-.....+.+++.++..|.++|+..
T Consensus 335 ~iGr~~l~~l~~~-------G~~gv~~~l~~l~~El~~~m~l~G~~~ 374 (383)
T cd03332 335 LIGRPYAYGLALG-------GEDGVEHVLRNLLAELDLTMGLAGIRS 374 (383)
T ss_pred EEcHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999877431 123345567788888889999999753
No 84
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=96.01 E-value=0.11 Score=46.51 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029526 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|-+-+.+- ++|.=.+...||++-.++. |. +- +| ++...+ ....
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~--d~-v~vRis~~~-~~~~- 233 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGA--DR-VGIRLSPFG-TFND- 233 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCC--Cc-eEEEECccc-cCCC-
Confidence 368899999999998771 4677788889998888863 32 11 22 222211 1100
Q ss_pred cccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 59 DYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 59 ~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
...--++++..+|+ ++.|+|+|.|+-|..+... +..+.+..++|++.+ ++|+..=|+-- .++..++
T Consensus 234 --~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~---~ipvi~~G~i~--~~~a~~~ 302 (338)
T cd02933 234 --MGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAF---KGPLIAAGGYD--AESAEAA 302 (338)
T ss_pred --CCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHc---CCCEEEECCCC--HHHHHHH
Confidence 00012466666664 5569999999888655432 445778889999988 69999888764 7889999
Q ss_pred HhcC-CeEeecchHH
Q 029526 136 IERG-VRKFNVNTEV 149 (192)
Q Consensus 136 i~~G-i~KINi~T~l 149 (192)
++.| +-=|=++..+
T Consensus 303 l~~g~~D~V~~gR~~ 317 (338)
T cd02933 303 LADGKADLVAFGRPF 317 (338)
T ss_pred HHcCCCCEEEeCHhh
Confidence 9987 5555555443
No 85
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.01 E-value=0.067 Score=44.59 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=62.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+++++.|+|.|-|. +..+...+ ...|++.+++|.+.+ ++|+-+ ||-=.+.++++++...|+.+|-
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~--dl~~~~~g--~~~~~~~i~~i~~~~---~~pi~~-ggGI~~~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVV--DLDGAKEG--GPVNLPVIKKIVRET---GVPVQV-GGGIRSLEDVEKLLDLGVDRVI 99 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--eCCccccC--CCCcHHHHHHHHHhc---CCCEEE-eCCcCCHHHHHHHHHcCCCEEE
Confidence 589998888899999999885 55554332 446899999999887 699999 4423456889999999999999
Q ss_pred cchHHHH
Q 029526 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 100 lgs~~l~ 106 (230)
T TIGR00007 100 IGTAAVE 106 (230)
T ss_pred EChHHhh
Confidence 9987743
No 86
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.00 E-value=0.26 Score=48.59 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=83.4
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-|-+.| + ++|..++...||++..++. +..|-.=|......+.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~---- 633 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG---- 633 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC----
Confidence 36889999999987763 1 5899999999999999973 2334333332211111
Q ss_pred ccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029526 58 EDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
--+++++.+|+ ++.|+|+|-|+.|..+.... .-.+....+..++|++.+ ++|+..-|+-- +.++..
T Consensus 634 ------g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pv~~~G~i~-~~~~a~ 703 (765)
T PRK08255 634 ------GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEA---GIATIAVGAIS-EADHVN 703 (765)
T ss_pred ------CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHc---CCEEEEeCCCC-CHHHHH
Confidence 13566666664 56799999999886542211 101233455567888887 69988888764 556789
Q ss_pred HHHhcCC
Q 029526 134 GCIERGV 140 (192)
Q Consensus 134 ~~i~~Gi 140 (192)
++++.|.
T Consensus 704 ~~l~~g~ 710 (765)
T PRK08255 704 SIIAAGR 710 (765)
T ss_pred HHHHcCC
Confidence 9998773
No 87
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=95.97 E-value=0.13 Score=46.40 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=89.1
Q ss_pred hhhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.| ..+.+|++....+.+++|++.|..|+.- .+| ...++|+...
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~------~ed--------a~r~~~~~l~ 144 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS------AED--------ATRTDIDFLI 144 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE------Eee--------cCCCCHHHHH
Confidence 578889887776333 2267899999999999999999877522 122 1357888888
Q ss_pred HHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe---
Q 029526 72 EFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF--- 143 (192)
Q Consensus 72 ~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI--- 143 (192)
+++++ .|+|.+.++ ..=|.- .|.-=.++++.|++.. ++||-+|+ ..|+.......|+..|+.-|
T Consensus 145 ~~~~~~~~~g~~~i~l~--DT~G~~---~P~~v~~li~~l~~~~---~~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s 216 (363)
T TIGR02090 145 KVFKRAEEAGADRINIA--DTVGVL---TPQKMEELIKKLKENV---KLPISVHCHNDFGLATANSIAGVKAGAEQVHVT 216 (363)
T ss_pred HHHHHHHhCCCCEEEEe--CCCCcc---CHHHHHHHHHHHhccc---CceEEEEecCCCChHHHHHHHHHHCCCCEEEEE
Confidence 87654 689976654 222322 2433345556666555 57777766 56777788888999998776
Q ss_pred ---------ecchHHHHHHHHH
Q 029526 144 ---------NVNTEVRKAYMDS 156 (192)
Q Consensus 144 ---------Ni~T~l~~a~~~~ 156 (192)
|..|+....++..
T Consensus 217 ~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 217 VNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred eeccccccccccHHHHHHHHHH
Confidence 4556655555544
No 88
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.95 E-value=0.13 Score=46.52 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=85.1
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|.- ..+|+++..++.+++|+..|..|+- +.+| ...++|+...
T Consensus 80 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~------~~ed--------~~r~~~~~l~ 145 (365)
T TIGR02660 80 AAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV------GGED--------ASRADPDFLV 145 (365)
T ss_pred HHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE------eecC--------CCCCCHHHHH
Confidence 57888988877665543 4688999999999999999987662 1233 2357898888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
++++ +.|+|.+-++ ..-|.- .|.-=.++++.+++.+ ++||-+|+ ..|+.-...-.|++.|+..|.
T Consensus 146 ~~~~~~~~~Ga~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~---~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd 215 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFA--DTVGIL---DPFSTYELVRALRQAV---DLPLEMHAHNDLGMATANTLAAVRAGATHVN 215 (365)
T ss_pred HHHHHHHHcCcCEEEEc--ccCCCC---CHHHHHHHHHHHHHhc---CCeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 8865 4789876543 343432 2433345566676665 58888776 467778888889999998875
No 89
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.87 E-value=0.29 Score=43.54 Aligned_cols=130 Identities=9% Similarity=0.094 Sum_probs=86.9
Q ss_pred hhhhcCCCEeEeeCCCC-----------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCH
Q 029526 2 EAIVLGFDSLMVDGSHL-----------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-----------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
++.++||+-|=+-...- .+..+.+.+.++++-.++. +++|-.=+.- |.++. .+.
T Consensus 83 ~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--g~~~~----------~~~ 150 (312)
T PRK10550 83 RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--GWDSG----------ERK 150 (312)
T ss_pred HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--CCCCc----------hHH
Confidence 34556776666554442 3667778888887777652 2444443321 11110 011
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecc
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~ 146 (192)
.+..+-+++.|+|+|.|.-+|....|.+ |.+|++.+++|++.+ ++|++.=|+--.+ ++..+++ ..|+.=|=|+
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g--~~~~~~~i~~ik~~~---~iPVi~nGdI~t~-~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRA--EHINWQAIGEIRQRL---TIPVIANGEIWDW-QSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCC--CcccHHHHHHHHhhc---CCcEEEeCCcCCH-HHHHHHHhccCCCEEEEc
Confidence 2444447789999999998888888874 667999999999988 6999999976555 5677766 5778888888
Q ss_pred hHH
Q 029526 147 TEV 149 (192)
Q Consensus 147 T~l 149 (192)
..+
T Consensus 225 Rg~ 227 (312)
T PRK10550 225 RGA 227 (312)
T ss_pred HHh
Confidence 765
No 90
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.87 E-value=0.26 Score=44.17 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=80.3
Q ss_pred ChhhhcCCCEeEeeCCC--------C------------CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCcccc
Q 029526 1 MEAIVLGFDSLMVDGSH--------L------------PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~--------l------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~ 59 (192)
++|.++||+-|-+-+.| - ++|.-.+...|+++-.++. +..|-. ++.. +|...
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~v---Ris~-~d~~~--- 221 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFV---RISA-SDYHP--- 221 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEE---Eecc-cccCC---
Confidence 36889999999998764 1 5788899999999888864 111111 2211 11111
Q ss_pred ccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029526 60 YEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
.- -+++++.++ +++.|+|+|-|+.|+..-.-....+..+++..++|++.+ ++|+..=|+- .+.++..+++
T Consensus 222 --~G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~G~i-~~~~~a~~~l 294 (337)
T PRK13523 222 --GG-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAVGLI-TSGAQAEEIL 294 (337)
T ss_pred --CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEeCCC-CCHHHHHHHH
Confidence 01 236666655 456899999999997320000001334678889999887 6997766654 3467788998
Q ss_pred hcCC
Q 029526 137 ERGV 140 (192)
Q Consensus 137 ~~Gi 140 (192)
+.|.
T Consensus 295 ~~g~ 298 (337)
T PRK13523 295 QNNR 298 (337)
T ss_pred HcCC
Confidence 8874
No 91
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.83 E-value=0.12 Score=48.57 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=79.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~Tg 78 (192)
+|+++|.+.|-+=-|.-+ +++.++.+++|+..|..|++-+....+. ..+++...++ +.+.|
T Consensus 103 ~A~~~Gvd~irif~~lnd----~~n~~~~i~~ak~~G~~v~~~i~~t~~p------------~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 103 KVAEYGLDIIRIFDALND----IRNLEKSIEVAKKHGAHVQGAISYTVSP------------VHTLEYYLEFARELVDMG 166 (467)
T ss_pred HHHHCCcCEEEEEEeCCH----HHHHHHHHHHHHHCCCEEEEEEEeccCC------------CCCHHHHHHHHHHHHHcC
Confidence 578889987764433333 3445666799999999888666443221 1234444444 34579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 167 ad~I~i~--Dt~G~l---~P~~v~~Lv~~lk~~~---~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 167 VDSICIK--DMAGLL---TPKRAYELVKALKKKF---GVPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred CCEEEEC--CccCCc---CHHHHHHHHHHHHHhc---CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9987764 333332 2444456777788776 57777665 6899999999999999988754
No 92
>PRK07695 transcriptional regulator TenI; Provisional
Probab=95.79 E-value=0.83 Score=37.43 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeE------EEecc----ccccCCCCC--------cccccccc
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLV------EAELG----RLSGTEDGL--------TVEDYEAK 63 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~V------EaElG----~i~g~e~~~--------~~~~~~~~ 63 (192)
+++.|-+.|=+---+++.++-.+..+++.+.++.. -+.| -.++| |++. .+.. ...-....
T Consensus 23 ~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~~-~~~~~~~~r~~~~~~~ig~s 101 (201)
T PRK07695 23 QIHSEVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLGY-RSFSVRSVREKFPYLHVGYS 101 (201)
T ss_pred HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeCc-ccCCHHHHHHhCCCCEEEEe
Confidence 57788888888888889888888888887765531 0111 11111 2221 1110 00000112
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..+++++.+ ..+.|+|.+. +|.++..-. ++.+.++++.++++.+.+ ++|++.=||- ..+++..+++.|+.=
T Consensus 102 ~~s~e~a~~-a~~~Gadyi~--~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI--~~~~~~~~~~~Ga~g 173 (201)
T PRK07695 102 VHSLEEAIQ-AEKNGADYVV--YGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI--TPENTRDVLAAGVSG 173 (201)
T ss_pred CCCHHHHHH-HHHcCCCEEE--ECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC--CHHHHHHHHHcCCCE
Confidence 357888877 5577999985 454432211 112446889999998877 6999988855 788899999999999
Q ss_pred eecchHHH
Q 029526 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
|-+.+.+.
T Consensus 174 vav~s~i~ 181 (201)
T PRK07695 174 IAVMSGIF 181 (201)
T ss_pred EEEEHHHh
Confidence 99999985
No 93
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=95.78 E-value=0.16 Score=44.56 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=95.7
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH----
Q 029526 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---- 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---- 67 (192)
+|+++|++.|.+=.|.- +.+|.+++.++++++|+..|..|+.=+ ||.. -+++
T Consensus 82 ~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~------ed~~--------r~d~~~~v 147 (279)
T cd07947 82 LVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL------EDIT--------RADIYGFV 147 (279)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE------Eccc--------CCCcccch
Confidence 68899999998876654 468889999999999999998887554 3321 1333
Q ss_pred -HHHHHHhh---hhCCcE---EEEecCcCC----CCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHH
Q 029526 68 -NQAEEFID---ETDIDA---LAVCIGNVH----GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKG 134 (192)
Q Consensus 68 -eea~~Fv~---~TgvD~---LAvaiGt~H----G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~ 134 (192)
+-++++++ +.|+|+ |+=.+|..+ +.| |.-=.++++.+++.++..++||-+| =..|+.-...-.
T Consensus 148 ~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~----p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~la 223 (279)
T cd07947 148 LPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASL----PRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVA 223 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccc----hHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHH
Confidence 24555554 379993 455566553 011 1111356667776642112345555 567888889999
Q ss_pred HHhcCCeEe------------ecchHHHHHHHHHh-c-CCCCChHHHH
Q 029526 135 CIERGVRKF------------NVNTEVRKAYMDSL-S-RPKSDLIHLM 168 (192)
Q Consensus 135 ~i~~Gi~KI------------Ni~T~l~~a~~~~~-~-~~~~~~~~~~ 168 (192)
|++.|+..| |..|+....+...+ . +++.|+..+.
T Consensus 224 A~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~~g~~t~idl~~l~ 271 (279)
T cd07947 224 AWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQLKGNFDGMNLEVIT 271 (279)
T ss_pred HHHhCCCEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 999999887 56677776666655 2 2334555443
No 94
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.78 E-value=0.12 Score=47.15 Aligned_cols=130 Identities=13% Similarity=0.198 Sum_probs=79.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHH--HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKD--NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~ee--Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|-+-|.+++..-+-.- +-.....++++.++.++.| |.| ...+++.|++.++ +|+
T Consensus 149 ~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipV------IaG------------~V~t~e~A~~l~~-aGA 209 (368)
T PRK08649 149 TVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPV------IVG------------GCVTYTTALHLMR-TGA 209 (368)
T ss_pred HHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCE------EEe------------CCCCHHHHHHHHH-cCC
Confidence 356788888888874321110 0001122455556667776 221 1367889999885 999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhc-------c---CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSS-------K---KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~-------~---~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|.+-+++|--.+.-....-...+..+..|.+..+ + .++|++--||-..+.+ +.+|+.+|-.=+.++|.|
T Consensus 210 D~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~d-iakAlalGAd~Vm~Gs~f 288 (368)
T PRK08649 210 AGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGD-IAKAIACGADAVMLGSPL 288 (368)
T ss_pred CEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHH-HHHHHHcCCCeecccchh
Confidence 9998877642111110001122334444444321 1 1599999999887755 999999999999999998
Q ss_pred HH
Q 029526 150 RK 151 (192)
Q Consensus 150 ~~ 151 (192)
..
T Consensus 289 a~ 290 (368)
T PRK08649 289 AR 290 (368)
T ss_pred cc
Confidence 54
No 95
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=95.78 E-value=0.026 Score=52.26 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=77.1
Q ss_pred hhhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhCCCeEE-EeccccccCCC----CCccccccccCCCHH
Q 029526 2 EAIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSKGMLVE-AELGRLSGTED----GLTVEDYEAKLTDVN 68 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~gv~VE-aElG~i~g~e~----~~~~~~~~~~~T~pe 68 (192)
..+++||+=+++|.|.- |.+.=.++|.++.++|-+.--.-. ..+..|=|.|- |......+-..|+|+
T Consensus 115 ayv~AGF~KIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~pvYvIGTEVPvPGGa~e~~~~l~vTs~e 194 (424)
T PF08013_consen 115 AYVEAGFTKIHLDCSMDCAGDPKPLPDETVAERAARLCEVAEEAAKRRGGPPPVYVIGTEVPVPGGAQEALDGLAVTSPE 194 (424)
T ss_dssp HHHCTT--EEEE---C--CTS-SC--HHHHHHHHHHHHHHHHCCS-HHHHHH-EEEEE-SS-----------------HH
T ss_pred HHHHcCCceEeecCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCccCCCCcccccccCCCCCCHH
Confidence 36789999999999964 566677888888888886510000 02333323332 111111123479999
Q ss_pred HHHHHhhh-------hCCc-------EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc-EEeecCCC--CCHHH
Q 029526 69 QAEEFIDE-------TDID-------ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL-LVLHGASG--LSAEL 131 (192)
Q Consensus 69 ea~~Fv~~-------TgvD-------~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP-LVlHGgSG--~~~e~ 131 (192)
.+++|++. -|.+ .|-|--|+--|-- +.-..|++.-+++.+.++ +-| ||+-+=|+ .++..
T Consensus 195 a~~~Ti~~h~~aF~~~GL~~aw~rvi~~VVQpGVEf~~~--~V~~Y~~~~A~~Ls~~i~--~~p~lvfEaHSTDYQt~~a 270 (424)
T PF08013_consen 195 AAEATIETHRKAFEAAGLEDAWPRVIALVVQPGVEFDHE--NVIDYDPEKARDLSAMIK--KYPGLVFEAHSTDYQTPQA 270 (424)
T ss_dssp HHHHHHHHHHHHHHCCT-HHHHTTEEEEE---S-EEETT--EEE---CCCCCHHHHHHC--TSTT-EEEES--TT--HHH
T ss_pred HHHHHHHHHHHHHHHcCcHHhHhheEEEEecCCceeCCC--ceeecCHHHHHHHHHHHH--hCCceEEeecccCcCCHHH
Confidence 99999864 3442 3555555532210 001222333456666665 577 88766555 68888
Q ss_pred HHHHHhcCCeEeecchHHHHHHHHHh
Q 029526 132 IKGCIERGVRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 132 ~~~~i~~Gi~KINi~T~l~~a~~~~~ 157 (192)
+++.++.|+.-.||+-.|-.|+++++
T Consensus 271 l~~lV~dgfaiLKVGPaLTfalREAl 296 (424)
T PF08013_consen 271 LRELVEDGFAILKVGPALTFALREAL 296 (424)
T ss_dssp HHHHHHTTEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHhcCceeeeccchhhHHHHHHH
Confidence 99999999999999999988888776
No 96
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.74 E-value=0.14 Score=44.01 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=85.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHH--hCCCeEEEeccccccCCCCCccccc-cccCCCHHHHHHHhhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAH--SKGMLVEAELGRLSGTEDGLTVEDY-EAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah--~~gv~VEaElG~i~g~e~~~~~~~~-~~~~T~peea~~Fv~~Tg 78 (192)
+.+.+|++-|.+..+.++ |....+++++... +.-++|..=.|..+... .....+ +..-.+|.+..+.+++-|
T Consensus 91 ~l~~~G~~~vvigs~~~~---~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~--v~~~gw~~~~~~~~~e~~~~~~~~g 165 (258)
T PRK01033 91 KIFSLGVEKVSINTAALE---DPDLITEAAERFGSQSVVVSIDVKKNLGGKFD--VYTHNGTKKLKKDPLELAKEYEALG 165 (258)
T ss_pred HHHHCCCCEEEEChHHhc---CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEE--EEEcCCeecCCCCHHHHHHHHHHcC
Confidence 356789998888655443 3334444444332 12244544434110000 000000 112356788888888999
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecchHHH
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~T~l~ 150 (192)
++.+-+-==+.=|.|.+ | |++.++++.+.+ ++|+..-||-+.+++ ++++. +.|+..+=+++.+.
T Consensus 166 ~~~ii~~~i~~~G~~~G--~--d~~~i~~~~~~~---~ipvIasGGv~s~eD-~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 166 AGEILLNSIDRDGTMKG--Y--DLELLKSFRNAL---KIPLIALGGAGSLDD-IVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred CCEEEEEccCCCCCcCC--C--CHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHHHHCCCCEEEEcceee
Confidence 99877643233466653 4 999999999987 699999999886655 78887 79999999998885
No 97
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.72 E-value=0.36 Score=43.79 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=81.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|+..+ +.|+|.+.|+- ||.-.-......++.|.+|++.+.. ++|+..-||--.+.| +.+++.+|..=|=
T Consensus 230 ~~~~dA~~a~-~~G~d~I~vsn---hGGr~ld~~~~~~~~l~~i~~a~~~-~i~vi~dGGIr~g~D-i~kaLalGA~~V~ 303 (351)
T cd04737 230 QSPEDADVAI-NAGADGIWVSN---HGGRQLDGGPASFDSLPEIAEAVNH-RVPIIFDSGVRRGEH-VFKALASGADAVA 303 (351)
T ss_pred CCHHHHHHHH-HcCCCEEEEeC---CCCccCCCCchHHHHHHHHHHHhCC-CCeEEEECCCCCHHH-HHHHHHcCCCEEE
Confidence 6888887644 78999999882 5532111122457889999888732 499999999877665 8888889999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++.... -..-.....+.+++.++..|.++|+.
T Consensus 304 iGr~~l~~la~~-------G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 304 VGRPVLYGLALG-------GAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred ECHHHHHHHhhc-------hHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999998876321 01224455677888888999999864
No 98
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.71 E-value=0.36 Score=39.37 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+.+|-+-|+..++. .++++.++.+|+.+.. | .++|+|+.+-. +-|+|.
T Consensus 71 ~a~~~Ga~~i~~p~~~----------~~~~~~~~~~~~~~i~------g-------------v~t~~e~~~A~-~~Gad~ 120 (190)
T cd00452 71 AAIAAGAQFIVSPGLD----------PEVVKAANRAGIPLLP------G-------------VATPTEIMQAL-ELGADI 120 (190)
T ss_pred HHHHcCCCEEEcCCCC----------HHHHHHHHHcCCcEEC------C-------------cCCHHHHHHHH-HCCCCE
Confidence 4778888888766554 3688888888764432 1 34788888865 679999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.+ |+. .+ +-.+.++.+++... ++|++-=| |++.+++....+.|+.=|=+++.+.
T Consensus 121 i~~--------~p~-~~-~g~~~~~~l~~~~~--~~p~~a~G--GI~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 121 VKL--------FPA-EA-VGPAYIKALKGPFP--QVRFMPTG--GVSLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EEE--------cCC-cc-cCHHHHHHHHhhCC--CCeEEEeC--CCCHHHHHHHHHCCCEEEEEchhcc
Confidence 996 443 23 47888888887653 48999999 6688999999999999999988886
No 99
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.70 E-value=0.062 Score=47.88 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=58.8
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH----HHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcCC
Q 029526 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD----LLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~----~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~Gi 140 (192)
+++++.+.++.-+.|++++-++..+..-.+. ..-||+ .|+.|.+.+ ++|+++.+ |+|.+.+..+++.+.|+
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~-~~~df~~~~~~i~~l~~~~---~vPVivK~~g~g~s~~~a~~l~~~Gv 203 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPE-GDRDFRGWLERIEELVKAL---SVPVIVKEVGFGISRETAKRLADAGV 203 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCC-CCcCHHHHHHHHHHHHHhc---CCCEEEEecCCCCCHHHHHHHHHcCC
Confidence 7899999999889999999886544322221 233674 455555554 79999997 78899999999999999
Q ss_pred eEeecch
Q 029526 141 RKFNVNT 147 (192)
Q Consensus 141 ~KINi~T 147 (192)
.=|.++.
T Consensus 204 d~I~vsG 210 (326)
T cd02811 204 KAIDVAG 210 (326)
T ss_pred CEEEECC
Confidence 8888643
No 100
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=95.63 E-value=0.27 Score=42.99 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=98.5
Q ss_pred hhhhcCCCEeEeeCCC----------CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSH----------LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|. ...+|.+...++++++|+..|..|..=+...+ ...-++|+...
T Consensus 82 ~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~-----------~~~r~~~~~~~ 150 (280)
T cd07945 82 WIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWS-----------NGMRDSPDYVF 150 (280)
T ss_pred HHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC-----------CCCcCCHHHHH
Confidence 4777899998888755 35689999999999999999987765543321 01246788777
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee--
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN-- 144 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN-- 144 (192)
++++ +.|+|.+.++ -.=|.. .|.-=.++++.+++... ++||-+|+ ..|+.-...-.|++.|+.-|+
T Consensus 151 ~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~l~~~l~~~~~--~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s 223 (280)
T cd07945 151 QLVDFLSDLPIKRIMLP--DTLGIL---SPFETYTYISDMVKRYP--NLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTT 223 (280)
T ss_pred HHHHHHHHcCCCEEEec--CCCCCC---CHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 7765 4689976543 333332 24444566677776553 36666554 678888899999999999885
Q ss_pred ----------cchHHHHHHHHH-hc-CCCCChHHHHH
Q 029526 145 ----------VNTEVRKAYMDS-LS-RPKSDLIHLMA 169 (192)
Q Consensus 145 ----------i~T~l~~a~~~~-~~-~~~~~~~~~~~ 169 (192)
..|+-...+... .. +.+.|+..+..
T Consensus 224 ~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~ 260 (280)
T cd07945 224 VNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNR 260 (280)
T ss_pred cccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHH
Confidence 456655555532 22 22345554433
No 101
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.61 E-value=0.56 Score=39.69 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=94.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCcccc-----c----
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTVED-----Y---- 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~~~-----~---- 60 (192)
+|++.|-+.|=|=--..+-++=.+..+++.++|+++|+.+= .++| |+| .+|...... .
T Consensus 29 ~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGVHlG-q~D~~~~~ar~~~~~~~iI 107 (211)
T COG0352 29 AALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGADGVHLG-QDDMPLAEARELLGPGLII 107 (211)
T ss_pred HHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEEEcC-CcccchHHHHHhcCCCCEE
Confidence 57788877766644444444448899999999999987642 1333 343 232211100 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+.+|+++ .++-|+|.++ +|.+-.--+ ++.|.+-++.|+.+++.. .+|+|-=| |+..+.+...++.|
T Consensus 108 G~S~h~~eea~~-A~~~g~DYv~--~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIG--Gi~~~nv~~v~~~G 179 (211)
T COG0352 108 GLSTHDLEEALE-AEELGADYVG--LGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIG--GINLENVPEVLEAG 179 (211)
T ss_pred EeecCCHHHHHH-HHhcCCCEEE--ECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEc--CCCHHHHHHHHHhC
Confidence 001238888888 6677899987 566643322 224678899999999887 59999999 67789999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|=+-+.+.
T Consensus 180 a~gVAvvsai~ 190 (211)
T COG0352 180 ADGVAVVSAIT 190 (211)
T ss_pred CCeEEehhHhh
Confidence 99777665553
No 102
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.55 E-value=0.081 Score=45.01 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=61.6
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|.||.+..++.+..|+|.|-+.==+ +.. + ...+++.+++|.+.+ .+|+-+=||-.. .|++++.+..|+.|
T Consensus 30 ~~~dp~~~a~~~~~~g~~~l~ivDLd--~~~-g--~~~n~~~i~~i~~~~---~~pv~vgGGirs-~edv~~~l~~Ga~k 100 (241)
T PRK14024 30 SYGSPLDAALAWQRDGAEWIHLVDLD--AAF-G--RGSNRELLAEVVGKL---DVKVELSGGIRD-DESLEAALATGCAR 100 (241)
T ss_pred ECCCHHHHHHHHHHCCCCEEEEEecc--ccC-C--CCccHHHHHHHHHHc---CCCEEEcCCCCC-HHHHHHHHHCCCCE
Confidence 46799998888888999888764211 221 1 334789999999888 699999998764 46799999999999
Q ss_pred eecchHHH
Q 029526 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
++++|.+.
T Consensus 101 vviGs~~l 108 (241)
T PRK14024 101 VNIGTAAL 108 (241)
T ss_pred EEECchHh
Confidence 99999874
No 103
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.53 E-value=0.48 Score=42.19 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC--------CCC-------CCCCC-----HHHHHHHHhhhccCCccEEeecC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY--------PSS-------GPNLK-----LDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------~~~-------~p~ld-----~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
+++++|+. +++.|||.+-|+ | ||.. ... .+..+ .+.|.++++.+. ++|+..=||
T Consensus 190 ~s~~~a~~-l~~~Gvd~I~vs-G--~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGG 263 (326)
T cd02811 190 ISRETAKR-LADAGVKAIDVA-G--AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGG 263 (326)
T ss_pred CCHHHHHH-HHHcCCCEEEEC-C--CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECC
Confidence 56777876 568999999986 3 3441 110 01122 245556665542 599999998
Q ss_pred CCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 125 SGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 125 SG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
-..+ .++.+++.+|..=+=+++.+..+.... .+.+....+.+++.++..|.+.|+.
T Consensus 264 Ir~~-~dv~kal~lGAd~V~i~~~~L~~~~~g--------~~~~~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 264 IRNG-LDIAKALALGADLVGMAGPFLKAALEG--------EEAVIETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred CCCH-HHHHHHHHhCCCEEEEcHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7744 669999999999999999998777541 2234456678888888999999875
No 104
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.49 E-value=0.25 Score=46.50 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=86.9
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
++.|-+.|-+|.++-. .+|+. +.++.-++. ++. -|+| .-.++++|+.-+ +.|+|+
T Consensus 236 v~aGvd~i~~D~a~~~-~~~~~---~~i~~ik~~~p~~~------v~ag------------nv~t~~~a~~l~-~aGad~ 292 (479)
T PRK07807 236 LEAGVDVLVVDTAHGH-QEKML---EALRAVRALDPGVP------IVAG------------NVVTAEGTRDLV-EAGADI 292 (479)
T ss_pred HHhCCCEEEEeccCCc-cHHHH---HHHHHHHHHCCCCe------EEee------------ccCCHHHHHHHH-HcCCCE
Confidence 5678999999999988 33333 333333332 222 2222 235677887765 689999
Q ss_pred EEEecCc----CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGN----VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt----~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|.||+ .=..|.+ ...-+|..+.++.+..+..++|++--||-..| .++.+|+.+|..=+-+++-|.
T Consensus 293 v~vgig~gsictt~~~~~-~~~p~~~av~~~~~~~~~~~~~via~ggi~~~-~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 293 VKVGVGPGAMCTTRMMTG-VGRPQFSAVLECAAAARELGAHVWADGGVRHP-RDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred EEECccCCcccccccccC-CchhHHHHHHHHHHHHHhcCCcEEecCCCCCH-HHHHHHHHcCCCeeeccHhhc
Confidence 9999998 5555654 23348888888888665568999999999888 459999999999999998773
No 105
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.45 E-value=0.2 Score=45.74 Aligned_cols=130 Identities=14% Similarity=0.132 Sum_probs=80.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHH--HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDN--ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeN--i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.++++|-+-|.+++..-+-+-+ =..-..+.++.+..+++|=+ | .-.++++|++.++ +|+
T Consensus 150 ~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-----G-------------~V~t~e~A~~~~~-aGa 210 (369)
T TIGR01304 150 IVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-----G-------------GVNDYTTALHLMR-TGA 210 (369)
T ss_pred HHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-----e-------------CCCCHHHHHHHHH-cCC
Confidence 4678999999988643110000 00022456666677777722 1 1366889999886 999
Q ss_pred cEEEEecCcCCCCCCCCCCCC---CHHHHHHHHhhh----ccC---CccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNL---KLDLLKDLHALS----SKK---GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~l---d~~~L~~I~~~~----~~~---~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|.+- +|.--+.+....-.+ ....+.++.+.. ++. .+|+.--||-..+. ++.+|+.+|..=+-++|.+
T Consensus 211 DgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~-di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 211 AGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSG-DLVKAIACGADAVVLGSPL 287 (369)
T ss_pred CEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHH-HHHHHHHcCCCEeeeHHHH
Confidence 9987 444333332210111 223444443321 111 39999999998875 5999999999999999999
Q ss_pred HHHH
Q 029526 150 RKAY 153 (192)
Q Consensus 150 ~~a~ 153 (192)
..+-
T Consensus 288 a~a~ 291 (369)
T TIGR01304 288 ARAA 291 (369)
T ss_pred Hhhh
Confidence 6554
No 106
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.45 E-value=0.44 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=81.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEec-----cccccCCCCCccccccccCCCHHHHHHHh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAEL-----GRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaEl-----G~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
+++..|++-||+-.+.+ +|-...+++++..+.-. +++-.=. +.|- .... ..... -++.+-.+.+
T Consensus 88 ~~l~~G~~~v~ig~~~~---~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~-~~~~----~~~~~-~~~~~~~~~l 158 (243)
T cd04731 88 RLLRAGADKVSINSAAV---ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVY-THGG----RKPTG-LDAVEWAKEV 158 (243)
T ss_pred HHHHcCCceEEECchhh---hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEE-EcCC----ceecC-CCHHHHHHHH
Confidence 46778999999975544 45566666666554212 3333221 2221 0000 00111 1223333446
Q ss_pred hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchHHH
Q 029526 75 DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
++-|+|.+.+.-=+..|.. +..+++.++++.+.+ ++|+..-||-..+ +++.++.+. |+.-+=+++.+.
T Consensus 159 ~~~G~d~i~v~~i~~~g~~----~g~~~~~i~~i~~~~---~~pvia~GGi~~~-~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 159 EELGAGEILLTSMDRDGTK----KGYDLELIRAVSSAV---NIPVIASGGAGKP-EHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred HHCCCCEEEEeccCCCCCC----CCCCHHHHHHHHhhC---CCCEEEeCCCCCH-HHHHHHHHhCCCCEEEEeHHHH
Confidence 6789999888643333332 445899999999887 6999999987755 458888886 899999988874
No 107
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.43 E-value=0.17 Score=42.07 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=64.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.+..+.+++.|+|.|-|. ...+.|.+ ...+++.+++|.+.+ ++|+..=||-. +.++.+++++.|..+|
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~--dl~~~~~~--~~~~~~~i~~i~~~~---~~pv~~~GgI~-~~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVV--DLDGAKGG--EPVNLELIEEIVKAV---GIPVQVGGGIR-SLEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--CCCccccC--CCCCHHHHHHHHHhc---CCCEEEeCCcC-CHHHHHHHHHcCCCEE
Confidence 4689888888888999999998 44444542 456899999999887 69998877744 3577999999999999
Q ss_pred ecchHHHH
Q 029526 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
-++|.+..
T Consensus 100 vigs~~l~ 107 (234)
T cd04732 100 IIGTAAVK 107 (234)
T ss_pred EECchHHh
Confidence 99998743
No 108
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.43 E-value=0.32 Score=42.31 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCC--
Q 029526 15 GSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHG-- 91 (192)
Q Consensus 15 ~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-- 91 (192)
+....+..|.+...++++..++. +++|=.=+.. ..++..+..+.+++.|+|.|.++- |.||
T Consensus 133 ~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~---------------~~~~~~~~a~~l~~~G~d~i~v~n-t~~~~~ 196 (300)
T TIGR01037 133 GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP---------------NVTDITEIAKAAEEAGADGLTLIN-TLRGMK 196 (300)
T ss_pred CCccccccCHHHHHHHHHHHHHhcCCCEEEECCC---------------ChhhHHHHHHHHHHcCCCEEEEEc-cCCccc
Confidence 33444556667777777777753 4444333320 123344555667889999998753 3333
Q ss_pred ---------------CCCCCCCC---CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 92 ---------------KYPSSGPN---LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 92 ---------------~y~~~~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|.+ |. +.++.+.+|++.+ ++|+..=||--.+ ++..+++..|..=|=++|.+.
T Consensus 197 ~~~~~~~~~~~~~~gg~sg--~~~~~~~l~~v~~i~~~~---~ipvi~~GGI~s~-~da~~~l~~GAd~V~igr~~l 267 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSG--PAIKPIALRMVYDVYKMV---DIPIIGVGGITSF-EDALEFLMAGASAVQVGTAVY 267 (300)
T ss_pred cccccCceeeCCCCccccc--hhhhHHHHHHHHHHHhcC---CCCEEEECCCCCH-HHHHHHHHcCCCceeecHHHh
Confidence 3332 22 3457778888777 6999988876655 568888889988888888764
No 109
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.36 E-value=0.22 Score=41.62 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=80.3
Q ss_pred hhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029526 4 IVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 4 i~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
...|.+.+.+=.|.- +.++.+...++++++|+.+|..| .++ .++ ...++|++..+|
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-----~~~-~~~--------~~~~~~~~~~~~ 142 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-----AFG-CED--------ASRTDPEELLEL 142 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-----EEE-ETT--------TGGSSHHHHHHH
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-----EeC-ccc--------cccccHHHHHHH
Confidence 347777766544443 46889999999999999999999 332 122 135788888888
Q ss_pred hhh---hCCcEEEEe--cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029526 74 IDE---TDIDALAVC--IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 74 v~~---TgvD~LAva--iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+++ .|+|.+.++ +|.. .|.-=.++++.|++... ++||-+| -..|+.-...-.|++.|+.-|..
T Consensus 143 ~~~~~~~g~~~i~l~Dt~G~~-------~P~~v~~lv~~~~~~~~--~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 143 AEALAEAGADIIYLADTVGIM-------TPEDVAELVRALREALP--DIPLGFHAHNDLGLAVANALAALEAGADRIDG 212 (237)
T ss_dssp HHHHHHHT-SEEEEEETTS-S--------HHHHHHHHHHHHHHST--TSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHcCCeEEEeeCccCCc-------CHHHHHHHHHHHHHhcc--CCeEEEEecCCccchhHHHHHHHHcCCCEEEc
Confidence 765 599988765 4433 14333466777887764 2666655 56788888899999999999754
No 110
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.32 E-value=0.3 Score=42.03 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=92.5
Q ss_pred hhhhcC----CCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH
Q 029526 2 EAIVLG----FDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~G----FtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
+|+++| .+.|-+=.|.- +-++|+...++++++|++.|..|. ++ .++ ...++|
T Consensus 77 ~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~----~~~--------~~~~~~ 142 (268)
T cd07940 77 AAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FS----AED--------ATRTDL 142 (268)
T ss_pred HHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--Ee----eec--------CCCCCH
Confidence 466777 88777654533 448999999999999999997666 22 122 134788
Q ss_pred HHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeE
Q 029526 68 NQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRK 142 (192)
Q Consensus 68 eea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~K 142 (192)
+...+++++ .|+|.+.++ -.=|.- .|.-=.++++.|++.....++||-+|+= .|+.-.....|++.|+.-
T Consensus 143 ~~~~~~~~~~~~~G~~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~ 217 (268)
T cd07940 143 DFLIEVVEAAIEAGATTINIP--DTVGYL---TPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQ 217 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCC---CHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCE
Confidence 887777654 588876553 222221 2444456677777766311278777764 577777888999999887
Q ss_pred e------------ecchHHHHHHHHHhc
Q 029526 143 F------------NVNTEVRKAYMDSLS 158 (192)
Q Consensus 143 I------------Ni~T~l~~a~~~~~~ 158 (192)
| |..|+....+.+...
T Consensus 218 iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 218 VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred EEEEeeccccccccccHHHHHHHHHhcc
Confidence 6 567777777776654
No 111
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=95.20 E-value=0.25 Score=47.58 Aligned_cols=120 Identities=16% Similarity=0.266 Sum_probs=80.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|+++|.+.+-+=-|.-+. +| .++.+++|+..|..|++-+.... +.+.+++...++++ +.|
T Consensus 99 ~a~~~Gvd~irif~~lnd~-~n---~~~~i~~ak~~G~~v~~~i~~t~------------~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDP-RN---LQAAIQAAKKHGAHAQGTISYTT------------SPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHCCCCEEEEEEecCcH-HH---HHHHHHHHHHcCCEEEEEEEecc------------CCCCCHHHHHHHHHHHHHcC
Confidence 5788898876543333333 44 56677899999998887654331 12467776666554 479
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+| =.+|+.-...-.|++.|+.-|..
T Consensus 163 ad~I~i~--Dt~G~~---~P~~v~~lv~~lk~~~---~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ 223 (582)
T TIGR01108 163 VDSICIK--DMAGIL---TPKAAYELVSALKKRF---GLPVHLHSHATTGMAEMALLKAIEAGADGIDT 223 (582)
T ss_pred CCEEEEC--CCCCCc---CHHHHHHHHHHHHHhC---CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9987764 333332 2444466677787776 4776665 57899999999999999988754
No 112
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.19 E-value=0.24 Score=42.46 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC
Q 029526 22 DNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK 101 (192)
Q Consensus 22 eNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld 101 (192)
.|-....++++.++..+++|-.=|--- . +. . +..+..+-+++.|+|.|.| |++|++ .|..+
T Consensus 118 ~dp~~l~~iv~av~~~~~PVsvKiR~~-~--~~---------~-~~~~~a~~l~~aGad~i~V-----d~~~~g-~~~a~ 178 (231)
T TIGR00736 118 KNKELLKEFLTKMKELNKPIFVKIRGN-C--IP---------L-DELIDALNLVDDGFDGIHV-----DAMYPG-KPYAD 178 (231)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEeCCC-C--Cc---------c-hHHHHHHHHHHcCCCEEEE-----eeCCCC-Cchhh
Confidence 355677788887776677665544321 0 00 0 1224444478999999977 888986 46689
Q ss_pred HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 102 LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 102 ~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++.+++|++.++ ++|+.--||--.. ++..+++.+|..=|-+++.+.
T Consensus 179 ~~~I~~i~~~~~--~ipIIgNGgI~s~-eda~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 179 MDLLKILSEEFN--DKIIIGNNSIDDI-ESAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred HHHHHHHHHhcC--CCcEEEECCcCCH-HHHHHHHHhCCCeEEEcHhhc
Confidence 999999999873 4999988876544 557777789999888887653
No 113
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.16 E-value=0.91 Score=43.96 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=78.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~~Tg 78 (192)
.|+++|.+.+-+=-+--+ +++.+..+++|+..|..+|+.+......++ +++- ..+-+.+.|
T Consensus 105 ~a~~~Gid~~rifd~lnd----~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~------------~~~~~~~~a~~l~~~G 168 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMND----PRNLETALKAVRKVGAHAQGTLSYTTSPVH------------TLQTWVDLAKQLEDMG 168 (593)
T ss_pred HHHhcCCCEEEEeeeCCc----HHHHHHHHHHHHHcCCeEEEEEEEeeCCcc------------CHHHHHHHHHHHHHcC
Confidence 477888886653323333 245667789999999999998876532211 2333 233345679
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-.|++.|+.-|..
T Consensus 169 ad~i~i~--Dt~G~l---~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ 229 (593)
T PRK14040 169 VDSLCIK--DMAGLL---KPYAAYELVSRIKKRV---DVPLHLHCHATTGLSTATLLKAIEAGIDGVDT 229 (593)
T ss_pred CCEEEEC--CCCCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCchHHHHHHHHHHcCCCEEEe
Confidence 9988875 222222 2444456667777766 57766654 7889999999999999988754
No 114
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.16 E-value=0.52 Score=42.11 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=86.0
Q ss_pred hhhhcCCCEeEeeCCC-----------CCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029526 2 EAIVLGFDSLMVDGSH-----------LPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----------l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
.+.++||+-|-+-.+. -.+..|.+.+.++++-.++ .+++|-.=+ +++-. +. .+.++
T Consensus 85 ~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKi-R~g~~-~~----------~t~~~ 152 (333)
T PRK11815 85 LAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKH-RIGID-DQ----------DSYEF 152 (333)
T ss_pred HHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEE-EeeeC-CC----------cCHHH
Confidence 3456788877665432 2356788888888888776 366666544 44321 11 12344
Q ss_pred HHHH---hhhhCCcEEEEecCcC-CCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 70 AEEF---IDETDIDALAVCIGNV-HGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 70 a~~F---v~~TgvD~LAvaiGt~-HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+.+| +++.|+|+|.|.-+|. +..|.+. .|..+++.++++++.+. ++|++.=||-..+ +++.++++ |+.
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~nGgI~s~-eda~~~l~-~aD 228 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEINGGIKTL-EEAKEHLQ-HVD 228 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEECCcCCH-HHHHHHHh-cCC
Confidence 4444 5578999999875553 3345431 25689999999988742 5999999987765 55777776 677
Q ss_pred EeecchHH
Q 029526 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
=|=+++.+
T Consensus 229 gVmIGRa~ 236 (333)
T PRK11815 229 GVMIGRAA 236 (333)
T ss_pred EEEEcHHH
Confidence 77777765
No 115
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.11 E-value=1.3 Score=38.26 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=80.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC-Cc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD-ID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg-vD 80 (192)
+|.++|.+.|.+= .+|+|| ..++.+.|+++|+. ++.+- +.-|+++..+.+.+... ..
T Consensus 110 ~~~~aGvdgviip--Dlp~ee----~~~~~~~~~~~gl~----~i~lv------------~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 110 KCKEVGVDGVLVA--DLPLEE----SGDLVEAAKKHGVK----PIFLV------------APNADDERLKQIAEKSQGFV 167 (256)
T ss_pred HHHHcCCCEEEEC--CCChHH----HHHHHHHHHHCCCc----EEEEE------------CCCCCHHHHHHHHHhCCCCE
Confidence 5778899887764 467754 56889999998863 23331 12366777778777653 33
Q ss_pred EEEEecCcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
+.+|+ .|..-. ...+ ..+.++++++.+ +.|+++ |-|+. .++++++++.|..=+=++|.+...+.
T Consensus 168 -y~vs~---~G~TG~-~~~~~~~~~~~i~~lr~~~---~~pi~v--gfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~ 235 (256)
T TIGR00262 168 -YLVSR---AGVTGA-RNRAASALNELVKRLKAYS---AKPVLV--GFGISKPEQVKQAIDAGADGVIVGSAIVKIIE 235 (256)
T ss_pred -EEEEC---CCCCCC-cccCChhHHHHHHHHHhhc---CCCEEE--eCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 23332 233321 1222 456667777665 689888 55786 89999999999999999999976553
No 116
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.09 E-value=0.9 Score=42.59 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=104.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
++++.|...|-+---.++.++-.+..+++.++|+.+|+.+=- ++| |++ .+|-..... .
T Consensus 315 ~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adGvHl~-~~d~~~~~~r~~~~~~~~i 393 (502)
T PLN02898 315 AAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADGVHLG-QSDMPVRLARSLLGPGKII 393 (502)
T ss_pred HHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCEEEeC-hHhcCHHHHHHhcCCCCEE
Confidence 678899999999888889999999999999999988764322 222 232 122100000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+++|+.+ ..+.|+|.+++ |.+.--. ++..|.+.++.++++.+.. ++|+|.=| |+..+.++++.+.|
T Consensus 394 G~S~h~~~e~~~-a~~~gadyi~~--gpif~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~aiG--GI~~~~~~~~~~~G 465 (502)
T PLN02898 394 GVSCKTPEQAEQ-AWKDGADYIGC--GGVFPTNTKANNKTIGLDGLREVCEAS---KLPVVAIG--GISASNAASVMESG 465 (502)
T ss_pred EEeCCCHHHHHH-HhhcCCCEEEE--CCeecCCCCCCCCCCCHHHHHHHHHcC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 111247788766 44679999874 3332111 1123567899999998776 69999999 67789999999999
Q ss_pred Ce---EeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 029526 140 VR---KFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKA 177 (192)
Q Consensus 140 i~---KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (192)
+. =|=+.+.+.. ..||....+...+.+.+
T Consensus 466 ~~~~~gvav~~~i~~---------~~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 466 APNLKGVAVVSALFD---------QEDVLKATRKLHAILTE 497 (502)
T ss_pred CCcCceEEEEeHHhc---------CCCHHHHHHHHHHHHHH
Confidence 88 7777777742 13565555544444443
No 117
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=95.09 E-value=1.3 Score=38.13 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=78.7
Q ss_pred hhhhcCCCE---eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHHHhh
Q 029526 2 EAIVLGFDS---LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEEFID 75 (192)
Q Consensus 2 ~ai~~GFtS---VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~Fv~ 75 (192)
+|++.|-+- +++.++ +..++..+..+++++.||++|+.+=.....-| .. .+..+ ++++ +.+-..
T Consensus 101 ~A~~~Gad~v~~~~~~g~-~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g-----~~---~e~~~-~~~~i~~a~~~a~ 170 (267)
T PRK07226 101 EAIKLGADAVSVHVNVGS-ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRG-----PG---IKNEY-DPEVVAHAARVAA 170 (267)
T ss_pred HHHHcCCCEEEEEEecCC-hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCC-----Cc---cCCCc-cHHHHHHHHHHHH
Confidence 688889653 334554 34677888999999999999988776432111 10 01122 3333 334445
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHH----HHHHHhcCCeEeecchHH
Q 029526 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AEL----IKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~----~~~~i~~Gi~KINi~T~l 149 (192)
+.|+|++-.+ |++ +++.|+++.+.. ++|++.=||.... .++ +..+++.|..=+-++..+
T Consensus 171 e~GAD~vKt~-------~~~-----~~~~l~~~~~~~---~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i 234 (267)
T PRK07226 171 ELGADIVKTN-------YTG-----DPESFREVVEGC---PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNV 234 (267)
T ss_pred HHCCCEEeeC-------CCC-----CHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhh
Confidence 7899999776 332 567788777655 6999999988864 344 444569999844444443
No 118
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.03 E-value=0.15 Score=45.98 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=58.6
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH----HHHHHHhhhccCCccEEeecC-CCCCHHHHHHHHhcCC
Q 029526 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD----LLKDLHALSSKKGVLLVLHGA-SGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~----~L~~I~~~~~~~~iPLVlHGg-SG~~~e~~~~~i~~Gi 140 (192)
+|+++.+.++.-+.|++++-++..+..-.+ ...-||+ .|++|++.+ ++|+++.+. .|++.+..+++.+.|+
T Consensus 136 ~~~~~~~~~~~~~adal~l~l~~~qe~~~p-~g~~~f~~~le~i~~i~~~~---~vPVivK~~g~g~s~~~a~~l~~~Gv 211 (352)
T PRK05437 136 GVEEAQRAVEMIEADALQIHLNPLQELVQP-EGDRDFRGWLDNIAEIVSAL---PVPVIVKEVGFGISKETAKRLADAGV 211 (352)
T ss_pred CHHHHHHHHHhcCCCcEEEeCccchhhcCC-CCcccHHHHHHHHHHHHHhh---CCCEEEEeCCCCCcHHHHHHHHHcCC
Confidence 589999999999999999998765544333 2334674 556666655 799999743 6889999999999999
Q ss_pred eEeec
Q 029526 141 RKFNV 145 (192)
Q Consensus 141 ~KINi 145 (192)
.=|-+
T Consensus 212 d~I~V 216 (352)
T PRK05437 212 KAIDV 216 (352)
T ss_pred CEEEE
Confidence 88887
No 119
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.01 E-value=0.23 Score=41.78 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+++++.|+|.|-+.==+.-| +. +..|++.+++|++.+ ++|+..=||-. +.+++++++..|+..+-
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~-~~---~~~~~~~i~~i~~~~---~~pv~~~GGI~-s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS-EG---RETMLDVVERVAEEV---FIPLTVGGGIR-SLEDARRLLRAGADKVS 98 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc-cc---CcccHHHHHHHHHhC---CCCEEEeCCCC-CHHHHHHHHHcCCceEE
Confidence 499999999999999977765333322 22 344899999999887 69999988887 45678999999999999
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 99 ig~~~~ 104 (243)
T cd04731 99 INSAAV 104 (243)
T ss_pred ECchhh
Confidence 999874
No 120
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.00 E-value=0.34 Score=40.71 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
|..+.++.+.+..|+|.+.+ |++|-.+.+. .+..-++.|+++++... ++|++.=| |+..+.++.+++.|+.=+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~--~~v~pg~~~~~~~~~~~~~i~~~~~~~~--~~~I~a~G--GI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLV--MSVEPGFGGQSFIPSMMDKVRALRKKYP--ELDIEVDG--GVGPSTIDKAAEAGANVI 199 (229)
T ss_pred CCHHHHHHHHhccCCCEEEE--EEEecCCCccccCHHHHHHHHHHHHhCC--CCcEEEeC--CCCHHHHHHHHHcCCCEE
Confidence 44455555554445999765 7777544431 23445667777776643 58999999 678999999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=++|.+.
T Consensus 200 vvgsai~ 206 (229)
T PLN02334 200 VAGSAVF 206 (229)
T ss_pred EEChHHh
Confidence 9998874
No 121
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.99 E-value=1.7 Score=37.63 Aligned_cols=149 Identities=19% Similarity=0.145 Sum_probs=92.9
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCC
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDI 79 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tgv 79 (192)
|.+.|.+.|.+=- ...++...++.+++|+..|..|..-+-.. ..++|+...++++ +.|+
T Consensus 91 a~~~gv~~iri~~----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a--------------~~~~~~~~~~~~~~~~~~g~ 152 (266)
T cd07944 91 ASGSVVDMIRVAF----HKHEFDEALPLIKAIKEKGYEVFFNLMAI--------------SGYSDEELLELLELVNEIKP 152 (266)
T ss_pred HhcCCcCEEEEec----ccccHHHHHHHHHHHHHCCCeEEEEEEee--------------cCCCHHHHHHHHHHHHhCCC
Confidence 5567777765532 12468888999999999998776543332 1256777666654 4688
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------ec
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------NV 145 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------Ni 145 (192)
|.+-++ -.=|.. .|.-=.++++.|++.++. ++||-+|+ .-|+.-.....|++.|+.-| |.
T Consensus 153 ~~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~~-~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~ 226 (266)
T cd07944 153 DVFYIV--DSFGSM---YPEDIKRIISLLRSNLDK-DIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNL 226 (266)
T ss_pred CEEEEe--cCCCCC---CHHHHHHHHHHHHHhcCC-CceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcH
Confidence 877654 222221 243334555666665521 27887776 45777788888999998776 56
Q ss_pred chHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 029526 146 NTEVRKAYMDSLSRPKSDLIHLMASAKEAM 175 (192)
Q Consensus 146 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (192)
.|+....+.+...+...|+..++..+.+-+
T Consensus 227 ~~E~~v~~l~~~~~~~~dl~~l~~~~~~~~ 256 (266)
T cd07944 227 PTELLLDYLNNKFGKKYNLEPVLELIDEYI 256 (266)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 777766666655334456666655444333
No 122
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=94.92 E-value=0.27 Score=40.88 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.=- -|.-.+ ...+++++++|.+.+ ++|+-.=||- .+.++++++...|+.+|-
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dl--d~~~~g--~~~~~~~i~~i~~~~---~~pv~~~GGI-~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDL--DGAKAG--KPVNLELIEAIVKAV---DIPVQVGGGI-RSLETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeC--CccccC--CcccHHHHHHHHHHC---CCCEEEcCCc-CCHHHHHHHHHcCCCEEE
Confidence 59999888888999999988752 222221 235899999999887 6999886655 355789999999999999
Q ss_pred cchHHHH
Q 029526 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 102 lg~~~l~ 108 (233)
T PRK00748 102 IGTAAVK 108 (233)
T ss_pred ECchHHh
Confidence 9998854
No 123
>PRK08999 hypothetical protein; Provisional
Probab=94.91 E-value=1.8 Score=37.57 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=90.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCccccc--------c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVEDY--------E 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~~--------~ 61 (192)
++++.|.+.|=+--..++.++-.+..+++.+.|+++|+.+=- ++| |+|. +|....... .
T Consensus 152 ~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~-~d~~~~~~r~~~~~~~ig 230 (312)
T PRK08999 152 RALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTS-AQLAALAARPLPAGRWVA 230 (312)
T ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcCh-hhcChHhhccCCCCCEEE
Confidence 578899999999888899999999999999999998876522 222 2321 111100000 0
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..--+.+++.+ ..+.|+|.+.+ |-+.-- -|++.|.+.++.|+++.+.+ ++|+|--| |+..+++..+.++|+
T Consensus 231 ~S~h~~~~~~~-a~~~~~dyi~~--gpvf~t~tk~~~~~~g~~~~~~~~~~~---~~Pv~AiG--GI~~~~~~~~~~~g~ 302 (312)
T PRK08999 231 ASCHDAEELAR-AQRLGVDFAVL--SPVQPTASHPGAAPLGWEGFAALIAGV---PLPVYALG--GLGPGDLEEAREHGA 302 (312)
T ss_pred EecCCHHHHHH-HHhcCCCEEEE--CCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHhCC
Confidence 01136677665 45679998764 444211 11123568899999998877 69999999 678999999999987
Q ss_pred eEee
Q 029526 141 RKFN 144 (192)
Q Consensus 141 ~KIN 144 (192)
.=|=
T Consensus 303 ~gva 306 (312)
T PRK08999 303 QGIA 306 (312)
T ss_pred CEEE
Confidence 6543
No 124
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.91 E-value=0.62 Score=40.56 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=83.4
Q ss_pred hhhcC-CCEeEeeCC-------CCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHH
Q 029526 3 AIVLG-FDSLMVDGS-------HLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF 73 (192)
Q Consensus 3 ai~~G-FtSVM~D~S-------~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F 73 (192)
+-++| |+-|=+-.| ...+..+.+...++++..++. +++|-.=|.- ..++..+..+.
T Consensus 113 ~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~---------------~~~~~~~~a~~ 177 (301)
T PRK07259 113 LSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP---------------NVTDIVEIAKA 177 (301)
T ss_pred HhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC---------------CchhHHHHHHH
Confidence 44567 777766332 245666778888888888865 4444333320 12344555566
Q ss_pred hhhhCCcEEEEecCcCCCC-----------------CCCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 74 IDETDIDALAVCIGNVHGK-----------------YPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~-----------------y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.|.+ ++|.||. |.+. ...+.++.+++|++.+ ++|++-=||-- +.++..++
T Consensus 178 l~~~G~d~i~~-~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GGI~-~~~da~~~ 252 (301)
T PRK07259 178 AEEAGADGLSL-INTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGGIS-SAEDAIEF 252 (301)
T ss_pred HHHcCCCEEEE-EccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECCCC-CHHHHHHH
Confidence 78899999955 3444443 3221 0124678888898887 69999777544 45678888
Q ss_pred HhcCCeEeecchHHH
Q 029526 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+..|..=|-++|.+.
T Consensus 253 l~aGAd~V~igr~ll 267 (301)
T PRK07259 253 IMAGASAVQVGTANF 267 (301)
T ss_pred HHcCCCceeEcHHHh
Confidence 899998899998875
No 125
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.87 E-value=0.52 Score=40.94 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.-||..|++.. +.|+|++-+ -||+-+| -.+.+.|+.|.+.. ++|++.=||-+.|++ ..+++++|.
T Consensus 131 ~dd~~~ar~l~-~~G~~~vmPlg~pIGsg~G-------i~~~~~I~~I~e~~---~vpVI~egGI~tped-a~~AmelGA 198 (248)
T cd04728 131 TDDPVLAKRLE-DAGCAAVMPLGSPIGSGQG-------LLNPYNLRIIIERA---DVPVIVDAGIGTPSD-AAQAMELGA 198 (248)
T ss_pred CCCHHHHHHHH-HcCCCEeCCCCcCCCCCCC-------CCCHHHHHHHHHhC---CCcEEEeCCCCCHHH-HHHHHHcCC
Confidence 35888898855 559999955 3554332 23689999999876 699999999998755 999999999
Q ss_pred eEeecchHHH
Q 029526 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+-
T Consensus 199 dgVlV~SAIt 208 (248)
T cd04728 199 DAVLLNTAIA 208 (248)
T ss_pred CEEEEChHhc
Confidence 9999999885
No 126
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.87 E-value=0.33 Score=46.93 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|.++|.+.+-+=-|.-++ +|+ ++.+++|++.|..|++-+....+ .+.+|+...++++ +.|
T Consensus 104 ~A~~~Gvd~irif~~lnd~-~n~---~~~i~~ak~~G~~v~~~i~~t~~------------p~~t~~~~~~~a~~l~~~G 167 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDV-RNM---EVAIKAAKKAGAHVQGTISYTTS------------PVHTIEKYVELAKELEEMG 167 (592)
T ss_pred HHHHCCCCEEEEEEecChH-HHH---HHHHHHHHHcCCEEEEEEEeccC------------CCCCHHHHHHHHHHHHHcC
Confidence 5778888877644333333 454 56678899999998876644321 1345766655544 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEeec
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+|.|.++ -.=|.- .|.-=.++++.|++.+ ++||-+| -.+|+.-...-.|++.|+.-|..
T Consensus 168 ad~I~i~--Dt~G~~---~P~~~~~lv~~lk~~~---~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 168 CDSICIK--DMAGLL---TPYAAYELVKALKEEV---DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred CCEEEEC--CcCCCc---CHHHHHHHHHHHHHhC---CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 9988765 222322 2433456667777766 4676665 58899999999999999987754
No 127
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=94.86 E-value=2 Score=36.82 Aligned_cols=145 Identities=21% Similarity=0.181 Sum_probs=92.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
+|++.|.+.|.+=.|.-+. ...++.+++|+..|..|..-+-.. ..++|+...+++++ .|
T Consensus 93 ~a~~~g~~~iri~~~~s~~----~~~~~~i~~ak~~G~~v~~~~~~~--------------~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 93 MAADLGVDVVRVATHCTEA----DVSEQHIGAARKLGMDVVGFLMMS--------------HMASPEELAEQAKLMESYG 154 (263)
T ss_pred HHHHcCCCEEEEEechhhH----HHHHHHHHHHHHCCCeEEEEEEec--------------cCCCHHHHHHHHHHHHHcC
Confidence 5788899988875444433 356889999999998777654221 24677777776554 68
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEe------------e
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|.+.++ -.=|.- .|.-=.++++.|++..+ .+||.+|+ .-|+.-.....|++.|+.-| |
T Consensus 155 ~d~i~l~--DT~G~~---~P~~v~~lv~~l~~~~~--~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN 227 (263)
T cd07943 155 ADCVYVT--DSAGAM---LPDDVRERVRALREALD--PTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGN 227 (263)
T ss_pred CCEEEEc--CCCCCc---CHHHHHHHHHHHHHhCC--CceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCC
Confidence 9976553 332322 13322344566666653 24888776 45777778889999998877 5
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHH
Q 029526 145 VNTEVRKAYMDSLS-RPKSDLIHLMASA 171 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~ 171 (192)
..|+...++.+... +++.|+..++..+
T Consensus 228 ~~~E~lv~~L~~~g~~~~idl~~l~~~~ 255 (263)
T cd07943 228 TPLEVLVAVLERMGIETGIDLYKLMDAA 255 (263)
T ss_pred ccHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 67888777776542 3344655554433
No 128
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.79 E-value=0.98 Score=38.21 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=78.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC-----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG-----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g-----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+.+.+|.+-|.+-.+.+.- + .. -++++.+| +++-.-=|.+. ....--+|.+..+.+++
T Consensus 95 ~~l~~Ga~~viigt~~~~~-~---~~---~~~~~~~~~~~iivslD~~~~~~~----------~~~~~~~~~~~~~~~~~ 157 (233)
T cd04723 95 EWLKRGASRVIVGTETLPS-D---DD---EDRLAALGEQRLVLSLDFRGGQLL----------KPTDFIGPEELLRRLAK 157 (233)
T ss_pred HHHHcCCCeEEEcceeccc-h---HH---HHHHHhcCCCCeEEEEeccCCeec----------cccCcCCHHHHHHHHHH
Confidence 4678898888887666654 3 22 23344443 22222111111 11234578887777777
Q ss_pred hCCcEEE-EecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 77 TDIDALA-VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LA-vaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
. ++.|- ..+... |. ....|++.+++|.+.+ ++|+..-||-+.+++ ++++.+.|+.++-++|.+.
T Consensus 158 ~-~~~li~~di~~~-G~----~~g~~~~~~~~i~~~~---~ipvi~~GGi~s~ed-i~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 158 W-PEELIVLDIDRV-GS----GQGPDLELLERLAARA---DIPVIAAGGVRSVED-LELLKKLGASGALVASALH 222 (233)
T ss_pred h-CCeEEEEEcCcc-cc----CCCcCHHHHHHHHHhc---CCCEEEeCCCCCHHH-HHHHHHcCCCEEEEehHHH
Confidence 6 76443 334332 11 1335899999999887 699999999886655 8999999999999999874
No 129
>PRK09389 (R)-citramalate synthase; Provisional
Probab=94.76 E-value=0.43 Score=45.02 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=85.5
Q ss_pred hhhhcCCCEeEeeCCCCC----------HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHLP----------FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~----------~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
+|+++|.+.|.+=.|.-| .+||++...+.+++|+..|..|+--+ || ...|+|+-+.
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed--------~~r~~~~~l~ 146 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------ED--------ASRADLDFLK 146 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------ee--------CCCCCHHHHH
Confidence 578889888776666554 58999999999999999998776532 22 2468898888
Q ss_pred HHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 72 EFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 72 ~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
++++ +.|+|.+-++ -.=|.. .|.-=.++++.+++.. ++||-+|+ ..|+.-..-..|+..|+..|+.
T Consensus 147 ~~~~~~~~~Ga~~i~l~--DTvG~~---~P~~~~~lv~~l~~~~---~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~ 217 (488)
T PRK09389 147 ELYKAGIEAGADRICFC--DTVGIL---TPEKTYELFKRLSELV---KGPVSIHCHNDFGLAVANTLAALAAGADQVHV 217 (488)
T ss_pred HHHHHHHhCCCCEEEEe--cCCCCc---CHHHHHHHHHHHHhhc---CCeEEEEecCCccHHHHHHHHHHHcCCCEEEE
Confidence 7764 4688886553 222222 2433345566676655 58888865 5677788888899999988753
No 130
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.76 E-value=0.44 Score=44.12 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=81.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
..+++|-+-|-+|.++-. .+++ .+.++..++. ++. -|.+ ...++++|+.-+ +.|+
T Consensus 160 ~lv~aGvDvI~iD~a~g~-~~~~---~~~v~~ik~~~p~~~------vi~g------------~V~T~e~a~~l~-~aGa 216 (404)
T PRK06843 160 ELVKAHVDILVIDSAHGH-STRI---IELVKKIKTKYPNLD------LIAG------------NIVTKEAALDLI-SVGA 216 (404)
T ss_pred HHHhcCCCEEEEECCCCC-ChhH---HHHHHHHHhhCCCCc------EEEE------------ecCCHHHHHHHH-HcCC
Confidence 357889999999999943 2222 2333333431 111 1111 246778888755 6899
Q ss_pred cEEEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 DALAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++.|++|. .|+.- ..+...-++..+.++.+..+..++|+..-||--.|.+ +.+|+.+|..=|=++|.+.
T Consensus 217 D~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~D-i~KALalGA~aVmvGs~~a 289 (404)
T PRK06843 217 DCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGD-VVKAIAAGADSVMIGNLFA 289 (404)
T ss_pred CEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHH-HHHHHHcCCCEEEEcceee
Confidence 999987753 34321 1111112677777777766555799999998877655 9999999999999999874
No 131
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.74 E-value=1.1 Score=40.53 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
+++++|+. +.+.|||.+-|+- ||...-....--++.|.+|++.... ..+||..=||-..+. ++-|++.+|..=
T Consensus 222 ~~~~dA~~-a~~~G~d~I~vsn---hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~-Dv~kalaLGA~a 296 (344)
T cd02922 222 QTVEDAVL-AAEYGVDGIVLSN---HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGT-DVLKALCLGAKA 296 (344)
T ss_pred CCHHHHHH-HHHcCCCEEEEEC---CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHH-HHHHHHHcCCCE
Confidence 56888876 5689999999882 7654321111125567888875422 148988888776655 599999999999
Q ss_pred eecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 143 FNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 143 INi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+-++|.+..+.... -.+-+....+.+++.++..|.++|+.
T Consensus 297 V~iG~~~l~~l~~~-------G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 297 VGLGRPFLYALSAY-------GEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred EEECHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999998877431 12334455677888889999999975
No 132
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.73 E-value=4.9 Score=39.90 Aligned_cols=144 Identities=20% Similarity=0.292 Sum_probs=99.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc---ccccCCCCCccc-------c--cc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG---RLSGTEDGLTVE-------D--YE 61 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG---~i~g~e~~~~~~-------~--~~ 61 (192)
++++.|-+.|=+=--.+|-++-.+..+++.++|+++|+.+=- ++| |+|. +|..... . -.
T Consensus 27 ~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~dVHlg~-~dl~~~~~r~~~~~~~~iG 105 (755)
T PRK09517 27 SAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLHVHIGQ-GDTPYTQARRLLPAHLELG 105 (755)
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCeecCC-CcCCHHHHHHhcCCCCEEE
Confidence 578899999999989999999999999999999998876544 555 4543 2211000 0 01
Q ss_pred ccCCCHHHHHHHhh---hh---CCcEEEEecCcCCCCC-CCC-CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029526 62 AKLTDVNQAEEFID---ET---DIDALAVCIGNVHGKY-PSS-GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 62 ~~~T~peea~~Fv~---~T---gvD~LAvaiGt~HG~y-~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
..--+.+|+.+-.. .. |+|.+.+ |.++--- |++ .|.+.++.|+++.+.++..++|+|--| |+..+++.
T Consensus 106 ~S~h~~~e~~~~~~~~~~~g~~gaDYi~~--Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiG--GI~~~~~~ 181 (755)
T PRK09517 106 LTIETLDQLEAVIAQCAETGVALPDVIGI--GPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIG--GVGLRNAA 181 (755)
T ss_pred EeCCCHHHHHHHHhhhccCCCCCCCEEEE--CCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEEC--CCCHHHHH
Confidence 11235666654322 23 4998875 5553221 111 246899999999988842239999999 88999999
Q ss_pred HHHhcCCeEeecchHHH
Q 029526 134 GCIERGVRKFNVNTEVR 150 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~l~ 150 (192)
++.+.|+.=|=+-+.+.
T Consensus 182 ~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 182 ELAATGIDGLCVVSAIM 198 (755)
T ss_pred HHHHcCCCEEEEehHhh
Confidence 99999999888877764
No 133
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.64 E-value=0.58 Score=44.38 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
..+++|-+-|-+|.++-.-. .+.+.++..++.-= ++--|. ...+++++|+.-+ +.|+|+
T Consensus 255 ~l~~ag~d~i~iD~~~g~~~----~~~~~i~~ik~~~p----~~~vi~------------g~v~t~e~a~~a~-~aGaD~ 313 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQGDSI----YQLEMIKYIKKTYP----ELDVIG------------GNVVTMYQAQNLI-QAGVDG 313 (505)
T ss_pred HHHHcCCCEEEEeCCCCCcH----HHHHHHHHHHHhCC----CCcEEE------------ecCCCHHHHHHHH-HcCcCE
Confidence 35788999999999873222 22233444443200 011111 1247888998866 699999
Q ss_pred EEEecCcCCCCCCC-----CCCC-CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPS-----SGPN-LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~-----~~p~-ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.|++|+-.-.|.. +.|. =.+..+.++.+.. ++|+..=||-..|.+ +.+|+.+|..=+-++|.+.
T Consensus 314 i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~---~vpVIadGGI~~~~d-i~kAla~GA~~V~vGs~~~ 384 (505)
T PLN02274 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH---GVPVIADGGISNSGH-IVKALTLGASTVMMGSFLA 384 (505)
T ss_pred EEECCCCCccccCccccccCCCcccHHHHHHHHHHhc---CCeEEEeCCCCCHHH-HHHHHHcCCCEEEEchhhc
Confidence 99876533212211 1122 1444566666554 699999999988855 9999999999999999884
No 134
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=94.62 E-value=0.84 Score=41.60 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=90.8
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhCCCeEEEecc-ccccCCCCCcccc
Q 029526 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSKGMLVEAELG-RLSGTEDGLTVED 59 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG-~i~g~e~~~~~~~ 59 (192)
++|+++||+-|-|=|+|= ++|.=.+.++||++-.++. |.=+.=+| ++...+. .
T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~-vg~~~~vg~Rls~~d~--~--- 229 (363)
T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA-VGADFPVGVRLSPDDF--F--- 229 (363)
T ss_pred HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH-hCCCceEEEEECcccc--C---
Confidence 479999999999999983 5788899999999999863 11111011 1111111 0
Q ss_pred ccccCCCHHHHHHH---hhhhC-CcEEEEecCcCCC--CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029526 60 YEAKLTDVNQAEEF---IDETD-IDALAVCIGNVHG--KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 60 ~~~~~T~peea~~F---v~~Tg-vD~LAvaiGt~HG--~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
...-.+++++.++ +++.| ||.|-++-|..+. ......|.......+.|+..+ .+|+..=|+ ..+.++-.
T Consensus 230 -~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~---~~pvi~~G~-i~~~~~Ae 304 (363)
T COG1902 230 -DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV---RIPVIAVGG-INDPEQAE 304 (363)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc---CCCEEEeCC-CCCHHHHH
Confidence 0112455565555 56689 8999999999862 222111333445556788777 588877776 77888899
Q ss_pred HHHhcC-CeEeecchHH
Q 029526 134 GCIERG-VRKFNVNTEV 149 (192)
Q Consensus 134 ~~i~~G-i~KINi~T~l 149 (192)
+.++.| +-=|=++.++
T Consensus 305 ~~l~~g~aDlVa~gR~~ 321 (363)
T COG1902 305 EILASGRADLVAMGRPF 321 (363)
T ss_pred HHHHcCCCCEEEechhh
Confidence 999998 6677777665
No 135
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.62 E-value=2.3 Score=38.15 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=93.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~Tg 78 (192)
+|.++|.+.|-+=.+ ....+ ..++.+++|+..|..|.+-+-. ...++|++..+++ ++.|
T Consensus 95 ~a~~~gvd~iri~~~-~~e~d---~~~~~i~~ak~~G~~v~~~l~~--------------s~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 95 AAYDAGARTVRVATH-CTEAD---VSEQHIGMARELGMDTVGFLMM--------------SHMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHCCCCEEEEEec-cchHH---HHHHHHHHHHHcCCeEEEEEEc--------------ccCCCHHHHHHHHHHHHhcC
Confidence 578889888876443 33333 3579999999999776643311 1357787776665 4579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC--CCCCHHHHHHHHhcCCeEe------------e
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA--SGLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg--SG~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|++-++ -.-|... |.-=.++++.|++..+ +++|+-+|+= -|+.-..-..|++.|+.-| |
T Consensus 157 a~~i~i~--DT~G~~~---P~~v~~~v~~l~~~l~-~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN 230 (333)
T TIGR03217 157 ADCVYIV--DSAGAML---PDDVRDRVRALKAVLK-PETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGN 230 (333)
T ss_pred CCEEEEc--cCCCCCC---HHHHHHHHHHHHHhCC-CCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccC
Confidence 9976543 3333322 3222344556665552 1388888875 5666778888999998887 5
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHHHHHH
Q 029526 145 VNTEVRKAYMDSLS-RPKSDLIHLMASAKEAM 175 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~~~~~ 175 (192)
..|+...++.+... +...|+..++..+..-+
T Consensus 231 ~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v 262 (333)
T TIGR03217 231 APLEVFVAVLDRLGWNTGCDLFKLMDAAEDIV 262 (333)
T ss_pred ccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 67888777776542 33446655555444333
No 136
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.59 E-value=0.59 Score=44.17 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=81.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
..+++|.+-|-+|.++-.-...+...+++.+.- + ++.|=+ | .-.++++|+..+ +-|+|+
T Consensus 248 ~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-~-~~~v~a--G----------------~V~t~~~a~~~~-~aGad~ 306 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-P-HVDIIA--G----------------NVVTADQAKNLI-DAGADG 306 (495)
T ss_pred HHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-C-CceEEE--C----------------CcCCHHHHHHHH-HcCCCE
Confidence 457889999999997542222233333333311 1 222222 1 236778888755 789999
Q ss_pred EEEecCcC-----CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNV-----HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~-----HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|++|.- +-...-+.| ++..+.++.+..+..++|+.-=||-..|.| +.+|+.+|..=+-++|.+.
T Consensus 307 I~vg~g~Gs~~~t~~~~~~g~p--~~~ai~~~~~~~~~~~v~vIadGGi~~~~d-i~kAla~GA~~Vm~G~~~a 377 (495)
T PTZ00314 307 LRIGMGSGSICITQEVCAVGRP--QASAVYHVARYARERGVPCIADGGIKNSGD-ICKALALGADCVMLGSLLA 377 (495)
T ss_pred EEECCcCCcccccchhccCCCC--hHHHHHHHHHHHhhcCCeEEecCCCCCHHH-HHHHHHcCCCEEEECchhc
Confidence 98876532 211111124 456677777776656899999999887765 9999999999999999874
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.57 E-value=0.27 Score=41.80 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=61.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..+..+..|+|.+-+.==+.-+.+ -..+++.+++|++.+ ++|+..=||-.. .+++++++..|+.++-
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~----~~~~~~~i~~i~~~~---~ipv~~~GGi~s-~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEG----RDTMLDVVERVAEQV---FIPLTVGGGIRS-VEDARRLLRAGADKVS 101 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc----CcchHHHHHHHHHhC---CCCEEeeCCCCC-HHHHHHHHHcCCCEEE
Confidence 48988777788999999988644433333 246899999999887 699888887764 5669999999999999
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 102 igt~~l 107 (253)
T PRK02083 102 INSAAV 107 (253)
T ss_pred EChhHh
Confidence 999763
No 138
>PLN02535 glycolate oxidase
Probab=94.55 E-value=0.9 Score=41.48 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCC-----HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLK-----LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld-----~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
..+|++|+. +.+.|+|.+.|+- ||. ..+| ++.|.++++.+.. .+|+..=||-..+.| +.|++.+
T Consensus 231 V~~~~dA~~-a~~~GvD~I~vsn---~GG-----r~~d~~~~t~~~L~ev~~av~~-~ipVi~dGGIr~g~D-v~KALal 299 (364)
T PLN02535 231 VLTREDAIK-AVEVGVAGIIVSN---HGA-----RQLDYSPATISVLEEVVQAVGG-RVPVLLDGGVRRGTD-VFKALAL 299 (364)
T ss_pred CCCHHHHHH-HHhcCCCEEEEeC---CCc-----CCCCCChHHHHHHHHHHHHHhc-CCCEEeeCCCCCHHH-HHHHHHc
Confidence 378999876 5578999998762 442 2233 6778888776632 599999999887766 8899999
Q ss_pred CCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 139 GVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 139 Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
|..-+-+++.+.++....- ..-...+.+.+++.++..|.+.|+.
T Consensus 300 GA~aV~vGr~~l~~l~~~g-------~~gv~~~l~~l~~el~~~m~l~G~~ 343 (364)
T PLN02535 300 GAQAVLVGRPVIYGLAAKG-------EDGVRKVIEMLKDELEITMALSGCP 343 (364)
T ss_pred CCCEEEECHHHHhhhhhcc-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999987654210 1123344555677777888888764
No 139
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.50 E-value=0.12 Score=45.26 Aligned_cols=71 Identities=18% Similarity=0.383 Sum_probs=50.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|++.||+|.- |.+..+++|++.+. -++.+|++ | .. +|+.+++|. +|||
T Consensus 197 ~A~~~GaDiI~LDn~------~~e~l~~~v~~~~~~~~~~~ieAs-----G------------gI-t~~ni~~ya-~~Gv 251 (273)
T PRK05848 197 NAMNAGADIVMCDNM------SVEEIKEVVAYRNANYPHVLLEAS-----G------------NI-TLENINAYA-KSGV 251 (273)
T ss_pred HHHHcCCCEEEECCC------CHHHHHHHHHHhhccCCCeEEEEE-----C------------CC-CHHHHHHHH-HcCC
Confidence 689999999999984 55567777777543 35667777 1 12 678999976 9999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.+. +|.. |.+ .|.+||.
T Consensus 252 D~Is--vG~l---~~s-a~~~D~s 269 (273)
T PRK05848 252 DAIS--SGSL---IHQ-ATWIDMS 269 (273)
T ss_pred CEEE--eChh---hcC-CCcccee
Confidence 9765 4543 443 3667764
No 140
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.46 E-value=0.14 Score=43.09 Aligned_cols=121 Identities=26% Similarity=0.241 Sum_probs=77.8
Q ss_pred hhhhcCCCEeEe------eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHH
Q 029526 2 EAIVLGFDSLMV------DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEE 72 (192)
Q Consensus 2 ~ai~~GFtSVM~------D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~ 72 (192)
+|++.|-+-|.+ ++|.. .+++++..+++++.||.+|+.|=-| +.+.+.+-.. .+ +| ..|-+
T Consensus 84 ~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~-------~~-~~~~I~~a~r 153 (236)
T PF01791_consen 84 EAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVAD-------EK-KPDLIARAAR 153 (236)
T ss_dssp HHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSS-------TT-HHHHHHHHHH
T ss_pred HHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcc-------cc-cHHHHHHHHH
Confidence 578888776642 34444 8999999999999999999999999 7764332100 11 43 34555
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc----EEeecCCCCCHHHHHH-------HHhcCCe
Q 029526 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL----LVLHGASGLSAELIKG-------CIERGVR 141 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP----LVlHGgSG~~~e~~~~-------~i~~Gi~ 141 (192)
-..+.|+|++=.+.|..||... -|.++++++-+.. ++| +++=||. +.++|.+ +++.|..
T Consensus 154 ia~e~GaD~vKt~tg~~~~~t~-----~~~~~~~~~~~~~---~~p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~ 223 (236)
T PF01791_consen 154 IAAELGADFVKTSTGKPVGATP-----EDVELMRKAVEAA---PVPGKVGVKASGGI--DAEDFLRTLEDALEFIEAGAD 223 (236)
T ss_dssp HHHHTT-SEEEEE-SSSSCSHH-----HHHHHHHHHHHTH---SSTTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHS
T ss_pred HHHHhCCCEEEecCCccccccH-----HHHHHHHHHHHhc---CCCcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCCh
Confidence 5667999999999994443221 2455555555444 689 9999976 5555443 4477764
Q ss_pred E
Q 029526 142 K 142 (192)
Q Consensus 142 K 142 (192)
.
T Consensus 224 ~ 224 (236)
T PF01791_consen 224 R 224 (236)
T ss_dssp E
T ss_pred h
Confidence 4
No 141
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=94.36 E-value=0.85 Score=36.87 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=50.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH---HHHHHHHhhhc--cCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL---DLLKDLHALSS--KKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~---~~L~~I~~~~~--~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
|..+..+++.+. +|.+.+ ++.|....+ ..++. +.++++++.+. ..++|+++=| |+..++++++++.|
T Consensus 116 ~~~~~~~~~~~~--~d~i~~--~~~~~g~tg--~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G--GI~~env~~~~~~g 187 (211)
T cd00429 116 TPVEVLEPYLDE--VDLVLV--MSVNPGFGG--QKFIPEVLEKIRKLRELIPENNLNLLIEVDG--GINLETIPLLAEAG 187 (211)
T ss_pred CCHHHHHHHHhh--CCEEEE--EEECCCCCC--cccCHHHHHHHHHHHHHHHhcCCCeEEEEEC--CCCHHHHHHHHHcC
Confidence 334556666544 787754 455532221 34444 44455555542 0138998888 78889999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-+++.+.
T Consensus 188 ad~iivgsai~ 198 (211)
T cd00429 188 ADVLVAGSALF 198 (211)
T ss_pred CCEEEECHHHh
Confidence 99999999885
No 142
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=94.32 E-value=0.74 Score=43.81 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=80.5
Q ss_pred hhhcCCCEeEeeCC----------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 3 AIVLGFDSLMVDGS----------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSVM~D~S----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|.+-|.+=.| ..+.+|+++..++.+++|+.+|..|+- + .+.-. +...|+|+-+.+
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~--~----~e~~~-----Da~r~d~~~l~~ 162 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF--D----AEHFF-----DGYKANPEYALA 162 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE--c----ccccc-----ccccCCHHHHHH
Confidence 45666655554322 346799999999999999999987762 1 12100 113488988877
Q ss_pred Hhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 73 FID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 73 Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
+++ +.|+|.+-++ -.=|.- .|.-=.++++.|++.+ ++||-+|+ ..|+.-..--.|+..|+..|+
T Consensus 163 ~~~~~~~~Gad~i~l~--DTvG~~---~P~~v~~li~~l~~~~---~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd 231 (524)
T PRK12344 163 TLKAAAEAGADWVVLC--DTNGGT---LPHEVAEIVAEVRAAP---GVPLGIHAHNDSGCAVANSLAAVEAGARQVQ 231 (524)
T ss_pred HHHHHHhCCCCeEEEc--cCCCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 764 5789987654 222221 2443456667777766 58888776 456777777888888888774
No 143
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=94.32 E-value=1.5 Score=39.73 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=84.2
Q ss_pred ChhhhcCCCEeEeeCCC----------C----------CHHHHHHHHHHHHHHHHhC-C--CeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSH----------L----------PFKDNISHTKYISFLAHSK-G--MLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~----------l----------~~eeNi~~Tk~vv~~Ah~~-g--v~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|-+-+.+ . ++|...+...|+++-.++. | +.|--=|+. .+ ....
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~---~~-~~~~ 232 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSV---DE-LIGP 232 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecH---HH-hcCC
Confidence 36889999999998776 1 5789999999999988873 3 333333331 11 1100
Q ss_pred ccccccCCCHHHHHHHhhhh--CCcEEEEecCcC--CCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH
Q 029526 58 EDYEAKLTDVNQAEEFIDET--DIDALAVCIGNV--HGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI 132 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~T--gvD~LAvaiGt~--HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~ 132 (192)
. ...+++++.+|++.- .+|++-|+.|+. ++.... ..+...++..++|++.+ ++|+..-|+-- +.++.
T Consensus 233 ---~-g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~G~i~-~~~~~ 304 (370)
T cd02929 233 ---G-GIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT---SKPVVGVGRFT-SPDKM 304 (370)
T ss_pred ---C-CCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC---CCCEEEeCCCC-CHHHH
Confidence 0 123577777775432 489999999964 222111 01334577788999888 69988888643 55778
Q ss_pred HHHHhcCC
Q 029526 133 KGCIERGV 140 (192)
Q Consensus 133 ~~~i~~Gi 140 (192)
.++++.|.
T Consensus 305 ~~~l~~g~ 312 (370)
T cd02929 305 VEVVKSGI 312 (370)
T ss_pred HHHHHcCC
Confidence 88998874
No 144
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.31 E-value=0.87 Score=38.69 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=78.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC---CeEEEec------c--ccccCCCCCccccccccCCCHHHH
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG---MLVEAEL------G--RLSGTEDGLTVEDYEAKLTDVNQA 70 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g---v~VEaEl------G--~i~g~e~~~~~~~~~~~~T~peea 70 (192)
+++..|.+.||+..+.+. |.... .++++.+| +-+-..+ | .|-- .. +. +..-.++.+.
T Consensus 91 ~~l~~Ga~~Viigt~~l~---~p~~~---~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~-~~----~~-~~~~~~~~~~ 158 (253)
T PRK02083 91 RLLRAGADKVSINSAAVA---NPELI---SEAADRFGSQCIVVAIDAKRDPEPGRWEVYT-HG----GR-KPTGLDAVEW 158 (253)
T ss_pred HHHHcCCCEEEEChhHhh---CcHHH---HHHHHHcCCCCEEEEEEeccCCCCCCEEEEE-cC----Cc-eecCCCHHHH
Confidence 567899999999866554 33333 34455554 2222221 2 1100 00 00 0111255565
Q ss_pred HHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029526 71 EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 71 ~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
.+-+.+.|+|.+-+. +.+ .. +....+|+++++++.+.+ ++|+..-||-+.+++ +.++.+ .|+.-+=++|.+
T Consensus 159 ~~~~~~~g~~~ii~~--~i~-~~-g~~~g~d~~~i~~~~~~~---~ipvia~GGv~s~~d-~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 159 AKEVEELGAGEILLT--SMD-RD-GTKNGYDLELTRAVSDAV---NVPVIASGGAGNLEH-FVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHcCCCEEEEc--CCc-CC-CCCCCcCHHHHHHHHhhC---CCCEEEECCCCCHHH-HHHHHHhCCccEEeEhHHH
Confidence 555678899987552 222 10 112345899999999887 699999999886655 667776 599999999887
Q ss_pred H
Q 029526 150 R 150 (192)
Q Consensus 150 ~ 150 (192)
.
T Consensus 231 ~ 231 (253)
T PRK02083 231 H 231 (253)
T ss_pred H
Confidence 4
No 145
>PLN02591 tryptophan synthase
Probab=94.27 E-value=3.2 Score=35.91 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=78.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-++|.+.|.+= .||+||.- ++.+.|+++|+..=- -+ +.-|+++-.++-.+.+. ++
T Consensus 101 ~~~~aGv~Gviip--DLP~ee~~----~~~~~~~~~gl~~I~---lv-------------~Ptt~~~ri~~ia~~~~-gF 157 (250)
T PLN02591 101 TIKEAGVHGLVVP--DLPLEETE----ALRAEAAKNGIELVL---LT-------------TPTTPTERMKAIAEASE-GF 157 (250)
T ss_pred HHHHcCCCEEEeC--CCCHHHHH----HHHHHHHHcCCeEEE---Ee-------------CCCCCHHHHHHHHHhCC-Cc
Confidence 5778999999886 58987654 888889988764311 01 01233444555444432 22
Q ss_pred E-EEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHH
Q 029526 82 L-AVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 82 L-Ava-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
+ .|| -|+. |.-.. .|.--.+.++++++.+ ++|+++ |.|++ .|+++++.+.|..=+=|+|.+-+..
T Consensus 158 IY~Vs~~GvT-G~~~~-~~~~~~~~i~~vk~~~---~~Pv~v--GFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 158 VYLVSSTGVT-GARAS-VSGRVESLLQELKEVT---DKPVAV--GFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred EEEeeCCCCc-CCCcC-CchhHHHHHHHHHhcC---CCceEE--eCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 2 233 3433 32111 1221133467777765 699998 89999 9999999999999999999986444
No 146
>PRK06852 aldolase; Validated
Probab=94.17 E-value=1.3 Score=39.44 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=82.5
Q ss_pred hhhhcCCC--------EeEee-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 2 EAIVLGFD--------SLMVD-GSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 2 ~ai~~GFt--------SVM~D-~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
+|+++|.+ |+++- ||. ...++++...++++-||++|++|=+.+=--|.. ... +.......-|.+
T Consensus 123 eAvrlG~~~~~~AdAV~v~v~~Gs~-~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~---i~~---~~~~~~ia~aaR 195 (304)
T PRK06852 123 QVVEFKENSGLNILGVGYTIYLGSE-YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKA---VKD---EKDPHLIAGAAG 195 (304)
T ss_pred HHHhcCCccCCCceEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcc---cCC---CccHHHHHHHHH
Confidence 68888833 33333 343 447899999999999999999998754222211 110 101122344556
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH----HHHHh-cCCeEeecch
Q 029526 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI----KGCIE-RGVRKFNVNT 147 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~----~~~i~-~Gi~KINi~T 147 (192)
-..+-|.|.+=+-.=+.||. =+.+.++++-+.+. ++|+|+=||+-.++++| +.+++ .|..=+-++-
T Consensus 196 iaaELGADIVKv~y~~~~~~-------g~~e~f~~vv~~~g--~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GR 266 (304)
T PRK06852 196 VAACLGADFVKVNYPKKEGA-------NPAELFKEAVLAAG--RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGR 266 (304)
T ss_pred HHHHHcCCEEEecCCCcCCC-------CCHHHHHHHHHhCC--CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeech
Confidence 66778999998863222221 24677777766552 59999999999987654 44566 6766666553
Q ss_pred H
Q 029526 148 E 148 (192)
Q Consensus 148 ~ 148 (192)
-
T Consensus 267 N 267 (304)
T PRK06852 267 N 267 (304)
T ss_pred h
Confidence 3
No 147
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.17 E-value=0.34 Score=42.08 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.-||..|++.. +.|+|++-+ -||+-+| -.+.+.|+.|.+.. ++|++.=||-+.|++ ..+++++|.
T Consensus 131 ~~d~~~ak~l~-~~G~~~vmPlg~pIGsg~g-------i~~~~~i~~i~e~~---~vpVIveaGI~tped-a~~AmelGA 198 (250)
T PRK00208 131 TDDPVLAKRLE-EAGCAAVMPLGAPIGSGLG-------LLNPYNLRIIIEQA---DVPVIVDAGIGTPSD-AAQAMELGA 198 (250)
T ss_pred CCCHHHHHHHH-HcCCCEeCCCCcCCCCCCC-------CCCHHHHHHHHHhc---CCeEEEeCCCCCHHH-HHHHHHcCC
Confidence 35889999865 559999955 4665443 23577899998875 699999999988755 999999999
Q ss_pred eEeecchHHH
Q 029526 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+-
T Consensus 199 dgVlV~SAIt 208 (250)
T PRK00208 199 DAVLLNTAIA 208 (250)
T ss_pred CEEEEChHhh
Confidence 9999999884
No 148
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.13 E-value=0.83 Score=39.30 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred hhhcCCCEeEeeCCCC------CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCC--CHHHHHHH
Q 029526 3 AIVLGFDSLMVDGSHL------PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLT--DVNQAEEF 73 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T--~peea~~F 73 (192)
+.++|++-|-+..|.- ++..|-+..+++++..++. +++|=.=++.. .+ +..+..+.
T Consensus 120 ~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---------------~~~~~~~~~a~~ 184 (289)
T cd02810 120 IERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY---------------FDLEDIVELAKA 184 (289)
T ss_pred HHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC---------------CCHHHHHHHHHH
Confidence 4566777777776532 2344556667777766653 44443333311 11 23344445
Q ss_pred hhhhCCcEEEEecCc----------------CCCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 74 IDETDIDALAVCIGN----------------VHGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 74 v~~TgvD~LAvaiGt----------------~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+++.|+|.|.+.-++ .||.|.+ .+ .+.++.+++|++.+. .++|++-=||--. .+++.++
T Consensus 185 l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg-~~~~~~~~~~v~~i~~~~~-~~ipiia~GGI~~-~~da~~~ 261 (289)
T cd02810 185 AERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSG-APIRPLALRWVARLAARLQ-LDIPIIGVGGIDS-GEDVLEM 261 (289)
T ss_pred HHHcCCCEEEEEcccCccceecccCccccCCCCCccCc-HHHHHHHHHHHHHHHHhcC-CCCCEEEECCCCC-HHHHHHH
Confidence 677899999987443 2333332 11 134666777877662 1489998886553 4679999
Q ss_pred HhcCCeEeecchHHHH
Q 029526 136 IERGVRKFNVNTEVRK 151 (192)
Q Consensus 136 i~~Gi~KINi~T~l~~ 151 (192)
+..|..=|=++|.+..
T Consensus 262 l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 262 LMAGASAVQVATALMW 277 (289)
T ss_pred HHcCccHheEcHHHHh
Confidence 9999988989888753
No 149
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.12 E-value=2.7 Score=35.77 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=78.4
Q ss_pred hhhhcCCCEeEe-eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh-hhCC
Q 029526 2 EAIVLGFDSLMV-DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID-ETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~-~Tgv 79 (192)
++.++|.+.+.+ | ||+| ...++.+.|+++|+. ++.+- +.-|+++..+..++ ..|.
T Consensus 99 ~~~~aG~~giiipD---l~~e----e~~~~~~~~~~~g~~----~i~~i------------~P~T~~~~i~~i~~~~~~~ 155 (242)
T cd04724 99 DAKEAGVDGLIIPD---LPPE----EAEEFREAAKEYGLD----LIFLV------------APTTPDERIKKIAELASGF 155 (242)
T ss_pred HHHHCCCcEEEECC---CCHH----HHHHHHHHHHHcCCc----EEEEe------------CCCCCHHHHHHHHhhCCCC
Confidence 477889988777 5 4665 467888899988763 22221 12355565666665 3332
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
.+.+++.-..|.-.. .+.--.+.++++++.. ++|++. |.|+. .++++++++. ..=+=++|.+.....
T Consensus 156 -vy~~s~~g~tG~~~~-~~~~~~~~i~~lr~~~---~~pI~v--ggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~ 223 (242)
T cd04724 156 -IYYVSRTGVTGARTE-LPDDLKELIKRIRKYT---DLPIAV--GFGISTPEQAAEVAKY-ADGVIVGSALVKIIE 223 (242)
T ss_pred -EEEEeCCCCCCCccC-CChhHHHHHHHHHhcC---CCcEEE--EccCCCHHHHHHHHcc-CCEEEECHHHHHHHH
Confidence 345565555554321 1222346677777765 699999 44666 6689999999 888999998876553
No 150
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=94.08 E-value=1.6 Score=40.15 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=82.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..++++|+..+ +.|||.+-|| | ||.-......--++.|.+|.+.+. .++|+..=||--.+.| +-||+.+|-.=+
T Consensus 253 V~s~~dA~~a~-~~Gvd~I~Vs--~-hGGr~~d~~~~t~~~L~~i~~a~~-~~~~vi~dGGIr~g~D-i~KALaLGA~~V 326 (381)
T PRK11197 253 ILDPEDARDAV-RFGADGIVVS--N-HGGRQLDGVLSSARALPAIADAVK-GDITILADSGIRNGLD-VVRMIALGADTV 326 (381)
T ss_pred cCCHHHHHHHH-hCCCCEEEEC--C-CCCCCCCCcccHHHHHHHHHHHhc-CCCeEEeeCCcCcHHH-HHHHHHcCcCce
Confidence 46888888855 6899999887 3 765322111112577888887763 2599999998876655 899999999999
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
-+++.+.++.... -.+-.....+.+++.++..|.++|+..
T Consensus 327 ~iGr~~l~~la~~-------G~~gv~~~l~~l~~El~~~m~l~G~~~ 366 (381)
T PRK11197 327 LLGRAFVYALAAA-------GQAGVANLLDLIEKEMRVAMTLTGAKS 366 (381)
T ss_pred eEhHHHHHHHHhc-------cHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999998877431 122345567788888889999998753
No 151
>PRK12999 pyruvate carboxylase; Reviewed
Probab=93.94 E-value=0.74 Score=47.75 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=84.4
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhh
Q 029526 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~T 77 (192)
+|.++|.+.+- ||+ +..-+|+ +..++.++..|..+|+.++..|...|... ...+++-..++ +++.
T Consensus 635 ~a~~~Gid~~rifd~--lnd~~~~---~~~i~~vk~~g~~~~~~i~ytg~~~d~~~------~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 635 EAAAAGIDVFRIFDS--LNWVENM---RVAIDAVRETGKIAEAAICYTGDILDPAR------AKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred HHHHcCCCEEEEecc--CChHHHH---HHHHHHHHHcCCeEEEEEEEEecCCCCCC------CCCCHHHHHHHHHHHHHc
Confidence 57788887775 553 2223554 55566777778899999998876554321 12456544444 4567
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|+++ -.=|.. .|.-=.++++.|++.+ ++||-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 704 Ga~~i~ik--Dt~G~l---~P~~~~~lv~~lk~~~---~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 704 GAHILAIK--DMAGLL---KPAAAYELVSALKEEV---DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred CCCEEEEC--CccCCC---CHHHHHHHHHHHHHHc---CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 99988875 222332 2544567778888777 57877766 6788899999999999998865
No 152
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=93.88 E-value=0.4 Score=42.87 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=57.6
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH----HHHHHHHhhhccCCccEEeec-CCCCCHHHHHHHHhcCCe
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL----DLLKDLHALSSKKGVLLVLHG-ASGLSAELIKGCIERGVR 141 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~----~~L~~I~~~~~~~~iPLVlHG-gSG~~~e~~~~~i~~Gi~ 141 (192)
++++.+-++.-+.|++++-++..+-.-.+. ..=+| +.|+.|++.+ ++|+++.. |.|.+.+..+++.+.|+.
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~-g~~~f~~~le~i~~i~~~~---~vPVivK~~g~g~~~~~a~~L~~aGvd 205 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPE-GDRNFKGWLEKIAEICSQL---SVPVIVKEVGFGISKEVAKLLADAGVS 205 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCC-CCcCHHHHHHHHHHHHHhc---CCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence 777888888888999999886555332221 22357 5666777666 69999984 568999999999999999
Q ss_pred Eeecch
Q 029526 142 KFNVNT 147 (192)
Q Consensus 142 KINi~T 147 (192)
=|.++.
T Consensus 206 ~I~Vsg 211 (333)
T TIGR02151 206 AIDVAG 211 (333)
T ss_pred EEEECC
Confidence 988854
No 153
>PRK08227 autoinducer 2 aldolase; Validated
Probab=93.83 E-value=1.4 Score=38.50 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=83.0
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029526 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
+|+++|-+-|.+ =||. .-.++++...++++-||++|++|=+.. ..|.. ... + ..-..-|.+-..+-|
T Consensus 102 eAvrlGAdAV~~~v~~Gs~-~E~~~l~~l~~v~~ea~~~G~Plla~~-prG~~---~~~-~----~~~ia~aaRiaaELG 171 (264)
T PRK08227 102 DAVRLNACAVAAQVFIGSE-YEHQSIKNIIQLVDAGLRYGMPVMAVT-AVGKD---MVR-D----ARYFSLATRIAAEMG 171 (264)
T ss_pred HHHHCCCCEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCcEEEEe-cCCCC---cCc-h----HHHHHHHHHHHHHHc
Confidence 688999876553 3443 447899999999999999999988732 22211 000 0 002234555556789
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH----HHHHHhcCCeEeecchHHH
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL----IKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~----~~~~i~~Gi~KINi~T~l~ 150 (192)
.|.+=+. |+ . +.++++-+.. ++|+|+=||+-.++++ ++.+++.|.+=|-++-.+.
T Consensus 172 ADiVK~~-------y~----~---~~f~~vv~a~---~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 172 AQIIKTY-------YV----E---EGFERITAGC---PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred CCEEecC-------CC----H---HHHHHHHHcC---CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 9988764 43 1 5567776665 7999999999998765 4557888988888776553
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.79 E-value=1 Score=42.30 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCc--CCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGN--VHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt--~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
-.++++|+..+ +.|+|++-|++|. .|+.- ..+...-+++.|.++++..+..++|+..-||--.|.| +.||+.+|.
T Consensus 277 v~t~e~a~~l~-~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~d-i~kAla~GA 354 (486)
T PRK05567 277 VATAEAARALI-EAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGD-IAKALAAGA 354 (486)
T ss_pred cCCHHHHHHHH-HcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHH-HHHHHHhCC
Confidence 35677888755 7899999987764 33221 1112223788888888776545799999999888755 999999999
Q ss_pred eEeecchHHH
Q 029526 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=+=++|.+.
T Consensus 355 ~~v~~G~~~a 364 (486)
T PRK05567 355 SAVMLGSMLA 364 (486)
T ss_pred CEEEECcccc
Confidence 9999999884
No 155
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=93.68 E-value=2.5 Score=38.72 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=81.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|+..+ +.|||.+-||. ||.=......-.++.|.+|++.++. .+|+.+=||--.+.| +.|++.+|..-+=
T Consensus 237 ~~~eda~~a~-~~Gvd~I~VS~---HGGrq~~~~~a~~~~L~ei~~av~~-~i~vi~dGGIr~g~D-v~KaLalGAd~V~ 310 (367)
T TIGR02708 237 QCPEDADRAL-KAGASGIWVTN---HGGRQLDGGPAAFDSLQEVAEAVDK-RVPIVFDSGVRRGQH-VFKALASGADLVA 310 (367)
T ss_pred CCHHHHHHHH-HcCcCEEEECC---cCccCCCCCCcHHHHHHHHHHHhCC-CCcEEeeCCcCCHHH-HHHHHHcCCCEEE
Confidence 3588888865 68999888874 6542111122368899999988732 499999998776655 7788889999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
++-.+.++.... . .+-.....+.+++.++..|.++|+..
T Consensus 311 igR~~l~~la~~----G---~~gv~~~l~~l~~El~~~M~l~G~~~ 349 (367)
T TIGR02708 311 LGRPVIYGLALG----G---SQGARQVFEYLNKELKRVMQLTGTQT 349 (367)
T ss_pred EcHHHHHHHHhc----C---HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988775421 0 12344566778888899999999753
No 156
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.67 E-value=1.7 Score=38.07 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=78.3
Q ss_pred hhhhcCCCEeE---eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhh
Q 029526 2 EAIVLGFDSLM---VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM---~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~ 75 (192)
+|+++|-+-|- +=||..+ .|.|+.-.++++.||.+|.++=++.=-.|..-.+ + .-.||+ .|.+--.
T Consensus 105 ~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~------~-~~~d~~~v~~aaRlaa 176 (265)
T COG1830 105 DAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKD------E-YHRDADLVGYAARLAA 176 (265)
T ss_pred HHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccc------c-ccccHHHHHHHHHHHH
Confidence 57777766554 3355444 8899999999999999999998875444322111 0 123443 4556677
Q ss_pred hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHH
Q 029526 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCI 136 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i 136 (192)
+.|.|.+=+- |++ |.++.+++-+.+ ++|+|+=||+-. +++++.+.+
T Consensus 177 elGADIiK~~-------ytg-----~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~ 223 (265)
T COG1830 177 ELGADIIKTK-------YTG-----DPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMV 223 (265)
T ss_pred HhcCCeEeec-------CCC-----ChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHH
Confidence 8999998875 765 347777777766 799999999999 777766643
No 157
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=93.66 E-value=0.43 Score=40.42 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.==+ +. . ....+++.+++|.+.+ .+|+-+=||-.. .|++++++..|+.|+-
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd--~~-~--~~~~n~~~i~~i~~~~---~~~v~vgGGir~-~edv~~~l~~Ga~~vi 105 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLD--AI-M--GRGDNDEAIRELAAAW---PLGLWVDGGIRS-LENAQEWLKRGASRVI 105 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCc--cc-c--CCCccHHHHHHHHHhC---CCCEEEecCcCC-HHHHHHHHHcCCCeEE
Confidence 489988888888899999876211 11 1 1345789999998877 699888775443 4889999999999999
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|...
T Consensus 106 igt~~~ 111 (233)
T cd04723 106 VGTETL 111 (233)
T ss_pred Ecceec
Confidence 999864
No 158
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=93.63 E-value=0.56 Score=44.85 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=61.9
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcC--CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-H---------H
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNV--HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-A---------E 130 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~--HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~---------e 130 (192)
..-||-+..++..+.|+|.|.+===+. -|.. .-..+++.+++|.+.+ .+||-.=||--.- | |
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~---~~~~~~~~i~~i~~~~---~ip~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPL---GDLPMLEVLRRASENV---FVPLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcc---cchhHHHHHHHHHhhC---CCCEEEcCCccccccccccccchHH
Confidence 457999988888899999988631111 1111 1223588999998887 6999999976553 2 8
Q ss_pred HHHHHHhcCCeEeecchHHHH
Q 029526 131 LIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~ 151 (192)
++++..+.|+.||-|+|....
T Consensus 339 ~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 339 VASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHcCCCEEEEChHHHh
Confidence 899999999999999997643
No 159
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=93.59 E-value=1.7 Score=35.04 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=85.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------eccc----cccCCCCCcccc---------c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELGR----LSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG~----i~g~e~~~~~~~---------~ 60 (192)
++++.|-+.|-+---.++-++-.+..+++.++|+.+++.+=- ++|. ++. .+...... .
T Consensus 20 ~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~-~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 20 AALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQ-SDLPPAEARKLLGPDKII 98 (180)
T ss_dssp HHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBT-TSSSHHHHHHHHTTTSEE
T ss_pred HHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecc-cccchHHhhhhcccceEE
Confidence 578899999999999999999999999999999988744321 2222 222 11110000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...--+++|+++ ..+.|+|.+.++ .+.-- -+++.+.+.++.|+++.+.. ++|++-=| |+..+++.++.++|
T Consensus 99 g~S~h~~~e~~~-a~~~g~dYv~~g--pvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlG--GI~~~~i~~l~~~G 170 (180)
T PF02581_consen 99 GASCHSLEEARE-AEELGADYVFLG--PVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALG--GITPENIPELREAG 170 (180)
T ss_dssp EEEESSHHHHHH-HHHCTTSEEEEE--TSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEES--S--TTTHHHHHHTT
T ss_pred EeecCcHHHHHH-hhhcCCCEEEEC--CccCCCCCccccccCHHHHHHHHHhC---CCCEEEEc--CCCHHHHHHHHHcC
Confidence 112346777665 557899998854 44211 12223668899999998888 69999999 55678899999998
Q ss_pred CeEee
Q 029526 140 VRKFN 144 (192)
Q Consensus 140 i~KIN 144 (192)
..-+=
T Consensus 171 a~gvA 175 (180)
T PF02581_consen 171 ADGVA 175 (180)
T ss_dssp -SEEE
T ss_pred CCEEE
Confidence 76553
No 160
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.52 E-value=1.7 Score=40.97 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=79.7
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+++|-+.|-+|.++ .-.+ .+.+.++..|+. ++.|=+ |.+ .+++.++.. .+.|+|+
T Consensus 234 v~aGVd~i~~D~a~-g~~~---~~~~~i~~i~~~~~~~~vi~--g~~----------------~t~~~~~~l-~~~G~d~ 290 (475)
T TIGR01303 234 LDAGVDVLVIDTAH-GHQV---KMISAIKAVRALDLGVPIVA--GNV----------------VSAEGVRDL-LEAGANI 290 (475)
T ss_pred HHhCCCEEEEeCCC-CCcH---HHHHHHHHHHHHCCCCeEEE--ecc----------------CCHHHHHHH-HHhCCCE
Confidence 56899999999999 5554 445666666654 455444 322 455666664 4789999
Q ss_pred EEEecC-----cCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIG-----NVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiG-----t~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|.+| |.. .|.+ +.|. +.-+-+..+..+..++|++-.||--.|.+ +.||+.+|..=+=+++.|.
T Consensus 291 i~vg~g~Gs~~ttr-~~~~~g~~~--~~a~~~~~~~~~~~~~~viadGgi~~~~d-i~kala~GA~~vm~g~~~a 361 (475)
T TIGR01303 291 IKVGVGPGAMCTTR-MMTGVGRPQ--FSAVLECAAEARKLGGHVWADGGVRHPRD-VALALAAGASNVMVGSWFA 361 (475)
T ss_pred EEECCcCCccccCc-cccCCCCch--HHHHHHHHHHHHHcCCcEEEeCCCCCHHH-HHHHHHcCCCEEeechhhc
Confidence 999998 222 2332 2243 22222332222223699999999988855 9999999999999988874
No 161
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.51 E-value=1.5 Score=39.84 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=97.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEE--------Eecc----ccccCCCCCcc---------ccc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVE--------AELG----RLSGTEDGLTV---------EDY 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VE--------aElG----~i~g~e~~~~~---------~~~ 60 (192)
++++.|.+.|=+---.+|..+-+...+++.++|+.+|+.+= .++| |+|. .|-... .--
T Consensus 165 ~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aDGVHLgq-~dl~~~~aR~llg~~~iI 243 (347)
T PRK02615 165 AALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDADGVHLGQ-EDLPLAVARQLLGPEKII 243 (347)
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEEeCh-hhcCHHHHHHhcCCCCEE
Confidence 57899999999999999999999999999999998875432 1122 2221 111000 000
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
...-.+++++.+= .+.|+|.+.+ |.+.--- +++.+.+.++.++.+.+.+ ++|++-=| |+..+++.++.+.|
T Consensus 244 G~S~Hs~~e~~~A-~~~GaDYI~l--GPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiG--GI~~~ni~~l~~~G 315 (347)
T PRK02615 244 GRSTTNPEEMAKA-IAEGADYIGV--GPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIG--GIDKSNIPEVLQAG 315 (347)
T ss_pred EEecCCHHHHHHH-HHcCCCEEEE--CCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEC--CCCHHHHHHHHHcC
Confidence 1123568887764 3569999765 4443211 1223457889999998876 69999999 56789999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
..-|=+.+.+.
T Consensus 316 a~gVAvisaI~ 326 (347)
T PRK02615 316 AKRVAVVRAIM 326 (347)
T ss_pred CcEEEEeHHHh
Confidence 99999888875
No 162
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.46 E-value=1.7 Score=39.16 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred hhcCC--CEeEeeCCCCCHHHHHHHHHHHHHHHHh-C-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 4 IVLGF--DSLMVDGSHLPFKDNISHTKYISFLAHS-K-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 4 i~~GF--tSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+++|. +-|-+|.++ +.-+++. ++++.-++ + ++.|=+ | .-+++++|+. +.+.|+
T Consensus 106 v~ag~~~d~i~iD~a~-gh~~~~~---e~I~~ir~~~p~~~vi~--g----------------~V~t~e~a~~-l~~aGa 162 (326)
T PRK05458 106 AAEGLTPEYITIDIAH-GHSDSVI---NMIQHIKKHLPETFVIA--G----------------NVGTPEAVRE-LENAGA 162 (326)
T ss_pred HhcCCCCCEEEEECCC-CchHHHH---HHHHHHHhhCCCCeEEE--E----------------ecCCHHHHHH-HHHcCc
Confidence 56655 889999998 4333333 22333232 2 233221 1 1347788876 557999
Q ss_pred cEEEEecCcCCCCCC----C-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 80 DALAVCIGNVHGKYP----S-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 80 D~LAvaiGt~HG~y~----~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|++.|++|--.-... + ..|...+..+.++.+.. ++|+.--||--.|.| +.||+.+|..-+=+++.+.
T Consensus 163 d~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~D-i~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 163 DATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGD-IAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred CEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHH-HHHHHHhCCCEEEechhhc
Confidence 998877543311011 1 12444455588888776 699999999887765 8899999999999998875
No 163
>PRK00915 2-isopropylmalate synthase; Validated
Probab=93.28 E-value=1.3 Score=42.01 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=82.1
Q ss_pred hcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029526 5 VLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 5 ~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
++|+.-|.+-.|.- +.+||+...++.+++|+.+|..|+ + +.|| ...|+|+.+.+++
T Consensus 90 ~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-----f-~~ed--------~~r~d~~~l~~~~ 155 (513)
T PRK00915 90 PAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-----F-SAED--------ATRTDLDFLCRVV 155 (513)
T ss_pred cCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-----E-EeCC--------CCCCCHHHHHHHH
Confidence 56776666554443 568999999999999999998774 2 2233 2468999888886
Q ss_pred hh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 75 DE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 75 ~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+. .|+|.+-++ -.=|.. .|.-=.++++.+++.++. .++||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 156 ~~~~~~Ga~~i~l~--DTvG~~---~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~ 227 (513)
T PRK00915 156 EAAIDAGATTINIP--DTVGYT---TPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVEC 227 (513)
T ss_pred HHHHHcCCCEEEEc--cCCCCC---CHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEE
Confidence 54 688876543 222222 243345566777766531 127888865 5677778888899999988753
No 164
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=93.26 E-value=1.7 Score=38.85 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=73.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCC--------CCC-----CCCCH-----HHHHHHHhhhccCCccEEeecCCC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYP--------SSG-----PNLKL-----DLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--------~~~-----p~ld~-----~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
++++.|+. +++.|+|++-|+ | ||... ... ...++ +.|.++++. ..++|+..=||--
T Consensus 191 ~~~~~a~~-L~~aGvd~I~Vs-g--~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~--~~~ipVIasGGI~ 264 (333)
T TIGR02151 191 ISKEVAKL-LADAGVSAIDVA-G--AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD--APDAPIIASGGLR 264 (333)
T ss_pred CCHHHHHH-HHHcCCCEEEEC-C--CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc--CCCCeEEEECCCC
Confidence 46777766 668999999997 3 33211 000 00222 334444441 1269999988766
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+ +++.+++.+|..=|.+++.+..+... .+ .+.+....+.+.+.++..|.+.|+.
T Consensus 265 ~~-~di~kaLalGAd~V~igr~~L~~~~~------~g-~~~v~~~i~~~~~eL~~~m~~~G~~ 319 (333)
T TIGR02151 265 TG-LDVAKAIALGADAVGMARPFLKAALD------EG-EEAVIEEIELIIEELKVAMFLTGAK 319 (333)
T ss_pred CH-HHHHHHHHhCCCeehhhHHHHHHHHh------cC-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55 55999999999999999998877642 11 2344556677888889999998875
No 165
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.25 E-value=1.2 Score=36.79 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCc
Q 029526 38 GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGV 117 (192)
Q Consensus 38 gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~i 117 (192)
+++|=+|+=.-...... -..+.+|.+..+..++-|.|+|.|- +-.+.+.+ .++.++.|++.+ ++
T Consensus 10 ~~~vIae~k~~sp~~~~------~~~~~~~~~~A~~~~~~GA~~l~v~--~~~~~~~g-----~~~~~~~i~~~v---~i 73 (217)
T cd00331 10 GLGVIAEVKRASPSKGL------IREDFDPVEIAKAYEKAGAAAISVL--TEPKYFQG-----SLEDLRAVREAV---SL 73 (217)
T ss_pred CceEEEEecCCCCCCCc------CCCCCCHHHHHHHHHHcCCCEEEEE--eCccccCC-----CHHHHHHHHHhc---CC
Confidence 47777777665322111 1235688887777888999999654 33333332 457788888887 69
Q ss_pred cEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 118 LLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 118 PLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|+++.| -.+++++++.+.+.|+.-|.+++.
T Consensus 74 Pi~~~~-~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 74 PVLRKD-FIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred CEEECC-eecCHHHHHHHHHcCCCEEEEeec
Confidence 999754 567777999999999999997653
No 166
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=93.22 E-value=0.54 Score=40.90 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCH-HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 65 TDV-NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~p-eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.|| .+..+..++.|.++|=+- -. + +. |++++++|.+.+ ++|+..=||-- .|++++.++.|+.|+
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvV------DL-g--~~-n~~~i~~i~~~~---~~~v~vGGGIr--~e~v~~~l~aGa~rV 101 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVI------ML-G--PN-NDDAAKEALHAY---PGGLQVGGGIN--DTNAQEWLDEGASHV 101 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE------EC-C--CC-cHHHHHHHHHhC---CCCEEEeCCcC--HHHHHHHHHcCCCEE
Confidence 356 665555556776655432 00 2 33 999999998887 69999999765 499999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|.+.
T Consensus 102 vIGS~av 108 (253)
T TIGR02129 102 IVTSWLF 108 (253)
T ss_pred EECcHHH
Confidence 9999764
No 167
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.13 E-value=3.1 Score=36.68 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=86.3
Q ss_pred hhhhcCCCEeEeeCCCC-----------CHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHH
Q 029526 2 EAIVLGFDSLMVDGSHL-----------PFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-----------~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee 69 (192)
++.++||+-|=+-.+.- .+..|.+...++++..++ .+++|-.=+- + |.++ ...+..+
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir-~-g~~~---------~~~~~~~ 151 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR-I-GWDD---------AHINAVE 151 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE-c-ccCC---------CcchHHH
Confidence 45567888886654421 145677888888887764 3444433221 1 1111 0123445
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH-hcCCeEeecchH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI-ERGVRKFNVNTE 148 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i-~~Gi~KINi~T~ 148 (192)
..+.+++.|+|.|.+.-.+..+.|++ ..+++.+++|++.+ ++|++.=||-..+++ +.+++ ..|+.=|-+++.
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~---~~~~~~i~~i~~~~---~ipvi~nGgI~~~~d-a~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSG---EANWDIIARVKQAV---RIPVIGNGDIFSPED-AKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCC---chhHHHHHHHHHcC---CCcEEEeCCCCCHHH-HHHHHHhhCCCEEEEChh
Confidence 55557889999998866666666653 24789999999888 699999888876655 77777 578888888877
Q ss_pred HH
Q 029526 149 VR 150 (192)
Q Consensus 149 l~ 150 (192)
+.
T Consensus 225 ~l 226 (319)
T TIGR00737 225 AL 226 (319)
T ss_pred hh
Confidence 64
No 168
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.11 E-value=0.47 Score=40.35 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhh-hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 65 TDVNQAEEFIDE-TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||.+..++..+ .|+|.|-|.= .=|.- . .-..+++.+++|.+.+ .+|+-+=||-. +.|++++.+..|+.|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivD--Ld~a~-~-~~~~n~~~I~~i~~~~---~~pi~vGGGIr-s~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVD--LIGAK-A-QHAREFDYIKSLRRLT---TKDIEVGGGIR-TKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEE--Ccccc-c-CCcchHHHHHHHHhhc---CCeEEEcCCcC-CHHHHHHHHHCCCCEE
Confidence 488665555555 7999888751 11111 1 2346899999999877 69988888766 4567999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|...
T Consensus 103 vigt~a~ 109 (234)
T PRK13587 103 IVGTKGI 109 (234)
T ss_pred EECchHh
Confidence 9999864
No 169
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=93.09 E-value=2.8 Score=38.20 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhhhcCCCEeEe---eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH---HHHHHhh
Q 029526 2 EAIVLGFDSLMV---DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN---QAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~---D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe---ea~~Fv~ 75 (192)
+|+++|.+-|.+ =||. ...++++.-.++++-||++|++|=+..=--|.. .. ...+.-|+|+ -|.+-..
T Consensus 154 dAlrLGAdAV~~tvy~Gs~-~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~---i~--~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 154 DALRLGAVAVGATIYFGSE-ESRRQIEEISEAFEEAHELGLATVLWSYLRNSA---FK--KDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred HHHHCCCCEEEEEEecCCH-HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcc---cC--CcccccccHHHHHHHHHHHH
Confidence 689999876653 3454 336789999999999999999998853222211 11 1111235554 3445555
Q ss_pred hhCCcEEEEecCcCCCCCCC-------------CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 76 ETDIDALAVCIGNVHGKYPS-------------SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~-------------~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
+-|.|.+=+-.=+.++.++. -.-.=..++++.+-+.+-.-++|+|+=||+-.+++++-+.
T Consensus 228 ELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 228 TIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred HHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 77999998875333332211 0001123344444443301159999999999888665443
No 170
>PLN02979 glycolate oxidase
Probab=93.09 E-value=3 Score=38.24 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=80.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|++ +.+.|||.+-||- ||.-..+...--++.|-+|++.+.. .+|+.+.||--.+-| +-||+.+|-.=+-
T Consensus 232 ~~~~dA~~-a~~~Gvd~I~Vsn---hGGrqld~~p~t~~~L~ei~~~~~~-~~~Vi~dGGIr~G~D-i~KALALGAdaV~ 305 (366)
T PLN02979 232 LTGEDARI-AIQAGAAGIIVSN---HGARQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD-VFKALALGASGIF 305 (366)
T ss_pred CCHHHHHH-HHhcCCCEEEECC---CCcCCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH-HHHHHHcCCCEEE
Confidence 47888887 4478999887763 4432211111136788888877632 599999999877665 8899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++....- .+-.....+.+++.++..|.++|+.
T Consensus 306 iGrp~L~~la~~G-------~~Gv~~~l~~l~~El~~~m~l~G~~ 343 (366)
T PLN02979 306 IGRPVVFSLAAEG-------EAGVRKVLQMLRDEFELTMALSGCR 343 (366)
T ss_pred EcHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987765321 1224566788888888899998864
No 171
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.94 E-value=3.7 Score=37.07 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCC--------CC----------CCCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKY--------PS----------SGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------~~----------~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
+++++|+. +.+.|||.+-|+- ||.. .. ++..--++.|.++++.. .++|+..=||-.
T Consensus 198 ~s~~~a~~-l~~~Gvd~I~Vsg---~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~ 271 (352)
T PRK05437 198 ISKETAKR-LADAGVKAIDVAG---AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIR 271 (352)
T ss_pred CcHHHHHH-HHHcCCCEEEECC---CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCC
Confidence 55777765 5578999999853 3421 10 00000134566666652 169999988877
Q ss_pred CCHHHHHHHHhcCCeEeecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 127 ~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
.+ .++.+++.+|..=+.++|.+..+.... . ..-+....+.+.+.++..|...|+.
T Consensus 272 ~~-~dv~k~l~~GAd~v~ig~~~l~~~~~~------g-~~~v~~~i~~~~~eL~~~m~~~G~~ 326 (352)
T PRK05437 272 NG-LDIAKALALGADAVGMAGPFLKAALEG------G-EEAVIELIEQWIEELKIAMFLTGAK 326 (352)
T ss_pred CH-HHHHHHHHcCCCEEEEhHHHHHHHHhc------c-HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66 458999999999999999998775321 0 1223344566778888888888864
No 172
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=92.89 E-value=0.72 Score=41.16 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=75.0
Q ss_pred ccCCCHHHHHHHhhh--------------h-CCcEEEEe--cCcCCCCCCCCCCCCC---HHHHHHHHhhhccC-CccEE
Q 029526 62 AKLTDVNQAEEFIDE--------------T-DIDALAVC--IGNVHGKYPSSGPNLK---LDLLKDLHALSSKK-GVLLV 120 (192)
Q Consensus 62 ~~~T~peea~~Fv~~--------------T-gvD~LAva--iGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~-~iPLV 120 (192)
.++++||.+.++++. . |+|.+-+. .|+.=|.+-+ ....+ +..+++|-+.++.. ++|.+
T Consensus 138 ~l~~~PE~v~~lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LS-pe~f~efv~P~~krIi~~ik~~~g~pii 216 (321)
T cd03309 138 ALYEEPEAAHELFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFIS-PATFREFILPRMQRIFDFLRSNTSALIV 216 (321)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccC-HHHHHHHHHHHHHHHHHHHHhccCCceE
Confidence 357899988887752 3 88877652 1222111211 01111 22335555555433 57999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHH---HHHHHHHhcC-----CCCChHHHHHHH-HHHHHHHHHHHHHHhCCC
Q 029526 121 LHGASGLSAELIKGCIERGVRKFNVNTEV---RKAYMDSLSR-----PKSDLIHLMASA-KEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l---~~a~~~~~~~-----~~~~~~~~~~~~-~~~~~~~v~~~i~~~gs~ 189 (192)
+|..- .....+...+++|+..+|++... ..+ .+.+.. .+.|+..++... .+.+++.+++.++.+|..
T Consensus 217 lH~cG-~~~~~l~~~~e~g~dvl~~d~~~~dl~ea-k~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~ 292 (321)
T cd03309 217 HHSCG-AAASLVPSMAEMGVDSWNVVMTANNTAEL-RRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPI 292 (321)
T ss_pred EEeCC-CcHHHHHHHHHcCCCEEEecCCCCCHHHH-HHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 99664 44557888899999999986543 222 222221 244776555444 588999999999998863
No 173
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=92.84 E-value=0.88 Score=38.36 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++.+..++++.-|+-.|--.|.+. |. ....|+++++++.+.+ ++|+..-||-+.+++ ++++.+.|+.++=
T Consensus 141 ~~~~~~~~~~~~~g~~ii~tdI~~d-Gt----~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed-~~~l~~~Ga~~vi 211 (221)
T TIGR00734 141 ESLEEVRDFLNSFDYGLIVLDIHSV-GT----MKGPNLELLTKTLELS---EHPVMLGGGISGVED-LELLKEMGVSAVL 211 (221)
T ss_pred ccHHHHHHHHHhcCCEEEEEECCcc-cc----CCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHH-HHHHHHCCCCEEE
Confidence 4666666666655554444455444 22 2345899999999887 699999999997766 6778889999999
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.+.
T Consensus 212 vgsal~ 217 (221)
T TIGR00734 212 VATAVH 217 (221)
T ss_pred EhHHhh
Confidence 998874
No 174
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.84 E-value=0.74 Score=39.33 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|.+..++.++.|+|.|-+.= ..-... .-..+++.+++|++.+ ++|+.+=||-.. .+++++++..|+.++-
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~D-l~~~~~---~~~~n~~~i~~i~~~~---~~pv~~~GGi~s-~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLD-ITASSE---GRTTMIDVVERTAETV---FIPLTVGGGIKS-IEDVDKLLRAGADKVS 101 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEc-CCcccc---cChhhHHHHHHHHHhc---CCCEEEECCCCC-HHHHHHHHHcCCCEEE
Confidence 4998888888889999988751 111111 2346899999999888 699999997664 4669999999999999
Q ss_pred cchHHHH
Q 029526 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
++|.+..
T Consensus 102 vgt~~~~ 108 (254)
T TIGR00735 102 INTAAVK 108 (254)
T ss_pred EChhHhh
Confidence 9998743
No 175
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.83 E-value=0.29 Score=38.36 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=37.2
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCC--CCCC----CCCCCHHHHHHHHhhhcc
Q 029526 66 DVNQAEEFIDETDIDALAVCIGNVHGK--YPSS----GPNLKLDLLKDLHALSSK 114 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~----~p~ld~~~L~~I~~~~~~ 114 (192)
||++..+.+++++||++-+-.|.-||. |+.+ .|.|..|+|.++-++..+
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~ 55 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHE 55 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHH
Confidence 789999999999999999988888875 4432 467777777766555443
No 176
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.81 E-value=3.4 Score=37.84 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.++++|++-+ +.|||.+-||- ||.-..+...--++.|.+|.+.+.. .+|+.+=||--.+-| +-||+.+|..=+-
T Consensus 233 ~~~~dA~~a~-~~Gvd~I~Vsn---hGGrqld~~~~t~~~L~ei~~av~~-~~~vi~dGGIr~G~D-v~KALALGA~aV~ 306 (367)
T PLN02493 233 LTGEDARIAI-QAGAAGIIVSN---HGARQLDYVPATISALEEVVKATQG-RIPVFLDGGVRRGTD-VFKALALGASGIF 306 (367)
T ss_pred CCHHHHHHHH-HcCCCEEEECC---CCCCCCCCchhHHHHHHHHHHHhCC-CCeEEEeCCcCcHHH-HHHHHHcCCCEEE
Confidence 4688888744 78999887763 4443211111137788888877632 599999998876655 8899999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+.++....- .+-.....+.+++.++..|.++|+.
T Consensus 307 iGr~~l~~l~~~G-------~~gv~~~l~~l~~el~~~m~l~G~~ 344 (367)
T PLN02493 307 IGRPVVFSLAAEG-------EAGVRKVLQMLRDEFELTMALSGCR 344 (367)
T ss_pred EcHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987765321 1224566788888888899998864
No 177
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.79 E-value=0.85 Score=38.96 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=81.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEec--cccccCCC-CCccccc-cccCCCHHHHHHHhhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAEL--GRLSGTED-GLTVEDY-EAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaEl--G~i~g~e~-~~~~~~~-~~~~T~peea~~Fv~~T 77 (192)
+++.+|.+.|++-.+.+ +|....+++.+....--+.+--.+ |.+.+... .+....+ +..-.++.+..+.+++.
T Consensus 91 ~~~~~Ga~~vivgt~~~---~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~ 167 (254)
T TIGR00735 91 KLLRAGADKVSINTAAV---KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL 167 (254)
T ss_pred HHHHcCCCEEEEChhHh---hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc
Confidence 46778999998854443 355555555444311113333322 11100000 0000000 11223455666666789
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
|+|.+-++-=+..| + .+..|++.++++.+.+ ++|+...||-..+++ +.++.+.| +.=|-++|.+
T Consensus 168 G~~~iivt~i~~~g-~---~~g~~~~~~~~i~~~~---~ipvia~GGi~s~~d-i~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 168 GAGEILLTSMDKDG-T---KSGYDLELTKAVSEAV---KIPVIASGGAGKPEH-FYEAFTKGKADAALAASVF 232 (254)
T ss_pred CCCEEEEeCcCccc-C---CCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHH-HHHHHHcCCcceeeEhHHH
Confidence 99988775333323 2 2456899999999887 699999999886655 77888877 9888888876
No 178
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.75 E-value=2.8 Score=37.24 Aligned_cols=113 Identities=9% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCC
Q 029526 20 FKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGP 98 (192)
Q Consensus 20 ~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p 98 (192)
+-.|-..++++++-.+. .+++|-.=+- + |..+ ...+..+..+.+++.|+|+|.+.-+|.-+.|.+
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR-~-G~~~---------~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G--- 179 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIR-T-GWAP---------EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--- 179 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEE-c-cccC---------CcchHHHHHHHHHHhCCCEEEEecCccccccCC---
Confidence 45566677777766653 3444433332 1 1110 012334444556789999998877776666754
Q ss_pred CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHHH
Q 029526 99 NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEVR 150 (192)
Q Consensus 99 ~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l~ 150 (192)
..|++.+++|++.+ ++|++-=||-..+ ++++++++ .|+.=|=+++.+.
T Consensus 180 ~a~~~~i~~ik~~~---~iPVI~nGgI~s~-~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 180 EAEYDSIRAVKQKV---SIPVIANGDITDP-LKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred CcChHHHHHHHHhc---CCcEEEeCCCCCH-HHHHHHHhccCCCEEEEChHhh
Confidence 24889999999988 6999988877655 55788886 6898888887773
No 179
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=92.73 E-value=3.1 Score=33.66 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=69.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|.++|.+.|-+-+... + .+.++++.++++|+.+ -++ + ...|..+..+++.. ++|.
T Consensus 74 ~~~~~gadgv~vh~~~~---~---~~~~~~~~~~~~g~~~--~~~-~-------------~~~t~~e~~~~~~~--~~d~ 129 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS---E---HIHRLLQLIKDLGAKA--GIV-L-------------NPATPLEFLEYVLP--DVDL 129 (210)
T ss_pred HHHHcCCCEEEEccCCc---h---hHHHHHHHHHHcCCcE--EEE-E-------------CCCCCHHHHHHHHh--hCCE
Confidence 35567777755544321 1 2245556666666543 111 1 02355556666543 4687
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+. +++.+....+. .+...++.++++++.+++ .++|+++=| |+..++++++++.|+.=+-++|.+.
T Consensus 130 i~--~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~G--GI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 130 VL--LMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDG--GVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred EE--EEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC--CcCHHHHHHHHHcCCCEEEEChHHh
Confidence 54 45554322221 122233455556555432 137888877 7788999999999999999998884
No 180
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.67 E-value=3.7 Score=34.61 Aligned_cols=89 Identities=15% Similarity=0.265 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHH
Q 029526 28 KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKD 107 (192)
Q Consensus 28 k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~ 107 (192)
.+|+++|+..|+.+ +.| -.+|.|+.+= .+-|+|.+-+ |+. ..+-++.|+.
T Consensus 99 ~~v~~~~~~~~i~~------iPG-------------~~T~~E~~~A-~~~Gad~vkl--------FPa--~~~G~~~ik~ 148 (213)
T PRK06552 99 RETAKICNLYQIPY------LPG-------------CMTVTEIVTA-LEAGSEIVKL--------FPG--STLGPSFIKA 148 (213)
T ss_pred HHHHHHHHHcCCCE------ECC-------------cCCHHHHHHH-HHcCCCEEEE--------CCc--ccCCHHHHHH
Confidence 36777777766543 332 2467787774 4799999996 654 3356788899
Q ss_pred HHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 108 LHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 108 I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++.... ++|++-=| |++.+++...++.|+.=+=+++.+.
T Consensus 149 l~~~~p--~ip~~atG--GI~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 149 IKGPLP--QVNVMVTG--GVNLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HhhhCC--CCEEEEEC--CCCHHHHHHHHHCCCcEEEEchHHh
Confidence 988774 59999888 7888999999999999999999995
No 181
>PRK15452 putative protease; Provisional
Probab=92.58 E-value=1.5 Score=41.07 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=83.2
Q ss_pred hhhhcCCCEeEeeCCCCCHH---H--HHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFK---D--NISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~e---e--Ni~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
.||++|-+.|=+=+..+.+- . +...-++.+++||..|+.|-.=+=.+... + .+....+-.+++.+
T Consensus 18 aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~---------el~~~~~~l~~l~~ 87 (443)
T PRK15452 18 YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-A---------KLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-H---------HHHHHHHHHHHHHh
Confidence 58999999999854433210 0 11236788999999998876654444211 0 12222333455668
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC---CHHHHHHHHhcCCeEeecchHHHHHH
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL---SAELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~---~~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
.|||.+-|+ |+..+.-+++.. -.+-+|+++.+ ....++-.-+.|+..+.++.+|...-
T Consensus 88 ~gvDgvIV~---------------d~G~l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~E 148 (443)
T PRK15452 88 MKPDALIMS---------------DPGLIMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEE 148 (443)
T ss_pred CCCCEEEEc---------------CHHHHHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHH
Confidence 899998886 455566666543 24678888765 34566667789999999999996655
Q ss_pred HHHhc
Q 029526 154 MDSLS 158 (192)
Q Consensus 154 ~~~~~ 158 (192)
+..+.
T Consensus 149 I~~i~ 153 (443)
T PRK15452 149 IEEIR 153 (443)
T ss_pred HHHHH
Confidence 55553
No 182
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=92.58 E-value=4.9 Score=34.30 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC--CCCCCHH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS--GPNLKLD 103 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~--~p~ld~~ 103 (192)
.-+..++.||++|.-+=.||= ..-||+++.+.+++.|+|.+.+ |-.+... +...-++
T Consensus 94 TI~~~i~~A~~~~~~v~iDl~----------------~~~~~~~~~~~l~~~gvd~~~~-----H~g~D~q~~G~~~~~~ 152 (217)
T COG0269 94 TIKKAIKVAKEYGKEVQIDLI----------------GVWDPEQRAKWLKELGVDQVIL-----HRGRDAQAAGKSWGED 152 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEee----------------cCCCHHHHHHHHHHhCCCEEEE-----EecccHhhcCCCccHH
Confidence 346778889999865555531 1357899999999999999876 5444321 1223357
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
.|.++++..+ .++++..=| |+..+++..++..|+.=+=++..+
T Consensus 153 ~l~~ik~~~~-~g~~vAVaG--GI~~~~i~~~~~~~~~ivIvGraI 195 (217)
T COG0269 153 DLEKIKKLSD-LGAKVAVAG--GITPEDIPLFKGIGADIVIVGRAI 195 (217)
T ss_pred HHHHHHHhhc-cCceEEEec--CCCHHHHHHHhcCCCCEEEECchh
Confidence 8888888773 247899999 899999999999998877777665
No 183
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.48 E-value=0.94 Score=40.06 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=72.1
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++|||.--|+.+--++.. .++.+++ + ...||.|. .+++||.+.+ +.|+|.+-+
T Consensus 166 ~d~ilikdNHi~~~g~i~~---av~~~r~~~~~~~~I~VEv-------------------~tleea~eA~-~~GaD~I~L 222 (288)
T PRK07428 166 DDAVMIKDNHIQAAGGIGE---AITRIRQRIPYPLTIEVET-------------------ETLEQVQEAL-EYGADIIML 222 (288)
T ss_pred hheeeecHHHHHHhCCHHH---HHHHHHHhCCCCCEEEEEC-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5799998888766555333 3333333 2 35566552 3457888877 789998876
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhc--cCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSS--KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~--~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
- +..++.|+++-+..+ ...+||+-=| |+..+.+.+..+.||.-|=+++...
T Consensus 223 D-------------n~~~e~l~~av~~~~~~~~~i~leAsG--GIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 223 D-------------NMPVDLMQQAVQLIRQQNPRVKIEASG--NITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred C-------------CCCHHHHHHHHHHHHhcCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEEchhhh
Confidence 4 334566777665442 2358888888 7889999999999999998887653
No 184
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=92.33 E-value=1.3 Score=37.04 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=59.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|.++.+..++.|+|.|-+. ...+.-. ....|++.+++|.+.+ ++|+.+=||-. +.++++++.+.|+.+|
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~--dl~~~~~--~~~~n~~~~~~i~~~~---~~pv~~~ggi~-~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVL--DIDASKR--GREPLFELISNLAEEC---FMPLTVGGGIR-SLEDAKKLLSLGADKV 100 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--eCCCccc--CCCCCHHHHHHHHHhC---CCCEEEECCCC-CHHHHHHHHHcCCCEE
Confidence 3599998888899999977764 1222211 2446899999999887 69987755544 4567888999999999
Q ss_pred ecchHHHH
Q 029526 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
-++|.+..
T Consensus 101 ilg~~~l~ 108 (232)
T TIGR03572 101 SINTAALE 108 (232)
T ss_pred EEChhHhc
Confidence 99998753
No 185
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=92.31 E-value=0.17 Score=45.44 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=60.3
Q ss_pred ccCCCHHH-HHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHH---HHHHH
Q 029526 62 AKLTDVNQ-AEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAEL---IKGCI 136 (192)
Q Consensus 62 ~~~T~pee-a~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~---~~~~i 136 (192)
+.+.||-+ |++-|++-|+|++-+- |+|--- .+...|+=--+.|+++-+++ ++|+++ ||||.|+.+ |.+|.
T Consensus 147 dVmedP~eWArk~Vk~fgadmvTiHlIsTdPk-i~D~p~~EAak~lEdvLqAV---dvPiii-GGSGnpeKDpeVlekaA 221 (403)
T COG2069 147 DVMEDPGEWARKCVKKFGADMVTIHLISTDPK-IKDTPAKEAAKTLEDVLQAV---DVPIII-GGSGNPEKDPEVLEKAA 221 (403)
T ss_pred HHhhCHHHHHHHHHHHhCCceEEEEeecCCcc-ccCCCHHHHHHHHHHHHHhc---CcCEEe-cCCCCCccCHHHHHHHH
Confidence 34667855 8889999999998764 222211 11111223355677777777 699998 899999754 55554
Q ss_pred ------hcCCeEeecchHHHHHHHHHhc
Q 029526 137 ------ERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 137 ------~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
++=.+-+|.+-++....-.+++
T Consensus 222 EvaEGeRclLaSanldlDy~~ia~AA~k 249 (403)
T COG2069 222 EVAEGERCLLASANLDLDYERIAEAALK 249 (403)
T ss_pred HhhcCceEEeeccccccCHHHHHHHHHh
Confidence 3345678888888777766665
No 186
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.23 E-value=7 Score=33.86 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-++|++.+.+ -.||+| ...++++.|+++|+..= .+ -..-|+++..+... +..-++
T Consensus 112 ~~~~aGvdGvii--pDLp~e----e~~~~~~~~~~~gl~~I----~l------------vap~t~~eri~~i~-~~s~gf 168 (258)
T PRK13111 112 DAAEAGVDGLII--PDLPPE----EAEELRAAAKKHGLDLI----FL------------VAPTTTDERLKKIA-SHASGF 168 (258)
T ss_pred HHHHcCCcEEEE--CCCCHH----HHHHHHHHHHHcCCcEE----EE------------eCCCCCHHHHHHHH-HhCCCc
Confidence 578899999998 578986 45588888888875321 11 01224445555544 444455
Q ss_pred EEE-e-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHHHHH
Q 029526 82 LAV-C-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 82 LAv-a-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
+.+ + .|+ =|. ....|.--.+.+++|++.+ ++|+++ |.|+ ..++++++.+. ..=+=|+|.+-+...+
T Consensus 169 IY~vs~~Gv-TG~-~~~~~~~~~~~i~~vk~~~---~~pv~v--GfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~ 237 (258)
T PRK13111 169 VYYVSRAGV-TGA-RSADAADLAELVARLKAHT---DLPVAV--GFGISTPEQAAAIAAV-ADGVIVGSALVKIIEE 237 (258)
T ss_pred EEEEeCCCC-CCc-ccCCCccHHHHHHHHHhcC---CCcEEE--EcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHh
Confidence 543 3 343 122 1112333455788888877 699998 6788 66899998875 7788899998766543
No 187
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.17 E-value=6.6 Score=33.33 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=76.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh-CCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET-DID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T-gvD 80 (192)
++.++|.+.|.+=. +|+|- .....++.+.|+++|+.+=-++ ..-|+++..+.+++.. ++=
T Consensus 96 ~~~~~Gadgvii~d--lp~e~-~~~~~~~~~~~~~~Gl~~~~~v----------------~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 96 MARDVGADGVLFPD--LLIDY-PDDLEKYVEIIKNKGLKPVFFT----------------SPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred HHHHcCCCEEEECC--CCCCc-HHHHHHHHHHHHHcCCCEEEEE----------------CCCCCHHHHHHHHHhCCCEE
Confidence 46788888888832 34331 1135578899999887443221 1236677777777653 222
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHHHHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAY 153 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~~a~ 153 (192)
.+.+.=|| |. +- +.-=.+.++++++..+ +.|++. |+|+ ..++++++.+.|..=+=++|.+...+
T Consensus 157 ~msv~~~~--g~-~~--~~~~~~~i~~lr~~~~--~~~i~v--~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 157 YYGLRPAT--GV-PL--PVSVERNIKRVRNLVG--NKYLVV--GFGLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred EEEeCCCC--CC-Cc--hHHHHHHHHHHHHhcC--CCCEEE--eCCcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 22333233 32 11 1111234566666653 368775 5578 78999999999999999999997655
No 188
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=91.99 E-value=2.1 Score=40.68 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=80.4
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhh
Q 029526 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~T 77 (192)
+|++.|.+.+- ||+-.-. +|++ ..++.++..|..+++.|....+. ..+|+...+++ .+.
T Consensus 105 ~a~~~Gidi~RIfd~lndv--~nl~---~ai~~vk~ag~~~~~~i~yt~sp------------~~t~e~~~~~a~~l~~~ 167 (499)
T PRK12330 105 KSAENGMDVFRVFDALNDP--RNLE---HAMKAVKKVGKHAQGTICYTVSP------------IHTVEGFVEQAKRLLDM 167 (499)
T ss_pred HHHHcCCCEEEEEecCChH--HHHH---HHHHHHHHhCCeEEEEEEEecCC------------CCCHHHHHHHHHHHHHc
Confidence 57888988874 5554332 5554 55667777888899988776431 12555555544 357
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|.++ -.=|.- .|.-=.++++.|++.+. .++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 168 Gad~I~Ik--DtaGll---~P~~~~~LV~~Lk~~~~-~~ipI~~H~Hnt~GlA~An~laAieAGad~vDt 231 (499)
T PRK12330 168 GADSICIK--DMAALL---KPQPAYDIVKGIKEACG-EDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDT 231 (499)
T ss_pred CCCEEEeC--CCccCC---CHHHHHHHHHHHHHhCC-CCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEe
Confidence 99988764 332332 25445667778877662 137776665 6899999999999999988754
No 189
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.80 E-value=6.3 Score=33.66 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=81.7
Q ss_pred hhhhcCCCEeEeeC-------------CCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCH
Q 029526 2 EAIVLGFDSLMVDG-------------SHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67 (192)
Q Consensus 2 ~ai~~GFtSVM~D~-------------S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p 67 (192)
+.+++|...|.+.. ..+|.||-+++.+.+++.+.. -++.|=+=.-.....+ ...
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~------------~~~ 159 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE------------EGL 159 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC------------CCH
Confidence 45678999999833 235899999999998888876 3444444322211000 123
Q ss_pred HHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 68 NQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 68 eea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
++|.+- ..+.|.|++-|- | |. +.+-+++|.+.. +.||++--..+...-.+..+.++|++-+=
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~-----~------~~-~~~~~~~~~~~~---~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVE-----G------LK-DPEEIRAFAEAP---DVPLNVNMTPGGNLLTVAELAELGVRRVS 224 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeC-----C------CC-CHHHHHHHHhcC---CCCEEEEecCCCCCCCHHHHHHCCCeEEE
Confidence 444433 236799998762 1 22 566677776665 79999876544311224444566999999
Q ss_pred cchHHHHHHHHHhc
Q 029526 145 VNTEVRKAYMDSLS 158 (192)
Q Consensus 145 i~T~l~~a~~~~~~ 158 (192)
++..+..+...+++
T Consensus 225 ~~~~~~~~a~~a~~ 238 (243)
T cd00377 225 YGLALLRAAAKAMR 238 (243)
T ss_pred EChHHHHHHHHHHH
Confidence 99988877776654
No 190
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=91.79 E-value=1.4 Score=45.73 Aligned_cols=125 Identities=20% Similarity=0.266 Sum_probs=82.4
Q ss_pred hhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhC
Q 029526 3 AIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETD 78 (192)
Q Consensus 3 ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~Tg 78 (192)
|.+.|.+.+= ||+ |..-+|+ +..++.+++.|..+|+-|=..|+..|.. ....+++-..++ +.+.|
T Consensus 634 ~~~~GidifrifD~--lN~~~n~---~~~~~~~~~~g~~~~~~i~yt~~~~d~~------~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 634 AAQGGIDIFRVFDS--LNWVENM---RVGMDAVAEAGKVVEAAICYTGDILDPA------RPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred HHHcCCCEEEECcc--CcCHHHH---HHHHHHHHHcCCEEEEEEEEeccCCCcC------CCCCCHHHHHHHHHHHHHcC
Confidence 4555655443 333 3334444 5566777889999999998887544432 123455533333 45689
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeecc
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|.|+++ -.=|.- .|.-=.++++.|++.+ ++||-+|. .+|+.-...-+|++.|+.-|...
T Consensus 703 ad~I~ik--Dt~Gll---~P~~~~~Lv~~lk~~~---~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a 764 (1143)
T TIGR01235 703 AHILGIK--DMAGLL---KPAAAKLLIKALREKT---DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA 764 (1143)
T ss_pred CCEEEEC--CCcCCc---CHHHHHHHHHHHHHhc---CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence 9988764 333433 2544567778888877 57777665 68999999999999999998874
No 191
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.73 E-value=1.4 Score=37.76 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=58.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..||.+..++....|+|.|=+. ...+.-. .-..|++++++|.+.+ ++|+.+=||-. +.++++++...|+.+|
T Consensus 29 ~~dp~~~a~~~~~~g~~~l~i~--Dl~~~~~--~~~~n~~~i~~i~~~~---~~pv~~gGGi~-s~~d~~~l~~~G~~~v 100 (258)
T PRK01033 29 IGDPINAVRIFNEKEVDELIVL--DIDASKR--GSEPNYELIENLASEC---FMPLCYGGGIK-TLEQAKKIFSLGVEKV 100 (258)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE--ECCCCcC--CCcccHHHHHHHHHhC---CCCEEECCCCC-CHHHHHHHHHCCCCEE
Confidence 4699999999999999887764 1111111 1235899999999887 69987777555 4467999999999999
Q ss_pred ecchHH
Q 029526 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
-++|.+
T Consensus 101 vigs~~ 106 (258)
T PRK01033 101 SINTAA 106 (258)
T ss_pred EEChHH
Confidence 999976
No 192
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.59 E-value=1.1 Score=38.00 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.+|.+..++.++. +|.|=+ +-- =|.-. ....|++++++|.+.+ ++|+-.=||-... |+++++.+.|+.|+
T Consensus 29 ~~dp~~~a~~~~~~-~~~l~i-vDl-dga~~--g~~~n~~~i~~i~~~~---~~pv~~gGGIrs~-edv~~l~~~G~~~v 99 (228)
T PRK04128 29 YGDPVEIALRFSEY-VDKIHV-VDL-DGAFE--GKPKNLDVVKNIIRET---GLKVQVGGGLRTY-ESIKDAYEIGVENV 99 (228)
T ss_pred CCCHHHHHHHHHHh-CCEEEE-EEC-cchhc--CCcchHHHHHHHHhhC---CCCEEEcCCCCCH-HHHHHHHHCCCCEE
Confidence 45998877777666 886665 211 12111 2346899999998877 6999999987754 56999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
-++|...
T Consensus 100 ivGtaa~ 106 (228)
T PRK04128 100 IIGTKAF 106 (228)
T ss_pred EECchhc
Confidence 9999865
No 193
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=91.51 E-value=3.6 Score=36.37 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=74.5
Q ss_pred hhhhcCCCEeEeeCCCCC-----HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLP-----FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~-----~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
++++.||+.+=+-..+-+ +++.++..+.+.+.+.. ++.+=.+. + ..+ ++++|.+|+++
T Consensus 149 ~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~-~~~l~vDa------N---------~~~-~~~~a~~~~~~ 211 (357)
T cd03316 149 RAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP-DVDLMVDA------N---------GRW-DLAEAIRLARA 211 (357)
T ss_pred HHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC-CCEEEEEC------C---------CCC-CHHHHHHHHHH
Confidence 467889999988776655 56667666666554432 22221110 1 023 68999999876
Q ss_pred h---CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029526 77 T---DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 77 T---gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
. +++++-- + -|.-|++.+++|++.+ ++|+++ |.|=...++++++++.| +.-||+....
T Consensus 212 l~~~~i~~iEq---------P--~~~~~~~~~~~l~~~~---~ipi~~-dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 212 LEEYDLFWFEE---------P--VPPDDLEGLARLRQAT---SVPIAA-GENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred hCccCCCeEcC---------C--CCccCHHHHHHHHHhC---CCCEEe-ccccccHHHHHHHHHhCCCCEEecCccc
Confidence 4 4444321 1 2334789999999987 699887 55666778899999866 5567775443
No 194
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.34 E-value=10 Score=35.54 Aligned_cols=143 Identities=14% Similarity=0.061 Sum_probs=98.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
+++++|-+.|=+=--.++-++-.+..+++.++|+.+|+.+=- ++| |+| .+|-..... .
T Consensus 225 ~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVHLG-QeDL~~~~aR~ilg~~~iI 303 (437)
T PRK12290 225 RLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVHLG-QEDLEEANLAQLTDAGIRL 303 (437)
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEEcC-hHHcchhhhhhhcCCCCEE
Confidence 688999999999877888888889999999999988876633 333 343 232111000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCC-CCC-CCCCCCHHHHHHHHhhhcc------CCccEEeecCCCCCHHHH
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGK-YPS-SGPNLKLDLLKDLHALSSK------KGVLLVLHGASGLSAELI 132 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~-~~p~ld~~~L~~I~~~~~~------~~iPLVlHGgSG~~~e~~ 132 (192)
+..--+++|+.+ ..+-|+|.++++ -+.=- -|+ ..|.+-+++|+++.+.++. .++|+|-=| |+..+++
T Consensus 304 GvStHs~eEl~~-A~~~gaDYI~lG--PIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG--GI~~~Ni 378 (437)
T PRK12290 304 GLSTHGYYELLR-IVQIQPSYIALG--HIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG--GIDQSNA 378 (437)
T ss_pred EEecCCHHHHHH-HhhcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC--CcCHHHH
Confidence 111236778766 446799999854 33211 011 1255889999988877631 259999999 8899999
Q ss_pred HHHHhcCCeEeecchHHH
Q 029526 133 KGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 133 ~~~i~~Gi~KINi~T~l~ 150 (192)
..+.+.|+.=|=+-+.+.
T Consensus 379 ~~vl~aGa~GVAVVSAI~ 396 (437)
T PRK12290 379 EQVWQCGVSSLAVVRAIT 396 (437)
T ss_pred HHHHHcCCCEEEEehHhh
Confidence 999999999998887774
No 195
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=91.33 E-value=0.59 Score=40.27 Aligned_cols=136 Identities=13% Similarity=0.278 Sum_probs=78.6
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--C---CeE--E-Eeccccc----cCCCCCccccccccCCCH-
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--G---MLV--E-AELGRLS----GTEDGLTVEDYEAKLTDV- 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--g---v~V--E-aElG~i~----g~e~~~~~~~~~~~~T~p- 67 (192)
++++|+|+..||+ |.=+|.+..+++|+.|+-- | +.- = .-.|... ..++.. ..-.+.-+|
T Consensus 78 ~r~LD~Ga~gIiv-----P~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~---~vi~~IEt~~ 149 (249)
T TIGR03239 78 KRLLDIGFYNFLI-----PFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNI---TVLVQIESQK 149 (249)
T ss_pred HHHhcCCCCEEEe-----cCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhcccc---EEEEEECCHH
Confidence 4789999999986 9999999999999999832 1 110 0 0001000 000000 001123344
Q ss_pred --HHHHHHhhhhCCcEEEEecCcC-----CCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 68 --NQAEEFIDETDIDALAVCIGNV-----HGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 68 --eea~~Fv~~TgvD~LAvaiGt~-----HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
+.+.++++--|||.|- ||.. -|.+.. ..|.+.- .++++-...+..++|.-++.+ +.++.++.++.|
T Consensus 150 av~n~~eI~av~gvd~l~--iG~~DLs~slG~~~~~~~~~v~~-a~~~v~~aa~a~G~~~g~~~~---~~~~~~~~~~~G 223 (249)
T TIGR03239 150 GVDNVDEIAAVDGVDGIF--VGPSDLAAALGHLGNPNHPDVQK-AIRHIFDRAAAHGKPCGILAP---VEADARRYLEWG 223 (249)
T ss_pred HHHhHHHHhCCCCCCEEE--EChHHHHHHcCCCCCCCCHHHHH-HHHHHHHHHHHcCCCEEEcCC---CHHHHHHHHHcC
Confidence 4456666666899665 4431 222211 1133222 223344444445788866654 448999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
++=+.+++|..
T Consensus 224 ~~~~~~~~D~~ 234 (249)
T TIGR03239 224 ATFVAVGSDLG 234 (249)
T ss_pred CCEEEEhHHHH
Confidence 99999999975
No 196
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=91.23 E-value=7.2 Score=35.36 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=78.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|++|++.+ +.|||.+=|| -||...-.+..-=++.|-+|++.++ .++|+-+=||--.+- |+-|++.+|..=+=
T Consensus 234 ~~~~da~~~~-~~G~~~i~vs---~hGGr~~d~~~~~~~~L~~i~~~~~-~~~~i~~dgGir~g~-Dv~kalaLGA~~v~ 307 (356)
T PF01070_consen 234 LSPEDAKRAV-DAGVDGIDVS---NHGGRQLDWGPPTIDALPEIRAAVG-DDIPIIADGGIRRGL-DVAKALALGADAVG 307 (356)
T ss_dssp -SHHHHHHHH-HTT-SEEEEE---SGTGTSSTTS-BHHHHHHHHHHHHT-TSSEEEEESS--SHH-HHHHHHHTT-SEEE
T ss_pred ccHHHHHHHH-hcCCCEEEec---CCCcccCccccccccccHHHHhhhc-CCeeEEEeCCCCCHH-HHHHHHHcCCCeEE
Confidence 5778887744 7899988877 3655432222334778899999773 259999999876554 58999999999999
Q ss_pred cchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 145 VNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 145 i~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
++-++.++....= .+-.....+.+++.++..|.++|+.
T Consensus 308 igr~~l~~l~~~g-------~~gv~~~~~~l~~el~~~m~l~G~~ 345 (356)
T PF01070_consen 308 IGRPFLYALAAGG-------EEGVERVLEILKEELKRAMFLLGAR 345 (356)
T ss_dssp ESHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred EccHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999988774321 2334556778899999999999975
No 197
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=91.20 E-value=0.74 Score=38.86 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
...||.+..+..+..|+|.|-+.= .=|.-. ...-+++.|++|.+.+ ++|+-+=||-- +.+++++..+.|+.|
T Consensus 27 ~~~dP~~~a~~~~~~g~~~l~ivD--Ldaa~~--g~~~n~~~i~~i~~~~---~~~i~vgGGIr-s~ed~~~ll~~Ga~~ 98 (229)
T PF00977_consen 27 YSGDPVEVAKAFNEQGADELHIVD--LDAAKE--GRGSNLELIKEIAKET---GIPIQVGGGIR-SIEDAERLLDAGADR 98 (229)
T ss_dssp ECCCHHHHHHHHHHTT-SEEEEEE--HHHHCC--THHHHHHHHHHHHHHS---SSEEEEESSE--SHHHHHHHHHTT-SE
T ss_pred ECcCHHHHHHHHHHcCCCEEEEEE--ccCccc--CchhHHHHHHHHHhcC---CccEEEeCccC-cHHHHHHHHHhCCCE
Confidence 458998877767999999998751 101111 1335788899998887 69999999877 677899999999999
Q ss_pred eecchHHHH
Q 029526 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
+-++|....
T Consensus 99 Vvigt~~~~ 107 (229)
T PF00977_consen 99 VVIGTEALE 107 (229)
T ss_dssp EEESHHHHH
T ss_pred EEeChHHhh
Confidence 999998653
No 198
>PLN02411 12-oxophytodienoate reductase
Probab=91.11 E-value=5.2 Score=36.64 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=80.8
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC-CCeEEEecc-ccccCCCCCccc
Q 029526 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK-GMLVEAELG-RLSGTEDGLTVE 58 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG-~i~g~e~~~~~~ 58 (192)
++|.++||+-|=|=|.|- ++|.=.+...||++-.++. |-. - || +|.+.++.....
T Consensus 172 ~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d--~-vgvRiS~~~~~~~~~ 248 (391)
T PLN02411 172 LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGAD--R-VGVRVSPAIDHLDAT 248 (391)
T ss_pred HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC--e-EEEEEcccccccCCC
Confidence 479999999999988873 5788899999999888753 311 1 33 122222111000
Q ss_pred cccccCCCHHHH---HHHhhh----h--CCcEEEEecCcCC--CCCCCC--CCC-CCHHHHHHHHhhhccCCccEEeecC
Q 029526 59 DYEAKLTDVNQA---EEFIDE----T--DIDALAVCIGNVH--GKYPSS--GPN-LKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 59 ~~~~~~T~peea---~~Fv~~----T--gvD~LAvaiGt~H--G~y~~~--~p~-ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
. ..+ .++. .+.+++ . |+|+|-|+.|+.. +..... .+. ...+..++|++.+ ++|+..-|+
T Consensus 249 ~---~~~-~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v---~~pvi~~G~ 321 (391)
T PLN02411 249 D---SDP-LNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY---QGTFMCSGG 321 (391)
T ss_pred C---Ccc-hhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc---CCCEEEECC
Confidence 0 000 1222 222332 2 5999999998632 111100 011 1124568899888 699999998
Q ss_pred CCCCHHHHHHHHhcC-CeEeecchHH
Q 029526 125 SGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 125 SG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
- ..++-.++++.| +--|-++..+
T Consensus 322 i--~~~~a~~~l~~g~aDlV~~gR~~ 345 (391)
T PLN02411 322 F--TRELGMQAVQQGDADLVSYGRLF 345 (391)
T ss_pred C--CHHHHHHHHHcCCCCEEEECHHH
Confidence 5 457788899988 4555555544
No 199
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=91.05 E-value=1.2 Score=39.67 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=82.3
Q ss_pred ChhhhcCCCEeEeeCCCC--------------------CHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSHL--------------------PFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l--------------------~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~ 57 (192)
++|.++||+-|.|-+.|- ++|.=.+...||++-.++. +..|--= +... +....
T Consensus 156 ~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~R---ls~~-~~~~~ 231 (341)
T PF00724_consen 156 RRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVR---LSPD-DFVEG 231 (341)
T ss_dssp HHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEE---EETT-CSSTT
T ss_pred HHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEE---Eeee-cccCC
Confidence 378999999999999873 5777788899999988863 2222211 1111 11110
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcC-CCCC----CCC--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029526 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNV-HGKY----PSS--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y----~~~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
...+.+..+..+.+++.++|++.++.|+. |-.. ... .+....+..+.|++.+ ++|++.-|+-..| +
T Consensus 232 ---g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~---~~pvi~~G~i~~~-~ 304 (341)
T PF00724_consen 232 ---GITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV---KIPVIGVGGIRTP-E 304 (341)
T ss_dssp ---SHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH---SSEEEEESSTTHH-H
T ss_pred ---CCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc---CceEEEEeeecch-h
Confidence 00112223446667889999998876653 2111 110 2334567788899888 6998777653333 3
Q ss_pred HHHHHHhcC-CeEeecchHH
Q 029526 131 LIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 131 ~~~~~i~~G-i~KINi~T~l 149 (192)
+..++++.| +-=|-++..+
T Consensus 305 ~ae~~l~~g~~DlV~~gR~~ 324 (341)
T PF00724_consen 305 QAEKALEEGKADLVAMGRPL 324 (341)
T ss_dssp HHHHHHHTTSTSEEEESHHH
T ss_pred hhHHHHhcCCceEeeccHHH
Confidence 366777776 5556666554
No 200
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.02 E-value=11 Score=36.68 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=78.6
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhh
Q 029526 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DET 77 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~T 77 (192)
+|.+.|.+.+= || +|..-+|++. -++.+++.|..+|+-|=..+. ...+++...+++ .+.
T Consensus 104 ~a~~~Gidv~Rifd--~lnd~~n~~~---~i~~~k~~G~~~~~~i~yt~s------------p~~t~e~~~~~ak~l~~~ 166 (596)
T PRK14042 104 LAVNNGVDVFRVFD--ALNDARNLKV---AIDAIKSHKKHAQGAICYTTS------------PVHTLDNFLELGKKLAEM 166 (596)
T ss_pred HHHHcCCCEEEEcc--cCcchHHHHH---HHHHHHHcCCEEEEEEEecCC------------CCCCHHHHHHHHHHHHHc
Confidence 45667766553 44 5555666655 567778889988877655531 134555544443 457
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
|+|.|+++ -.=|.. .|.-=.++++.|++.+ ++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 167 Gad~I~Ik--DtaG~l---~P~~v~~lv~alk~~~---~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ 228 (596)
T PRK14042 167 GCDSIAIK--DMAGLL---TPTVTVELYAGLKQAT---GLPVHLHSHSTSGLASICHYEAVLAGCNHIDT 228 (596)
T ss_pred CCCEEEeC--CcccCC---CHHHHHHHHHHHHhhc---CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEe
Confidence 99987764 333333 2555567778888776 57776665 6888889999999999988743
No 201
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=91.01 E-value=1.6 Score=33.06 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..+.|++..+.+++++.|++++|.-..+ |. +.+ .++++.+++.-. ..+++.+-| . .|++++.+..++|+..
T Consensus 35 ~~vp~e~~~~~a~~~~~d~V~iS~~~~~--~~---~~~-~~~~~~L~~~~~-~~i~i~~GG-~-~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 35 LRQTPEEIVEAAIQEDVDVIGLSSLSGG--HM---TLF-PEVIELLRELGA-GDILVVGGG-I-IPPEDYELLKEMGVAE 105 (122)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcccchh--hH---HHH-HHHHHHHHhcCC-CCCEEEEEC-C-CCHHHHHHHHHCCCCE
Confidence 4588999999999999999999965421 21 111 333455555421 135555544 4 4677899999999854
Q ss_pred -eecchHHHHH
Q 029526 143 -FNVNTEVRKA 152 (192)
Q Consensus 143 -INi~T~l~~a 152 (192)
|+-+|.....
T Consensus 106 ~~~~~~~~~~~ 116 (122)
T cd02071 106 IFGPGTSIEEI 116 (122)
T ss_pred EECCCCCHHHH
Confidence 5666665443
No 202
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.94 E-value=1.8 Score=37.91 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 65 TDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.||.+..+..++-|+.+|=|- .+ | + -.-+++.+++|.+ + ++|+-+=||-- .|++++.++.|+.||
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLd---g---g--~~~n~~~i~~i~~-~---~~~vqvGGGIR--~e~i~~~l~~Ga~rV 108 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLG---A---D--DASLAAALEALRA-Y---PGGLQVGGGVN--SENAMSYLDAGASHV 108 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECC---C---C--CcccHHHHHHHHh-C---CCCEEEeCCcc--HHHHHHHHHcCCCEE
Confidence 589876666667777665432 21 1 1 2336899999988 6 69999999776 499999999999999
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
.++|...
T Consensus 109 iigT~Av 115 (262)
T PLN02446 109 IVTSYVF 115 (262)
T ss_pred EEchHHH
Confidence 9999764
No 203
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=90.94 E-value=0.9 Score=40.19 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029526 99 NLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 99 ~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
..+|++|+++.+.+ ++|+|+=.-.|+ .+++++++.++|+.=|=++|.+.
T Consensus 180 ~~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 180 QAPYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred CCCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhh
Confidence 46999999999987 599985555578 88999999999999999999985
No 204
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=90.84 E-value=1.7 Score=37.18 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=59.1
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.|.+|.++.++.++.|...|=+..=+. .. + -..+++.+++|.+.+ ++|+-+=||-. +.|++++.+..|+.|
T Consensus 29 ~y~~p~~~a~~~~~~g~~~lhivDLd~--a~-g--~~~n~~~i~~i~~~~---~~~v~vgGGIr-s~e~~~~~l~~Ga~~ 99 (243)
T TIGR01919 29 YYGSLESAAKWWEQGGAEWIHLVDLDA--AF-G--GGNNEMMLEEVVKLL---VVVEELSGGRR-DDSSLRAALTGGRAR 99 (243)
T ss_pred ecCCHHHHHHHHHhCCCeEEEEEECCC--CC-C--CcchHHHHHHHHHHC---CCCEEEcCCCC-CHHHHHHHHHcCCCE
Confidence 578998888877888876666553211 11 1 234788999999877 58999988766 556799999999999
Q ss_pred eecchHH
Q 029526 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
|.++|..
T Consensus 100 vvigT~a 106 (243)
T TIGR01919 100 VNGGTAA 106 (243)
T ss_pred EEECchh
Confidence 9999984
No 205
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.78 E-value=1.9 Score=39.36 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=81.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|.+-||-|.+.| |-.++.++|...|+ .+++|+.=|=-- +|. --+.+.|+ -++.+|++
T Consensus 112 ~a~~g~yGa~L~~--------~~eLv~e~V~~v~~~l~~pVs~KIRI~---~d~---------~kTvd~ak-~~e~aG~~ 170 (358)
T KOG2335|consen 112 VAKRGGYGAFLMD--------NPELVGEMVSAVRANLNVPVSVKIRIF---VDL---------EKTVDYAK-MLEDAGVS 170 (358)
T ss_pred HHhcCCccceecc--------CHHHHHHHHHHHHhhcCCCeEEEEEec---CcH---------HHHHHHHH-HHHhCCCc
Confidence 4667788888776 45778888877774 677777665322 110 01223343 36789999
Q ss_pred EEEEecCcCCCCCCC--C--CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchH
Q 029526 81 ALAVCIGNVHGKYPS--S--GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTE 148 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~--~--~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~ 148 (192)
.|+| ||.... + .+.+|++.++.|++.+. +||+..-|+-....| ..+|.+ .|+.=|-.+-.
T Consensus 171 ~ltV-----HGRtr~~kg~~~~pad~~~i~~v~~~~~--~ipviaNGnI~~~~d-~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 171 LLTV-----HGRTREQKGLKTGPADWEAIKAVRENVP--DIPVIANGNILSLED-VERCLKYTGADGVMSARG 235 (358)
T ss_pred EEEE-----ecccHHhcCCCCCCcCHHHHHHHHHhCc--CCcEEeeCCcCcHHH-HHHHHHHhCCceEEecch
Confidence 9975 998742 1 47799999999999884 399999999887766 555555 88776655443
No 206
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=90.67 E-value=4.1 Score=33.29 Aligned_cols=78 Identities=22% Similarity=0.442 Sum_probs=47.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH---HHHHHHhhhccCCc-c-EEeecCCCCCHHHHHHHHhcC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD---LLKDLHALSSKKGV-L-LVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~---~L~~I~~~~~~~~i-P-LVlHGgSG~~~e~~~~~i~~G 139 (192)
|+.+.++++. ..+|.+.+ ++.|-...+ ...+.+ .++++++..+..++ | +++=| |+..++++++++.|
T Consensus 120 t~~e~~~~~~--~~~d~i~~--~~~~~g~tg--~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G--GI~~~nv~~l~~~G 191 (220)
T PRK05581 120 TPLEPLEDVL--DLLDLVLL--MSVNPGFGG--QKFIPEVLEKIRELRKLIDERGLDILIEVDG--GINADNIKECAEAG 191 (220)
T ss_pred CCHHHHHHHH--hhCCEEEE--EEECCCCCc--ccccHHHHHHHHHHHHHHHhcCCCceEEEEC--CCCHHHHHHHHHcC
Confidence 5556666664 34686553 555432221 334444 44445444421112 2 44545 99999999999999
Q ss_pred CeEeecchHHH
Q 029526 140 VRKFNVNTEVR 150 (192)
Q Consensus 140 i~KINi~T~l~ 150 (192)
+.=|-++|.+.
T Consensus 192 aD~vvvgSai~ 202 (220)
T PRK05581 192 ADVFVAGSAVF 202 (220)
T ss_pred CCEEEEChhhh
Confidence 99999999875
No 207
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=90.65 E-value=1.5 Score=39.69 Aligned_cols=124 Identities=11% Similarity=0.005 Sum_probs=76.6
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcE-EEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeec
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDA-LAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~-LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++||.+.++++ +.|+|. +++++....+.+-+. ...+ +.-+++|-+.+++.++|.++|+
T Consensus 197 ~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp-~~f~ef~~P~~k~i~~~i~~~g~~~ilh~ 275 (378)
T cd03308 197 DLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRP-KQFEKFYWPSFKKVVEGLAARGQRIFLFF 275 (378)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCH-HHHHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 46889999888876 368885 666665555444321 1111 2334566655544468999997
Q ss_pred CCCCCHHHHHHHHhcCCeEe-ec--chHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029526 124 ASGLSAELIKGCIERGVRKF-NV--NTEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KI-Ni--~T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
. |.....+....++|..++ ++ .+++..+- +.+.+ .+.++..+..-..+.+++.+++.|+.++.
T Consensus 276 c-G~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak-~~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~ 346 (378)
T cd03308 276 E-GDWERYLEYLQELPKGKTVGLFEYGDPKKVK-EKLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAP 346 (378)
T ss_pred C-CCcHHHHHHHHhcCCCcEEEcCCCCCHHHHH-HHhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCC
Confidence 5 555556777778888753 32 35554432 22322 24466644444668899999999998773
No 208
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.52 E-value=13 Score=33.46 Aligned_cols=148 Identities=22% Similarity=0.213 Sum_probs=92.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~Tg 78 (192)
+|++.|.+.|-+=. +....+ ..++.+++|++.|..|.+-+=.. ..++|++..++++ +.|
T Consensus 96 ~a~~~gvd~iri~~-~~~e~~---~~~~~i~~ak~~G~~v~~~l~~a--------------~~~~~e~l~~~a~~~~~~G 157 (337)
T PRK08195 96 MAYDAGVRVVRVAT-HCTEAD---VSEQHIGLARELGMDTVGFLMMS--------------HMAPPEKLAEQAKLMESYG 157 (337)
T ss_pred HHHHcCCCEEEEEE-ecchHH---HHHHHHHHHHHCCCeEEEEEEec--------------cCCCHHHHHHHHHHHHhCC
Confidence 57888998876543 233333 36899999999998776543211 3467777666654 579
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC--CCCHHHHHHHHhcCCeEe------------e
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS--GLSAELIKGCIERGVRKF------------N 144 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS--G~~~e~~~~~i~~Gi~KI------------N 144 (192)
+|++.++ -.-|... |.-=.++++.|++..+ .++|+-+|+=. |+.-.....|++.|+.-| |
T Consensus 158 a~~i~i~--DT~G~~~---P~~v~~~v~~l~~~l~-~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN 231 (337)
T PRK08195 158 AQCVYVV--DSAGALL---PEDVRDRVRALRAALK-PDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGN 231 (337)
T ss_pred CCEEEeC--CCCCCCC---HHHHHHHHHHHHHhcC-CCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccC
Confidence 9976543 4434332 3333455566666552 25888888754 666677888999998876 6
Q ss_pred cchHHHHHHHHHhc-CCCCChHHHHHHHHH
Q 029526 145 VNTEVRKAYMDSLS-RPKSDLIHLMASAKE 173 (192)
Q Consensus 145 i~T~l~~a~~~~~~-~~~~~~~~~~~~~~~ 173 (192)
..|+...++.+... +.+.|+..++..+..
T Consensus 232 ~~tE~lv~~L~~~g~~tgidl~~l~~~a~~ 261 (337)
T PRK08195 232 TPLEVLVAVLDRMGWETGVDLYKLMDAAED 261 (337)
T ss_pred ccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 67887777766542 223455555444433
No 209
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=90.51 E-value=3.5 Score=35.83 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=76.8
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccCCccEEeec
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++||.+.++++ +.|+|.+.++--.+-+.+-+ |+ +=..-+++|-+.++..+.|.++|-
T Consensus 151 ~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~is--p~~f~e~~~p~~k~i~~~i~~~g~~~~lH~ 228 (330)
T cd03465 151 LLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILS--PEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCC--HHHHHHHhhHHHHHHHHHHHHcCCceEEEE
Confidence 36788977776664 24888877764222111111 21 112234555555543468999999
Q ss_pred CCCCCHHHHHHHHhcCCeEeecc--hHHHHHHHHHhcC-----CCCChH-HHHHHHHHHHHHHHHHHHHHhCC
Q 029526 124 ASGLSAELIKGCIERGVRKFNVN--TEVRKAYMDSLSR-----PKSDLI-HLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KINi~--T~l~~a~~~~~~~-----~~~~~~-~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+ |.....+....++|+.=+|++ +++..+ .+.+.. .+.|+. .+.....+.+++.+++.|+.++.
T Consensus 229 c-G~~~~~~~~l~~~~~d~~~~d~~~dl~~~-~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~ 299 (330)
T cd03465 229 C-GDTAPILELMADLGADVFSIDVTVDLAEA-KKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLK 299 (330)
T ss_pred C-CCchhHHHHHHHhCCCeEeecccCCHHHH-HHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhC
Confidence 8 666677899999999888987 344422 222322 234676 55556678899999999998865
No 210
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=90.37 E-value=6.2 Score=33.29 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----CCCHHHHH-------
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----GLSAELIK------- 133 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G~~~e~~~------- 133 (192)
...+++.+.+.+.|.|.+=+..+..|-.+. +.++.+.++++++..+..++++++|+.. ..|++..+
T Consensus 10 ~~~~~~~~~~~~~G~~~vel~~~~~~~~~~---~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l 86 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQLFLGNPRSWKG---VRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERL 86 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHH
Confidence 345678888999999999999999886542 4566666777777766668999999854 23333222
Q ss_pred -----HHHhcCCeEeecchH
Q 029526 134 -----GCIERGVRKFNVNTE 148 (192)
Q Consensus 134 -----~~i~~Gi~KINi~T~ 148 (192)
.|-.+|+..|++.+.
T Consensus 87 ~~~i~~A~~lGa~~vv~h~g 106 (273)
T smart00518 87 IDEIKRCEELGIKALVFHPG 106 (273)
T ss_pred HHHHHHHHHcCCCEEEEccc
Confidence 255778888888654
No 211
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.22 E-value=1.3 Score=34.67 Aligned_cols=79 Identities=23% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----CCCHHHHHHHHhcC
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----GLSAELIKGCIERG 139 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G~~~e~~~~~i~~G 139 (192)
-+.|++..+-+.++++|.+++|+=+.|.. +. =.+.++.+++.-. .++++++=|.- +.+.+..+++.++|
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~-----~~-~~~~~~~L~~~~~-~~~~i~vGG~~~~~~~~~~~~~~~l~~~G 112 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGE-----ID-CRGLREKCIEAGL-GDILLYVGGNLVVGKHDFEEVEKKFKEMG 112 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCH-----HH-HHHHHHHHHhcCC-CCCeEEEECCCCCCccChHHHHHHHHHcC
Confidence 47889999999999999999998666532 11 1344566665511 14655554432 23567788999999
Q ss_pred CeEeec-chHH
Q 029526 140 VRKFNV-NTEV 149 (192)
Q Consensus 140 i~KINi-~T~l 149 (192)
+.+|=- +|++
T Consensus 113 ~~~vf~~~~~~ 123 (137)
T PRK02261 113 FDRVFPPGTDP 123 (137)
T ss_pred CCEEECcCCCH
Confidence 877644 4444
No 212
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=90.14 E-value=2.1 Score=38.87 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecC--cCCCCC-CCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIG--NVHGKY-PSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiG--t~HG~y-~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..+||.|++.+ +.|+|.+=|+|| ..|+-= ..+.+--.+..|.++.+.....++|+..-||--.+-| +-||+.+|-
T Consensus 158 V~T~e~a~~Li-~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gD-I~KALA~GA 235 (343)
T TIGR01305 158 VVTGEMVEELI-LSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGD-VAKAFGAGA 235 (343)
T ss_pred ccCHHHHHHHH-HcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhH-HHHHHHcCC
Confidence 57888998866 689999999976 456432 2222223778888888888766899999999888866 889999999
Q ss_pred eEeecchHH
Q 029526 141 RKFNVNTEV 149 (192)
Q Consensus 141 ~KINi~T~l 149 (192)
.=+-++.-+
T Consensus 236 d~VMlG~ll 244 (343)
T TIGR01305 236 DFVMLGGMF 244 (343)
T ss_pred CEEEECHhh
Confidence 999988443
No 213
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=90.08 E-value=10 Score=32.91 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=54.9
Q ss_pred cCCCHHHHHHHhhh---hCCcEEEEec-C---cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH
Q 029526 63 KLTDVNQAEEFIDE---TDIDALAVCI-G---NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC 135 (192)
Q Consensus 63 ~~T~peea~~Fv~~---TgvD~LAvai-G---t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~ 135 (192)
..++|+++++.|++ .|+|++=+-. | +.+ .+.+ .+.++.+.|+++-+...+.++|+..|... +..++.+
T Consensus 115 ~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-~~~~-~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~ 189 (342)
T cd01299 115 VVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPG-DPPP-DTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRA 189 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-CCCc-ccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHH
Confidence 35778888888764 6999886554 2 111 1122 35788899988887777678999999864 4567777
Q ss_pred HhcCCeEeecchHH
Q 029526 136 IERGVRKFNVNTEV 149 (192)
Q Consensus 136 i~~Gi~KINi~T~l 149 (192)
++.|+.-|--.+.+
T Consensus 190 l~~G~~~i~H~~~~ 203 (342)
T cd01299 190 IRAGVDTIEHGFLI 203 (342)
T ss_pred HHcCCCEEeecCCC
Confidence 77776655433333
No 214
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=90.01 E-value=3.5 Score=36.00 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|-.+|-+.|.+=.+.|+-+ ..++++++||.+|..|=.|. -|.+|.++.++ .|.+.+
T Consensus 125 Ar~~GADavLLI~~~L~~~----~l~el~~~A~~LGm~~LVEV-------------------h~~eEl~rAl~-~ga~iI 180 (254)
T COG0134 125 ARAAGADAVLLIVAALDDE----QLEELVDRAHELGMEVLVEV-------------------HNEEELERALK-LGAKII 180 (254)
T ss_pred HHHcCcccHHHHHHhcCHH----HHHHHHHHHHHcCCeeEEEE-------------------CCHHHHHHHHh-CCCCEE
Confidence 3344555555555566655 56799999999997766552 34578888887 999999
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029526 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.|..-|.|. -..|.++.++|...+.. + .++=.-||+. .+++++..+.|+.=+=|+|.+.
T Consensus 181 GINnRdL~t------f~vdl~~t~~la~~~p~-~--~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM 240 (254)
T COG0134 181 GINNRDLTT------LEVDLETTEKLAPLIPK-D--VILISESGISTPEDVRRLAKAGADAFLVGEALM 240 (254)
T ss_pred EEeCCCcch------heecHHHHHHHHhhCCC-C--cEEEecCCCCCHHHHHHHHHcCCCEEEecHHHh
Confidence 999888874 45678888888776531 2 4455677877 7889999999999999999885
No 215
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.96 E-value=2.3 Score=37.21 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=54.7
Q ss_pred CHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 66 DVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
+|+...+- +++.|+|+|.+.+|..+. + ....++.|++|++.+ ++|+++.+- .+.++.+++.+.|+.=
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~---~--~~~~~~~i~~l~~~~---~~pvivK~v--~s~~~a~~a~~~G~d~ 196 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVL---G--RRLTWDDLAWLRSQW---KGPLILKGI--LTPEDALRAVDAGADG 196 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCC---C--CCCCHHHHHHHHHhc---CCCEEEeec--CCHHHHHHHHHCCCCE
Confidence 67655544 466899999999988762 1 225788999999887 699999875 6678899999999987
Q ss_pred eec
Q 029526 143 FNV 145 (192)
Q Consensus 143 INi 145 (192)
|-+
T Consensus 197 I~v 199 (299)
T cd02809 197 IVV 199 (299)
T ss_pred EEE
Confidence 765
No 216
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.95 E-value=3.9 Score=35.93 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++|||.--|+.+--+++. .++.+++. +..++.|. .+.+|+++.. +.|+|.+.+
T Consensus 158 ~d~vlikdnHi~~~g~~~~---~v~~aR~~~~~~~~Igvsv-------------------~tleea~~A~-~~gaDyI~l 214 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITK---AVTSVREKLGHMVKIEVET-------------------ETEEQVREAV-AAGADIIMF 214 (277)
T ss_pred CceEEEchhHHHhhCCHHH---HHHHHHHhCCCCCEEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 7899999998887766443 33333332 23333331 2457777765 799999977
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
- ++.++.|+++.+..+ .++|++-=| |+..+.+....+.|+.=|=++...
T Consensus 215 D-------------~~~~e~l~~~~~~~~-~~i~i~AiG--GIt~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 215 D-------------NRTPDEIREFVKLVP-SAIVTEASG--GITLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred C-------------CCCHHHHHHHHHhcC-CCceEEEEC--CCCHHHHHHHHHcCCCEEEEChhh
Confidence 1 245677888877663 246666666 899999999999999888776543
No 217
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.86 E-value=4.9 Score=38.00 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=80.3
Q ss_pred CCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 7 GFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 7 GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
+...|.+=.|.- +.+|+++..++.+++|+.+|..|+- + .|| ...|+|+.+.++++.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f--~----~Ed--------~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEF--S----CED--------AGRTEIPFLARIVEA 154 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--E----cCC--------CCCCCHHHHHHHHHH
Confidence 455566665543 5699999999999999999875432 2 233 245899999988765
Q ss_pred ---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 77 ---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 77 ---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
-|+|.+-++ -.=|.- .|.-=.++++.+++.++.. ++||-+|+ ..|+.-..--.|++.|+..|+
T Consensus 155 ~~~~Ga~~i~l~--DTvG~~---~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd 223 (494)
T TIGR00973 155 AINAGATTINIP--DTVGYA---LPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVE 223 (494)
T ss_pred HHHcCCCEEEeC--CCCCCC---CHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 488876553 222221 2544456667777665322 36788755 567888888889999998874
No 218
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=89.83 E-value=7.9 Score=32.88 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=68.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
++++.||+.+=+--..-| ++.++..+++.+..-. ++.+ .+ |. ...+| +++|.+|++. .+
T Consensus 95 ~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~-~~~l-----~v----Da------n~~~~-~~~a~~~~~~l~~~~ 156 (265)
T cd03315 95 RALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGD-DAEL-----RV----DA------NRGWT-PKQAIRALRALEDLG 156 (265)
T ss_pred HHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCC-CCEE-----EE----eC------CCCcC-HHHHHHHHHHHHhcC
Confidence 355678887766654433 5556555555443221 1222 11 00 01244 8999999665 47
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecc
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~ 146 (192)
++++--. -|.-|++.+++|++.+ ++|+++. .|=.+.++++++++.+ +.=||+.
T Consensus 157 i~~iEeP-----------~~~~d~~~~~~l~~~~---~ipia~d-E~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 157 LDYVEQP-----------LPADDLEGRAALARAT---DTPIMAD-ESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCEEECC-----------CCcccHHHHHHHHhhC---CCCEEEC-CCCCCHHHHHHHHHhCCCCEEEEe
Confidence 7777431 1334788889999887 6999985 4556677888888766 6667775
No 219
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=89.81 E-value=8.6 Score=33.26 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029526 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..|..||-|- .|-||+ +..++..++|.|++-.=-|..=-.|..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~gI~VS--------------------LFiDP~~~qi~~A~~~GAd~VELhTG~YA~a~~~ 161 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAAGIEVS--------------------LFIDADKDQISAAAEVGADRIEIHTGPYANAYNK 161 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35666777777888888887776542 344442 455678899999998866654322321
Q ss_pred CCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHhc-C-CeEeecchHH
Q 029526 96 SGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIER-G-VRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~~-G-i~KINi~T~l 149 (192)
...+-+ |++|...... ....|-.|-|.|+.-+.+....+. + +.-+||+-.+
T Consensus 162 --~~~~~e-l~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsi 215 (237)
T TIGR00559 162 --KEMAEE-LQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAI 215 (237)
T ss_pred --hhHHHH-HHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHH
Confidence 222222 4555443221 257899999999999999987544 4 9999999776
No 220
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.79 E-value=9 Score=33.43 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=49.1
Q ss_pred HHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeE
Q 029526 67 VNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRK 142 (192)
Q Consensus 67 peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~K 142 (192)
+++|.+|++. -+++++-= + -+.-|++.+++|++.+ ++|+.+ |.|=.+.++++++++.| +.=
T Consensus 190 ~~~A~~~~~~l~~~~l~~iEe---------P--~~~~d~~~~~~L~~~~---~ipIa~-~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 190 PEEAVELLRELAELGVELIEQ---------P--VPAGDDDGLAYLRDKS---PLPIMA-DESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred HHHHHHHHHHHHhcCCCEEEC---------C--CCCCCHHHHHHHHhcC---CCCEEE-eCCCCCHHHHHHHHhcCCCCE
Confidence 5789999664 47777721 1 2345889999999887 699888 45777888999999855 666
Q ss_pred eecchHH
Q 029526 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
+|+....
T Consensus 255 v~~~~~~ 261 (316)
T cd03319 255 INIKLMK 261 (316)
T ss_pred EEEeccc
Confidence 6776433
No 221
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.68 E-value=0.98 Score=39.06 Aligned_cols=138 Identities=12% Similarity=0.245 Sum_probs=79.2
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--C---CeE---EEeccccc----cCCCCCccccccccCCCH-
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--G---MLV---EAELGRLS----GTEDGLTVEDYEAKLTDV- 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--g---v~V---EaElG~i~----g~e~~~~~~~~~~~~T~p- 67 (192)
++++|+|...||+ |.=+|.+..+++|+.|+-. | +.- =...|... ..++.. ..-.+.-+|
T Consensus 85 ~r~LD~Ga~giiv-----P~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~---~vi~~IEt~~ 156 (256)
T PRK10558 85 KRLLDIGFYNFLI-----PFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNI---TVLVQIESQQ 156 (256)
T ss_pred HHHhCCCCCeeee-----cCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhcccc---EEEEEECCHH
Confidence 3789999999985 9999999999999999842 2 110 00111100 000000 001123344
Q ss_pred --HHHHHHhhhhCCcEEEEecC---cCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 68 --NQAEEFIDETDIDALAVCIG---NVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 68 --eea~~Fv~~TgvD~LAvaiG---t~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+.+.+++..-|||.|.+.-+ ..-|.... ..|.+.. .+.++....+..++|.-++.++ .++.++.++.|++
T Consensus 157 av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~-a~~~v~~aa~~~G~~~g~~~~~---~~~~~~~~~~G~~ 232 (256)
T PRK10558 157 GVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQK-AIQHIFARAKAHGKPSGILAPV---EADARRYLEWGAT 232 (256)
T ss_pred HHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHH-HHHHHHHHHHHcCCceEEcCCC---HHHHHHHHHcCCC
Confidence 45566666568997765332 11122110 1132222 2344444454557888666533 4779999999999
Q ss_pred EeecchHHH
Q 029526 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=|.+++|..
T Consensus 233 ~v~~~~D~~ 241 (256)
T PRK10558 233 FVAVGSDLG 241 (256)
T ss_pred EEEEchHHH
Confidence 999999875
No 222
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.67 E-value=2 Score=36.53 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=56.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
+.||.+..++..+.|+|.|-+.==+ |.. + -..+++.+++|.+.. ..|+-+=||-.. .|++++..+.|+.||
T Consensus 29 ~~dP~~~a~~~~~~ga~~lhivDLd--~a~-~--~~~n~~~i~~i~~~~---~~~v~vGGGIrs-~e~~~~~l~~Ga~kv 99 (232)
T PRK13586 29 LGNPIEIASKLYNEGYTRIHVVDLD--AAE-G--VGNNEMYIKEISKIG---FDWIQVGGGIRD-IEKAKRLLSLDVNAL 99 (232)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECC--CcC-C--CcchHHHHHHHHhhC---CCCEEEeCCcCC-HHHHHHHHHCCCCEE
Confidence 5699888888888999988775111 222 1 223678899998743 259888886553 477999999999999
Q ss_pred ecchHH
Q 029526 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++|..
T Consensus 100 vigt~a 105 (232)
T PRK13586 100 VFSTIV 105 (232)
T ss_pred EECchh
Confidence 999976
No 223
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.64 E-value=7 Score=32.70 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=61.6
Q ss_pred CHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 66 DVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
++++..++++ +.|||.+-+..|.....|+. -.-++++++.+++... +++++.+.-.| .++++++.++|+.-
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~--~~~~~~~i~~l~~~~~--~~~~~~l~~~~--~~~i~~a~~~g~~~ 90 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQ--MEDDWEVLRAIRKLVP--NVKLQALVRNR--EKGIERALEAGVDE 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccccc--CCCHHHHHHHHHhccC--CcEEEEEccCc--hhhHHHHHhCCcCE
Confidence 7777777655 57999999999888766642 3346788888887653 57887777665 88999999999999
Q ss_pred eecchHHHH
Q 029526 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
|.+.-+...
T Consensus 91 i~i~~~~s~ 99 (265)
T cd03174 91 VRIFDSASE 99 (265)
T ss_pred EEEEEecCH
Confidence 999866553
No 224
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.60 E-value=2.8 Score=33.03 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH-HHHHHHHhhhccCCccEEeecCC-CCCHHHHH----HHH
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL-DLLKDLHALSSKKGVLLVLHGAS-GLSAELIK----GCI 136 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~-~~L~~I~~~~~~~~iPLVlHGgS-G~~~e~~~----~~i 136 (192)
...+||+..+=+.+.++|++++|.=+.|.. ..+ ++.+.+++.-- .+++ |+=||. .+|++++. ++.
T Consensus 37 ~~v~~e~~v~aa~~~~adiVglS~l~~~~~-------~~~~~~~~~l~~~gl-~~~~-vivGG~~vi~~~d~~~~~~~l~ 107 (134)
T TIGR01501 37 VLSPQEEFIKAAIETKADAILVSSLYGHGE-------IDCKGLRQKCDEAGL-EGIL-LYVGGNLVVGKQDFPDVEKRFK 107 (134)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecccccCH-------HHHHHHHHHHHHCCC-CCCE-EEecCCcCcChhhhHHHHHHHH
Confidence 458899999999999999999985332211 112 12334444311 1344 555665 68888765 588
Q ss_pred hcCCeEee
Q 029526 137 ERGVRKFN 144 (192)
Q Consensus 137 ~~Gi~KIN 144 (192)
++|+.+|=
T Consensus 108 ~~Gv~~vF 115 (134)
T TIGR01501 108 EMGFDRVF 115 (134)
T ss_pred HcCCCEEE
Confidence 99987763
No 225
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.59 E-value=1.8 Score=37.77 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=55.1
Q ss_pred CHHH-HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 66 DVNQ-AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 66 ~pee-a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
+.+| ++.-+.+...|.|-|+ |+.+|. ..|++.|+++++... ++|+.| |||+..+++.++++. ..=+.
T Consensus 158 ~~~e~a~~~~~~~~aDavivt-G~~TG~------~~d~~~l~~vr~~~~--~~Pvll--ggGvt~eNv~e~l~~-adGvi 225 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILS-GKTTGT------EVDLELLKLAKETVK--DTPVLA--GSGVNLENVEELLSI-ADGVI 225 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEEC-cCCCCC------CCCHHHHHHHHhccC--CCeEEE--ECCCCHHHHHHHHhh-CCEEE
Confidence 3444 4444556669999987 666653 358999999987553 589877 459999999999987 77889
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.++
T Consensus 226 VgS~~K 231 (257)
T TIGR00259 226 VATTIK 231 (257)
T ss_pred ECCCcc
Confidence 999886
No 226
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.52 E-value=1.7 Score=37.22 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.||.+..++.++.|+|.|-+.= .-|.- . .-..+++.+++|.+.+ +|+-+=||-. +.|++++....|+.|+-
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivD--Ld~a~-~-g~~~n~~~i~~i~~~~----~~v~vGGGIr-s~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVD--LSKAI-E-NSVENLPVLEKLSEFA----EHIQIGGGIR-SLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE--CCCcc-c-CCcchHHHHHHHHhhc----CcEEEecCCC-CHHHHHHHHHCCCCEEE
Confidence 5999977777789999987751 11100 1 2335899999998875 6887777544 35789999999999999
Q ss_pred cchHH
Q 029526 145 VNTEV 149 (192)
Q Consensus 145 i~T~l 149 (192)
++|..
T Consensus 101 igT~a 105 (241)
T PRK14114 101 VSSKV 105 (241)
T ss_pred ECchh
Confidence 99964
No 227
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.51 E-value=0.77 Score=40.10 Aligned_cols=136 Identities=13% Similarity=0.272 Sum_probs=80.4
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CC---CeE----EEeccccccCCCCCcc--cc--ccccCCCH
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KG---MLV----EAELGRLSGTEDGLTV--ED--YEAKLTDV 67 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~g---v~V----EaElG~i~g~e~~~~~--~~--~~~~~T~p 67 (192)
++++|+|+..||+ |.=++.+..+++|+.|+- .| +.- =.-.|.. .+-... +. .-.+.-+|
T Consensus 84 ~r~LD~GA~GIiv-----P~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~---~~y~~~an~~~~vi~qiEt~ 155 (267)
T PRK10128 84 KQVLDIGAQTLLI-----PMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRI---ENYMAQANDSLCLLVQVESK 155 (267)
T ss_pred HHHhCCCCCeeEe-----cCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCCh---HHHHHHhccccEEEEEECCH
Confidence 3799999999997 889999999999999982 12 110 0001100 000000 00 00122333
Q ss_pred ---HHHHHHhhhhCCcEEEEecCc---CC---CCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029526 68 ---NQAEEFIDETDIDALAVCIGN---VH---GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 68 ---eea~~Fv~~TgvD~LAvaiGt---~H---G~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
+.+.++++--|||.|-+.-+- .- |.|. .|.+. +.++++.+.++..++|+-.|. .+.++.++.++.
T Consensus 156 ~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~--~pev~-~ai~~v~~a~~~~Gk~~G~~~---~~~~~a~~~~~~ 229 (267)
T PRK10128 156 TALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAG--HPEVQ-RIIETSIRRIRAAGKAAGFLA---VDPDMAQKCLAW 229 (267)
T ss_pred HHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCC--CHHHH-HHHHHHHHHHHHcCCeEEEcC---CCHHHHHHHHHc
Confidence 456666766789987643221 11 2222 13222 334555555655678886554 445889999999
Q ss_pred CCeEeecchHHH
Q 029526 139 GVRKFNVNTEVR 150 (192)
Q Consensus 139 Gi~KINi~T~l~ 150 (192)
|++=|.+++|..
T Consensus 230 G~~~v~~g~D~~ 241 (267)
T PRK10128 230 GANFVAVGVDTM 241 (267)
T ss_pred CCcEEEEChHHH
Confidence 999999999973
No 228
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=89.27 E-value=1.4 Score=34.45 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+.+|++..+=+.++++|.+.+|-=. +.| ..+-.++++++++.-. .++|++..| .+|++++++..++||..
T Consensus 38 ~~~s~e~~v~aa~e~~adii~iSsl~--~~~----~~~~~~~~~~L~~~g~-~~i~vivGG--~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 38 LFQTPEEIARQAVEADVHVVGVSSLA--GGH----LTLVPALRKELDKLGR-PDILVVVGG--VIPPQDFDELKEMGVAE 108 (132)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCch--hhh----HHHHHHHHHHHHhcCC-CCCEEEEeC--CCChHhHHHHHHCCCCE
Confidence 56899999888999999999997311 111 2223445566665421 146777755 35788899999999854
Q ss_pred -eecchHHH
Q 029526 143 -FNVNTEVR 150 (192)
Q Consensus 143 -INi~T~l~ 150 (192)
|.-+|++.
T Consensus 109 ~~~~gt~~~ 117 (132)
T TIGR00640 109 IFGPGTPIP 117 (132)
T ss_pred EECCCCCHH
Confidence 55566553
No 229
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=89.20 E-value=2 Score=37.33 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=62.0
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 63 KLTDVNQAEEFIDETDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..-||-+..++..+-|+|=|-.= |--+| ..-.++++.+++..+.+ -|||..-||-... |++++....|.-
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~-----~gr~~~~~vv~r~A~~v---fiPltVGGGI~s~-eD~~~ll~aGAD 98 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASS-----EGRETMLDVVERVAEQV---FIPLTVGGGIRSV-EDARKLLRAGAD 98 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccc-----ccchhHHHHHHHHHhhc---eeeeEecCCcCCH-HHHHHHHHcCCC
Confidence 35789888888899999977642 22222 13568999999999888 6999999987754 669999999999
Q ss_pred EeecchHH
Q 029526 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
||-|+|.-
T Consensus 99 KVSINsaA 106 (256)
T COG0107 99 KVSINSAA 106 (256)
T ss_pred eeeeChhH
Confidence 99999975
No 230
>PLN02321 2-isopropylmalate synthase
Probab=88.92 E-value=5.6 Score=38.95 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hCCcEEEEecCcCCCCCCC
Q 029526 19 PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~ 95 (192)
+.+|+++..++.+++|+.+|.. +.+.+ .||. ..|+|+.+.++++. -|+|.+-++ -.=|..
T Consensus 204 t~ee~l~~~~~~V~~Ak~~G~~-~v~fs----~EDa--------~rtd~d~l~~~~~~a~~aGa~~I~L~--DTvG~~-- 266 (632)
T PLN02321 204 TPDEVVEIARDMVKYARSLGCE-DVEFS----PEDA--------GRSDPEFLYRILGEVIKAGATTLNIP--DTVGYT-- 266 (632)
T ss_pred CHHHHHHHHHHHHHHHHHcCCc-eEEEe----cccC--------CCCCHHHHHHHHHHHHHcCCCEEEec--ccccCC--
Confidence 5699999999999999999863 22222 2332 45899988888764 588876553 332322
Q ss_pred CCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 96 SGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
.|.-=.++++.|++.+... ++||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 267 -~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~ 318 (632)
T PLN02321 267 -LPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEV 318 (632)
T ss_pred -CHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 2443456667777665422 37788888 6688888888999999988753
No 231
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.73 E-value=1.5 Score=35.66 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=34.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|-... |.++...+.++... ..+.+|+- |-| +++.+.+|. +||||.
T Consensus 95 ea~~~g~d~I~lD~~~~---~~~~~~v~~l~~~~-~~v~ie~S-GGI-----------------~~~ni~~ya-~~gvD~ 151 (169)
T PF01729_consen 95 EALEAGADIIMLDNMSP---EDLKEAVEELRELN-PRVKIEAS-GGI-----------------TLENIAEYA-KTGVDV 151 (169)
T ss_dssp HHHHTT-SEEEEES-CH---HHHHHHHHHHHHHT-TTSEEEEE-SSS-----------------STTTHHHHH-HTT-SE
T ss_pred HHHHhCCCEEEecCcCH---HHHHHHHHHHhhcC-CcEEEEEE-CCC-----------------CHHHHHHHH-hcCCCE
Confidence 68999999999998843 44444444443333 23666664 211 224556655 899997
Q ss_pred EEE
Q 029526 82 LAV 84 (192)
Q Consensus 82 LAv 84 (192)
+.+
T Consensus 152 isv 154 (169)
T PF01729_consen 152 ISV 154 (169)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
No 232
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=88.67 E-value=4.3 Score=35.73 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhhhh------CCc-EEEEecCcCC
Q 029526 19 PFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET------DID-ALAVCIGNVH 90 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T------gvD-~LAvaiGt~H 90 (192)
+.+|+++..++++++|+.+|.. +..-++.--+.|| ..-++|+...++++.- |+| ..-+++.-.=
T Consensus 114 s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~ED--------asr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTv 185 (284)
T cd07942 114 SKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPES--------FSDTELDFALEVCEAVIDVWQPTPENKIILNLPATV 185 (284)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCceEEEEECCcc--------CCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccc
Confidence 6799999999999999998753 0001111112222 2348899888888653 444 2233433333
Q ss_pred CCCCCCCCCCCHHHHHHHHhhhccC-CccEEeecC--CCCCHHHHHHHHhcCCeEee
Q 029526 91 GKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHGA--SGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 91 G~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHGg--SG~~~e~~~~~i~~Gi~KIN 144 (192)
|.- .|.-=.++++.|++.+... ++||-+|+= -|+.-...-.|+..|+..|+
T Consensus 186 G~a---~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 186 EVA---TPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred ccc---CHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 322 1322246677777665321 356777664 56777888889999999887
No 233
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.62 E-value=10 Score=29.75 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=73.3
Q ss_pred hhhhcCCCEeEeeCCCC---C--HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC-CHHHHHHH--
Q 029526 2 EAIVLGFDSLMVDGSHL---P--FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT-DVNQAEEF-- 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l---~--~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T-~peea~~F-- 73 (192)
+|.++|.+-||+-.... + .++.++..+++.+.+ +.+++|=... +. ..| +|++..++
T Consensus 73 ~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--~p-------------~~~~~~~~~~~~~~ 136 (201)
T cd00945 73 EAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--ET-------------RGLKTADEIAKAAR 136 (201)
T ss_pred HHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--EC-------------CCCCCHHHHHHHHH
Confidence 67889999998864432 1 366666667777766 3454433221 00 012 56666655
Q ss_pred -hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 74 -IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 74 -v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+.-|+|.+-.+.|.. + ...+++.+++|.+..+ .++|+..-||... .+++..+...|..
T Consensus 137 ~~~~~g~~~iK~~~~~~----~---~~~~~~~~~~i~~~~~-~~~~v~~~gg~~~-~~~~~~~~~~Ga~ 196 (201)
T cd00945 137 IAAEAGADFIKTSTGFG----G---GGATVEDVKLMKEAVG-GRVGVKAAGGIKT-LEDALAAIEAGAD 196 (201)
T ss_pred HHHHhCCCEEEeCCCCC----C---CCCCHHHHHHHHHhcc-cCCcEEEECCCCC-HHHHHHHHHhccc
Confidence 3567999998776542 2 2347888898987763 1478888887763 5778888888754
No 234
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=88.46 E-value=5 Score=35.04 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
+++||+-.-|+-+.-++.. .+.++.+++.- ..+|.| -.+++|+.+-+ +.|+|.+.+
T Consensus 152 ~d~vlikdnH~~~~g~~~~-~~av~~~R~~~~~~~IgVe-------------------v~t~eea~~A~-~~gaD~I~l- 209 (272)
T cd01573 152 SETILVFAEHRAFLGGPEP-LKALARLRATAPEKKIVVE-------------------VDSLEEALAAA-EAGADILQL- 209 (272)
T ss_pred CcceEeehhHHHHhCCchH-HHHHHHHHHhCCCCeEEEE-------------------cCCHHHHHHHH-HcCCCEEEE-
Confidence 6789999988877666544 34445555431 122222 13468888865 789997664
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
||. |+ +-++++.+.++. .++|++-=| |+..+.+....+.|+.=| +-+.+
T Consensus 210 -d~~---~p--------~~l~~~~~~~~~~~~~i~i~AsG--GI~~~ni~~~~~~Gvd~I-~vsai 260 (272)
T cd01573 210 -DKF---SP--------EELAELVPKLRSLAPPVLLAAAG--GINIENAAAYAAAGADIL-VTSAP 260 (272)
T ss_pred -CCC---CH--------HHHHHHHHHHhccCCCceEEEEC--CCCHHHHHHHHHcCCcEE-EEChh
Confidence 443 32 223444443322 158999999 788999999999999999 65555
No 235
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=88.45 E-value=2.2 Score=38.16 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEe
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKF 143 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KI 143 (192)
+...+..+-++++|+|+|+|---|.=-.|.+ | +|++.++++++.++ ++|+..-|+--.+++ .+++.+ .|+.=|
T Consensus 152 ~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~--~-ad~~~I~~vk~~~~--~ipvi~NGdI~s~~~-a~~~l~~tg~DgV 225 (323)
T COG0042 152 ILALEIARILEDAGADALTVHGRTRAQGYLG--P-ADWDYIKELKEAVP--SIPVIANGDIKSLED-AKEMLEYTGADGV 225 (323)
T ss_pred ccHHHHHHHHHhcCCCEEEEecccHHhcCCC--c-cCHHHHHHHHHhCC--CCeEEeCCCcCCHHH-HHHHHHhhCCCEE
Confidence 4566888889999999998744444444543 3 89999999999984 399999997655555 555555 678888
Q ss_pred ecchHH
Q 029526 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++-..
T Consensus 226 MigRga 231 (323)
T COG0042 226 MIGRGA 231 (323)
T ss_pred EEcHHH
Confidence 887654
No 236
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=88.42 E-value=4.4 Score=34.58 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=57.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH----h---
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF----I--- 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F----v--- 74 (192)
+++++|.+++ +|.+...+.++. ..+.++|++.|+.+=.=+|.-..... . . ...-.+.++..+. +
T Consensus 40 ~~~~~Gvtti-v~~~~~~~~~~~---~~~~~~~~~~g~~v~~~~G~hp~~~~--~--~-~~~~~~~~~l~~~~~~~l~~~ 110 (293)
T cd00530 40 RFRAHGGRTI-VDATPPGIGRDV---EKLAEVARATGVNIVAATGFYKDAFY--P--E-WVRLRSVEELTDMLIREIEEG 110 (293)
T ss_pred HHHHcCCCeE-EEcCCcccCcCH---HHHHHHHHHhCCcEEEecccCCCccC--h--H-HHhhCCHHHHHHHHHHHHHhc
Confidence 5677888877 565544333333 33445555666655555554321100 0 0 0001222333221 1
Q ss_pred -hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC--CCHHHHHHHHhcCC
Q 029526 75 -DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG--LSAELIKGCIERGV 140 (192)
Q Consensus 75 -~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG--~~~e~~~~~i~~Gi 140 (192)
..+++ -|++||.+=.-|. ......+.|++.-+..+..+.|+++|-..+ -.++.+....+.|+
T Consensus 111 ~~~~~i--~~~~IGEigld~~--~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~ 175 (293)
T cd00530 111 IEGTGI--KAGIIKEAGGSPA--ITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGV 175 (293)
T ss_pred cccCCc--CceEEEEeecCCC--CCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCC
Confidence 12333 3344444422231 123344444444444334478888886654 44455555555565
No 237
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=88.29 E-value=1.1 Score=39.62 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=47.9
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecc
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~ 146 (192)
.+-.+.+++.|+|+|.|---|..-.|+ ...|++.+++|++.+ +||++..|+--.+++ ++++.+. |+.=|-++
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~---~~a~w~~i~~i~~~~---~ipvi~NGdI~s~~d-~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYK---GPADWEAIAEIKEAL---PIPVIANGDIFSPED-AERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCT---S---HHHHHHCHHC----TSEEEEESS--SHHH-HHHHCCCH-SSEEEES
T ss_pred HHHHHHhhhcccceEEEecCchhhcCC---cccchHHHHHHhhcc---cceeEEcCccCCHHH-HHHHHHhcCCcEEEEc
Confidence 344455678999999874444444454 367999999999988 699999999887755 5665554 99888888
Q ss_pred hHH
Q 029526 147 TEV 149 (192)
Q Consensus 147 T~l 149 (192)
..+
T Consensus 214 Rga 216 (309)
T PF01207_consen 214 RGA 216 (309)
T ss_dssp HHH
T ss_pred hhh
Confidence 765
No 238
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=88.20 E-value=12 Score=33.91 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=82.1
Q ss_pred hhhhcCCCEeE----eeCCCCC---HHHHHHHHHHHHHHHHhCCCeEEEec-cccccCCCCCccccccccCCCH----HH
Q 029526 2 EAIVLGFDSLM----VDGSHLP---FKDNISHTKYISFLAHSKGMLVEAEL-GRLSGTEDGLTVEDYEAKLTDV----NQ 69 (192)
Q Consensus 2 ~ai~~GFtSVM----~D~S~l~---~eeNi~~Tk~vv~~Ah~~gv~VEaEl-G~i~g~e~~~~~~~~~~~~T~p----ee 69 (192)
+|+++|-+-|. |+ +..+ -+++++..++|.+.|++.|+++=.|+ =.-.+..+... . +-.-.+| .-
T Consensus 114 ~a~~~GAdAVk~lv~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~--~~a~~~p~~V~~a 189 (340)
T PRK12858 114 RIKEAGADAVKLLLYYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-E--EFAKVKPEKVIKT 189 (340)
T ss_pred HHHHcCCCEEEEEEEeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-c--cccccCHHHHHHH
Confidence 46777766554 34 3433 46888889999999999999998884 33222221110 0 0011344 34
Q ss_pred HHHHhh-hhCCcEEEEec-CcCCCCC--CCCCCCC-C---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHH----HHh
Q 029526 70 AEEFID-ETDIDALAVCI-GNVHGKY--PSSGPNL-K---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKG----CIE 137 (192)
Q Consensus 70 a~~Fv~-~TgvD~LAvai-Gt~HG~y--~~~~p~l-d---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~----~i~ 137 (192)
++.|.+ +.|+|.|=+-+ |+.+.+. ..+.... + .+.++++.+.+ ++|.|+=||- .++++|.+ |++
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG-~~~~~f~~~l~~A~~ 265 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAG-VSPELFRRTLEFACE 265 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCC-CCHHHHHHHHHHHHH
Confidence 677776 89999998864 2322211 0000001 1 13455555554 7998886653 47776665 566
Q ss_pred cCC--eEeecchHHHHHHHHHhc
Q 029526 138 RGV--RKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 138 ~Gi--~KINi~T~l~~a~~~~~~ 158 (192)
.|. +=|=++- ..|.+++.
T Consensus 266 aGa~f~Gvl~GR---niwq~~v~ 285 (340)
T PRK12858 266 AGADFSGVLCGR---ATWQDGIE 285 (340)
T ss_pred cCCCccchhhhH---HHHhhhhc
Confidence 666 5554443 33444444
No 239
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=88.19 E-value=13 Score=32.12 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029526 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..|..||.|- .|-||+ +..+..+++|.|++-.=-|..=-.|..
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~gIrVS--------------------LFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~ 164 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDAGIRVS--------------------LFIDPDPEQIEAAAEVGADRIELHTGPYADAKTE 164 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35566777777777777777775442 233332 345568899999988766554222221
Q ss_pred CCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029526 96 SGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
....-|+.|...... ....|-.|-|.|+.-+.+....+ -+|.-+||+-.+
T Consensus 165 ----~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsi 216 (239)
T PRK05265 165 ----AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAI 216 (239)
T ss_pred ----chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHH
Confidence 223334555443221 25789999999999999999655 579999999776
No 240
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=88.15 E-value=11 Score=35.97 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=83.9
Q ss_pred hhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 3 AIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|..-|++=.|.- +.+||++..++.+++|+.+|..|+--.-+. .| ...|+|+.+.+
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f---~D--------~~r~~~~~l~~ 158 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHF---FD--------GYKANPEYALA 158 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeee---ee--------cccCCHHHHHH
Confidence 4566777677655443 679999999999999999998776322121 01 13489999888
Q ss_pred Hhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 73 FIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 73 Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+++. -|+|.+-++ =|+ |.- .|.-=.++++.+++.++ .+||-+|+ ..|+.-..--.|+..|+..|+.
T Consensus 159 ~~~~a~~aGad~i~i~-DTv-G~~---~P~~v~~li~~l~~~~~--~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~ 229 (526)
T TIGR00977 159 TLATAQQAGADWLVLC-DTN-GGT---LPHEISEITTKVKRSLK--QPQLGIHAHNDSGTAVANSLLAVEAGATMVQG 229 (526)
T ss_pred HHHHHHhCCCCeEEEe-cCC-CCc---CHHHHHHHHHHHHHhCC--CCEEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 8765 589988776 222 221 24444566677776663 23477766 4577777777888888888765
No 241
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.15 E-value=4.3 Score=33.31 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=85.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeE-E-------Eecc--cc-ccCCCC-C-cc-ccccc----c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLV-E-------AELG--RL-SGTEDG-L-TV-EDYEA----K 63 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~V-E-------aElG--~i-~g~e~~-~-~~-~~~~~----~ 63 (192)
.+++.|++.|=+=-...+-.|-++..++....++....+| - .++| .| .+..+. . .. ...+. -
T Consensus 32 ~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~~~~~~~~~~i~G 111 (187)
T PRK07455 32 AVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIEAAVAQDIPIIPG 111 (187)
T ss_pred HHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEEcC
Confidence 5788899999887777777788877777655442111000 0 0111 01 111110 0 00 00000 0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
-.+|+|+.+ ..+.|+|.+.+ |+. .+-+-++.|+.++.... ++|+|==| |++.+++....+.|+.=+
T Consensus 112 ~~t~~e~~~-A~~~Gadyv~~--------Fpt-~~~~G~~~l~~~~~~~~--~ipvvaiG--GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 112 ALTPTEIVT-AWQAGASCVKV--------FPV-QAVGGADYIKSLQGPLG--HIPLIPTG--GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cCCHHHHHH-HHHCCCCEEEE--------CcC-CcccCHHHHHHHHhhCC--CCcEEEeC--CCCHHHHHHHHHCCCeEE
Confidence 257888876 44689999997 654 35567888999998773 49999888 788899999999999888
Q ss_pred ecchHHH
Q 029526 144 NVNTEVR 150 (192)
Q Consensus 144 Ni~T~l~ 150 (192)
=+.+.+.
T Consensus 178 av~s~i~ 184 (187)
T PRK07455 178 GLSGQLF 184 (187)
T ss_pred EEehhcc
Confidence 7777653
No 242
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.01 E-value=4.1 Score=35.76 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.-.|+-+-+.+ ++.++.+++. ...+|.|. .+.|||++.+ +.|+|.+-.
T Consensus 152 ~d~vlikdnHi~~~g~i---~~~v~~~k~~~p~~~~I~VEv-------------------~tleea~~A~-~~GaDiI~L 208 (273)
T PRK05848 152 DDCLMLKDTHLKHIKDL---KEFIQHARKNIPFTAKIEIEC-------------------ESLEEAKNAM-NAGADIVMC 208 (273)
T ss_pred hhhhCcCHHHHHHHCcH---HHHHHHHHHhCCCCceEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 45899988887766544 4455555542 35677763 2447899988 588997762
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-+.+++.|+++-+..+. .++++-.=| |+..+++++..++|+.-|=+++...
T Consensus 209 -------------Dn~~~e~l~~~v~~~~~~~~~~~ieAsG--gIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 209 -------------DNMSVEEIKEVVAYRNANYPHVLLEASG--NITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -------------CCCCHHHHHHHHHHhhccCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEeChhhc
Confidence 12367777777665321 235566667 6799999999999999999888653
No 243
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=87.75 E-value=1.9 Score=38.43 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=47.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|--.. ..++++|++.+. .+.+|+- || -+++-+.+|. +||||.
T Consensus 223 ea~~~gaDiI~LDn~s~------e~~~~av~~~~~-~~~ieaS----GG--------------I~~~ni~~yA-~tGVD~ 276 (296)
T PRK09016 223 QALKAGADIIMLDNFTT------EQMREAVKRTNG-RALLEVS----GN--------------VTLETLREFA-ETGVDF 276 (296)
T ss_pred HHHHcCCCEEEeCCCCh------HHHHHHHHhhcC-CeEEEEE----CC--------------CCHHHHHHHH-hcCCCE
Confidence 68999999999997553 345666666553 4555553 11 3456777765 999998
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDL 104 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~ 104 (192)
+.++- .|.+ .+.+||.+
T Consensus 277 Is~ga-----lths-a~~lD~sl 293 (296)
T PRK09016 277 ISVGA-----LTKH-VQALDLSM 293 (296)
T ss_pred EEeCc-----cccC-CCccceee
Confidence 87653 3554 47788763
No 244
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=87.69 E-value=12 Score=30.77 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=77.2
Q ss_pred hhhhcCCCEeE--eeCC---CCCHHHHHHHHHHHHHHHHhCCCeEEE--eccccccCCCCCccccccccCCCHHHHHHHh
Q 029526 2 EAIVLGFDSLM--VDGS---HLPFKDNISHTKYISFLAHSKGMLVEA--ELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM--~D~S---~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--ElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
+|+++|-+-|. ++-+ .-.++++.+.-+++++.|+ |+.+=. |.|.+. + .....|-+-.
T Consensus 77 ~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~---~-----------~~i~~a~ria 140 (203)
T cd00959 77 EAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLLT---D-----------EEIIKACEIA 140 (203)
T ss_pred HHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCCC---H-----------HHHHHHHHHH
Confidence 68888877544 4544 2356778888899999998 555433 433330 0 0123455556
Q ss_pred hhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 75 DETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.+-|.|++=.+-|=.. +.-.++-++.+++.++ .++|++.=||-- +.+++.+.+..|...|
T Consensus 141 ~e~GaD~IKTsTG~~~-------~~at~~~v~~~~~~~~-~~v~ik~aGGik-t~~~~l~~~~~g~~ri 200 (203)
T cd00959 141 IEAGADFIKTSTGFGP-------GGATVEDVKLMKEAVG-GRVGVKAAGGIR-TLEDALAMIEAGATRI 200 (203)
T ss_pred HHhCCCEEEcCCCCCC-------CCCCHHHHHHHHHHhC-CCceEEEeCCCC-CHHHHHHHHHhChhhc
Confidence 6789999998865431 1224444555555554 369999999999 7889999999987654
No 245
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=87.66 E-value=18 Score=32.17 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCC-------------CCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCC
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVH-------------GKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGL 127 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~H-------------G~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~ 127 (192)
+++..+..+-+++.|+|.+.+.-.+.. |.|++ |.+. ++.+.++++.+ ++|++-=||--.
T Consensus 174 ~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG--~~~~~~al~~v~~v~~~~---~ipIig~GGI~s 248 (325)
T cd04739 174 FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS--PAEIRLPLRWIAILSGRV---KASLAASGGVHD 248 (325)
T ss_pred ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC--ccchhHHHHHHHHHHccc---CCCEEEECCCCC
Confidence 466677777788999999987543311 11111 2222 22334444444 699999998887
Q ss_pred CHHHHHHHHhcCCeEeecchHHHH
Q 029526 128 SAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 128 ~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
++| ..+++.+|..=|-++|.+..
T Consensus 249 ~~D-a~e~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 249 AED-VVKYLLAGADVVMTTSALLR 271 (325)
T ss_pred HHH-HHHHHHcCCCeeEEehhhhh
Confidence 766 55556799999999999865
No 246
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=87.37 E-value=4.5 Score=33.84 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=78.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccC---CCCC--ccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGT---EDGL--TVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~---e~~~--~~~~~~~~~T~peea~~Fv~~ 76 (192)
.+-++||+.|=+.. |++.+ ..++.+++..+|+.|-+--...+.- .... ..+..+.....-+++.++.++
T Consensus 22 ~~~e~G~~~vEl~~---~~~~~---~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (254)
T TIGR03234 22 AAAQAGFTGVEYLF---PYDWD---AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARA 95 (254)
T ss_pred HHHHcCCCEEEecC---CccCC---HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHH
Confidence 35688999998865 44444 4667778889999887642121100 0000 000000011222355667788
Q ss_pred hCCcEEEEecCcCCCCCCCCCC-CCCHHHHHHHHhhhccCCccEEeec--------CCCCCHHHHHHHHh---cCCeEee
Q 029526 77 TDIDALAVCIGNVHGKYPSSGP-NLKLDLLKDLHALSSKKGVLLVLHG--------ASGLSAELIKGCIE---RGVRKFN 144 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p-~ld~~~L~~I~~~~~~~~iPLVlHG--------gSG~~~e~~~~~i~---~Gi~KIN 144 (192)
.|+..+.+-.|..++..+.... +.=.+.|+++.+.....+|.|.++= .-..+.+++.+.++ ..-.+++
T Consensus 96 lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v~~~~~~i~ 175 (254)
T TIGR03234 96 LGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDVGRENLKLQ 175 (254)
T ss_pred hCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHhCCCCEeEe
Confidence 8999888766654433211000 1112345666555555689999972 22345566666553 3567888
Q ss_pred cchHHHH
Q 029526 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+++.-..
T Consensus 176 ~D~~h~~ 182 (254)
T TIGR03234 176 YDLYHMQ 182 (254)
T ss_pred eehhhhh
Confidence 8876543
No 247
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.35 E-value=8.2 Score=33.55 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCHHHHHHHhhhhCCcEEE---EecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 65 TDVNQAEEFIDETDIDALA---VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LA---vaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
-||--|++ +++-||.++= --||+-.|.- +...|+.|.+.. ++|+++-+|-|.|.+ ...+.++|..
T Consensus 132 ~D~v~akr-L~d~GcaavMPlgsPIGSg~Gi~-------n~~~l~~i~~~~---~vPvIvDAGiG~pSd-aa~AMElG~d 199 (247)
T PF05690_consen 132 DDPVLAKR-LEDAGCAAVMPLGSPIGSGRGIQ-------NPYNLRIIIERA---DVPVIVDAGIGTPSD-AAQAMELGAD 199 (247)
T ss_dssp S-HHHHHH-HHHTT-SEBEEBSSSTTT---SS-------THHHHHHHHHHG---SSSBEEES---SHHH-HHHHHHTT-S
T ss_pred CCHHHHHH-HHHCCCCEEEecccccccCcCCC-------CHHHHHHHHHhc---CCcEEEeCCCCCHHH-HHHHHHcCCc
Confidence 35666666 5678887754 4677776653 456688898888 699999999998876 8889999999
Q ss_pred EeecchHHH
Q 029526 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=|=++|.+.
T Consensus 200 aVLvNTAiA 208 (247)
T PF05690_consen 200 AVLVNTAIA 208 (247)
T ss_dssp EEEESHHHH
T ss_pred eeehhhHHh
Confidence 999999884
No 248
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=87.26 E-value=11 Score=35.99 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=80.8
Q ss_pred CCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHHHHHhh
Q 029526 7 GFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 7 GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
|..-|++-.|.- +.+|+++..++.+++|+..|.. | +. +.||. ..|||+-+.++++
T Consensus 181 ~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v--~f----~~EDa--------~Rtd~efl~~~~~ 246 (503)
T PLN03228 181 KRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDI--QF----GCEDG--------GRSDKEFLCKILG 246 (503)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE--Ee----ccccc--------cccCHHHHHHHHH
Confidence 556677665543 4688999999999999999863 2 11 22332 4688888777765
Q ss_pred ---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 76 ---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 76 ---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
+-|+|.+.+ --.-|.-. |.-=.++++.+++.+... ++||-+|+ ..|+.-...-.|+..|+..|+.
T Consensus 247 ~a~~~Gad~I~l--~DTvG~~t---P~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 247 EAIKAGATSVGI--ADTVGINM---PHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred HHHhcCCCEEEE--ecCCCCCC---HHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 468997644 44444432 443456667777665321 36777765 5688888889999999999874
No 249
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=87.09 E-value=10 Score=32.46 Aligned_cols=115 Identities=20% Similarity=0.270 Sum_probs=83.6
Q ss_pred hhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEE
Q 029526 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALA 83 (192)
Q Consensus 4 i~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 83 (192)
.++|.+-|.||+..-|=-++ --.+++...|..|.-.=|. -+++||+.- ..+.|+|.
T Consensus 95 ~~~Ga~IIA~DaT~R~RP~~--~~~~~i~~~k~~~~l~MAD-------------------~St~ee~l~-a~~~G~D~-- 150 (229)
T COG3010 95 AEAGADIIAFDATDRPRPDG--DLEELIARIKYPGQLAMAD-------------------CSTFEEGLN-AHKLGFDI-- 150 (229)
T ss_pred HHCCCcEEEeecccCCCCcc--hHHHHHHHhhcCCcEEEec-------------------cCCHHHHHH-HHHcCCcE--
Confidence 56899999999988865554 3456666666555444333 245566654 66889997
Q ss_pred EecCcCCCCCCCC---CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 84 VCIGNVHGKYPSS---GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 84 vaiGt~HG~y~~~---~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
|||.--.|.+. .-.-||++++++.+ . ++|+.--|.--.| ++.+++++.|+.-|=|++.+
T Consensus 151 --IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~---~~~vIAEGr~~tP-~~Ak~a~~~Ga~aVvVGsAI 212 (229)
T COG3010 151 --IGTTLSGYTGYTEKPTEPDFQLVKQLSD-A---GCRVIAEGRYNTP-EQAKKAIEIGADAVVVGSAI 212 (229)
T ss_pred --EecccccccCCCCCCCCCcHHHHHHHHh-C---CCeEEeeCCCCCH-HHHHHHHHhCCeEEEECccc
Confidence 57776667651 23469999999987 3 6888888877655 67999999999999999876
No 250
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=86.97 E-value=6.2 Score=35.56 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=60.5
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCC-HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLK-LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld-~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..+++.+|++ .++-|+|.+- +.|.-=|.-.+. .+.+. +.++.+|.+.++ .||++.=||-+.+.. +..+..+|-
T Consensus 133 ~v~~~~~A~~-~~~~G~d~vI-~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~--~iPViAAGGI~dg~~-i~AAlalGA 207 (336)
T COG2070 133 SVITVREALK-AERAGADAVI-AQGAEAGGHRGGVDLEVSTFALVPEVVDAVD--GIPVIAAGGIADGRG-IAAALALGA 207 (336)
T ss_pred EeCCHHHHHH-HHhCCCCEEE-ecCCcCCCcCCCCCCCccHHHHHHHHHHHhc--CCCEEEecCccChHH-HHHHHHhcc
Confidence 4689999998 6688999874 456533333221 01111 567788888883 299999999987755 999999999
Q ss_pred eEeecchHHH
Q 029526 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.=|.++|.+.
T Consensus 208 ~gVq~GT~Fl 217 (336)
T COG2070 208 DGVQMGTRFL 217 (336)
T ss_pred HHHHhhhhhh
Confidence 9999999884
No 251
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=86.93 E-value=4.9 Score=28.29 Aligned_cols=70 Identities=11% Similarity=0.271 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
..++++++.++++....|.+-+.+.-..+ =-++.++.|++... .+|+++.+.... .+...++.+.|+..
T Consensus 28 ~~~~~~~~~~~~~~~~~d~iiid~~~~~~--------~~~~~~~~i~~~~~--~~~ii~~t~~~~-~~~~~~~~~~g~~~ 96 (112)
T PF00072_consen 28 TASSGEEALELLKKHPPDLIIIDLELPDG--------DGLELLEQIRQINP--SIPIIVVTDEDD-SDEVQEALRAGADD 96 (112)
T ss_dssp EESSHHHHHHHHHHSTESEEEEESSSSSS--------BHHHHHHHHHHHTT--TSEEEEEESSTS-HHHHHHHHHTTESE
T ss_pred EECCHHHHHHHhcccCceEEEEEeeeccc--------cccccccccccccc--cccEEEecCCCC-HHHHHHHHHCCCCE
Confidence 35789999999999999999998544431 13577889987763 699999996665 56688888999764
Q ss_pred e
Q 029526 143 F 143 (192)
Q Consensus 143 I 143 (192)
+
T Consensus 97 ~ 97 (112)
T PF00072_consen 97 Y 97 (112)
T ss_dssp E
T ss_pred E
Confidence 3
No 252
>PRK01060 endonuclease IV; Provisional
Probab=86.83 E-value=5.8 Score=33.61 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.2
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGA 124 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGg 124 (192)
-+.+++.+.+++-|.|.+=+.+++-|... .+.++.+.++++++...+.++. ++.|+.
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~~---~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~ 71 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQWK---RKPLEELNIEAFKAACEKYGISPEDILVHAP 71 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCc---CCCCCHHHHHHHHHHHHHcCCCCCceEEecc
Confidence 34578888888888888888887776432 1456666777777766555555 777775
No 253
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=86.67 E-value=17 Score=32.02 Aligned_cols=132 Identities=10% Similarity=0.061 Sum_probs=79.3
Q ss_pred hhhhcCCCEeEe-eC---------------CCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCC
Q 029526 2 EAIVLGFDSLMV-DG---------------SHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLT 65 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~---------------S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T 65 (192)
+.+++|..-|.+ |. ..+|.+|-+++.+.+++....-++.|=|=.-..-. -.
T Consensus 100 ~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-------------~~ 166 (285)
T TIGR02320 100 KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-------------GK 166 (285)
T ss_pred HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-------------cC
Confidence 457889999999 53 24688998888887776643323333222111100 01
Q ss_pred CHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 66 DVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 66 ~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
..++|.+- ..+-|.|++-|- + +..+.+-++++.+.++. .++||++..+. .|.-.++++-++|+
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~-------~----~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~-~~~~~~~eL~~lG~ 234 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIH-------S----RKKDPDEILEFARRFRNHYPRTPLVIVPTS-YYTTPTDEFRDAGI 234 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec-------C----CCCCHHHHHHHHHHhhhhCCCCCEEEecCC-CCCCCHHHHHHcCC
Confidence 23444332 336899999874 1 11244556666555531 14799876542 22224677777899
Q ss_pred eEeecchHHHHHHHHHhc
Q 029526 141 RKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 141 ~KINi~T~l~~a~~~~~~ 158 (192)
+.|-+++.+..+.+.+++
T Consensus 235 ~~v~~~~~~~~aa~~a~~ 252 (285)
T TIGR02320 235 SVVIYANHLLRAAYAAMQ 252 (285)
T ss_pred CEEEEhHHHHHHHHHHHH
Confidence 999999888888877765
No 254
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=86.54 E-value=10 Score=32.82 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=68.3
Q ss_pred hhhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
..++.|.+.+.+=|| .|+.+|-.+..+.+++.+.. .+.|=+=+|.. ...+.-+-.+.+++
T Consensus 30 ~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~~--------------~~~~~i~~a~~a~~ 94 (292)
T PRK03170 30 YLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-RVPVIAGTGSN--------------STAEAIELTKFAEK 94 (292)
T ss_pred HHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-CCcEEeecCCc--------------hHHHHHHHHHHHHH
Confidence 457889999998888 58999999999999998752 23332111110 00111223344667
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
.|+|.+.+.--. |....++==++-.++|.+.+ ++|+++. -|..++.+.+++..+.
T Consensus 95 ~G~d~v~~~pP~----~~~~~~~~i~~~~~~ia~~~---~~pv~lYn~P~~~g~~l~~~~~~~L~~~ 154 (292)
T PRK03170 95 AGADGALVVTPY----YNKPTQEGLYQHFKAIAEAT---DLPIILYNVPGRTGVDILPETVARLAEH 154 (292)
T ss_pred cCCCEEEECCCc----CCCCCHHHHHHHHHHHHhcC---CCCEEEEECccccCCCCCHHHHHHHHcC
Confidence 899988875321 21101111122234454444 6999998 4566888888888654
No 255
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=86.44 E-value=4 Score=34.69 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=52.1
Q ss_pred CHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+..+..+.+++.|+|.|-+ |..|++ +..|++.+++++ + ++|++-=|+-- +.++..+++.+|..=|-+
T Consensus 153 ~~~~la~~l~~aG~d~ihv-----~~~~~g--~~ad~~~I~~i~--~---~ipVIgnGgI~-s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 153 DDEELARLIEKAGADIIHV-----DAMDPG--NHADLKKIRDIS--T---ELFIIGNNSVT-TIESAKEMFSYGADMVSV 219 (233)
T ss_pred CHHHHHHHHHHhCCCEEEE-----CcCCCC--CCCcHHHHHHhc--C---CCEEEEECCcC-CHHHHHHHHHcCCCEEEE
Confidence 3445556688899998754 455653 567899888886 4 69999877655 446688888999888888
Q ss_pred chH
Q 029526 146 NTE 148 (192)
Q Consensus 146 ~T~ 148 (192)
++.
T Consensus 220 GR~ 222 (233)
T cd02911 220 ARA 222 (233)
T ss_pred cCC
Confidence 876
No 256
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.28 E-value=18 Score=32.10 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCC-------------CCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHH
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHG-------------KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAE 130 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG-------------~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e 130 (192)
++++.+..+.+++.|+|.+.+.-.+... .|+ .|.+...-|+.|++..+..++|+.-=||--.++|
T Consensus 176 ~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~gls--g~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLS--TPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCC--CchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 3566777777889999999875332111 011 1222222233333332223699998887766655
Q ss_pred HHHHHHhcCCeEeecchHHHH
Q 029526 131 LIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 131 ~~~~~i~~Gi~KINi~T~l~~ 151 (192)
..+++.+|..=|-++|.+..
T Consensus 254 -a~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 254 -VIKMLLAGADVVMIASALLR 273 (334)
T ss_pred -HHHHHHcCCCceeeehHHhh
Confidence 77777899999999999876
No 257
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=86.26 E-value=1.6 Score=38.61 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=40.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++.++ .++++++.+. -++.+|+- || -+++.+.+|. +|||
T Consensus 204 ea~~agaDiI~LD--n~~~e~----l~~av~~~~~~~~~~~leaS----GG--------------I~~~ni~~yA-~tGv 258 (284)
T PRK06096 204 AALRAQPDVLQLD--KFSPQQ----ATEIAQIAPSLAPHCTLSLA----GG--------------INLNTLKNYA-DCGI 258 (284)
T ss_pred HHHHcCCCEEEEC--CCCHHH----HHHHHHHhhccCCCeEEEEE----CC--------------CCHHHHHHHH-hcCC
Confidence 6899999999999 455443 4566666653 24555543 11 3456777766 8999
Q ss_pred cEEEEecCcCC
Q 029526 80 DALAVCIGNVH 90 (192)
Q Consensus 80 D~LAvaiGt~H 90 (192)
|.+ ++|..|
T Consensus 259 D~I--s~gal~ 267 (284)
T PRK06096 259 RLF--ITSAPY 267 (284)
T ss_pred CEE--EECccc
Confidence 998 556553
No 258
>PRK09875 putative hydrolase; Provisional
Probab=86.25 E-value=7.9 Score=34.19 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=76.2
Q ss_pred hcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH-HHHHhh-------h
Q 029526 5 VLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ-AEEFID-------E 76 (192)
Q Consensus 5 ~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee-a~~Fv~-------~ 76 (192)
++|.++| +|.+..-+--|+...+++.+ +-|+.|=+--|.-- +...... -.-.++++ |..|++ .
T Consensus 45 ~~Gg~ti-Vd~T~~g~GRd~~~l~~is~---~tgv~Iv~~TG~y~--~~~~p~~---~~~~~~e~la~~~i~ei~~Gi~g 115 (292)
T PRK09875 45 TRGVRNV-IEMTNRYMGRNAQFMLDVMR---ETGINVVACTGYYQ--DAFFPEH---VATRSVQELAQEMVDEIEQGIDG 115 (292)
T ss_pred HhCCCeE-EecCCCccCcCHHHHHHHHH---HhCCcEEEcCcCCC--CccCCHH---HhcCCHHHHHHHHHHHHHHhhcc
Confidence 4577766 78888878777776665544 45677666555432 1111100 01123333 555554 4
Q ss_pred hCCcEEEE-ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC-CCHHHHHHHHhcCC--eEeecc
Q 029526 77 TDIDALAV-CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-LSAELIKGCIERGV--RKFNVN 146 (192)
Q Consensus 77 TgvD~LAv-aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-~~~e~~~~~i~~Gi--~KINi~ 146 (192)
|||-+=.+ =||+.-|...+ ...+.|+....+..+++.|+..|-+.| .+.++++.+.+.|+ .||-++
T Consensus 116 t~ikaGvIGeiG~~~~~it~----~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~ 185 (292)
T PRK09875 116 TELKAGIIAEIGSSEGKITP----LEEKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVG 185 (292)
T ss_pred CCCcccEEEEEecCCCCCCH----HHHHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEe
Confidence 66544445 56666553322 233445554444445689999996666 77889999999999 888764
No 259
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=86.19 E-value=18 Score=30.79 Aligned_cols=137 Identities=17% Similarity=0.130 Sum_probs=88.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCc-------------c------------
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-------------V------------ 57 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~-------------~------------ 57 (192)
|.+.|.+-+|+=||.--- +++..|.++++.... .++|=-|.|.......+.. .
T Consensus 21 ~~~~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~ 98 (219)
T cd02812 21 AEESGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAAPE 98 (219)
T ss_pred HHhcCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHHHH
Confidence 455899999999998332 777777666666555 6888878887653111000 0
Q ss_pred ------------------------c--cccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-CCCCCCHHHHHHHHh
Q 029526 58 ------------------------E--DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPS-SGPNLKLDLLKDLHA 110 (192)
Q Consensus 58 ------------------------~--~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~ 110 (192)
. .......+|+++..|..... -+| .|=+|-. .....+.+.++++++
T Consensus 99 ~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae------~~g-~~ivyLe~SG~~~~~e~I~~v~~ 171 (219)
T cd02812 99 VGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAE------YLG-MPIVYLEYSGAYGPPEVVRAVKK 171 (219)
T ss_pred hccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHH------HcC-CeEEEeCCCCCcCCHHHHHHHHH
Confidence 0 00011356777766654321 244 5544422 124478999999998
Q ss_pred hhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 111 LSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 111 ~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.+. ++||..=||- -+.|+.+++.++|..+|-++|.+-.
T Consensus 172 ~~~--~~pl~vGGGI-rs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 172 VLG--DTPLIVGGGI-RSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred hcC--CCCEEEeCCC-CCHHHHHHHHHcCCCEEEECchhhC
Confidence 763 4999995533 3668899999999999999998753
No 260
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.17 E-value=2.6 Score=36.89 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=57.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEe--------c-------------CcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEE
Q 029526 65 TDVNQAEEFIDETDIDALAVC--------I-------------GNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLV 120 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAva--------i-------------Gt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLV 120 (192)
++..+..+-+++.|+|.+.+. + .|.+|.|.+ |.+ .++.+.++++.+. .++|++
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG--~a~~p~~l~~v~~~~~~~~-~~ipIi 256 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG--PAVKPIALRAVSQIARAPE-PGLPIS 256 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC--CCcchHHHHHHHHHHHhcC-CCCcEE
Confidence 344444444668899998742 1 456778875 333 4777888887772 149999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 121 LHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
-=||--..++ +.+++.+|..=|-++|.+.
T Consensus 257 g~GGI~~~~d-a~~~l~aGA~~V~i~ta~~ 285 (299)
T cd02940 257 GIGGIESWED-AAEFLLLGASVVQVCTAVM 285 (299)
T ss_pred EECCCCCHHH-HHHHHHcCCChheEceeec
Confidence 9998776655 6667789999999998874
No 261
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=86.08 E-value=3.6 Score=38.07 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=73.6
Q ss_pred hhh-cCCC-EeEeeCC-------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccc------------cccC--C--CCCcc
Q 029526 3 AIV-LGFD-SLMVDGS-------HLPFKDNISHTKYISFLAHSKGMLVEAELGR------------LSGT--E--DGLTV 57 (192)
Q Consensus 3 ai~-~GFt-SVM~D~S-------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~------------i~g~--e--~~~~~ 57 (192)
+++ .|+. .+++|+- .++.++=++.-+++-+.+.++++.+|.=+-. +-.. + -....
T Consensus 221 ~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI 300 (408)
T TIGR01502 221 KLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEI 300 (408)
T ss_pred HhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 454 5665 8999998 4577777776677766666788899965521 1100 0 01111
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
...| ..++++++++|++.-.+|.+-+=+..+=|.+. ..+|.+.....++|..+||..
T Consensus 301 ~aDE-s~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~----------a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 301 VADE-WCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNN----------IARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred EecC-CCCCHHHHHHHHHhCCCCEEEeCccccCCHHH----------HHHHHHHHHHcCCEEEEeCCC
Confidence 1122 46889999999999999999998776655543 244555544458999999854
No 262
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.02 E-value=22 Score=30.88 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=81.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|.+.|.+= .||+|| ..++.+.|+++|+. +..+- ..-|+++..+...+...=-.
T Consensus 114 ~~~~aGvdgviip--DLP~ee----~~~~~~~~~~~gi~----~I~lv------------~PtT~~eri~~i~~~a~gFI 171 (263)
T CHL00200 114 KISQAGVKGLIIP--DLPYEE----SDYLISVCNLYNIE----LILLI------------APTSSKSRIQKIARAAPGCI 171 (263)
T ss_pred HHHHcCCeEEEec--CCCHHH----HHHHHHHHHHcCCC----EEEEE------------CCCCCHHHHHHHHHhCCCcE
Confidence 5788999988874 467766 66889999998862 23321 12355666777776665334
Q ss_pred EEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKAYM 154 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a~~ 154 (192)
..||. -|..-. ...+. .+.++++++.+ +.|+++ |=|++ .|+++++...|..=+=++|.+-+.+.
T Consensus 172 Y~vS~---~GvTG~-~~~~~~~~~~~i~~ir~~t---~~Pi~v--GFGI~~~e~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 172 YLVST---TGVTGL-KTELDKKLKKLIETIKKMT---NKPIIL--GFGISTSEQIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EEEcC---CCCCCC-CccccHHHHHHHHHHHHhc---CCCEEE--ECCcCCHHHHHHHHhcCCCEEEECHHHHHHHH
Confidence 44442 222211 12232 23455666655 699999 56887 89999999999999999999977664
No 263
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=85.79 E-value=6.8 Score=36.71 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=76.3
Q ss_pred hhhhcCCCEe-EeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH----HHHHHHhhh
Q 029526 2 EAIVLGFDSL-MVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV----NQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSV-M~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p----eea~~Fv~~ 76 (192)
+|++.|-+.+ -||+ |..--|++ ..++.++.+|..+-+.|-.--. ..-+. +-|++ +.+
T Consensus 106 ka~~nGidvfRiFDA--lND~RNl~---~ai~a~kk~G~h~q~~i~YT~s------------PvHt~e~yv~~ake-l~~ 167 (472)
T COG5016 106 KAAENGIDVFRIFDA--LNDVRNLK---TAIKAAKKHGAHVQGTISYTTS------------PVHTLEYYVELAKE-LLE 167 (472)
T ss_pred HHHhcCCcEEEechh--ccchhHHH---HHHHHHHhcCceeEEEEEeccC------------CcccHHHHHHHHHH-HHH
Confidence 4566665554 3564 33344554 4456667778766555433210 01112 33444 447
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHhcCCeEee
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.|||++++ =-+-|.- .|.--+++++.|++.+ ++|+.|| -.||++.--+-+|++.|+--|-
T Consensus 168 ~g~DSIci--KDmaGll---tP~~ayelVk~iK~~~---~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 168 MGVDSICI--KDMAGLL---TPYEAYELVKAIKKEL---PVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred cCCCEEEe--ecccccC---ChHHHHHHHHHHHHhc---CCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 89998875 3444443 4777899999999998 6888875 6899999999999999998764
No 264
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=85.59 E-value=23 Score=30.65 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=68.9
Q ss_pred hhhhc-CCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH---HHH
Q 029526 2 EAIVL-GFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ---AEE 72 (192)
Q Consensus 2 ~ai~~-GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee---a~~ 72 (192)
..++. |.+.|++=|| .|+.+|-.+.++.+++.+.. .+.| |.|... ++.++ ..+
T Consensus 29 ~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~-~~~v------iagv~~-----------~~~~~ai~~a~ 90 (288)
T cd00954 29 YLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG-KVTL------IAHVGS-----------LNLKESQELAK 90 (288)
T ss_pred HHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCeE------EeccCC-----------CCHHHHHHHHH
Confidence 35677 9999999888 57889999999998888753 2333 222211 22233 344
Q ss_pred HhhhhCCcEEEEecCcCCCCCC-CCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHh
Q 029526 73 FIDETDIDALAVCIGNVHGKYP-SSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIE 137 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~-~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~ 137 (192)
++++.|+|++.+.-= .|- .....+ ++-.++|.+.+. ++|+++. .|..++.+.+.+..+
T Consensus 91 ~a~~~Gad~v~~~~P----~y~~~~~~~i-~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 91 HAEELGYDAISAITP----FYYKFSFEEI-KDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHcCCCEEEEeCC----CCCCCCHHHH-HHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 567899999876421 121 110111 223344544441 5899987 688899999988875
No 265
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=85.58 E-value=5.9 Score=39.59 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=85.0
Q ss_pred hhh-hcCCCE--eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHHHhh
Q 029526 2 EAI-VLGFDS--LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEEFID 75 (192)
Q Consensus 2 ~ai-~~GFtS--VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~Fv~ 75 (192)
+|+ ++|+.. ||| |+=.+.+..+++++.++..|... .++... ...+.-+| +.+.++++
T Consensus 621 ral~d~G~~~~~Im~-----PmV~s~eE~~~~~~~~~~~g~~~---------~~~~~~---vg~mIEtp~av~~~d~Ia~ 683 (782)
T TIGR01418 621 RVREEMGLTNVEVMI-----PFVRTPEEGKRALEIMAEEGLRR---------GKNGLE---VYVMCEVPSNALLADEFAK 683 (782)
T ss_pred HHHHhcCCCCeEEEe-----cCCCCHHHHHHHHHHHHHhCccc---------cccCcE---EEEEECcHHHHHHHHHHHH
Confidence 566 789988 886 88888888888889888766331 111111 11233344 45667776
Q ss_pred hhCCcEEEEecCcC------CCCCCCC------CCCCCHHHHHHHHh---hhccCCccEEeecCCC-CCHHHHHHHHhcC
Q 029526 76 ETDIDALAVCIGNV------HGKYPSS------GPNLKLDLLKDLHA---LSSKKGVLLVLHGASG-LSAELIKGCIERG 139 (192)
Q Consensus 76 ~TgvD~LAvaiGt~------HG~y~~~------~p~ld~~~L~~I~~---~~~~~~iPLVlHGgSG-~~~e~~~~~i~~G 139 (192)
. ||++. |||. -|....+ ....+...++.|+. ..++.++|+-++|.-+ .+++.+...+..|
T Consensus 684 ~--vDfis--IGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G 759 (782)
T TIGR01418 684 E--FDGFS--IGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEG 759 (782)
T ss_pred h--CCEEE--ECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcC
Confidence 6 99765 4543 2221100 12235555555554 4444689999988644 3778899999999
Q ss_pred CeEeecchHHHHHHHHHh
Q 029526 140 VRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 140 i~KINi~T~l~~a~~~~~ 157 (192)
+..+.++.+..-.....+
T Consensus 760 ~~~ls~~~d~~~~~k~~i 777 (782)
T TIGR01418 760 IDSISLNPDAVLRTRLQV 777 (782)
T ss_pred CCEEEECcchHHHHHHHH
Confidence 999999988765554444
No 266
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.57 E-value=5.3 Score=33.96 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=78.1
Q ss_pred hhhhcCCCEe--EeeCCCCCH--HHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSL--MVDGSHLPF--KDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSV--M~D~S~l~~--eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
.|-++||+.| .+|.+..-. ...-...+++.+.+.++ ++.+-...+....-.+.. .+.....+..-..+.++.++
T Consensus 18 ~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~r~~~~~~~~~~i~~A~~ 96 (279)
T cd00019 18 RAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPD-KEKREKSIERLKDEIERCEE 96 (279)
T ss_pred HHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 4668899998 445442210 00113445666666666 666555444322111110 01112345556778888889
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CC----CCCHHHHHHHHh----cCCeEeecc
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--AS----GLSAELIKGCIE----RGVRKFNVN 146 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gS----G~~~e~~~~~i~----~Gi~KINi~ 146 (192)
.|++.+.+-.|..-+......-..=.+.|+++.+.....+|.|+++= .. ..+.+++.+.++ .--.+++++
T Consensus 97 lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD 176 (279)
T cd00019 97 LGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCID 176 (279)
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEE
Confidence 99998766444321100000001123555666665555689999954 33 234455666554 456888888
Q ss_pred hHHHH
Q 029526 147 TEVRK 151 (192)
Q Consensus 147 T~l~~ 151 (192)
+.-..
T Consensus 177 ~~h~~ 181 (279)
T cd00019 177 TCHIF 181 (279)
T ss_pred hhhHH
Confidence 76643
No 267
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=85.56 E-value=5.9 Score=39.73 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=87.2
Q ss_pred hhhh-cCCCE--eEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCH---HHHHHHhh
Q 029526 2 EAIV-LGFDS--LMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV---NQAEEFID 75 (192)
Q Consensus 2 ~ai~-~GFtS--VM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~p---eea~~Fv~ 75 (192)
+|++ +|+.. ||| |+=.+.+..+++++.++..|.. ..++... ...+.-+| +.+.++++
T Consensus 628 rald~~G~~~~~Imv-----PmV~s~eEa~~~~~~~~~~g~~---------~~~~~~~---vg~MIEtp~av~~~deIa~ 690 (795)
T PRK06464 628 RVREEMGLTNVEVMI-----PFVRTVEEAEKVIELLAENGLK---------RGENGLK---VIMMCEIPSNALLAEEFLE 690 (795)
T ss_pred HHHHhcCCCCeEEEe-----cCCCCHHHHHHHHHHHHHhCcc---------ccccCcE---EEEEEcCHHHHHHHHHHHH
Confidence 5777 78877 886 8888888888888888865432 1111111 12233444 45667776
Q ss_pred hhCCcEEEEecC--c--CCCCCCCC------CCCCCHHHHHHHHhh---hccCCccEEeecCCCCC-HHHHHHHHhcCCe
Q 029526 76 ETDIDALAVCIG--N--VHGKYPSS------GPNLKLDLLKDLHAL---SSKKGVLLVLHGASGLS-AELIKGCIERGVR 141 (192)
Q Consensus 76 ~TgvD~LAvaiG--t--~HG~y~~~------~p~ld~~~L~~I~~~---~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~ 141 (192)
. ||++.|.-. + .-|....+ ....+...++.|+.. .+..++|+-++|-..-. ++.+...+..|+.
T Consensus 691 ~--vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~ 768 (795)
T PRK06464 691 Y--FDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGID 768 (795)
T ss_pred h--CCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCC
Confidence 6 997764332 1 13321100 122355666666543 44457999998855555 6889999999999
Q ss_pred EeecchHHHHHHHHHhc
Q 029526 142 KFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 142 KINi~T~l~~a~~~~~~ 158 (192)
.+.++.+........++
T Consensus 769 ~ls~~~d~~~~~k~~i~ 785 (795)
T PRK06464 769 SISLNPDAVVDTWLAVA 785 (795)
T ss_pred EEEEcchhHHHHHHHHH
Confidence 99999998766665554
No 268
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=85.53 E-value=7.6 Score=32.42 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
.+|+|+.+ ..+.|+|.+.+ |+. ..+-++.|+.++.... .++|+|-=| |++.+++....+.|+.=+=
T Consensus 112 ~t~~E~~~-A~~~Gad~vk~--------Fpa--~~~G~~~l~~l~~~~~-~~ipvvaiG--GI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 112 ATPTEAFA-ALRAGAQALKL--------FPA--SQLGPAGIKALRAVLP-PDVPVFAVG--GVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred CCHHHHHH-HHHcCCCEEEE--------CCC--CCCCHHHHHHHHhhcC-CCCeEEEEC--CCCHHHHHHHHHCCCeEEE
Confidence 57788776 44679999985 553 4477888898887762 139999999 7899999999999999999
Q ss_pred cchHHHH
Q 029526 145 VNTEVRK 151 (192)
Q Consensus 145 i~T~l~~ 151 (192)
+.+.+..
T Consensus 178 v~s~l~~ 184 (206)
T PRK09140 178 LGSALYR 184 (206)
T ss_pred EehHhcc
Confidence 9999854
No 269
>PRK15108 biotin synthase; Provisional
Probab=85.20 E-value=6.6 Score=35.28 Aligned_cols=88 Identities=14% Similarity=0.212 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 63 KLTDVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 63 ~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.+-+|||..+.++ +.|+.-+- +|+. .. +.+..+++.+.++-+.+++.+++++++=| .++.+++++..+.|
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i~--i~~~---g~-~p~~~~~e~i~~~i~~ik~~~i~v~~s~G-~ls~e~l~~LkeAG 146 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRFC--MGAA---WK-NPHERDMPYLEQMVQGVKAMGLETCMTLG-TLSESQAQRLANAG 146 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEE--EEec---CC-CCCcchHHHHHHHHHHHHhCCCEEEEeCC-cCCHHHHHHHHHcC
Confidence 3579999888876 46887763 3332 11 12456677776665555444566665533 68999999999999
Q ss_pred CeEeecchHHHHHHHHHh
Q 029526 140 VRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 140 i~KINi~T~l~~a~~~~~ 157 (192)
+..+|++=+....+...+
T Consensus 147 ld~~n~~leT~p~~f~~I 164 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNI 164 (345)
T ss_pred CCEEeeccccChHhcCCC
Confidence 999999655544443333
No 270
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.17 E-value=18 Score=30.98 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=79.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+.+++|.+-|.+-...++ |....+++.++..+.=+++-.-=|.+-- . .+. +..-.+|.+..+.+++-|+.-
T Consensus 90 ~~l~~Ga~rvvigT~a~~---~p~~l~~~~~~~~~ivvslD~k~g~v~~-~----gw~-~~~~~~~~e~~~~~~~~g~~~ 160 (241)
T PRK14114 90 KLRKLGYRRQIVSSKVLE---DPSFLKFLKEIDVEPVFSLDTRGGKVAF-K----GWL-AEEEIDPVSLLKRLKEYGLEE 160 (241)
T ss_pred HHHHCCCCEEEECchhhC---CHHHHHHHHHhCCCEEEEEEccCCEEee-C----CCe-ecCCCCHHHHHHHHHhcCCCE
Confidence 467889999888555543 4445555533322211333332232210 0 010 123357888777788888755
Q ss_pred EEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-----C-CeEeecchHH
Q 029526 82 LAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-----G-VRKFNVNTEV 149 (192)
Q Consensus 82 LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-----G-i~KINi~T~l 149 (192)
+=+. |... |.. .-.|+++++++.+.+ ++|+.-=||-+..+| |.++.+. | +.-+=+++.|
T Consensus 161 ii~tdI~rd-Gt~----~G~d~el~~~l~~~~---~~pviasGGv~s~~D-l~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 161 IVHTEIEKD-GTL----QEHDFSLTRKIAIEA---EVKVFAAGGISSENS-LKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred EEEEeechh-hcC----CCcCHHHHHHHHHHC---CCCEEEECCCCCHHH-HHHHHhcccccCCcEEEEEEehHH
Confidence 5443 4322 222 225899999999887 699999999887655 7777775 5 8888888876
No 271
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.01 E-value=15 Score=31.96 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=68.3
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.--|+.+-.++.. .++.+++. +..++.|. .+++|+.+.+ +.|+|.+.+
T Consensus 151 ~d~ilikdnHi~~~g~~~~---~v~~~r~~~~~~~~I~vev-------------------~t~eea~~A~-~~gaD~I~l 207 (269)
T cd01568 151 SDAVLIKDNHIAAAGGITE---AVKRARAAAPFEKKIEVEV-------------------ETLEEAEEAL-EAGADIIML 207 (269)
T ss_pred cceeeecHhHHHHhCCHHH---HHHHHHHhCCCCCeEEEec-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 6789988888776666553 33444432 23344431 3467888876 468998886
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
||+ ..+.++++.+..+. .++|++.=| |+..+.+....+.|+.=|=++..
T Consensus 208 --d~~-----------~~e~l~~~v~~i~~~~~i~i~asG--GIt~~ni~~~a~~Gad~Isvgal 257 (269)
T cd01568 208 --DNM-----------SPEELKEAVKLLKGLPRVLLEASG--GITLENIRAYAETGVDVISTGAL 257 (269)
T ss_pred --CCC-----------CHHHHHHHHHHhccCCCeEEEEEC--CCCHHHHHHHHHcCCCEEEEcHH
Confidence 332 23556665555432 258999988 78899999999999988876543
No 272
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=84.96 E-value=11 Score=32.71 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=67.9
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.--|+.+--++.. -++.+++. +..++.|. .+++|+++.+ +.|+|.+.+
T Consensus 152 ~d~vlikdnHi~~~g~i~~---~v~~~r~~~~~~~~Igvev-------------------~s~eea~~A~-~~gaDyI~l 208 (268)
T cd01572 152 SDAVLIKDNHIAAAGSITE---AVRRARAAAPFTLKIEVEV-------------------ETLEQLKEAL-EAGADIIML 208 (268)
T ss_pred cceeeeehHHHHHhCCHHH---HHHHHHHhCCCCCeEEEEE-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5688888777766555522 23333332 23344431 2457888865 689999876
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
||+ .++.|+++.+..+. ++|++-=| |+..+.+....+.|+.=|=+++.
T Consensus 209 --d~~-----------~~e~l~~~~~~~~~-~ipi~AiG--GI~~~ni~~~a~~Gvd~Iav~sl 256 (268)
T cd01572 209 --DNM-----------SPEELREAVALLKG-RVLLEASG--GITLENIRAYAETGVDYISVGAL 256 (268)
T ss_pred --CCc-----------CHHHHHHHHHHcCC-CCcEEEEC--CCCHHHHHHHHHcCCCEEEEEee
Confidence 333 35667777665532 48999999 78899999999999988777654
No 273
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.76 E-value=3 Score=36.85 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=46.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|--.. +..++.+++.+.. ..+|+- | =-+++.+.+|. +||||.
T Consensus 209 ea~~~gaDiI~LDn~s~------e~l~~av~~~~~~-~~leaS----G--------------GI~~~ni~~yA-~tGVD~ 262 (281)
T PRK06106 209 EALELGVDAVLLDNMTP------DTLREAVAIVAGR-AITEAS----G--------------RITPETAPAIA-ASGVDL 262 (281)
T ss_pred HHHHcCCCEEEeCCCCH------HHHHHHHHHhCCC-ceEEEE----C--------------CCCHHHHHHHH-hcCCCE
Confidence 68999999999996433 4566777766543 335443 1 13457778876 899998
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+.++ . .|.+ .|.+||.
T Consensus 263 Is~G--a---lths-a~~~Dis 278 (281)
T PRK06106 263 ISVG--W---LTHS-APVLDIG 278 (281)
T ss_pred EEeC--h---hhcC-CCccccc
Confidence 7665 3 3443 3667775
No 274
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=84.63 E-value=20 Score=31.66 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhhccCCccE--Eee--cCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 101 KLDLLKDLHALSSKKGVLL--VLH--GASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 101 d~~~L~~I~~~~~~~~iPL--VlH--GgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+.+-++++.+.+ ++|| .+- |.+ |.-.++++-++|++-|-++..+..+...+++
T Consensus 185 ~~e~i~~~~~~i---~~Pl~~n~~~~~~~--p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~ 241 (285)
T TIGR02317 185 SLEEFRQFAKAV---KVPLLANMTEFGKT--PLFTADELREAGYKMVIYPVTAFRAMNKAAE 241 (285)
T ss_pred CHHHHHHHHHhc---CCCEEEEeccCCCC--CCCCHHHHHHcCCcEEEEchHHHHHHHHHHH
Confidence 456666666666 6888 343 433 3334666677799999999999888888775
No 275
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=84.53 E-value=13 Score=32.41 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=53.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..||.+|.+-+.+.|+|-+==| |.-+ ...-.+++|+++.+... + .+ +==|+|+..+.+.+....|+.-+
T Consensus 127 ~~d~~~al~~l~~lG~~rILTS-----Gg~~--~a~~g~~~L~~lv~~a~--~-~~-Im~GgGV~~~Nv~~l~~tG~~~~ 195 (248)
T PRK11572 127 CANPLNALKQLADLGVARILTS-----GQQQ--DAEQGLSLIMELIAASD--G-PI-IMAGAGVRLSNLHKFLDAGVREV 195 (248)
T ss_pred cCCHHHHHHHHHHcCCCEEECC-----CCCC--CHHHHHHHHHHHHHhcC--C-CE-EEeCCCCCHHHHHHHHHcCCCEE
Confidence 4689999999999999876533 3322 13345777888877653 3 34 44567999999999999999999
Q ss_pred ecch
Q 029526 144 NVNT 147 (192)
Q Consensus 144 Ni~T 147 (192)
+.+.
T Consensus 196 H~s~ 199 (248)
T PRK11572 196 HSSA 199 (248)
T ss_pred eeCC
Confidence 8654
No 276
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.43 E-value=3.6 Score=36.14 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=47.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+-||+| .++.| ..++++++.+ -.+.||+= || -+++.+.+|. +||||.
T Consensus 204 eA~~~gaD~I~LD--~~~~e----~l~~~v~~~~-~~i~leAs----GG--------------It~~ni~~~a-~tGvD~ 257 (277)
T PRK05742 204 QALAAGADIVMLD--ELSLD----DMREAVRLTA-GRAKLEAS----GG--------------INESTLRVIA-ETGVDY 257 (277)
T ss_pred HHHHcCCCEEEEC--CCCHH----HHHHHHHHhC-CCCcEEEE----CC--------------CCHHHHHHHH-HcCCCE
Confidence 6889999999998 45555 4555555543 24666653 21 3467778876 799999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDL 104 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~ 104 (192)
++++- .|.+ .|.+||.+
T Consensus 258 Isvg~-----lt~s-~~~~D~sl 274 (277)
T PRK05742 258 ISIGA-----MTKD-VKAVDLSM 274 (277)
T ss_pred EEECh-----hhcC-Ccccceee
Confidence 98763 3444 47788763
No 277
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.23 E-value=3 Score=36.77 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+|+++|.+.||+|--. .+..++++++.++.+ +.+|+- || -+++.+.+|. +|
T Consensus 197 ~a~~agaDiI~LDn~~------~e~l~~~v~~l~~~~~~~~~~leaS----GG--------------I~~~ni~~yA-~t 251 (278)
T PRK08385 197 KAAKAGADIIMLDNMT------PEEIREVIEALKREGLRERVKIEVS----GG--------------ITPENIEEYA-KL 251 (278)
T ss_pred HHHHcCcCEEEECCCC------HHHHHHHHHHHHhcCcCCCEEEEEE----CC--------------CCHHHHHHHH-Hc
Confidence 6899999999999763 446677777766533 444443 11 2567778866 79
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|||.+.++ . .|.+ .|.+||.
T Consensus 252 GvD~Is~g--a---lt~s-a~~~Dis 271 (278)
T PRK08385 252 DVDVISLG--A---LTHS-VRNFDVS 271 (278)
T ss_pred CCCEEEeC--h---hhcC-CCccceE
Confidence 99987665 3 3443 3666664
No 278
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=84.13 E-value=16 Score=31.66 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=84.3
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|-.+|-+-|.+=.+.|+-++ .+++.++||.+|..+=.|+ .+.+|+++-+ ..|.+.
T Consensus 126 eA~~~GADaVLLI~~~L~~~~----l~~l~~~a~~lGle~lVEV-------------------h~~~El~~al-~~~a~i 181 (254)
T PF00218_consen 126 EARAAGADAVLLIAAILSDDQ----LEELLELAHSLGLEALVEV-------------------HNEEELERAL-EAGADI 181 (254)
T ss_dssp HHHHTT-SEEEEEGGGSGHHH----HHHHHHHHHHTT-EEEEEE-------------------SSHHHHHHHH-HTT-SE
T ss_pred HHHHcCCCEeehhHHhCCHHH----HHHHHHHHHHcCCCeEEEE-------------------CCHHHHHHHH-HcCCCE
Confidence 466788888888888888765 7899999999998776662 3446666644 779999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+.|..-+.| .-.+|+++..+|...+.. + .+.=--||+. .++++++.++|+.=|=|+|.+.
T Consensus 182 iGINnRdL~------tf~vd~~~~~~l~~~ip~-~--~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm 242 (254)
T PF00218_consen 182 IGINNRDLK------TFEVDLNRTEELAPLIPK-D--VIVISESGIKTPEDARRLARAGADAVLVGEALM 242 (254)
T ss_dssp EEEESBCTT------TCCBHTHHHHHHHCHSHT-T--SEEEEESS-SSHHHHHHHCTTT-SEEEESHHHH
T ss_pred EEEeCcccc------CcccChHHHHHHHhhCcc-c--eeEEeecCCCCHHHHHHHHHCCCCEEEECHHHh
Confidence 999877765 367888888888876532 2 3333456665 5889999999999999999986
No 279
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=84.12 E-value=24 Score=31.30 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=80.1
Q ss_pred hhhhcCCCEeEe-eCC------------CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH
Q 029526 2 EAIVLGFDSLMV-DGS------------HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN 68 (192)
Q Consensus 2 ~ai~~GFtSVM~-D~S------------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe 68 (192)
+.+++|..-|-| |.. -.|.+|-+++-+.+++.+..-+.-|=|=.-.... ...+
T Consensus 100 ~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~--------------~g~d 165 (294)
T TIGR02319 100 EFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARES--------------FGLD 165 (294)
T ss_pred HHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccccc--------------CCHH
Confidence 456788888887 532 1478888888888777666433333222111110 1223
Q ss_pred H----HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccE---EeecCCCCCHHHHHHHHhcCCe
Q 029526 69 Q----AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLL---VLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 69 e----a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPL---VlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
+ ++.|. +.|.|++-| || + .+.+-++++.+.+ +.|+ |+.|+ +.|.-.++++.++|++
T Consensus 166 eaI~Ra~aY~-eAGAD~ifi-----~~------~-~~~~ei~~~~~~~---~~P~~~nv~~~~-~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 166 EAIRRSREYV-AAGADCIFL-----EA------M-LDVEEMKRVRDEI---DAPLLANMVEGG-KTPWLTTKELESIGYN 228 (294)
T ss_pred HHHHHHHHHH-HhCCCEEEe-----cC------C-CCHHHHHHHHHhc---CCCeeEEEEecC-CCCCCCHHHHHHcCCc
Confidence 3 44444 589999876 23 1 2456677777766 4676 56553 4555567778888999
Q ss_pred EeecchHHHHHHHHHhc
Q 029526 142 KFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 142 KINi~T~l~~a~~~~~~ 158 (192)
-|-+.+.+..+...+++
T Consensus 229 ~v~~~~~~~~aa~~a~~ 245 (294)
T TIGR02319 229 LAIYPLSGWMAAASVLR 245 (294)
T ss_pred EEEEcHHHHHHHHHHHH
Confidence 99999999988888775
No 280
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=83.99 E-value=25 Score=29.67 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=70.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
+.++|-+.|-|=+...+ ...+++++.++++|.-+ | | . -...|+.++.+.+++.-.+|.+
T Consensus 84 ~~~~Gad~itvH~ea~~-----~~~~~~l~~ik~~G~~~----g-v-------a----l~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 84 FAKAGASQFTFHIEATE-----DDPKAVARKIREAGMKV----G-V-------A----IKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred HHHcCCCEEEEeccCCc-----hHHHHHHHHHHHCCCeE----E-E-------E----ECCCCCHHHHHHHHccchhhhH
Confidence 45566555544433321 11345667777766421 1 1 0 1134788889888755567765
Q ss_pred ---EEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 83 ---AVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 83 ---AvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++-.|.. + .... +++++++++... .+.+-.=| |+..+.++.++++|+.-+-+++.+.
T Consensus 143 l~m~v~pG~~-----g--q~~~~~~~~ki~~~~~~~~--~~~I~VdG--GI~~~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 143 LVMTVEPGFG-----G--QSFMHDMMPKVRELRKRYP--HLNIQVDG--GINLETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred HhhhcccCCC-----C--cEecHHHHHHHHHHHHhcc--cCeEEECC--CCCHHHHHHHHHcCCCEEEEchHHh
Confidence 4433322 1 2222 456666666542 35566667 7889999999999999999998764
No 281
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.98 E-value=5.7 Score=35.24 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=46.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++ .+..++.+++.+.. .+.+|+- | =-+++-+.+|. +|||
T Consensus 214 eal~~gaDiI~LD--nm~----~e~vk~av~~~~~~~~~v~ieaS----G--------------GI~~~ni~~yA-~tGv 268 (289)
T PRK07896 214 EVLAEGAELVLLD--NFP----VWQTQEAVQRRDARAPTVLLESS----G--------------GLTLDTAAAYA-ETGV 268 (289)
T ss_pred HHHHcCCCEEEeC--CCC----HHHHHHHHHHHhccCCCEEEEEE----C--------------CCCHHHHHHHH-hcCC
Confidence 6899999999999 444 44567777766433 3455543 1 13456777766 7999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.+.++ . .|.+ .|.+||.
T Consensus 269 D~Is~g--a---lt~s-a~~~Dis 286 (289)
T PRK07896 269 DYLAVG--A---LTHS-VPVLDIG 286 (289)
T ss_pred CEEEeC--h---hhcC-CCccccc
Confidence 987654 3 2443 3777775
No 282
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=83.96 E-value=2.7 Score=34.52 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=55.9
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
+-+.|-+.+++-+.. .+ .+..+.++|..+ ..+=.=+|.-. .... .......++.+++++.++
T Consensus 24 ~~~~gv~~~v~~~~~--~~----~~~~~~~la~~~-~~i~~~~G~hP---~~~~----~~~~~~~~~l~~~~~~~~---- 85 (251)
T cd01310 24 AREAGVIKIIVVGTD--LK----SSKRALELAKKY-DNVYAAVGLHP---HDAD----EHVDEDLDLLELLAANPK---- 85 (251)
T ss_pred HHHcCCCEEEEeCCC--HH----HHHHHHHHHHhC-CCeEEEEeeCc---chhh----cCCHHHHHHHHHHhcCCC----
Confidence 345677777766553 23 345566677765 21222122221 1000 000011355666666665
Q ss_pred EEecCcCCCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 83 AVCIGNVHGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
..+||-++=-+....+ ..+-++++.+-+...+.++|+++|.+++ +++.++-+.+.+
T Consensus 86 ~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~-~~~~~~l~~~~~ 143 (251)
T cd01310 86 VVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA-HEDVLEILKEYG 143 (251)
T ss_pred EEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc-hHHHHHHHHhcC
Confidence 4556554422211101 1233445554444444578888886655 566555566665
No 283
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=83.95 E-value=13 Score=31.91 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
++.|. +-|.|++-|- | + .+.+-++++.+.+ ++||++.-+.+. -.+++.-++|++-|-++..+
T Consensus 161 ~~aY~-eAGAD~ifi~-----~------~-~~~~~i~~~~~~~---~~Pl~v~~~~~~--~~~~eL~~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 161 AKAYA-EAGADMIFIP-----G------L-QSEEEIERIVKAV---DGPLNVNPGPGT--LSAEELAELGVKRVSYGNSL 222 (238)
T ss_dssp HHHHH-HTT-SEEEET-----T------S-SSHHHHHHHHHHH---SSEEEEETTSSS--S-HHHHHHTTESEEEETSHH
T ss_pred HHHHH-HcCCCEEEeC-----C------C-CCHHHHHHHHHhc---CCCEEEEcCCCC--CCHHHHHHCCCcEEEEcHHH
Confidence 34444 5899988752 2 1 3455577777777 699888774322 33455566799999999999
Q ss_pred HHHHHHHhc
Q 029526 150 RKAYMDSLS 158 (192)
Q Consensus 150 ~~a~~~~~~ 158 (192)
..+.+.+++
T Consensus 223 ~~aa~~a~~ 231 (238)
T PF13714_consen 223 LRAAMKAMR 231 (238)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877664
No 284
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.92 E-value=2.5 Score=37.34 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCc-EEEEecCcCCCCCCCCCCCCCH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDID-ALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD-~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
++++.+.|++.+..| |.. ...+.+.++..+ ++.+.. .|.++-| |-.|.+ ..+=.
T Consensus 6 ~k~il~~A~~~~yaV----~Af--------------N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g--~~~~~ 63 (284)
T PRK09195 6 TKQMLNNAQRGGYAV----PAF--------------NIHNLETMQVVVETAAELHSPVIIAGTPG--TFSYAG--TEYLL 63 (284)
T ss_pred HHHHHHHHHHcCceE----EEE--------------EeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhhCC--HHHHH
Confidence 567777777766655 222 123444444443 334432 2333333 334432 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+.. +||.+||--.|.+.|.+++|++.|..-|-++
T Consensus 64 ~~~~~~A~~~---~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D 104 (284)
T PRK09195 64 AIVSAAAKQY---HHPLALHLDHHEKFDDIAQKVRSGVRSVMID 104 (284)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC
Confidence 2344455554 6999999999999999999999999988875
No 285
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.77 E-value=2.4 Score=36.74 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred HHHHhhhhCCcEEEEecCc-CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC----C-------CCHHHHHHHHh
Q 029526 70 AEEFIDETDIDALAVCIGN-VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS----G-------LSAELIKGCIE 137 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt-~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS----G-------~~~e~~~~~i~ 137 (192)
..+.+.++|||.+-+..|. .++.+.. ...-+++++++|++... +.+|..+.-. | +..++++++++
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~--~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~ 102 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMP--NTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCC--CCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence 4456888999999888655 3333332 13346999999998764 5788877542 1 25678999999
Q ss_pred cCCeEeecchHH
Q 029526 138 RGVRKFNVNTEV 149 (192)
Q Consensus 138 ~Gi~KINi~T~l 149 (192)
+|+.-|.+...+
T Consensus 103 ~g~~~iri~~~~ 114 (275)
T cd07937 103 NGIDIFRIFDAL 114 (275)
T ss_pred cCCCEEEEeecC
Confidence 999999998654
No 286
>PLN02433 uroporphyrinogen decarboxylase
Probab=83.74 E-value=6.2 Score=35.18 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=68.5
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccC--CccEEee
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKK--GVLLVLH 122 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~--~iPLVlH 122 (192)
..+++||.+.+.++ +.|+|.+.+.=-++ |..++ ...+ ..-+++|-+.++.. ++|.++|
T Consensus 162 ~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~-~~lsp--~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh 238 (345)
T PLN02433 162 MAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWA-GHLSP--VDFEEFSKPYLEKIVDEVKARHPDVPLILY 238 (345)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcc-ccCCH--HHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 46889998887765 36888776652111 12221 1111 11223343333321 4799998
Q ss_pred -cCCCCCHHHHHHHHhcCCeEeecc--hHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029526 123 -GASGLSAELIKGCIERGVRKFNVN--TEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 123 -GgSG~~~e~~~~~i~~Gi~KINi~--T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
+|.+ ..+....++|+.=+|++ +++..+.. .+.+ .+.+|. ++.-..+.+++.+++.|+.++.
T Consensus 239 ~cG~~---~~~~~~~~~~~~~i~~d~~~dl~e~~~-~~g~~~~l~GNi~p~-ll~gt~e~i~~~v~~~i~~~~~ 307 (345)
T PLN02433 239 ANGSG---GLLERLAGTGVDVIGLDWTVDMADARR-RLGSDVAVQGNVDPA-VLFGSKEAIEKEVRDVVKKAGP 307 (345)
T ss_pred eCCCH---HHHHHHHhcCCCEEEcCCCCCHHHHHH-HhCCCeEEEeCCCch-hhCCCHHHHHHHHHHHHHHcCC
Confidence 4443 56888888999888854 45544322 1221 244664 4455668899999999887653
No 287
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=83.61 E-value=21 Score=28.62 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=59.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++++.|.+.|+..++..+-..+.+....+.+.++.. |+.+=.=.+.. +.... . .-..+++..+++++. .+
T Consensus 43 ~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~-~~~~~~~~~~~i~~~-~~ 113 (275)
T cd01292 43 ALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIP----GVPAA---V-DEDAEALLLELLRRG-LE 113 (275)
T ss_pred HHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCC----CCccc---c-chhHHHHHHHHHHHH-Hh
Confidence 578889998887666655444444555666777765 43332111111 10000 0 012234445555443 11
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS 128 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~ 128 (192)
..+++++ .|+.+.. ..++.+.++++-+..++.++|+.+|-+.+..
T Consensus 114 ~~~~gi~-~~~~~~~--~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 114 LGAVGLK-LAGPYTA--TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred cCCeeEe-eCCCCCC--CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 2333442 4444332 1245666776666665568999999877764
No 288
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=83.15 E-value=15 Score=32.55 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=36.2
Q ss_pred CHHHHHHHHhhhccCCccE--EeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 101 KLDLLKDLHALSSKKGVLL--VLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 101 d~~~L~~I~~~~~~~~iPL--VlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
+.+-++++.+.+ ++|| .+--+...|.-.++++-++|++-|-+++.+..+...+++
T Consensus 190 ~~~~i~~~~~~~---~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~ 246 (292)
T PRK11320 190 ELEMYRRFADAV---KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAE 246 (292)
T ss_pred CHHHHHHHHHhc---CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHH
Confidence 455566666655 6888 344222233334666667799999999999888877764
No 289
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=83.14 E-value=14 Score=32.52 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---hC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---TD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---Tg 78 (192)
+++..|+|+|+ |....+.+ ...+.+...|+.+-.-.+.++..... .+.....++++.+++++ .|
T Consensus 109 ~~l~~GvTtv~-d~~~~~~~-------~~~~~~~~~g~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 175 (411)
T cd01298 109 EMIRSGTTTFA-DMYFFYPD-------AVAEAAEELGIRAVLGRGIMDLGTED-----VEETEEALAEAERLIREWHGAA 175 (411)
T ss_pred HHHhcCccEEE-CccccchH-------HHHHHHHHhCCeEEEEcceecCCCcc-----cccHHHHHHHHHHHHHHhcCCC
Confidence 35688999987 54433321 23333444455443332333211100 01123445677777754 34
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
+|.+-+.++ .|+. ...+.+.|+++-+...+.+.|+.+|-
T Consensus 176 ~~~~k~~~~-~~~~-----~~~~~~~l~~~~~~A~~~g~~v~~H~ 214 (411)
T cd01298 176 DGRIRVALA-PHAP-----YTCSDELLREVAELAREYGVPLHIHL 214 (411)
T ss_pred CCceEEEEe-CCCC-----ccCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 777666654 3432 23456767777666555578888883
No 290
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=83.13 E-value=16 Score=33.85 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=82.6
Q ss_pred hhhcCCCEe--EeeCCCC--------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 3 AIVLGFDSL--MVDGSHL--------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSV--M~D~S~l--------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
++++|-..| -+.+|.+ +.+|++...+++++||+.+|+.+.. ..|| ..-|+|+.+.+
T Consensus 85 ~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed--------~~rt~~~~l~~ 150 (409)
T COG0119 85 LLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAED--------ATRTDPEFLAE 150 (409)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------Eeec--------cccCCHHHHHH
Confidence 556666553 3444533 5799999999999999999966664 1222 13588888777
Q ss_pred Hhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 73 FIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 73 Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
-++. -|++.+-+ +-.=|.- .|.-=.++++.+.+.++. .+||-+|+ -.|+--..--.|+..|+..|..
T Consensus 151 ~~~~~~~~ga~~i~l--~DTvG~~---~P~~~~~~i~~l~~~v~~-~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~ 222 (409)
T COG0119 151 VVKAAIEAGADRINL--PDTVGVA---TPNEVADIIEALKANVPN-KVILSVHCHNDLGMAVANSLAAVEAGADQVEG 222 (409)
T ss_pred HHHHHHHcCCcEEEE--CCCcCcc---CHHHHHHHHHHHHHhCCC-CCeEEEEecCCcchHHHHHHHHHHcCCcEEEE
Confidence 6654 35665544 4443432 365567888888887731 27777766 5677777788889999988864
No 291
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=83.10 E-value=15 Score=32.69 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCC--CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNL--KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~l--d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
-|++++|++. .+.|+|.|-+- |.-=|.-.+ ..+ -+.++.++.+.+ ++|++.=||-+.+. ++..+..+|..
T Consensus 143 v~s~~~A~~a-~~~G~D~iv~q-G~eAGGH~g--~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg~-~iaaal~lGA~ 214 (330)
T PF03060_consen 143 VTSVREARKA-AKAGADAIVAQ-GPEAGGHRG--FEVGSTFSLLPQVRDAV---DIPVIAAGGIADGR-GIAAALALGAD 214 (330)
T ss_dssp ESSHHHHHHH-HHTT-SEEEEE--TTSSEE-----SSG-HHHHHHHHHHH----SS-EEEESS--SHH-HHHHHHHCT-S
T ss_pred cCCHHHHHHh-hhcCCCEEEEe-ccccCCCCC--ccccceeeHHHHHhhhc---CCcEEEecCcCCHH-HHHHHHHcCCC
Confidence 5889999985 57799998865 554343322 233 378888898888 69999999887654 49999999999
Q ss_pred EeecchHH
Q 029526 142 KFNVNTEV 149 (192)
Q Consensus 142 KINi~T~l 149 (192)
=|-++|-+
T Consensus 215 gV~~GTrF 222 (330)
T PF03060_consen 215 GVQMGTRF 222 (330)
T ss_dssp EEEESHHH
T ss_pred EeecCCeE
Confidence 99999988
No 292
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=83.04 E-value=22 Score=31.74 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=50.0
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-C
Q 029526 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-V 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i 140 (192)
-++++|.+|+++ .+++++==. -+.-|++-+++|++.+ ++|+.+ |-|=....+++++++.| +
T Consensus 197 ~~~~~A~~~~~~l~~~~i~~iEeP-----------~~~~d~~~~~~l~~~~---~ipia~-~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 197 LTVPEAIERGQALDQEGLTWIEEP-----------TLQHDYEGHARIASAL---RTPVQM-GENWLGPEEMFKALSAGAC 261 (355)
T ss_pred cCHHHHHHHHHHHHcCCCCEEECC-----------CCCcCHHHHHHHHHhc---CCCEEE-cCCCcCHHHHHHHHHhCCC
Confidence 368899999765 466655411 2445889999999988 699998 44556778899998876 6
Q ss_pred eEeecchHH
Q 029526 141 RKFNVNTEV 149 (192)
Q Consensus 141 ~KINi~T~l 149 (192)
.-+|+.-..
T Consensus 262 d~i~~~~~~ 270 (355)
T cd03321 262 DLVMPDLMK 270 (355)
T ss_pred CeEecCHhh
Confidence 666765444
No 293
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=83.03 E-value=9.8 Score=34.37 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHhhhhCCcEEEEecCcCCCCCC----------------------------------CCCCCCCHHHHHHHHhhhcc
Q 029526 69 QAEEFIDETDIDALAVCIGNVHGKYP----------------------------------SSGPNLKLDLLKDLHALSSK 114 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~HG~y~----------------------------------~~~p~ld~~~L~~I~~~~~~ 114 (192)
+..+-+++.|+++|.+.+.+.+-.+. .-.|.+.++.|++|++.+
T Consensus 135 ~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-- 212 (344)
T cd02922 135 ELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-- 212 (344)
T ss_pred HHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc--
Confidence 34444567899999999988743220 001447889999999887
Q ss_pred CCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 115 KGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 115 ~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
++|+++-|- + ..++.+++.+.|+.=|-+.
T Consensus 213 -~~PvivKgv-~-~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 213 -KLPIVLKGV-Q-TVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred -CCcEEEEcC-C-CHHHHHHHHHcCCCEEEEE
Confidence 699999976 3 5788999999999877764
No 294
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=83.00 E-value=5.6 Score=32.55 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=48.5
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHHH
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEVR 150 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l~ 150 (192)
.++|++-+--.+-. .+.+..+.+++++|+++. . .+|+++=| |+..+.+.++++.| ..=|.++|.+.
T Consensus 119 ~~aD~il~dt~~~~-~~Gg~g~~~~~~~l~~~~--~---~~PvilaG--GI~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 119 GEVDAILLDSKSGG-GGGGTGKTFDWSLLRGLA--S---RKPVILAG--GLTPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred ccCCEEEEcCCCCC-CCCCCcceEChHHhhccc--c---CCCEEEEC--CCChHHHHHHHHhcCCCEEEcCCccc
Confidence 56777755432221 111113678999999886 3 59999999 78999999999999 88999998875
No 295
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=83.00 E-value=7.6 Score=32.70 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCC--CC-C---------------------------------CCCCCCCHHHHH
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHG--KY-P---------------------------------SSGPNLKLDLLK 106 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG--~y-~---------------------------------~~~p~ld~~~L~ 106 (192)
.+++|+..++..++-|-+.+.+|+=--+| .+ . +....+|+++++
T Consensus 105 ~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~ 184 (229)
T PF00977_consen 105 ALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLK 184 (229)
T ss_dssp HHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHH
T ss_pred HhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHH
Confidence 45677777777776666666666655555 01 0 001236899999
Q ss_pred HHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 107 DLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 107 ~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
++++.+ ++|+..=||-+..+ +++++.+.|+.=+=++|.|
T Consensus 185 ~l~~~~---~~~viasGGv~~~~-Dl~~l~~~G~~gvivg~al 223 (229)
T PF00977_consen 185 QLAEAV---NIPVIASGGVRSLE-DLRELKKAGIDGVIVGSAL 223 (229)
T ss_dssp HHHHHH---SSEEEEESS--SHH-HHHHHHHTTECEEEESHHH
T ss_pred HHHHHc---CCCEEEecCCCCHH-HHHHHHHCCCcEEEEehHh
Confidence 999888 69999999877654 5888889999888888877
No 296
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.99 E-value=15 Score=32.21 Aligned_cols=103 Identities=19% Similarity=0.359 Sum_probs=70.7
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
+++|||.-.|+-+-..+... ++.+++. +..||.|. .+.+|+++.+ +.|+|.+-.
T Consensus 160 ~d~ilikdnHi~~~g~v~~a---v~~~r~~~~~~~I~VEv-------------------~tleea~eA~-~~gaD~I~L- 215 (277)
T PRK05742 160 YDAFLIKENHIAACGGIAQA---VAAAHRIAPGKPVEVEV-------------------ESLDELRQAL-AAGADIVML- 215 (277)
T ss_pred cccEEecHHHHHHhCCHHHH---HHHHHHhCCCCeEEEEe-------------------CCHHHHHHHH-HcCCCEEEE-
Confidence 68999988887766555333 3344433 34455552 2357887766 668999843
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
+ ++.++.++++.+..+ ..+|++-=| |+..+.+....+.|+.=|=+++..
T Consensus 216 -D-----------~~~~e~l~~~v~~~~-~~i~leAsG--GIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 216 -D-----------ELSLDDMREAVRLTA-GRAKLEASG--GINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred -C-----------CCCHHHHHHHHHHhC-CCCcEEEEC--CCCHHHHHHHHHcCCCEEEEChhh
Confidence 2 234566777766552 258999999 889999999999999988877644
No 297
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=82.90 E-value=24 Score=30.15 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=64.8
Q ss_pred hhcCCCEe-EeeCCCCCHHHH-HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 4 IVLGFDSL-MVDGSHLPFKDN-ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 4 i~~GFtSV-M~D~S~l~~eeN-i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.|++.+ ++++..-|..++ +...+++.+..+..|+.+-.-+ .+.++|.+ +.+++.|+|.
T Consensus 75 ~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~-----------------g~~~~e~l-~~Lk~aG~~~ 136 (296)
T TIGR00433 75 KAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATL-----------------GLLDPEQA-KRLKDAGLDY 136 (296)
T ss_pred HHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecC-----------------CCCCHHHH-HHHHHcCCCE
Confidence 45799886 446555454444 7777888888888777653211 12345554 5577899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHH-HHHHHhhhccCCccEEeecCC--CCCHHHHHHHH----hcCCe
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDL-LKDLHALSSKKGVLLVLHGAS--GLSAELIKGCI----ERGVR 141 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~-L~~I~~~~~~~~iPLVlHGgS--G~~~e~~~~~i----~~Gi~ 141 (192)
+.+++=+.--.|+.-.+.-+++. ++.|+.. .+.++++..|.=- |-+.+++.+.+ +.|+.
T Consensus 137 v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l-~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 137 YNHNLDTSQEFYSNIISTHTYDDRVDTLENA-KKAGLKVCSGGIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred EEEcccCCHHHHhhccCCCCHHHHHHHHHHH-HHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 98876522122321112234433 3333332 2236887655333 34445555543 45654
No 298
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.86 E-value=8.6 Score=36.36 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=76.2
Q ss_pred hhhhcCCCEeE-eeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLM-VDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM-~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+|.+.|.+.+= || +|..-+|++ +.++.++..|..+++-+++.+.... .-..| .+.|++ +.+.|+|
T Consensus 113 ~a~~~Gidi~Rifd--~lnd~~n~~---~ai~~ak~~G~~~~~~i~yt~sp~~------t~~y~--~~~a~~-l~~~Gad 178 (468)
T PRK12581 113 LSAQNGIDVFRIFD--ALNDPRNIQ---QALRAVKKTGKEAQLCIAYTTSPVH------TLNYY--LSLVKE-LVEMGAD 178 (468)
T ss_pred HHHHCCCCEEEEcc--cCCCHHHHH---HHHHHHHHcCCEEEEEEEEEeCCcC------cHHHH--HHHHHH-HHHcCCC
Confidence 46677776653 44 455555554 5567889999988866665532110 00011 123444 4467999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec--CCCCCHHHHHHHHhcCCeEeec
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG--ASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KINi 145 (192)
.|.++ -.=|.. .|.-=.++++.|++.. ++|+-+|+ .+|+.-...-+|++.|+.-|..
T Consensus 179 ~I~Ik--DtaG~l---~P~~v~~Lv~alk~~~---~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ 237 (468)
T PRK12581 179 SICIK--DMAGIL---TPKAAKELVSGIKAMT---NLPLIVHTHATSGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred EEEEC--CCCCCc---CHHHHHHHHHHHHhcc---CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEe
Confidence 87764 333333 2544566777787654 57777665 6788999999999999987744
No 299
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.67 E-value=2.2 Score=37.68 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.++++.+.|++.+..|=| . ...+.|.++.-+ ++.+...+ +.+...|-.|.+ ..+=.
T Consensus 5 ~~~~~l~~A~~~~yaV~A----f--------------N~~n~e~~~avi~AAee~~sPvI-iq~~~~~~~~~g--~~~~~ 63 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPA----F--------------NIHNLETLQVVVETAAELRSPVI-LAGTPGTFSYAG--TDYIV 63 (284)
T ss_pred cHHHHHHHHHHcCceEEE----E--------------EeCCHHHHHHHHHHHHHhCCCEE-EEcCccHHhhCC--HHHHH
Confidence 357788888877665422 1 123444444443 44555332 234444434543 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+.. +||.+||--.|-+.|.+++|++.|..-|-|+
T Consensus 64 ~~~~~~a~~~---~VPValHLDH~~~~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 64 AIAEVAARKY---NIPLALHLDHHEDLDDIKKKVRAGIRSVMID 104 (284)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEEec
Confidence 2234444444 6999999999999999999999999988885
No 300
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.61 E-value=6.6 Score=31.46 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred ccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 62 ~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
..+++|+|+.+-.-++.+|.+.+|. +.+.--.+=.++.+.++++=. -+|+ |+=|| =+|++++++.-++|+.
T Consensus 47 g~~~tp~e~v~aA~~~dv~vIgvSs------l~g~h~~l~~~lve~lre~G~-~~i~-v~~GG-vip~~d~~~l~~~G~~ 117 (143)
T COG2185 47 GLFQTPEEAVRAAVEEDVDVIGVSS------LDGGHLTLVPGLVEALREAGV-EDIL-VVVGG-VIPPGDYQELKEMGVD 117 (143)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEEEe------ccchHHHHHHHHHHHHHHhCC-cceE-EeecC-ccCchhHHHHHHhCcc
Confidence 3689999999988899999999995 222111122233344444311 1455 34344 6888889999999987
Q ss_pred Ee-ecchHHHHHH
Q 029526 142 KF-NVNTEVRKAY 153 (192)
Q Consensus 142 KI-Ni~T~l~~a~ 153 (192)
.| +-+|.+..+.
T Consensus 118 ~if~pgt~~~~~~ 130 (143)
T COG2185 118 RIFGPGTPIEEAL 130 (143)
T ss_pred eeeCCCCCHHHHH
Confidence 65 5566665444
No 301
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=82.60 E-value=3.5 Score=36.26 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=39.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+.||+| .++.++ .++.+++.+. -++.||+- || -+|+.+.+|. +|||
T Consensus 203 ea~~~GaDiI~lD--n~~~e~----l~~~v~~l~~~~~~~~leas----GG--------------I~~~ni~~ya-~~Gv 257 (277)
T TIGR01334 203 TVLQASPDILQLD--KFTPQQ----LHHLHERLKFFDHIPTLAAA----GG--------------INPENIADYI-EAGI 257 (277)
T ss_pred HHHHcCcCEEEEC--CCCHHH----HHHHHHHHhccCCCEEEEEE----CC--------------CCHHHHHHHH-hcCC
Confidence 6899999999999 466554 4455555542 34555543 11 3567777765 8999
Q ss_pred cEEEEe
Q 029526 80 DALAVC 85 (192)
Q Consensus 80 D~LAva 85 (192)
|.+.++
T Consensus 258 D~is~g 263 (277)
T TIGR01334 258 DLFITS 263 (277)
T ss_pred CEEEeC
Confidence 988543
No 302
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=82.51 E-value=14 Score=32.04 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=76.0
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|-++|+.-|-|=++.-+=.=-....+++++.|...+|+.--= =+...||.+|.+.+-+-||.=+
T Consensus 82 ~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrA----------------FD~~~d~~~ale~li~~Gv~RI 145 (241)
T COG3142 82 ARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRA----------------FDECPDPLEALEQLIELGVERI 145 (241)
T ss_pred HHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehh----------------hhhcCCHHHHHHHHHHCCCcEE
Confidence 344555555555554443333444555555555444332111 0245789999999999998765
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHH-HhcCCeEeecchHH
Q 029526 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGC-IERGVRKFNVNTEV 149 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~-i~~Gi~KINi~T~l 149 (192)
=- ||.-. .+-..+++|+++-+..+ =-+.+=.|+|+..+.++.. ...|+.-++...-.
T Consensus 146 LT-----sGg~~--sa~eg~~~l~~li~~a~---gri~Im~GaGV~~~N~~~l~~~tg~~e~H~s~~~ 203 (241)
T COG3142 146 LT-----SGGKA--SALEGLDLLKRLIEQAK---GRIIIMAGAGVRAENIAELVLLTGVTEVHGSAGV 203 (241)
T ss_pred ec-----CCCcC--chhhhHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHhcCchhhhhcccc
Confidence 42 44433 26677888888776663 3455667789999999998 78888888765544
No 303
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=82.29 E-value=3.1 Score=38.22 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
|.++++-|+.|++.+ +.|+|++|- ++.++.+++++.|+.=|-+
T Consensus 230 ~~ltW~di~~lr~~~---~~pvivKgV--~s~~dA~~a~~~Gvd~I~V 272 (381)
T PRK11197 230 PSISWKDLEWIRDFW---DGPMVIKGI--LDPEDARDAVRFGADGIVV 272 (381)
T ss_pred CCCCHHHHHHHHHhC---CCCEEEEec--CCHHHHHHHHhCCCCEEEE
Confidence 778999999999988 699999998 8999999999999998855
No 304
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=82.18 E-value=33 Score=30.69 Aligned_cols=113 Identities=8% Similarity=-0.000 Sum_probs=66.4
Q ss_pred hhhhcCCCEeEeeCCCC-CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh---h
Q 029526 2 EAIVLGFDSLMVDGSHL-PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE---T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l-~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~---T 77 (192)
++++.||+.+-+-...- .+++-++..+.+-+.+-. ++.+=.. . ...| ++++|.+|+++ .
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~-~~~l~vD---------a------n~~~-~~~~A~~~~~~l~~~ 215 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGP-DMRLMHD---------G------AHWY-SRADALRLGRALEEL 215 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCC-CCeEEEE---------C------CCCc-CHHHHHHHHHHhhhc
Confidence 45678999887753321 145555555555443321 2222111 0 0124 58999999755 3
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcC-CeEeecc
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERG-VRKFNVN 146 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~G-i~KINi~ 146 (192)
++.++= .+ -|.-|++-+.+|++.+ ++|+.+ |-|-.. .++++++++.| +.-||+.
T Consensus 216 ~l~~iE----------eP-~~~~d~~~~~~l~~~~---~ipIa~-~E~~~~~~~~~~~~i~~~a~d~v~~d 271 (368)
T cd03329 216 GFFWYE----------DP-LREASISSYRWLAEKL---DIPILG-TEHSRGALESRADWVLAGATDFLRAD 271 (368)
T ss_pred CCCeEe----------CC-CCchhHHHHHHHHhcC---CCCEEc-cCcccCcHHHHHHHHHhCCCCEEecC
Confidence 444332 11 2334778888898887 699764 667666 88999999888 4455554
No 305
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=82.10 E-value=5.8 Score=35.12 Aligned_cols=71 Identities=28% Similarity=0.388 Sum_probs=46.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+|+++|.+.||+|= ++.| .+++.+++.+.. .+-+|+- |. -+++-+.+|. +||||
T Consensus 203 eAl~agaDiImLDN--m~~e----~~~~av~~l~~~~~~~lEaS-Gg-----------------It~~ni~~yA-~tGVD 257 (280)
T COG0157 203 EALEAGADIIMLDN--MSPE----ELKEAVKLLGLAGRALLEAS-GG-----------------ITLENIREYA-ETGVD 257 (280)
T ss_pred HHHHcCCCEEEecC--CCHH----HHHHHHHHhccCCceEEEEe-CC-----------------CCHHHHHHHh-hcCCC
Confidence 79999999999994 4444 467777774333 3666664 21 2345666655 89999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
.+.++- . |.+ .|.||+.
T Consensus 258 ~IS~ga--l---ths-~~~lDis 274 (280)
T COG0157 258 VISVGA--L---THS-APALDIS 274 (280)
T ss_pred EEEeCc--c---ccC-CcccceE
Confidence 887653 2 333 4777775
No 306
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=82.02 E-value=3.1 Score=36.70 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=30.0
Q ss_pred CccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 116 ~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
+||.+||--.|-+.|.+++|++.|.+-|-++.
T Consensus 72 ~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 69999999999999999999999999998864
No 307
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=81.94 E-value=23 Score=30.82 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=67.6
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHh-C--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHS-K--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
++++|+---|+.+--++.. .++.+++ . +..++.|. .+.+|+++.. +.|+|.+.+
T Consensus 148 ~d~ilikdnHi~~~G~~~~---av~~~r~~~~~~~~Igvev-------------------~t~eea~~A~-~~gaDyI~l 204 (265)
T TIGR00078 148 SDAVMIKDNHIAAAGSIEK---AVKRARAAAPFALKIEVEV-------------------ESLEEAEEAA-EAGADIIML 204 (265)
T ss_pred ccceeeeccHHHHhCCHHH---HHHHHHHhCCCCCeEEEEe-------------------CCHHHHHHHH-HcCCCEEEE
Confidence 5688888888776554333 2333333 2 34454442 2457888864 789998775
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
|| +.++.++++.+..+. .+|++-=| |+..++++...+.|+.=|=++.
T Consensus 205 --d~-----------~~~e~lk~~v~~~~~-~ipi~AsG--GI~~~ni~~~a~~Gvd~Isvga 251 (265)
T TIGR00078 205 --DN-----------MKPEEIKEAVQLLKG-RVLLEASG--GITLDNLEEYAETGVDVISSGA 251 (265)
T ss_pred --CC-----------CCHHHHHHHHHHhcC-CCcEEEEC--CCCHHHHHHHHHcCCCEEEeCH
Confidence 33 233667777665522 38999988 7889999999999999888843
No 308
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=81.91 E-value=22 Score=30.81 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred hhhh-cCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHH---HH
Q 029526 2 EAIV-LGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA---EE 72 (192)
Q Consensus 2 ~ai~-~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea---~~ 72 (192)
..++ .|.++|++=|| .|+.+|=.+..+.+++.+.. .+.|=+=+|. ++.+++ .+
T Consensus 32 ~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-~~~viagvg~-----------------~~t~~ai~~a~ 93 (293)
T PRK04147 32 FNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-KVKLIAQVGS-----------------VNTAEAQELAK 93 (293)
T ss_pred HHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-CCCEEecCCC-----------------CCHHHHHHHHH
Confidence 3577 89999999886 46789999999988888753 2444332111 222333 34
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029526 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
++++.|+|++.+.--- |-...++==++-+++|.+.+ ++|+++. .|..++.|.+.+..+.
T Consensus 94 ~a~~~Gad~v~v~~P~----y~~~~~~~l~~~f~~va~a~---~lPv~iYn~P~~tg~~l~~~~l~~L~~~ 157 (293)
T PRK04147 94 YATELGYDAISAVTPF----YYPFSFEEICDYYREIIDSA---DNPMIVYNIPALTGVNLSLDQFNELFTL 157 (293)
T ss_pred HHHHcCCCEEEEeCCc----CCCCCHHHHHHHHHHHHHhC---CCCEEEEeCchhhccCCCHHHHHHHhcC
Confidence 5678999999987422 32111111133345555555 6999998 6788999999988753
No 309
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=81.83 E-value=3.1 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred HHHHhhhcc--CCccEE--eecCCCCCHHHHHHHHh
Q 029526 106 KDLHALSSK--KGVLLV--LHGASGLSAELIKGCIE 137 (192)
Q Consensus 106 ~~I~~~~~~--~~iPLV--lHGgSG~~~e~~~~~i~ 137 (192)
+.|+..... ..-||| +||.||+....+.+.|.
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA 74 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIA 74 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHH
Confidence 445544322 357888 89999999999888864
No 310
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=81.68 E-value=35 Score=29.76 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEE------eecC--CCCCHHHHHHHHhc
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV------LHGA--SGLSAELIKGCIER 138 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV------lHGg--SG~~~e~~~~~i~~ 138 (192)
+.+...-+++.|++. -.||.|-.. +.+.++.+++. +++++ ++-+ +|....-+++..+.
T Consensus 198 ~~~~~~~~~~~g~~r------i~Hg~~l~~----~~~~i~~l~~~----gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~ 263 (324)
T TIGR01430 198 PESVREALDDLGATR------IGHGVRALE----DPELLKRLAQE----NITLEVCPTSNVALGVVKSLAEHPLRRFLEA 263 (324)
T ss_pred hHHHHHHHHHcCchh------cchhhhhcc----CHHHHHHHHHc----CceEEECCcccccccccCCcccChHHHHHHC
Confidence 334444444556542 268777531 23455666543 45553 2222 34334458888999
Q ss_pred CCeEeecchH
Q 029526 139 GVRKFNVNTE 148 (192)
Q Consensus 139 Gi~KINi~T~ 148 (192)
|| +|=++||
T Consensus 264 Gv-~v~igTD 272 (324)
T TIGR01430 264 GV-KVTLNSD 272 (324)
T ss_pred CC-EEEECCC
Confidence 97 5667776
No 311
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.62 E-value=5 Score=35.49 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=45.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS--KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~--~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+-||+| .++. ...++++++.+. -.+.+|+= || -+++.+.+|. +|||
T Consensus 211 eA~~~GaD~I~LD--n~~~----e~l~~av~~~~~~~~~i~leAs----GG--------------It~~ni~~ya-~tGv 265 (288)
T PRK07428 211 EALEYGADIIMLD--NMPV----DLMQQAVQLIRQQNPRVKIEAS----GN--------------ITLETIRAVA-ETGV 265 (288)
T ss_pred HHHHcCCCEEEEC--CCCH----HHHHHHHHHHHhcCCCeEEEEE----CC--------------CCHHHHHHHH-HcCC
Confidence 6899999999999 4444 345566666553 34555553 22 2356777765 9999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.++++- .|.. .|.+||.
T Consensus 266 D~Isvgs-----l~~s-a~~~Dis 283 (288)
T PRK07428 266 DYISSSA-----PITR-SPWLDLS 283 (288)
T ss_pred CEEEEch-----hhhC-CCccceE
Confidence 9998874 2333 3556654
No 312
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=81.60 E-value=20 Score=32.05 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=56.6
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh--hCCc
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE--TDID 80 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~--TgvD 80 (192)
++..|||+|.-=++.. ..|++.-.+.+..+.+.|+..=--.+..+....+... .......+++++++++++ .+++
T Consensus 80 ~l~~G~Ttv~d~g~~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T PRK12394 80 MPPNGVTTVVDAGSAG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQE-NYDPDNIDENKIHALFRQYRNVLQ 156 (379)
T ss_pred HHhCCccEEEECCCCC--cccHHHHHHHHhhhhcceeeeEEeeecccccccCccc-ccChhHCCHHHHHHHHHHCcCcEE
Confidence 5788999986433322 2445444443333343333222222233221111000 001122457899999876 4566
Q ss_pred EEEEec-CcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 81 ALAVCI-GNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 81 ~LAvai-Gt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
.+-+.+ .+.|+.|. .+.|++..+..++.++|+.+|-+.
T Consensus 157 g~ki~~~~~~~~~~~-------~~~l~~~~~~A~~~g~~v~iH~~e 195 (379)
T PRK12394 157 GLKLRVQTEDIAEYG-------LKPLTETLRIANDLRCPVAVHSTH 195 (379)
T ss_pred EEEEEEecccccccc-------hHHHHHHHHHHHHcCCCEEEEeCC
Confidence 554443 34565443 334555555544558999999764
No 313
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=81.55 E-value=28 Score=30.08 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH-HHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029526 17 HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN-QAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 17 ~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe-ea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
.|++..|...-+++++..+..|+.|- .|-||+ +..+...++|.|++-.=-|..=-.|..
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~gI~VS--------------------LFiDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~ 161 (234)
T cd00003 102 GLDVAGQAEKLKPIIERLKDAGIRVS--------------------LFIDPDPEQIEAAKEVGADRVELHTGPYANAYDK 161 (234)
T ss_pred cchhhcCHHHHHHHHHHHHHCCCEEE--------------------EEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc
Confidence 35566777777888888887776542 333332 344558899999988765543222221
Q ss_pred CCCCC--CHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCeEeecchHH
Q 029526 96 SGPNL--KLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVRKFNVNTEV 149 (192)
Q Consensus 96 ~~p~l--d~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~KINi~T~l 149 (192)
... -|++|.+-.+... ...|..|-|.|+.-+.+....+ -+|.-+||+-.+
T Consensus 162 --~~~~~el~~i~~aa~~a~--~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsi 214 (234)
T cd00003 162 --AEREAELERIAKAAKLAR--ELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAI 214 (234)
T ss_pred --hhHHHHHHHHHHHHHHHH--HcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHH
Confidence 222 2333433333332 5789999999999999988754 469999999776
No 314
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=81.49 E-value=3.4 Score=36.52 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+|++.+.|++.|..| |.+ ...+.|.++-- .++.+...+ +.+...|-.|.+ ...=..
T Consensus 6 ~k~iL~~A~~~~yAV----~Af--------------N~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~--~~~~~~ 64 (286)
T PRK12738 6 TKYLLQDAQANGYAV----PAF--------------NIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIA--LEEIYA 64 (286)
T ss_pred HHHHHHHHHHCCceE----EEE--------------EeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCC--HHHHHH
Confidence 577888888877665 222 12333444433 344554332 233333323322 111122
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
.++.+.+.. +||.+||=-.|-+.|.+++|++.|..-|-++-
T Consensus 65 ~~~~~a~~~---~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 105 (286)
T PRK12738 65 LCSAYSTTY---NMPLALHLDHHESLDDIRRKVHAGVRSAMIDG 105 (286)
T ss_pred HHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEeecC
Confidence 334444444 69999999999999999999999999998864
No 315
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=81.41 E-value=29 Score=30.38 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHH---HHHHHHHHHHHHHh--CCCeEEEe--cc--ccccCCCCCccccccccCCCHHH-HH
Q 029526 2 EAIVLGFDSLMVDGSHLPFKD---NISHTKYISFLAHS--KGMLVEAE--LG--RLSGTEDGLTVEDYEAKLTDVNQ-AE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~ee---Ni~~Tk~vv~~Ah~--~gv~VEaE--lG--~i~g~e~~~~~~~~~~~~T~pee-a~ 71 (192)
+.+++|.+-|.+= +..+++ |-...+++++.--+ .=+++-+- -| .|.- .. +. +..-.+|.+ +.
T Consensus 99 ~~l~~Ga~rViig--T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~-~G----W~-~~t~~~~~e~~~ 170 (262)
T PLN02446 99 SYLDAGASHVIVT--SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVT-DR----WQ-KFSDLAVDEETL 170 (262)
T ss_pred HHHHcCCCEEEEc--hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEE-CC----Cc-ccCCCCHHHHHH
Confidence 5788999999993 333332 35555555544311 11333433 23 3311 00 11 112357777 46
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC--CeEeecchHH
Q 029526 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG--VRKFNVNTEV 149 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G--i~KINi~T~l 149 (192)
+|. +.|++-+=+.==..-|+. ..+|+++++++.+.+ ++|++-=||-+.. +++++..+.| +.-+=++..|
T Consensus 171 ~~~-~~g~~eii~TdI~rDGtl----~G~d~el~~~l~~~~---~ipVIASGGv~sl-eDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 171 EFL-AAYCDEFLVHGVDVEGKR----LGIDEELVALLGEHS---PIPVTYAGGVRSL-DDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHH-HhCCCEEEEEEEcCCCcc----cCCCHHHHHHHHhhC---CCCEEEECCCCCH-HHHHHHHHcCCCCEEEEEEeeH
Confidence 665 445766655432334443 335899999999988 6999999999955 4588888874 5556677766
No 316
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=81.40 E-value=2.5 Score=38.30 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
|.+.|+.|+.|++.. ++|+++-|- ++.++.+++++.|+.=|.|+
T Consensus 210 ~~~~w~~i~~~~~~~---~~pvivKgv--~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQW---KLPVIVKGV--LSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp TT-SHHHHHHHHHHC---SSEEEEEEE---SHHHHHHHHHTT-SEEEEE
T ss_pred CCCCHHHHHHHhccc---CCceEEEec--ccHHHHHHHHhcCCCEEEec
Confidence 679999999999988 699999998 99999999999999999997
No 317
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=81.27 E-value=14 Score=31.40 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEeecCC----CCCH----------
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLHGAS----GLSA---------- 129 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlHGgS----G~~~---------- 129 (192)
-+.+++.+++++.|.|.+-+.++..|+... +.++-+.++++++..++. ++++.+|+.. ..|+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~ 86 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS---RPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIER 86 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC---CCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHH
Confidence 567889999999999999999988875432 334567778888877665 6788889753 2232
Q ss_pred --HHHHHHHhcCCeEeecc
Q 029526 130 --ELIKGCIERGVRKFNVN 146 (192)
Q Consensus 130 --e~~~~~i~~Gi~KINi~ 146 (192)
..++.|-++|+..+++.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 87 LKDEIERCEELGIRLLVFH 105 (279)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 12333557888887773
No 318
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=81.27 E-value=31 Score=28.82 Aligned_cols=141 Identities=14% Similarity=0.036 Sum_probs=94.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--------ecc----ccccCCCCCcccc---------c
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--------ELG----RLSGTEDGLTVED---------Y 60 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--------ElG----~i~g~e~~~~~~~---------~ 60 (192)
++++.|-+.|=+=--.++.++-.+..+++.++|+.+|+.+=- ++| |+|. +|...... .
T Consensus 27 ~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~adGVHlg~-~d~~~~~~r~~~~~~~~i 105 (211)
T PRK03512 27 RLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAYGVHLGQ-EDLETADLNAIRAAGLRL 105 (211)
T ss_pred HHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCCEEEcCh-HhCCHHHHHHhcCCCCEE
Confidence 578899999999988899999999999999999988765432 222 2332 22100000 0
Q ss_pred cccCCCHHHHHHHhhhhCCcEEEEecCcCCCCC-CC-CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029526 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY-PS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 61 ~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
...--+.+|+.+ ..+.|+|.+.++ .+.--- ++ ..+.+-++.|+++.+... ++|++-=| |+..+++.++.+.
T Consensus 106 G~S~H~~~e~~~-A~~~gaDYi~lg--pvf~T~tK~~~~~~~G~~~l~~~~~~~~--~~PV~AiG--GI~~~ni~~l~~~ 178 (211)
T PRK03512 106 GVSTHDDMEIDV-ALAARPSYIALG--HVFPTQTKQMPSAPQGLAQLARHVERLA--DYPTVAIG--GISLERAPAVLAT 178 (211)
T ss_pred EEeCCCHHHHHH-HhhcCCCEEEEC--CccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEEC--CCCHHHHHHHHHc
Confidence 111236667655 346799998754 432111 11 124578888888876532 59999999 7889999999999
Q ss_pred CCeEeecchHHH
Q 029526 139 GVRKFNVNTEVR 150 (192)
Q Consensus 139 Gi~KINi~T~l~ 150 (192)
|+.=|=+-+.+.
T Consensus 179 Ga~GiAvisai~ 190 (211)
T PRK03512 179 GVGSIAVVSAIT 190 (211)
T ss_pred CCCEEEEhhHhh
Confidence 999888777664
No 319
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.90 E-value=3.8 Score=36.19 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=46.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|- ++. +..++.|++.+.. +.+|+- | --+++-+.+|. +||||.
T Consensus 208 ea~~~gaDiImLDn--~s~----e~l~~av~~~~~~-~~leaS----G--------------gI~~~ni~~yA-~tGVD~ 261 (281)
T PRK06543 208 PVLAAGVDTIMLDN--FSL----DDLREGVELVDGR-AIVEAS----G--------------NVNLNTVGAIA-STGVDV 261 (281)
T ss_pred HHHhcCCCEEEECC--CCH----HHHHHHHHHhCCC-eEEEEE----C--------------CCCHHHHHHHH-hcCCCE
Confidence 68899999999995 333 3456667766542 344443 1 13456777875 799998
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+.++- .|.+ .|.+||.
T Consensus 262 Is~ga-----lths-~~~~D~s 277 (281)
T PRK06543 262 ISVGA-----LTHS-VRALDLG 277 (281)
T ss_pred EEeCc-----cccC-Cccccee
Confidence 87653 3554 4778875
No 320
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=18 Score=32.78 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=64.2
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLK 106 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~ 106 (192)
-++.+++||++|+-+..=+-.+.- ++ .+-..++..+++.+.|+|++.++ |+-++.
T Consensus 51 l~e~i~~ah~~gkk~~V~~N~~~~-~~---------~~~~~~~~l~~l~e~GvDaviv~---------------Dpg~i~ 105 (347)
T COG0826 51 LAEAVELAHSAGKKVYVAVNTLLH-ND---------ELETLERYLDRLVELGVDAVIVA---------------DPGLIM 105 (347)
T ss_pred HHHHHHHHHHcCCeEEEEeccccc-cc---------hhhHHHHHHHHHHHcCCCEEEEc---------------CHHHHH
Confidence 789999999999988776655531 11 12235678888899999999987 455666
Q ss_pred HHHhhhccCCccEEe-ecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHH
Q 029526 107 DLHALSSKKGVLLVL-HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD 155 (192)
Q Consensus 107 ~I~~~~~~~~iPLVl-HGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~ 155 (192)
-+++... ++|+.+ +=.+-...+.++-.-+.|...+=..-++...-+.
T Consensus 106 l~~e~~p--~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~ 153 (347)
T COG0826 106 LARERGP--DLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIK 153 (347)
T ss_pred HHHHhCC--CCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHH
Confidence 6666542 345432 2223444555666666666555555555444433
No 321
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.51 E-value=3.9 Score=36.09 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 106 KDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 106 ~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
+...+.. +||.+||--.|.+.|.+++|++.|.+-|-|+..
T Consensus 67 ~~~A~~~---~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS 106 (284)
T PRK12857 67 RTAAEKA---SVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGS 106 (284)
T ss_pred HHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCC
Confidence 4444444 699999999999999999999999999988643
No 322
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.50 E-value=13 Score=33.11 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhCCcEEEEecCcC-CCCC
Q 029526 19 PFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETDIDALAVCIGNV-HGKY 93 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~TgvD~LAvaiGt~-HG~y 93 (192)
.+-.|-..+.++++-.++ .+++|-.=+- + |.++. .+.+++.+| ++..|+|+|.|.-+|. -..|
T Consensus 103 ~Ll~~p~~~~~iv~av~~~~~~PVsvKiR-~-g~~~~----------~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~ 170 (318)
T TIGR00742 103 CLMGNADLVADCVKAMQEAVNIPVTVKHR-I-GIDPL----------DSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGL 170 (318)
T ss_pred HhhcCHHHHHHHHHHHHHHhCCCeEEEEe-c-CCCCc----------chHHHHHHHHHHHHHcCCCEEEEeCCchhhcCC
Confidence 345666777777777765 3555444332 1 11110 122444444 5679999999988885 3346
Q ss_pred CCC----CCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 94 PSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 94 ~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+. .+..|++.+.++++.+. +||++.=|+--.++ ++.++.. |+.=|-|++.+.
T Consensus 171 sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~NGdI~s~~-da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 171 SPKENREIPPLRYERVYQLKKDFP--HLTIEINGGIKNSE-QIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred CccccccCCchhHHHHHHHHHhCC--CCcEEEECCcCCHH-HHHHHHh-CCCEEEECHHHH
Confidence 531 13468988888887662 59999999886655 5666765 888888887763
No 323
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=80.28 E-value=31 Score=31.54 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
..+|+++..-+ .||+|.+-++ -||.+--++..--++.|.+|++.+.. .+|+.+=||--.+-| +-||+.+|-.=+
T Consensus 226 V~~~~D~~~a~-~tg~~~I~vs---nhggrqlD~g~st~~~L~ei~~av~~-~~~vi~dGGiR~G~D-v~KAlALGA~~v 299 (360)
T COG1304 226 ILAPEDAAGAG-GTGADGIEVS---NHGGRQLDWGISTADSLPEIVEAVGD-RIEVIADGGIRSGLD-VAKALALGADAV 299 (360)
T ss_pred CCCHHHHHhhc-cCCceEEEEE---cCCCccccCCCChHHHHHHHHHHhCC-CeEEEecCCCCCHHH-HHHHHHhCCchh
Confidence 45778888755 7888888776 36554222333357889999999841 288888888665554 899999999988
Q ss_pred ecchHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 029526 144 NVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190 (192)
Q Consensus 144 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~g 190 (192)
=++-++.++....= ..=.....+.+++.++..|.+.|+..
T Consensus 300 ~igrp~L~~l~~~g-------~~GV~~~le~~~~El~~~M~L~G~~~ 339 (360)
T COG1304 300 GIGRPFLYGLAAGG-------EAGVERVLEIIRKELKIAMALTGAKN 339 (360)
T ss_pred hhhHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 87777766654421 11234556778888888888888753
No 324
>PRK08508 biotin synthase; Provisional
Probab=80.12 E-value=23 Score=30.72 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCC
Q 029526 65 TDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGV 140 (192)
Q Consensus 65 T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi 140 (192)
-+||++.+.+++ .|+.-+.+. .+-.+ |. +.+++.+.++-+.+++....+.+|...|. +.|++++..+.|+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv-~sg~~-~~----~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGl 113 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLV-TSGRG-LD----DKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGI 113 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE-eccCC-CC----cccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCC
Confidence 599999988765 688776652 11111 22 23677776665555421123567766665 6788899999999
Q ss_pred eEeecchHHHHHHH
Q 029526 141 RKFNVNTEVRKAYM 154 (192)
Q Consensus 141 ~KINi~T~l~~a~~ 154 (192)
..+|++=+....+.
T Consensus 114 d~~~~~lEt~~~~~ 127 (279)
T PRK08508 114 FSYNHNLETSKEFF 127 (279)
T ss_pred CEEcccccchHHHh
Confidence 99998755554443
No 325
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.98 E-value=13 Score=32.02 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=57.3
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhccCCccEEeecCCC-CCHHHHHHHHhcCCeEeecch
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSSKKGVLLVLHGASG-LSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG-~~~e~~~~~i~~Gi~KINi~T 147 (192)
..+.+.+.|||.+=+.+.+..+.+.. .....+++-+++|.+..+ .+.+|+.+--.+ ...+++..+..+|+.-|++.+
T Consensus 25 ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~ 103 (266)
T cd07944 25 IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF 103 (266)
T ss_pred HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec
Confidence 34457789999999998777654321 124467788888877642 257888877666 467889999999999999986
Q ss_pred HH
Q 029526 148 EV 149 (192)
Q Consensus 148 ~l 149 (192)
..
T Consensus 104 ~~ 105 (266)
T cd07944 104 HK 105 (266)
T ss_pred cc
Confidence 55
No 326
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=79.87 E-value=5.9 Score=34.46 Aligned_cols=70 Identities=30% Similarity=0.428 Sum_probs=44.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|-=.. + ..+++++.... .+.+|+ +|| -+++.+.+++ +||+|.
T Consensus 193 ~A~~~gaDyI~ld~~~~---e---~lk~~v~~~~~-~ipi~A----sGG--------------I~~~ni~~~a-~~Gvd~ 246 (265)
T TIGR00078 193 EAAEAGADIIMLDNMKP---E---EIKEAVQLLKG-RVLLEA----SGG--------------ITLDNLEEYA-ETGVDV 246 (265)
T ss_pred HHHHcCCCEEEECCCCH---H---HHHHHHHHhcC-CCcEEE----ECC--------------CCHHHHHHHH-HcCCCE
Confidence 68899999999987322 3 34555554432 267776 332 1346677755 899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+|+ |.. |.. .|.+||.
T Consensus 247 Isv--gai---t~s-a~~~D~s 262 (265)
T TIGR00078 247 ISS--GAL---THS-VPALDFS 262 (265)
T ss_pred EEe--CHH---HcC-CCcccee
Confidence 998 443 443 3667764
No 327
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=79.53 E-value=8.8 Score=33.42 Aligned_cols=70 Identities=26% Similarity=0.368 Sum_probs=46.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+-||+|-=. +...+++++.... .+.+|+= || -+++.+.++. +||+|.
T Consensus 197 ~A~~~gaDyI~ld~~~------~e~l~~~~~~~~~-~ipi~Ai----GG--------------I~~~ni~~~a-~~Gvd~ 250 (268)
T cd01572 197 EALEAGADIIMLDNMS------PEELREAVALLKG-RVLLEAS----GG--------------ITLENIRAYA-ETGVDY 250 (268)
T ss_pred HHHHcCCCEEEECCcC------HHHHHHHHHHcCC-CCcEEEE----CC--------------CCHHHHHHHH-HcCCCE
Confidence 6889999999999532 3445555555432 5676663 22 2356677765 899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+|++- .|.+ .|.+||.
T Consensus 251 Iav~s-----l~~~-a~~~D~s 266 (268)
T cd01572 251 ISVGA-----LTHS-APALDIS 266 (268)
T ss_pred EEEEe-----eecC-CCccCcc
Confidence 99863 4543 3667775
No 328
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=79.52 E-value=52 Score=30.42 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=69.6
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+.++|.+.+-+=++.- ...-+++++.++.+|+-+=.|+=. . -+|.+..+.+ .-++|.
T Consensus 245 ~~a~aGAD~vTVH~ea~-----~~ti~~ai~~akk~GikvgVD~ln---------------p-~tp~e~i~~l-~~~vD~ 302 (391)
T PRK13307 245 MAADATADAVVISGLAP-----ISTIEKAIHEAQKTGIYSILDMLN---------------V-EDPVKLLESL-KVKPDV 302 (391)
T ss_pred HHHhcCCCEEEEeccCC-----HHHHHHHHHHHHHcCCEEEEEEcC---------------C-CCHHHHHHHh-hCCCCE
Confidence 34566666665555431 122345667777777433222100 1 1343443333 558898
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-+.-|--=| .. .| -++.++++++.. .++++..=| |+..+.++.+++.|+.=+=+++.+.
T Consensus 303 Vllht~vdp~--~~-~~--~~~kI~~ikk~~--~~~~I~VdG--GI~~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 303 VELHRGIDEE--GT-EH--AWGNIKEIKKAG--GKILVAVAG--GVRVENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred EEEccccCCC--cc-cc--hHHHHHHHHHhC--CCCcEEEEC--CcCHHHHHHHHHcCCCEEEEeHHHh
Confidence 7554211111 11 13 356788888763 268999999 5668889999999999998898764
No 329
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=79.46 E-value=4.1 Score=35.99 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
.+++.+.|.+.+..|=| + ...+.+.++-.+ ++.+...+ +.+...|-.|.++ ...=..
T Consensus 6 ~k~lL~~A~~~~yAV~A----f--------------N~~n~e~~~avi~AAee~~sPvI-l~~~~~~~~~~~~-~~~~~~ 65 (286)
T PRK08610 6 MKEMLIDAKENGYAVGQ----Y--------------NLNNLEFTQAILEASQEENAPVI-LGVSEGAARYMSG-FYTVVK 65 (286)
T ss_pred HHHHHHHHHHCCceEEE----E--------------EECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCc-HHHHHH
Confidence 56777777776655422 1 124455555444 44554432 3444444455331 111123
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
.++.+.+..+ ..+|.+||=-.|-+.|.+++|++.|.+-|-++
T Consensus 66 ~~~~~A~~~~-~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D 107 (286)
T PRK08610 66 MVEGLMHDLN-ITIPVAIHLDHGSSFEKCKEAIDAGFTSVMID 107 (286)
T ss_pred HHHHHHHHcC-CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 3444444431 12899999999999999999999999998885
No 330
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=79.44 E-value=50 Score=30.19 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecC--cCCCCCC-----CCCCCCCHHHHHHHHhhhcc----CCccEEeecCCCCCHHHHH
Q 029526 65 TDVNQAEEFIDETDIDALAVCIG--NVHGKYP-----SSGPNLKLDLLKDLHALSSK----KGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiG--t~HG~y~-----~~~p~ld~~~L~~I~~~~~~----~~iPLVlHGgSG~~~e~~~ 133 (192)
.+++++.+-++.-|+|++-|+=+ ..|-... -+.| -+..|.++.+.+.. .++|++.=||-..+.+ +.
T Consensus 225 ~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~p--t~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~D-v~ 301 (392)
T cd02808 225 HGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLP--TELGLARAHQALVKNGLRDRVSLIASGGLRTGAD-VA 301 (392)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCcc--HHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHH-HH
Confidence 36778888887778999998742 2332110 0012 12456666665421 1599999888776655 88
Q ss_pred HHHhcCCeEeecchHHHHHHHHHh--c-----CCC----CC-----------hHHHHHHHHHHHHHHHHHHHHHhCCC
Q 029526 134 GCIERGVRKFNVNTEVRKAYMDSL--S-----RPK----SD-----------LIHLMASAKEAMKAVVAEKMRLFGSS 189 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~l~~a~~~~~--~-----~~~----~~-----------~~~~~~~~~~~~~~~v~~~i~~~gs~ 189 (192)
+++.+|-.=|+++|.+..+..-.. + .|- .+ -..-+....+.+++.++..|..+|..
T Consensus 302 kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~ 379 (392)
T cd02808 302 KALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKR 379 (392)
T ss_pred HHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998762221 1 010 01 11222334467777777888887754
No 331
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.42 E-value=4.3 Score=35.71 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=29.8
Q ss_pred CccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 116 ~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
+||.+||--.|-+.+.+.+|++.|..-|-|+.
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~ 100 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDG 100 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCC
Confidence 69999999999999999999999999888864
No 332
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=79.26 E-value=9.6 Score=33.44 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=64.6
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC-CC---HHHHHHHHhhhccCCccEEeec
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN-LK---LDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~-ld---~~~L~~I~~~~~~~~iPLVlHG 123 (192)
.++++|+.+.++++ +.|+|.+-++ ...+...-=.|+ .+ ..-+++|-+.++. .|.++|-
T Consensus 154 ~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~--d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--~~~ilh~ 229 (326)
T cd03307 154 WLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIA--DPTASPELISPEFYEEFALPYHKKIVKELHG--CPTILHI 229 (326)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEec--CCCccccccCHHHHHHHHHHHHHHHHHHHhc--CCcEEEE
Confidence 45789998777765 3588976543 333321100011 11 2234555555532 6899992
Q ss_pred CCCCCHHHHHHHHhcCCeEeecchHHHHHHH-HHhcC-----CCCChH-HHHHHHHHHHHHHHHHHHHH
Q 029526 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYM-DSLSR-----PKSDLI-HLMASAKEAMKAVVAEKMRL 185 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~-~~~~~-----~~~~~~-~~~~~~~~~~~~~v~~~i~~ 185 (192)
+-+ ....+....++|+.=++++......-. +.+.. .+.|+. .++....+.+++.+++.|+.
T Consensus 230 cG~-~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~ 297 (326)
T cd03307 230 CGN-TTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLED 297 (326)
T ss_pred CCC-ChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc
Confidence 212 234566677778887877665322221 22221 234665 44445567788888887764
No 333
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=79.22 E-value=51 Score=30.10 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=67.8
Q ss_pred cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029526 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 6 ~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
.||+.+=+---..+.++.++..+.+.+.. . ++.+ .- |. ...| ++++|.+|+++..=+
T Consensus 183 ~Gf~~~KiKvG~~~~~~di~~v~avRea~-~-~~~l------~v---Da------N~~w-~~~~A~~~~~~l~~~----- 239 (395)
T cd03323 183 YGFKSFKLKGGVLPGEEEIEAVKALAEAF-P-GARL------RL---DP------NGAW-SLETAIRLAKELEGV----- 239 (395)
T ss_pred cCCcEEEEecCCCCHHHHHHHHHHHHHhC-C-CCcE------EE---eC------CCCc-CHHHHHHHHHhcCcC-----
Confidence 58888866554445566666655555432 1 1111 10 10 1124 589999998765211
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecch
Q 029526 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNT 147 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T 147 (192)
.. |-. .|--|++-+.++++.+ ++|+.+ |-|-.+.++++.+++.| +.-+|+..
T Consensus 240 ---l~--~iE-eP~~d~~~~~~L~~~~---~~PIa~-dEs~~~~~~~~~~i~~~avdil~~d~ 292 (395)
T cd03323 240 ---LA--YLE-DPCGGREGMAEFRRAT---GLPLAT-NMIVTDFRQLGHAIQLNAVDIPLADH 292 (395)
T ss_pred ---CC--EEE-CCCCCHHHHHHHHHhc---CCCEEc-CCcccCHHHHHHHHHcCCCcEEeecc
Confidence 11 112 2434999999999988 699998 67777888999999888 55556653
No 334
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=79.15 E-value=6.8 Score=32.71 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
.+.+.++..+.+++.|+|+|=+=|-- |.|-++ -.+.++.++.|++.+ ++|+=.|==.--|+..+.+..++|...
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMD--g~fvpn-~~~g~~~i~~i~~~~---~~~~DvHLMv~~P~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMD--GHFVPN-LTFGPDIIKAIRKIT---DLPLDVHLMVENPERYIEEFAEAGADY 83 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEB--SSSSSS-B-B-HHHHHHHHTTS---SSEEEEEEESSSGGGHHHHHHHHT-SE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecc--cccCCc-ccCCHHHHHHHhhcC---CCcEEEEeeeccHHHHHHHHHhcCCCE
Confidence 46677888888999999999888755 567653 568889999999887 699999999999999999999999999
Q ss_pred eecchHH
Q 029526 143 FNVNTEV 149 (192)
Q Consensus 143 INi~T~l 149 (192)
|.+.-|.
T Consensus 84 i~~H~E~ 90 (201)
T PF00834_consen 84 ITFHAEA 90 (201)
T ss_dssp EEEEGGG
T ss_pred EEEcccc
Confidence 9987664
No 335
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=78.97 E-value=31 Score=30.99 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHH-HH--hCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh-----hCC
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFL-AH--SKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE-----TDI 79 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~-Ah--~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~-----Tgv 79 (192)
+++|||.--|+.+--+|....+-++- .+ .....+|.|. .+.+|+++.++- .|+
T Consensus 170 sd~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv-------------------~tleea~ea~~~~~~~~aga 230 (308)
T PLN02716 170 FDMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVET-------------------RTLEEVKEVLEYLSDTKTSL 230 (308)
T ss_pred CceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEE-------------------CCHHHHHHHHHhcccccCCC
Confidence 78999999888777666554333322 22 2234566662 235788888862 688
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|.+=.=--++ ++..-+-+++.|++.-+..+. .+||--=| |+..+.+++-.+.||.-|-++.-
T Consensus 231 DiImLDnm~~----~~~~~~~~~e~l~~av~~~~~-~~~lEaSG--GIt~~ni~~yA~tGVD~Is~Gal 292 (308)
T PLN02716 231 TRVMLDNMVV----PLENGDVDVSMLKEAVELING-RFETEASG--NVTLDTVHKIGQTGVTYISSGAL 292 (308)
T ss_pred CEEEeCCCcc----cccccCCCHHHHHHHHHhhCC-CceEEEEC--CCCHHHHHHHHHcCCCEEEeCcc
Confidence 8776532111 111123366767766555432 36666656 79999999999999988877653
No 336
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=78.61 E-value=20 Score=31.48 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=56.2
Q ss_pred CHHHHHHHhhhhCCcEE---EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 66 DVNQAEEFIDETDIDAL---AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~L---AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
||--|++ +++-||-++ +--||+-.|.- +..-|+-|.+.. ++|++.-+|-|.|.| ..+++++|..=
T Consensus 147 D~v~a~r-Led~Gc~aVMPlgsPIGSg~Gl~-------n~~~l~~i~e~~---~vpVivdAGIgt~sD-a~~AmElGaDg 214 (267)
T CHL00162 147 DPMLAKH-LEDIGCATVMPLGSPIGSGQGLQ-------NLLNLQIIIENA---KIPVIIDAGIGTPSE-ASQAMELGASG 214 (267)
T ss_pred CHHHHHH-HHHcCCeEEeeccCcccCCCCCC-------CHHHHHHHHHcC---CCcEEEeCCcCCHHH-HHHHHHcCCCE
Confidence 5555666 668888775 44677776653 445578888776 699999999998765 89999999999
Q ss_pred eecchHHH
Q 029526 143 FNVNTEVR 150 (192)
Q Consensus 143 INi~T~l~ 150 (192)
+=++|.+.
T Consensus 215 VL~nSaIa 222 (267)
T CHL00162 215 VLLNTAVA 222 (267)
T ss_pred Eeecceee
Confidence 99988875
No 337
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=78.55 E-value=9.3 Score=33.90 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=51.9
Q ss_pred hhhhCCcEEEEecCcC-------------CCCCCCCCCC---CCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029526 74 IDETDIDALAVCIGNV-------------HGKYPSSGPN---LKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~-------------HG~y~~~~p~---ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
+++.|+|.|.+.-++. .|.|.+ |. +.++.++++++.+. .++|++-=||--.+ ++..+++.
T Consensus 225 l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG--~~~~~~~l~~v~~l~~~~~-~~ipIi~~GGI~t~-~da~e~l~ 300 (327)
T cd04738 225 ALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG--APLKERSTEVLRELYKLTG-GKIPIIGVGGISSG-EDAYEKIR 300 (327)
T ss_pred HHHcCCcEEEEECCcccccccccccccCCCCccCC--hhhhHHHHHHHHHHHHHhC-CCCcEEEECCCCCH-HHHHHHHH
Confidence 5678999998765432 455653 33 33567777777663 14899988876655 56888888
Q ss_pred cCCeEeecchHHH
Q 029526 138 RGVRKFNVNTEVR 150 (192)
Q Consensus 138 ~Gi~KINi~T~l~ 150 (192)
.|..=|-++|.+.
T Consensus 301 aGAd~V~vg~~~~ 313 (327)
T cd04738 301 AGASLVQLYTGLV 313 (327)
T ss_pred cCCCHHhccHHHH
Confidence 9999999999884
No 338
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=78.41 E-value=16 Score=33.31 Aligned_cols=123 Identities=18% Similarity=0.246 Sum_probs=78.8
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
-+++|-+-+-||.++---+.=+...+++. +.++ ++--|+| ...+++.|+. +-++|+|++
T Consensus 116 L~~agvD~ivID~a~g~s~~~~~~ik~ik---~~~~-----~~~viaG------------NV~T~e~a~~-L~~aGad~v 174 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHGHSEHVIDMIKKIK---KKFP-----DVPVIAG------------NVVTYEGAKD-LIDAGADAV 174 (352)
T ss_dssp HHHTT-SEEEEE-SSTTSHHHHHHHHHHH---HHST-----TSEEEEE------------EE-SHHHHHH-HHHTT-SEE
T ss_pred HHHcCCCEEEccccCccHHHHHHHHHHHH---HhCC-----CceEEec------------ccCCHHHHHH-HHHcCCCEE
Confidence 35689999999999976655554444442 2333 2222322 2356677776 557999999
Q ss_pred EEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 83 AVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 83 AvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
=|.||.=.-.... +.| .+.-+.+..+..++.++|++-.||-..|-| +-||+.+|-.=|-+++.|
T Consensus 175 kVGiGpGsiCtTr~v~GvG~P--Q~tAv~~~a~~a~~~~v~iIADGGi~~sGD-i~KAla~GAd~VMlG~ll 243 (352)
T PF00478_consen 175 KVGIGPGSICTTREVTGVGVP--QLTAVYECAEAARDYGVPIIADGGIRTSGD-IVKALAAGADAVMLGSLL 243 (352)
T ss_dssp EESSSSSTTBHHHHHHSBSCT--HHHHHHHHHHHHHCTTSEEEEESS-SSHHH-HHHHHHTT-SEEEESTTT
T ss_pred EEeccCCcccccccccccCCc--HHHHHHHHHHHhhhccCceeecCCcCcccc-eeeeeeecccceeechhh
Confidence 9999965544321 134 345555566666556899999999998876 999999999988888776
No 339
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=78.16 E-value=26 Score=31.69 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred CCHHHHHHHhhhhCCcEEEE---ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCe
Q 029526 65 TDVNQAEEFIDETDIDALAV---CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAv---aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.||..|++.. +-|+-++-+ -||+=.| -.|.+.|+.|.+.. ++|++.-+|-|.|.| ..+|+++|..
T Consensus 206 ~d~~~a~~l~-~~g~~avmPl~~pIGsg~g-------v~~p~~i~~~~e~~---~vpVivdAGIg~~sd-a~~AmelGad 273 (326)
T PRK11840 206 DDPIAAKRLE-DAGAVAVMPLGAPIGSGLG-------IQNPYTIRLIVEGA---TVPVLVDAGVGTASD-AAVAMELGCD 273 (326)
T ss_pred CCHHHHHHHH-hcCCEEEeeccccccCCCC-------CCCHHHHHHHHHcC---CCcEEEeCCCCCHHH-HHHHHHcCCC
Confidence 4788888855 448743323 4664443 23788899998886 699999999998865 9999999999
Q ss_pred EeecchHHH
Q 029526 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
=+=++|.+.
T Consensus 274 gVL~nSaIa 282 (326)
T PRK11840 274 GVLMNTAIA 282 (326)
T ss_pred EEEEcceec
Confidence 999998873
No 340
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.11 E-value=5.3 Score=35.46 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=46.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|+++|.+.||+|-- +.| ..+++|++.+. .+.+|+- || -+++-+.+|. +||||.
T Consensus 212 ~a~~agaDiImLDnm--spe----~l~~av~~~~~-~~~leaS----GG--------------I~~~ni~~yA-~tGVD~ 265 (290)
T PRK06559 212 EAAAAGADIIMLDNM--SLE----QIEQAITLIAG-RSRIECS----GN--------------IDMTTISRFR-GLAIDY 265 (290)
T ss_pred HHHHcCCCEEEECCC--CHH----HHHHHHHHhcC-ceEEEEE----CC--------------CCHHHHHHHH-hcCCCE
Confidence 689999999999953 333 45677776664 4555553 11 3456777765 899998
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+.++- .|.+ .|.+||.
T Consensus 266 Is~ga-----lths-a~~~Dis 281 (290)
T PRK06559 266 VSSGS-----LTHS-AKSLDFS 281 (290)
T ss_pred EEeCc-----cccC-Cccccee
Confidence 87653 3543 3667763
No 341
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=78.10 E-value=4.9 Score=35.30 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.++++...|++.|..|=| . ...+.|.++-.+ ++.+...+ +.+.-.|-.|.+ ..+-.
T Consensus 5 ~~~~~l~~A~~~~yaV~A----f--------------n~~n~e~~~avi~aAe~~~~Pvi-i~~~~~~~~~~~--~~~~~ 63 (281)
T PRK06806 5 QMKELLKKANQENYGVGA----F--------------SVANMEMVMGAIKAAEELNSPII-LQIAEVRLNHSP--LHLIG 63 (281)
T ss_pred cHHHHHHHHHHCCceEEE----E--------------EeCCHHHHHHHHHHHHHhCCCEE-EEcCcchhccCC--hHHHH
Confidence 467888888887766532 1 123444544443 44554322 233334434532 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..+....+.. +||.+||--.|.+.+.+++|++.|+.-|-+.
T Consensus 64 ~~~~~~a~~~---~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 64 PLMVAAAKQA---KVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3444444444 6999999999999999999999999888763
No 342
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=77.96 E-value=14 Score=32.91 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
...+|++|+++.+.. ++|+|.=.-.|+ .+++++++.++|+.=|=++|.+.
T Consensus 188 ~~~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 188 LQAPYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred cCCCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhh
Confidence 346999999999987 599984444477 78889999999999999999984
No 343
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=77.71 E-value=5.1 Score=35.56 Aligned_cols=96 Identities=24% Similarity=0.294 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHH---hhhhCCc-EEEEecCcCCCCCCCCCCCCCHH
Q 029526 28 KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEF---IDETDID-ALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 28 k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~F---v~~TgvD-~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|++.+.|++.|..|=| + ..++.|..+.. .++++-. .|++|=|+. .|-++ ...
T Consensus 7 ~~ll~~Ake~~yAvpA----f--------------N~~nlE~~~AileaA~e~~sPvIiq~S~g~~--~y~gg----~~~ 62 (286)
T COG0191 7 KELLDKAKENGYAVPA----F--------------NINNLETLQAILEAAEEEKSPVIIQFSEGAA--KYAGG----ADS 62 (286)
T ss_pred HHHHHHHHHcCCceee----e--------------eecCHHHHHHHHHHHHHhCCCEEEEecccHH--HHhch----HHH
Confidence 7788888877765422 2 12334444443 3445543 445555544 46542 111
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
+.+-++......+||++||=-.|.+.+.+.+|++.|.+-+-++-
T Consensus 63 ~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDg 106 (286)
T COG0191 63 LAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDG 106 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecC
Confidence 22333333444479999999999999999999999999998754
No 344
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=77.59 E-value=14 Score=30.99 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=49.5
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh-cCCe
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE-RGVR 141 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~-~Gi~ 141 (192)
...||++|.+-+.+.|+|-+==| |.-+ ...-.++.|+++.+..+ -.+-+=-|+|+..+.+....+ .|++
T Consensus 125 ~~~d~~~al~~L~~lG~~rVLTS-----Gg~~--~a~~g~~~L~~lv~~a~---~~i~Im~GgGv~~~nv~~l~~~tg~~ 194 (201)
T PF03932_consen 125 EVPDPEEALEQLIELGFDRVLTS-----GGAP--TALEGIENLKELVEQAK---GRIEIMPGGGVRAENVPELVEETGVR 194 (201)
T ss_dssp GSSTHHHHHHHHHHHT-SEEEES-----TTSS--STTTCHHHHHHHHHHHT---TSSEEEEESS--TTTHHHHHHHHT-S
T ss_pred HhCCHHHHHHHHHhcCCCEEECC-----CCCC--CHHHHHHHHHHHHHHcC---CCcEEEecCCCCHHHHHHHHHhhCCe
Confidence 46789999999988899966533 2222 24457899999877763 234333445999999999988 9999
Q ss_pred Eeecc
Q 029526 142 KFNVN 146 (192)
Q Consensus 142 KINi~ 146 (192)
.|..+
T Consensus 195 ~~H~s 199 (201)
T PF03932_consen 195 EIHGS 199 (201)
T ss_dssp EEEET
T ss_pred EEeec
Confidence 98764
No 345
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.52 E-value=9.4 Score=33.99 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
++|+++|.+.||+|-- .....++.+++.+. .+.+|+- |. -+++-+.+|. +||||
T Consensus 219 ~eA~~aGaDiImLDnm------spe~l~~av~~~~~-~~~lEaS-----GG-------------It~~ni~~yA-~tGVD 272 (294)
T PRK06978 219 ETALAHGAQSVLLDNF------TLDMMREAVRVTAG-RAVLEVS-----GG-------------VNFDTVRAFA-ETGVD 272 (294)
T ss_pred HHHHHcCCCEEEECCC------CHHHHHHHHHhhcC-CeEEEEE-----CC-------------CCHHHHHHHH-hcCCC
Q ss_pred EEEEecCcCCCCCCCCCCCCCH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.+.++- .|.+ .|.|||
T Consensus 273 ~IS~ga-----lths-a~~lD~ 288 (294)
T PRK06978 273 RISIGA-----LTKD-VRATDY 288 (294)
T ss_pred EEEeCc-----cccC-Ccccce
No 346
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=77.32 E-value=19 Score=31.30 Aligned_cols=114 Identities=24% Similarity=0.235 Sum_probs=67.6
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCCe-EEEeccccccCCCCCccccccccCCCHHHH----HHHhhhhCCcEEEEecCc
Q 029526 14 DGSHLPFKDNISHTKYISFLAHSKGML-VEAELGRLSGTEDGLTVEDYEAKLTDVNQA----EEFIDETDIDALAVCIGN 88 (192)
Q Consensus 14 D~S~l~~eeNi~~Tk~vv~~Ah~~gv~-VEaElG~i~g~e~~~~~~~~~~~~T~peea----~~Fv~~TgvD~LAvaiGt 88 (192)
|+-.++++|.+..++.|++-+. .+ |=+.++.-+ ..++|+++ .++++++|++++=+-=
T Consensus 51 Dt~~vtl~em~~~~~~V~r~~~---~p~viaD~~fg~-------------y~~~~~~av~~a~r~~~~aGa~aVkiEd-- 112 (254)
T cd06557 51 STLPVTLDEMIYHTRAVRRGAP---RALVVADMPFGS-------------YQTSPEQALRNAARLMKEAGADAVKLEG-- 112 (254)
T ss_pred CCCCcCHHHHHHHHHHHHhcCC---CCeEEEeCCCCc-------------ccCCHHHHHHHHHHHHHHhCCeEEEEcC--
Confidence 4445689999999999988664 33 446653321 23557775 6677889998765531
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----------cCC---CCCHHHHHHH-------HhcCCeEe---e
Q 029526 89 VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----------GAS---GLSAELIKGC-------IERGVRKF---N 144 (192)
Q Consensus 89 ~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----------GgS---G~~~e~~~~~-------i~~Gi~KI---N 144 (192)
. -+..+.|+..++ .+||++-| ||- |-+++...++ .+.|..=| -
T Consensus 113 ---------~---~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 113 ---------G---AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred ---------c---HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 1 134455555553 26998833 433 3355433333 35665544 3
Q ss_pred cchHHHHHHHHHhc
Q 029526 145 VNTEVRKAYMDSLS 158 (192)
Q Consensus 145 i~T~l~~a~~~~~~ 158 (192)
+.+++....++.+.
T Consensus 180 v~~~~~~~i~~~v~ 193 (254)
T cd06557 180 VPAELAKEITEALS 193 (254)
T ss_pred CCHHHHHHHHHhCC
Confidence 45677777777663
No 347
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=77.16 E-value=15 Score=32.49 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=41.3
Q ss_pred CCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC---CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEE
Q 029526 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKG---MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALA 83 (192)
Q Consensus 7 GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g---v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 83 (192)
+.+.||+|-+.--+..+....+++.+.....| +-+|+- -=-+++-+++| .+||||.+
T Consensus 211 ~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~g~~~~~ieaS------------------GgI~~~~i~~~-a~~gvD~i- 270 (302)
T cd01571 211 KLDGVRLDTPSSRRGVFRYLIREVRWALDIRGYKHVKIFVS------------------GGLDEEDIKEL-EDVGVDAF- 270 (302)
T ss_pred CCcEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCeEEEEe------------------CCCCHHHHHHH-HHcCCCEE-
Confidence 58999999765333334444444444444332 222221 11367788887 48899954
Q ss_pred EecCcCCCCCCCCCCCCCHH
Q 029526 84 VCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 84 vaiGt~HG~y~~~~p~ld~~ 103 (192)
++|+.. |. .|.+|+.
T Consensus 271 -svGs~~--~~--~~~~D~s 285 (302)
T cd01571 271 -GVGTAI--SK--APPVDFT 285 (302)
T ss_pred -ECCccc--CC--CCCCCEE
Confidence 677765 43 2556665
No 348
>PRK06801 hypothetical protein; Provisional
Probab=76.98 E-value=5.4 Score=35.21 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCCCCCCCCCCH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.++++.+.|++.+..|=| + ...+.+.++..+ ++++...+ +.+...|-.|.+ ...=.
T Consensus 5 ~~~~~l~~A~~~~yaV~A----f--------------n~~n~e~~~avi~AAe~~~~PvI-l~~~~~~~~~~~--~~~~~ 63 (286)
T PRK06801 5 SLANGLAHARKHGYALGA----F--------------NVLDSHFLRALFAAAKQERSPFI-INIAEVHFKYIS--LESLV 63 (286)
T ss_pred cHHHHHHHHHHCCceEEE----E--------------eeCCHHHHHHHHHHHHHHCCCEE-EEeCcchhhcCC--HHHHH
Confidence 357778888877765522 1 123555555544 44554322 244444445532 22222
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+.. +||.+||--.|...+.+.+|++.|++-|-++
T Consensus 64 ~~~~~~a~~~---~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D 104 (286)
T PRK06801 64 EAVKFEAARH---DIPVVLNLDHGLHFEAVVRALRLGFSSVMFD 104 (286)
T ss_pred HHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHhCCcEEEEc
Confidence 2334444444 6999999999999999999999999998873
No 349
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=76.80 E-value=3.5 Score=38.09 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=54.2
Q ss_pred cCCCHHHHHHHhhhhCCc-EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCH----HHHHHHHh
Q 029526 63 KLTDVNQAEEFIDETDID-ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSA----ELIKGCIE 137 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD-~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~----e~~~~~i~ 137 (192)
..||.+.+++.+++.|-+ .|+| +=|.-+.|+- .| |.+++|.+.+.+.+||.++-|+=|+-- .++++|.+
T Consensus 137 l~td~~~ie~~i~~~G~~~iLcv-ltttscfapr-~~----D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~ 210 (389)
T PF05889_consen 137 LITDLEAIEAKIEELGADNILCV-LTTTSCFAPR-LP----DDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWR 210 (389)
T ss_dssp EEEHHHHHHHHHHHHCGGGEEEE-EEESSTTTTB---------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHhCCCCeEEE-EEecCccCCC-CC----ccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHh
Confidence 568888899999999998 5655 5566677763 23 456777777776799999999999954 46778888
Q ss_pred cCCeEeec
Q 029526 138 RGVRKFNV 145 (192)
Q Consensus 138 ~Gi~KINi 145 (192)
.|.-=+++
T Consensus 211 ~GRvda~v 218 (389)
T PF05889_consen 211 VGRVDAFV 218 (389)
T ss_dssp HSTCSEEE
T ss_pred cCCcceee
Confidence 88665655
No 350
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=76.80 E-value=11 Score=33.85 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=53.5
Q ss_pred CCCHHHHHHH---hhhhCCcEEEEecCcCCC--CCCCC-CCCCCHHHHHHHHhhhccCCccEE---eecCCCCCHHHHHH
Q 029526 64 LTDVNQAEEF---IDETDIDALAVCIGNVHG--KYPSS-GPNLKLDLLKDLHALSSKKGVLLV---LHGASGLSAELIKG 134 (192)
Q Consensus 64 ~T~peea~~F---v~~TgvD~LAvaiGt~HG--~y~~~-~p~ld~~~L~~I~~~~~~~~iPLV---lHGgSG~~~e~~~~ 134 (192)
.-++++..+. +.+.|||.+=|..|.-=| .|..+ ...-+++.++++.+..+ +..+. ++| -|. .+++++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg-~~~-~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK--RAKVAVLLLPG-IGT-VHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC--CCEEEEEeccC-ccC-HHHHHH
Confidence 3455555555 567899999998553211 11100 12347888888887764 33333 333 344 477999
Q ss_pred HHhcCCeEeecchHHHH
Q 029526 135 CIERGVRKFNVNTEVRK 151 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l~~ 151 (192)
+.++|+..|+|.|.+..
T Consensus 96 a~~~gvd~iri~~~~~e 112 (333)
T TIGR03217 96 AYDAGARTVRVATHCTE 112 (333)
T ss_pred HHHCCCCEEEEEeccch
Confidence 99999999999976544
No 351
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.70 E-value=39 Score=30.06 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecC
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIG 87 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 87 (192)
+++|||.--|+.+--++...-+-++..-++...||.|. .+.||+++++ +.|+|.+=.
T Consensus 167 sD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv-------------------~tleea~~a~-~agaDiImL--- 223 (290)
T PRK06559 167 SDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEV-------------------ESLAAAEEAA-AAGADIIML--- 223 (290)
T ss_pred cceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEEC-------------------CCHHHHHHHH-HcCCCEEEE---
Confidence 78999998888776554433222222222235566663 2447888877 558887754
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 88 NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 88 t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
-+.+++-++++-+..+. .+.+-.=| |+..+.++.-.+.||.-|=++..
T Consensus 224 ----------Dnmspe~l~~av~~~~~-~~~leaSG--GI~~~ni~~yA~tGVD~Is~gal 271 (290)
T PRK06559 224 ----------DNMSLEQIEQAITLIAG-RSRIECSG--NIDMTTISRFRGLAIDYVSSGSL 271 (290)
T ss_pred ----------CCCCHHHHHHHHHHhcC-ceEEEEEC--CCCHHHHHHHHhcCCCEEEeCcc
Confidence 23456667776665542 34444444 89999999999999988877653
No 352
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=76.62 E-value=15 Score=32.22 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=65.9
Q ss_pred cccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccC--CccEEe
Q 029526 61 EAKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKK--GVLLVL 121 (192)
Q Consensus 61 ~~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~--~iPLVl 121 (192)
...+++|+.+.++++ +.|+|.+.++=-+. +..++ ...+ ..-+++|-+.++.. ++|+..
T Consensus 159 ~~l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~-~~lsp--~~f~ef~~P~~k~i~~~i~~~~~~~~ilh 235 (335)
T cd00717 159 KMMYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWA-GALSP--EDFEEFVLPYLKRIIEEVKKRLPGVPVIL 235 (335)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCccc-ccCCH--HHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 346789988887765 36999876552111 22322 1111 11223444444322 355544
Q ss_pred ecCCCCCHHHHHHHHhcCCeEeecch--HHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029526 122 HGASGLSAELIKGCIERGVRKFNVNT--EVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 122 HGgSG~~~e~~~~~i~~Gi~KINi~T--~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
|.| |.. ..+....++|+.=++++. ++..+ .+.+.+ .+.++.. +....+.+++.+++.|+.++.
T Consensus 236 ~cg-~~~-~~~~~~~~~~~~~~s~d~~~dl~e~-k~~~g~~~~i~Gni~p~~-l~~~~e~i~~~v~~~l~~~~~ 305 (335)
T cd00717 236 FAK-GAG-GLLEDLAQLGADVVGLDWRVDLDEA-RKRLGPKVALQGNLDPAL-LYAPKEAIEKEVKRILKAFGG 305 (335)
T ss_pred EcC-CCH-HHHHHHHhcCCCEEEeCCCCCHHHH-HHHhCCCeEEEeCCChhh-hcCCHHHHHHHHHHHHHHhCc
Confidence 333 433 678888898987755544 44332 122221 2345543 333458899999999998764
No 353
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=76.62 E-value=15 Score=30.82 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=76.7
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEe-ccccccC---CCCC--ccccccccCCCHHHHHHHhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAE-LGRLSGT---EDGL--TVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaE-lG~i~g~---e~~~--~~~~~~~~~T~peea~~Fv~ 75 (192)
++-++||+.|=+-. |+..+ .+++.++..++|+.+-.- ++. ++. .... .....+......+++.++.+
T Consensus 23 ~~a~~Gf~~VEl~~---~~~~~---~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (258)
T PRK09997 23 KAAQCGFRGVEFMF---PYDYD---IEELKQVLASNKLEHTLHNLPA-GDWAAGERGIACIPGREEEFRDGVAAAIRYAR 95 (258)
T ss_pred HHHHhCCCEEEEcC---CCCCC---HHHHHHHHHHcCCcEEEEcCCC-CccccCcCccccCCCcHHHHHHHHHHHHHHHH
Confidence 46678999998854 44434 456666777899988541 111 110 0000 00001112234577778888
Q ss_pred hhCCcEEEEecCcCCCCCCCCCC-CCCHHHHHHHHhhhccCCccEEeec-------CCC-CCHHHHHHHH---hcCCeEe
Q 029526 76 ETDIDALAVCIGNVHGKYPSSGP-NLKLDLLKDLHALSSKKGVLLVLHG-------ASG-LSAELIKGCI---ERGVRKF 143 (192)
Q Consensus 76 ~TgvD~LAvaiGt~HG~y~~~~p-~ld~~~L~~I~~~~~~~~iPLVlHG-------gSG-~~~e~~~~~i---~~Gi~KI 143 (192)
+.|+..+-+..|...+.+....- ..=.+.|+++.+...+.++.|++|= +.. ...++..+.+ ..---|+
T Consensus 96 ~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v~~~~v~l 175 (258)
T PRK09997 96 ALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKI 175 (258)
T ss_pred HhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHhCCCCEEE
Confidence 99999887766654333321100 0012445666555555589999972 222 2334444443 3335788
Q ss_pred ecchHHHH
Q 029526 144 NVNTEVRK 151 (192)
Q Consensus 144 Ni~T~l~~ 151 (192)
+++|.-..
T Consensus 176 ~~D~~h~~ 183 (258)
T PRK09997 176 QYDIYHMQ 183 (258)
T ss_pred EeEHHHhh
Confidence 88876543
No 354
>PRK06852 aldolase; Validated
Probab=76.44 E-value=9.2 Score=34.17 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCH----H------
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSA----E------ 130 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~----e------ 130 (192)
-+.||+...+-+.+.|+|+++..-|-. +...... .++||+|| +++.+.. +
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~~~G~l----------------~~~~~~~--~~~~lIlkl~~~t~l~~~~~~~p~~~l~ 118 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFATQLGLI----------------ARYGMDY--PDVPYLVKLNSKTNLVKTSQRDPLSRQL 118 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEeCHHHH----------------Hhhcccc--CCCcEEEEECCCCCcCCcccCCccccce
Confidence 578999999999999999999875443 2221111 15899999 5544443 2
Q ss_pred -HHHHHHhcC----------CeEeecchHHHHHHHHHh
Q 029526 131 -LIKGCIERG----------VRKFNVNTEVRKAYMDSL 157 (192)
Q Consensus 131 -~~~~~i~~G----------i~KINi~T~l~~a~~~~~ 157 (192)
.+..|+++| ..-||++++.....++-+
T Consensus 119 ~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l 156 (304)
T PRK06852 119 LDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEA 156 (304)
T ss_pred ecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHH
Confidence 277899998 346788877765555433
No 355
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=76.41 E-value=6.2 Score=36.32 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
|.++|+.|+.|++.+ ++|+|+-|- ++.++.+++++.|+.=|-|+
T Consensus 238 ~~~tW~~i~~lr~~~---~~pvivKgV--~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWT---DLPIVLKGI--LHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhc---CCCEEEecC--CCHHHHHHHHHCCCCEEEEc
Confidence 779999999999988 699999987 77899999999999888764
No 356
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.10 E-value=58 Score=31.01 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=78.2
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.+++|.+-|-+| |+.-..+|.. +.++..++ ++-. +--++| ...++++|+.-+ +.|+|+
T Consensus 250 Lv~aGvd~i~vd-~a~g~~~~~~---~~i~~ir~~~~~~----~~V~aG------------nV~t~e~a~~li-~aGAd~ 308 (502)
T PRK07107 250 LVEAGADVLCID-SSEGYSEWQK---RTLDWIREKYGDS----VKVGAG------------NVVDREGFRYLA-EAGADF 308 (502)
T ss_pred HHHhCCCeEeec-CcccccHHHH---HHHHHHHHhCCCC----ceEEec------------cccCHHHHHHHH-HcCCCE
Confidence 467899999999 4444444442 22222222 2200 111111 247788888877 689999
Q ss_pred EEEecCcCCCCCCC---CCCCCCHHHHHHHHhhhcc----CC--ccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 82 LAVCIGNVHGKYPS---SGPNLKLDLLKDLHALSSK----KG--VLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 82 LAvaiGt~HG~y~~---~~p~ld~~~L~~I~~~~~~----~~--iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+=|++|.=.-.... +.+.-.+.-+.++.+..+. .+ +|+...||--.+-| +-||+.+|-.=+-++..|.
T Consensus 309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gd-i~KAla~GA~~vm~G~~~a 385 (502)
T PRK07107 309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYH-MTLALAMGADFIMLGRYFA 385 (502)
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhH-HHHHHHcCCCeeeeChhhh
Confidence 99977655322221 0112255666666665421 13 99999999877755 8999999999999998874
No 357
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=75.98 E-value=6.4 Score=34.52 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=27.7
Q ss_pred C-ccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 116 G-VLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 116 ~-iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+ +|++||-..|-+.+.+++|++.|+.-|-+.
T Consensus 73 ~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid 104 (282)
T TIGR01859 73 SIVPVALHLDHGSSYESCIKAIKAGFSSVMID 104 (282)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6 999999999999999999999999777553
No 358
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=75.89 E-value=12 Score=32.54 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=48.6
Q ss_pred HHHHHH-HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 67 VNQAEE-FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 67 peea~~-Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
++++.+ -+++-+.|.|.|+ |...|. ..+.+.|+++++.+ ++|+.+ |||+..+.+.+..+. ..=+=|
T Consensus 160 ~~~~~~~a~~~~~aDaviVt-G~~TG~------~~~~~~l~~vr~~~---~~PVlv--GSGvt~~Ni~~~l~~-ADG~IV 226 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVT-GKATGE------PPDPEKLKRVREAV---PVPVLV--GSGVTPENIAEYLSY-ADGAIV 226 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEC-CcccCC------CCCHHHHHHHHhcC---CCCEEE--ecCCCHHHHHHHHHh-CCEEEE
Confidence 455443 3477889999987 555442 34788899999887 588774 889999999887653 122236
Q ss_pred chHHH
Q 029526 146 NTEVR 150 (192)
Q Consensus 146 ~T~l~ 150 (192)
+|.++
T Consensus 227 GS~~K 231 (254)
T PF03437_consen 227 GSYFK 231 (254)
T ss_pred eeeee
Confidence 66654
No 359
>PRK08185 hypothetical protein; Provisional
Probab=75.89 E-value=6.6 Score=34.66 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 115 KGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 115 ~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
.+||.+||=-.|.+.|++++|++.|++-|-++
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 37999999999999999999999998888774
No 360
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=75.89 E-value=49 Score=28.22 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=76.0
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+.+++|.+-|.+=...+. |-...+++ ++.+| +++-.=. .|...-.....+...--+|.+..+.+++-
T Consensus 91 ~~l~~Ga~~vvigT~a~~---~p~~~~~~---~~~~g~~ivvslD~k~---~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~ 161 (243)
T TIGR01919 91 AALTGGRARVNGGTAALE---NPWWAAAV---IRYGGDIVAVGLDVLE---DGEWHTLGNRGWSDGGGDLEVLERLLDSG 161 (243)
T ss_pred HHHHcCCCEEEECchhhC---CHHHHHHH---HHHccccEEEEEEEec---CCceEEEECCCeecCCCcHHHHHHHHHhC
Confidence 467889999988443343 33344444 44333 3333311 11000000111111234777777777888
Q ss_pred CCcEE-EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHH---hcCCeEeecchHHH
Q 029526 78 DIDAL-AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCI---ERGVRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~L-AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i---~~Gi~KINi~T~l~ 150 (192)
|+.-+ --+|... |.. ..+|+++++++++.+ ++|+.-=||-+..+| ++++- ..|+.-+=++|.+.
T Consensus 162 g~~~ii~tdI~~d-Gt~----~G~d~~l~~~l~~~~---~~pviasGGv~s~eD-l~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 162 GCSRVVVTDSKKD-GLS----GGPNELLLEVVAART---DAIVAASGGSSLLDD-LRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred CCCEEEEEecCCc-ccC----CCcCHHHHHHHHhhC---CCCEEEECCcCCHHH-HHHHHhhccCCeeEEEEhHHHH
Confidence 87433 3333222 333 235899999999887 699999999996655 66553 45898888888773
No 361
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=75.81 E-value=53 Score=28.50 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=69.1
Q ss_pred hhhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~ 76 (192)
..++.|.+.+.+=|| .|+.||=.+..+.+++.+.. .++|=+=+|. .. .+.-+..+++++
T Consensus 29 ~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~-~~pvi~gv~~------~t---------~~~i~~a~~a~~ 92 (289)
T cd00951 29 WLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG-RVPVLAGAGY------GT---------ATAIAYAQAAEK 92 (289)
T ss_pred HHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-CCCEEEecCC------CH---------HHHHHHHHHHHH
Confidence 457889999999887 67889999888888888752 3444322111 00 111234455778
Q ss_pred hCCcEEEEecCcCCCCCCCCCCCC--CHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHHHHh
Q 029526 77 TDIDALAVCIGNVHGKYPSSGPNL--KLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKGCIE 137 (192)
Q Consensus 77 TgvD~LAvaiGt~HG~y~~~~p~l--d~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~~i~ 137 (192)
.|+|++.+.- -.|.. +.- =++-.++|.+.+ ++|+++. -|..+|.+.+.+..+
T Consensus 93 ~Gad~v~~~p----P~y~~--~~~~~i~~~f~~v~~~~---~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 93 AGADGILLLP----PYLTE--APQEGLYAHVEAVCKST---DLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred hCCCEEEECC----CCCCC--CCHHHHHHHHHHHHhcC---CCCEEEEeCCCCCCCHHHHHHHHh
Confidence 9999988742 12321 210 022234454444 7999998 445689999999886
No 362
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.71 E-value=6.9 Score=34.15 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCc-------ccc--c-----cccCCCHHHHHH----------Hh
Q 029526 19 PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-------VED--Y-----EAKLTDVNQAEE----------FI 74 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~-------~~~--~-----~~~~T~peea~~----------Fv 74 (192)
.-++.|..-|++++.+|++|..+=..|.|-|....... .+. . ...--+.+|.++ .+
T Consensus 71 ~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a 150 (327)
T cd02803 71 YDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRA 150 (327)
T ss_pred CCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999988888888764321100 000 0 000112233333 33
Q ss_pred hhhCCcEEEEecCcCCCC----------------CCCC---CCCCCHHHHHHHHhhhccCCccEEe--ecC----CCCCH
Q 029526 75 DETDIDALAVCIGNVHGK----------------YPSS---GPNLKLDLLKDLHALSSKKGVLLVL--HGA----SGLSA 129 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~----------------y~~~---~p~ld~~~L~~I~~~~~~~~iPLVl--HGg----SG~~~ 129 (192)
.+-|.|.+=+-.| ||- |.+. .+.+-.+++++|++.+.. ++||-+ +.. .|.+.
T Consensus 151 ~~aGfDgveih~~--~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~-d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 151 KEAGFDGVEIHGA--HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP-DFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHcCCCEEEEcch--hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC-CceEEEEechhccCCCCCCH
Confidence 4579999888765 442 2110 122336788888887732 467665 433 34555
Q ss_pred HH----HHHHHhcCCeEeecchH
Q 029526 130 EL----IKGCIERGVRKFNVNTE 148 (192)
Q Consensus 130 e~----~~~~i~~Gi~KINi~T~ 148 (192)
++ ++++.+.|+.=|++.+.
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCC
Confidence 55 45677889999987553
No 363
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=75.66 E-value=44 Score=28.50 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHHH-hCCCeEEEeccccc-c---------CCCCCccccccccCCCHHHHHHHhh---hhCCcEEEE
Q 029526 19 PFKDNISHTKYISFLAH-SKGMLVEAELGRLS-G---------TEDGLTVEDYEAKLTDVNQAEEFID---ETDIDALAV 84 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah-~~gv~VEaElG~i~-g---------~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAv 84 (192)
|+.+-+..+.++.+.-+ ...|.+-+=+---+ + .............+.+|++..+.++ +.|+.-+.+
T Consensus 5 ~~~~l~~~a~~~~~~~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l 84 (296)
T TIGR00433 5 PLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCL 84 (296)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 88888888888877655 23344444322101 1 0000000001124577888776654 468765543
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHHHHHHHhc
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~~~ 158 (192)
..+ |.++. +..-.+.+++|.+..+..++++.+|=| -+++|.+++..++|+..++++=+......+.++
T Consensus 85 ~~~---g~~~~--~~~~~~~~~~i~~~~~~~~i~~~~~~g-~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~ 152 (296)
T TIGR00433 85 VAS---GRGPK--DREFMEYVEAMVQIVEEMGLKTCATLG-LLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNII 152 (296)
T ss_pred EEe---cCCCC--hHHHHHHHHHHHHHHHhCCCeEEecCC-CCCHHHHHHHHHcCCCEEEEcccCCHHHHhhcc
Confidence 222 11111 211166778777765544677766644 578899999999999999998664333444443
No 364
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.63 E-value=20 Score=27.99 Aligned_cols=74 Identities=23% Similarity=0.162 Sum_probs=48.1
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHH----HHHHhc
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELI----KGCIER 138 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~----~~~i~~ 138 (192)
...+||+..+-+.+.++|.+.+|.=+.|... .=-+.++.+++.- -.++|+++=|...+|.+++ .++.++
T Consensus 35 ~~v~~e~~v~aa~~~~adiVglS~L~t~~~~------~~~~~~~~l~~~g-l~~v~vivGG~~~i~~~d~~~~~~~L~~~ 107 (128)
T cd02072 35 VLSPQEEFIDAAIETDADAILVSSLYGHGEI------DCKGLREKCDEAG-LKDILLYVGGNLVVGKQDFEDVEKRFKEM 107 (128)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccccCCHH------HHHHHHHHHHHCC-CCCCeEEEECCCCCChhhhHHHHHHHHHc
Confidence 4578899888889999999999853322211 1113334454431 1157777777677887666 668999
Q ss_pred CCeEe
Q 029526 139 GVRKF 143 (192)
Q Consensus 139 Gi~KI 143 (192)
|+..+
T Consensus 108 Gv~~v 112 (128)
T cd02072 108 GFDRV 112 (128)
T ss_pred CCCEE
Confidence 99765
No 365
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=75.33 E-value=11 Score=33.81 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=50.2
Q ss_pred hhhh------cCCCEeEeeCCCCCH---HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 2 EAIV------LGFDSLMVDGSHLPF---KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 2 ~ai~------~GFtSVM~D~S~l~~---eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
+|++ +|.+.||+|--.++. ++.....++.+++.+.. +.+|+- || -+++-+.+
T Consensus 218 ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~-~~lEaS----GG--------------It~~ni~~ 278 (308)
T PLN02716 218 EVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGR-FETEAS----GN--------------VTLDTVHK 278 (308)
T ss_pred HHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCC-ceEEEE----CC--------------CCHHHHHH
Confidence 6788 999999999875533 34666777777776532 445543 11 34567777
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|. +||||.+.++- .|.+ .|.+||.
T Consensus 279 yA-~tGVD~Is~Ga-----lths-a~~~Dis 302 (308)
T PLN02716 279 IG-QTGVTYISSGA-----LTHS-VKALDIS 302 (308)
T ss_pred HH-HcCCCEEEeCc-----cccC-CCccceE
Confidence 76 99999887653 3443 3667765
No 366
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=75.18 E-value=6.3 Score=34.82 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcEEEEecCcCCCCC-CCCCCCCC
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDALAVCIGNVHGKY-PSSGPNLK 101 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y-~~~~p~ld 101 (192)
.++++.+.|.+.|..|=| + ...+.|.++-.+ ++.+...+ +.+...|-.| .+
T Consensus 5 ~~k~iL~~A~~~~yAV~A----f--------------N~~n~e~~~avi~AAee~~sPvI-lq~~~~~~~~~~g------ 59 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPA----F--------------NINNLETINAVLEAAAEEKSPVI-IQFSNGAAKYIAG------ 59 (288)
T ss_pred cHHHHHHHHHHCCceEEE----E--------------EECCHHHHHHHHHHHHHHCCCEE-EECCcchhhccCC------
Confidence 457788888877765532 1 123445554443 44555332 2444444344 22
Q ss_pred HHHHHHH-HhhhccC--CccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 102 LDLLKDL-HALSSKK--GVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 102 ~~~L~~I-~~~~~~~--~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
++.+... +...... +||.+||--.|.+.|.+++|++.|.+-|-|+.
T Consensus 60 ~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDg 108 (288)
T TIGR00167 60 LGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDG 108 (288)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecC
Confidence 3333222 2222223 69999999999999999999999999998864
No 367
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=74.62 E-value=60 Score=28.61 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=48.6
Q ss_pred CCHHHHHHHhhhh------CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc
Q 029526 65 TDVNQAEEFIDET------DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER 138 (192)
Q Consensus 65 T~peea~~Fv~~T------gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~ 138 (192)
-++++|.+|++.. ++.++= ..-|.-|++.+.++++.+ ++|+++ |-|=.+..+++++++.
T Consensus 174 w~~~~A~~~~~~l~~l~~~~i~~iE-----------qP~~~~~~~~~~~l~~~~---~~Pia~-DEs~~~~~d~~~~~~~ 238 (320)
T PRK02714 174 LSLEEAKRWLQLCDRRLSGKIEFIE-----------QPLPPDQFDEMLQLSQDY---QTPIAL-DESVANLAQLQQCYQQ 238 (320)
T ss_pred CCHHHHHHHHHHHhhccCCCccEEE-----------CCCCcccHHHHHHHHHhC---CCCEEE-CCccCCHHHHHHHHHc
Confidence 4788999997653 333332 101334888999998887 699877 7777788899999998
Q ss_pred CCeE-eecch
Q 029526 139 GVRK-FNVNT 147 (192)
Q Consensus 139 Gi~K-INi~T 147 (192)
|... ||+.-
T Consensus 239 ~a~d~v~ik~ 248 (320)
T PRK02714 239 GWRGIFVIKP 248 (320)
T ss_pred CCCCEEEEcc
Confidence 7665 77753
No 368
>TIGR00035 asp_race aspartate racemase.
Probab=74.32 E-value=29 Score=28.99 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+|+++-|+|+++++.=|+|-.| .+|++.+ ++|++ ++.+.-...+-+.|..||=+=
T Consensus 64 l~~~~~~L~~~g~d~iviaCNTah~~~------------~~l~~~~---~iPii-----~i~~~~~~~~~~~~~~~VgvL 123 (229)
T TIGR00035 64 LIDIAVKLENAGADFIIMPCNTAHKFA------------EDIQKAI---GIPLI-----SMIEETAEAVKEDGVKKAGLL 123 (229)
T ss_pred HHHHHHHHHHcCCCEEEECCccHHHHH------------HHHHHhC---CCCEe-----chHHHHHHHHHHcCCCEEEEE
Confidence 356777888899999999999988643 3455555 57765 555555555555677777653
No 369
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.31 E-value=6.2 Score=35.57 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCc-EEEEecCcCCCCCCCCCCCC
Q 029526 25 SHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDID-ALAVCIGNVHGKYPSSGPNL 100 (192)
Q Consensus 25 ~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD-~LAvaiGt~HG~y~~~~p~l 100 (192)
-.++++.+.|++.+..|=| . ...+.+.++-.+ ++.+.. .|.++-| |..|.+ ..+
T Consensus 10 v~~k~lL~~A~~~~yAV~A----f--------------N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~g--~~~ 67 (321)
T PRK07084 10 VNTREMFAKAVKGGYAIPA----Y--------------NFNNMEQLQAIIQACVETKSPVILQVSKG--ARKYAN--ATL 67 (321)
T ss_pred cCHHHHHHHHHHCCceEEE----E--------------EeCCHHHHHHHHHHHHHhCCCEEEEechh--HHhhCC--chH
Confidence 4578888999987766532 1 123344444443 344432 3444444 335542 211
Q ss_pred CHHHHHHHHhhhccC--CccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 101 KLDLLKDLHALSSKK--GVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 101 d~~~L~~I~~~~~~~--~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
-......+....... .+|.+||--.|-+.|.+++|++.|..-|-|+-
T Consensus 68 ~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~ 116 (321)
T PRK07084 68 LRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDG 116 (321)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeC
Confidence 111222222222222 59999999999999999999999999998864
No 370
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=74.25 E-value=8.5 Score=34.49 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHHHhhhhCCcEEEEecCc-------------CCCCCCCCCC--CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHH
Q 029526 70 AEEFIDETDIDALAVCIGN-------------VHGKYPSSGP--NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKG 134 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt-------------~HG~y~~~~p--~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~ 134 (192)
..+-+++.|+|.|.++-++ ..|.|++ .+ .+.++.++++++.++ .++|++-=||--.++ +..+
T Consensus 230 ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG-~~~~~~~l~~v~~l~~~~~-~~ipIig~GGI~s~e-da~e 306 (344)
T PRK05286 230 IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG-RPLFERSTEVIRRLYKELG-GRLPIIGVGGIDSAE-DAYE 306 (344)
T ss_pred HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc-HHHHHHHHHHHHHHHHHhC-CCCCEEEECCCCCHH-HHHH
Confidence 3333567899999988665 2455653 12 245666777777662 149999999887765 4777
Q ss_pred HHhcCCeEeecchHHH
Q 029526 135 CIERGVRKFNVNTEVR 150 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l~ 150 (192)
.+..|..=|-++|.+.
T Consensus 307 ~l~aGAd~V~v~~~~~ 322 (344)
T PRK05286 307 KIRAGASLVQIYSGLI 322 (344)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 7789998888888764
No 371
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=73.97 E-value=31 Score=29.37 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=48.2
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
..+++.++|||.+=+.+ +. ..+-++++++.|.+... +..+..+. -...++++++..+|+..|++....
T Consensus 25 i~~~L~~~Gv~~iE~g~-------p~-~~~~~~e~~~~l~~~~~--~~~~~~~~--r~~~~~v~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 25 IARALDEAGVDEIEVGI-------PA-MGEEEREAIRAIVALGL--PARLIVWC--RAVKEDIEAALRCGVTAVHISIPV 92 (259)
T ss_pred HHHHHHHcCCCEEEEec-------CC-CCHHHHHHHHHHHhcCC--CCEEEEec--cCCHHHHHHHHhCCcCEEEEEEec
Confidence 34446679999998863 32 23346788888877532 45566563 235788999999999999997644
Q ss_pred HH
Q 029526 150 RK 151 (192)
Q Consensus 150 ~~ 151 (192)
..
T Consensus 93 s~ 94 (259)
T cd07939 93 SD 94 (259)
T ss_pred CH
Confidence 33
No 372
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.94 E-value=10 Score=34.56 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=67.9
Q ss_pred hhh-cCCC-EeEeeCCC-----C--CHHHHHHHHHHHHHHHHhCCCeEEEeccc------------cccCC----CCCcc
Q 029526 3 AIV-LGFD-SLMVDGSH-----L--PFKDNISHTKYISFLAHSKGMLVEAELGR------------LSGTE----DGLTV 57 (192)
Q Consensus 3 ai~-~GFt-SVM~D~S~-----l--~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~------------i~g~e----~~~~~ 57 (192)
+++ .|.. .+|+|+.. + +.++=++..+.+-++.+.+-..+|-=+-. +-..- -....
T Consensus 185 avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPI 264 (369)
T cd03314 185 KLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRI 264 (369)
T ss_pred HHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceE
Confidence 444 5665 79999976 4 66766655555544423234678854311 11000 01211
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
...+ ..+++.+.+++++.-.+|.+-+=+..+=|.+. ..+|.+.....++|+..|+.+
T Consensus 265 a~dE-s~~t~~d~~~li~~~a~div~~kl~k~GGIt~----------a~kia~lA~a~Gi~~~~h~~~ 321 (369)
T cd03314 265 VADE-WCNTLEDIRDFADAGAAHMVQIKTPDLGGIDN----------TIDAVLYCKEHGVGAYLGGSC 321 (369)
T ss_pred EecC-CcCCHHHHHHHHHhCCCCEEEecchhcCCHHH----------HHHHHHHHHHcCCcEEEeCCC
Confidence 1122 45689999999999999999998776655543 344555444448999999744
No 373
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.88 E-value=49 Score=27.75 Aligned_cols=82 Identities=11% Similarity=-0.037 Sum_probs=55.3
Q ss_pred hhhcCCCEeEeeC----CCCCH----HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029526 3 AIVLGFDSLMVDG----SHLPF----KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 3 ai~~GFtSVM~D~----S~l~~----eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
|-.+|-..+.+=. +..+. +..++..+++.++|.++||.+=-|-- +..+ ...+.+|+++.+++
T Consensus 99 a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~--~~~~--------~~~~~t~~~~~~l~ 168 (275)
T PRK09856 99 AKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPL--TPYE--------SNVVCNANDVLHAL 168 (275)
T ss_pred HHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC--CCCc--------ccccCCHHHHHHHH
Confidence 4566777776632 22233 44455568889999999988877732 1111 12467899999999
Q ss_pred hhhCCcEEEEecCcCCCCCC
Q 029526 75 DETDIDALAVCIGNVHGKYP 94 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y~ 94 (192)
+..+-+.+-+.+-+.|-.+.
T Consensus 169 ~~~~~~~v~~~~D~~h~~~~ 188 (275)
T PRK09856 169 ALVPSPRLFSMVDICAPYVQ 188 (275)
T ss_pred HHcCCCcceeEEeecchhcC
Confidence 99887777777888886544
No 374
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=73.76 E-value=60 Score=28.19 Aligned_cols=129 Identities=15% Similarity=0.234 Sum_probs=82.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC----CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG----MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g----v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+.+++|..-|-+=... ++....+.++|+.+| |++-+=.|.+. ...+.+. .--+|++..+.+++-
T Consensus 92 ~ll~~G~~rViiGt~a------v~~p~~v~~~~~~~g~rivv~lD~r~g~va-----v~GW~e~-s~~~~~~l~~~~~~~ 159 (241)
T COG0106 92 ALLDAGVARVIIGTAA------VKNPDLVKELCEEYGDRIVVALDARDGKVA-----VSGWQED-SGVELEELAKRLEEV 159 (241)
T ss_pred HHHHCCCCEEEEecce------ecCHHHHHHHHHHcCCcEEEEEEccCCccc-----ccccccc-ccCCHHHHHHHHHhc
Confidence 3466777777664444 444556777888886 44455444441 1112211 223566666666677
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc-CCeEeecchHHH
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER-GVRKFNVNTEVR 150 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~-Gi~KINi~T~l~ 150 (192)
|+..+=+.==+.-|.-. .+|++++++|.+.+ ++|+.--||-. +.++++++-+. |+.=+=+++.|.
T Consensus 160 g~~~ii~TdI~~DGtl~----G~n~~l~~~l~~~~---~ipviaSGGv~-s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 160 GLAHILYTDISRDGTLS----GPNVDLVKELAEAV---DIPVIASGGVS-SLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred CCCeEEEEecccccccC----CCCHHHHHHHHHHh---CcCEEEecCcC-CHHHHHHHHhcCCCcEEEEehHHh
Confidence 76555443222334333 35899999999999 69999999865 56779999888 899888888774
No 375
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=73.73 E-value=8.1 Score=34.33 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCC-CHHHHHHHHhcCCeEeecchHHH
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
...+|++|+++.+.. ++|+|.=.-.|+ .+++.+.+.++|+.=|=++|.+.
T Consensus 182 ~~~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ 232 (287)
T TIGR00343 182 LRVPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 232 (287)
T ss_pred cCCCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhh
Confidence 347899999999876 599996666688 88999999999999999999985
No 376
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=73.72 E-value=62 Score=30.19 Aligned_cols=107 Identities=7% Similarity=0.091 Sum_probs=67.3
Q ss_pred cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029526 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 6 ~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
.||+.+=+.-...+.++-++..+.+.+.. . ++.+ .-..+ ..| ++++|.+|+++-. +. +.
T Consensus 195 ~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~-d~~L------~vDAN---------~~w-t~~~Ai~~~~~Le-~~--~~ 253 (441)
T TIGR03247 195 YGFRDFKLKGGVLRGEEEIEAVTALAKRF-P-QARI------TLDPN---------GAW-SLDEAIALCKDLK-GV--LA 253 (441)
T ss_pred cCCCEEEEecCCCChHHHHHHHHHHHHhC-C-CCeE------EEECC---------CCC-CHHHHHHHHHHhh-hh--hc
Confidence 49998888766556667777766665532 1 2211 10111 123 6789999987653 21 21
Q ss_pred cCcCCCCCCCCCCCCC----HHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe
Q 029526 86 IGNVHGKYPSSGPNLK----LDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF 143 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld----~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI 143 (192)
.+-..-|.-| ++-++++++.+ ++|+++ |-|=.+..+++++++.|.+.|
T Consensus 254 ------~iEePv~~~d~~~~~~~la~Lr~~~---~iPIa~-dEs~~~~~~~~~li~~~avdi 305 (441)
T TIGR03247 254 ------YAEDPCGAEQGYSGREVMAEFRRAT---GLPTAT-NMIATDWRQMGHALQLQAVDI 305 (441)
T ss_pred ------eEeCCCCcccccchHHHHHHHHHhC---CCCEEc-CCccCCHHHHHHHHHhCCCCE
Confidence 1221123345 78889998887 699998 778788899999999885443
No 377
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.55 E-value=8 Score=34.18 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=29.1
Q ss_pred CccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 116 ~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
++|.+||=-.|.+.|.+++|++.|..-|-++
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D 104 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID 104 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe
Confidence 6999999999999999999999999998884
No 378
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=73.44 E-value=39 Score=31.46 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=34.0
Q ss_pred HHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 67 VNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 67 peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
++++.+|+++ .|.|.+-+.++ .|..| ....+.|+++-+...+.++|+.+|-.
T Consensus 188 ~~~~~~~v~~~~~~g~~~i~~~~~-p~~~~-----~~s~e~l~~~~~~A~~~g~~v~~H~~ 242 (488)
T PRK06151 188 LEEAIAFIKRVDGAHNGLVRGMLA-PDRIE-----TCTVDLLRRTAAAARELGCPVRLHCA 242 (488)
T ss_pred HHHHHHHHHHhhcccCCceEEEEc-CCCCC-----CCCHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5778888876 46677655544 24333 34566777776666656788888875
No 379
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=73.26 E-value=7.3 Score=33.28 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=46.5
Q ss_pred hcCCCEeEeeCCCCC----HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 5 VLGFDSLMVDGSHLP----FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 5 ~~GFtSVM~D~S~l~----~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+..|+.|.||.|-.. -..+-..++.++.+||..|+.|=|| |.|. ++-.+++.+-|||
T Consensus 169 ~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE-----GVEt--------------~~ql~~L~~~G~~ 229 (256)
T COG2200 169 RLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE-----GVET--------------EEQLDLLRELGCD 229 (256)
T ss_pred hCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe-----ecCC--------------HHHHHHHHHcCCC
Confidence 356888999998763 3455578999999999999999999 5543 3667779999999
Q ss_pred EE
Q 029526 81 AL 82 (192)
Q Consensus 81 ~L 82 (192)
.+
T Consensus 230 ~~ 231 (256)
T COG2200 230 YL 231 (256)
T ss_pred eE
Confidence 64
No 380
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=73.02 E-value=19 Score=31.59 Aligned_cols=118 Identities=15% Similarity=0.236 Sum_probs=67.3
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccCCccEEeec
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++||.+.++++ +.|+|.+-++-..+-+.+-+ |+ +=..-+++|-+.++.. |.++|=
T Consensus 163 ~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~ls--p~~f~ef~~p~~~~i~~~i~~~--~~ilH~ 238 (339)
T PRK06252 163 WLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLG--PKMFEEFVLPYLNKIIDEVKGL--PTILHI 238 (339)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccC--HHHHHHHHHHHHHHHHHHhccC--CcEEEE
Confidence 46789988866654 36899887765444332321 21 1122245555555322 677885
Q ss_pred CCCCCHHHHHHHHhcCCeEeecchHHHHHHH-HHhcC-----CCCCh-HHHHHHHHHHHHHHHHHHHH
Q 029526 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYM-DSLSR-----PKSDL-IHLMASAKEAMKAVVAEKMR 184 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~v~~~i~ 184 (192)
+.+. ...+....++|+.-++++........ +.+.. .+.|+ ..+.....+.+++.+++.|+
T Consensus 239 cG~~-~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~ 305 (339)
T PRK06252 239 CGDL-TSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLE 305 (339)
T ss_pred CCCc-hHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHH
Confidence 4333 34577777889888887654322221 22221 23466 44444566778888887776
No 381
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=72.97 E-value=56 Score=27.51 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=52.5
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
.|..+..+.+++.. |.+-+= |+.-.+.+. --..-++.++++++..++ .++|++.=| |+..+.+.++++.|+
T Consensus 116 ~Tp~~~i~~~l~~~--D~vlvM--tV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdG--GI~~eni~~l~~aGA 189 (220)
T PRK08883 116 ATPLHHLEYIMDKV--DLILLM--SVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDG--GVKVDNIREIAEAGA 189 (220)
T ss_pred CCCHHHHHHHHHhC--CeEEEE--EecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEEC--CCCHHHHHHHHHcCC
Confidence 46667777776644 554442 222122210 112345667777776542 248998877 677999999999999
Q ss_pred eEeecchHHH
Q 029526 141 RKFNVNTEVR 150 (192)
Q Consensus 141 ~KINi~T~l~ 150 (192)
.-+=++|.+.
T Consensus 190 d~vVvGSaIf 199 (220)
T PRK08883 190 DMFVAGSAIF 199 (220)
T ss_pred CEEEEeHHHh
Confidence 9999999875
No 382
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=72.93 E-value=4.5 Score=35.69 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecch
Q 029526 105 LKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT 147 (192)
Q Consensus 105 L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T 147 (192)
++.+.+.. +||++||--.|-+.|.+++|++.|..-|-++-
T Consensus 65 ~~~~a~~~---~vPValHLDH~~~~e~i~~ai~~GftSVM~Dg 104 (287)
T PF01116_consen 65 VKAAAEEA---SVPVALHLDHGKDFEDIKRAIDAGFTSVMIDG 104 (287)
T ss_dssp HHHHHHHS---TSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-
T ss_pred HHHHHHHc---CCCEEeecccCCCHHHHHHHHHhCcccccccC
Confidence 45555555 69999999999999999999999999998864
No 383
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=72.85 E-value=7.7 Score=35.33 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcE-EEEecCcCCCCCCCCCCCCCH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDA-LAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~-LAvaiGt~HG~y~~~~p~ld~ 102 (192)
++++.+.|++.+..|=| . ...+.+.++-.+ ++++... |.++-| |-.|.+ ...=.
T Consensus 4 ~k~iL~~A~~~~yAV~A----f--------------N~~n~e~~~aii~AAEe~~sPvIlq~s~~--~~~~~g--~~~~~ 61 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA----F--------------NVNNMEQMRAIMEAADKTDSPVILQASRG--ARSYAG--APFLR 61 (347)
T ss_pred HHHHHHHHHHcCceEEE----E--------------eeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhhCC--HHHHH
Confidence 57788888877665532 1 123444544443 4455433 333333 444542 11112
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
..++.+.+..+ .||.+||=-.|.+.+++++|++.|.+-|-|+-.
T Consensus 62 ~~~~~~ae~~~--~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS 105 (347)
T TIGR01521 62 HLILAAIEEYP--HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGS 105 (347)
T ss_pred HHHHHHHHhCC--CCcEEEECCCCCCHHHHHHHHHcCCCEEeecCc
Confidence 22333433331 399999999999999999999999999988644
No 384
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=72.79 E-value=18 Score=32.60 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-----CCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPS-----SGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-----~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
.+++.|+..+ +.|+|.+-|++|.-.-.... +.|.-.+..+.++++.. ++|+..-||--.+.| +-||+.+|
T Consensus 146 ~t~e~a~~l~-~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~---~~pVIadGGIr~~~D-i~KALa~G 220 (321)
T TIGR01306 146 GTPEAVRELE-NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGD-IAKSIRFG 220 (321)
T ss_pred CCHHHHHHHH-HcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc---CCeEEEECCcCcHHH-HHHHHHcC
Confidence 4677777754 78999999997633211000 01211235667777665 699999999887765 88999999
Q ss_pred CeEeecchHH
Q 029526 140 VRKFNVNTEV 149 (192)
Q Consensus 140 i~KINi~T~l 149 (192)
..-+=++..|
T Consensus 221 Ad~Vmig~~~ 230 (321)
T TIGR01306 221 ASMVMIGSLF 230 (321)
T ss_pred CCEEeechhh
Confidence 9999988766
No 385
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=72.66 E-value=17 Score=32.67 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=52.9
Q ss_pred CCCHHHHHHH---hhhhCCcEEEEecCcCCC----CCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCCCHHHHHH
Q 029526 64 LTDVNQAEEF---IDETDIDALAVCIGNVHG----KYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGLSAELIKG 134 (192)
Q Consensus 64 ~T~peea~~F---v~~TgvD~LAvaiGt~HG----~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~~~e~~~~ 134 (192)
.-++++..+. +.+.|||.+=|..|+-=| .|.. ...-+++.++.+++..+ +..+... =|-+. .+++++
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~-~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~-~~dl~~ 96 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGF-GAHTDEEYIEAAAEVVK--QAKIAALLLPGIGT-VDDLKM 96 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCC-CCCCHHHHHHHHHHhCC--CCEEEEEeccCccc-HHHHHH
Confidence 3455555554 567999999998765322 1111 12237899999877654 3444432 23343 478999
Q ss_pred HHhcCCeEeecchHH
Q 029526 135 CIERGVRKFNVNTEV 149 (192)
Q Consensus 135 ~i~~Gi~KINi~T~l 149 (192)
+.++|+.-|.|.|-+
T Consensus 97 a~~~gvd~iri~~~~ 111 (337)
T PRK08195 97 AYDAGVRVVRVATHC 111 (337)
T ss_pred HHHcCCCEEEEEEec
Confidence 999999999998743
No 386
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=72.32 E-value=10 Score=33.07 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=56.8
Q ss_pred CHHHHHHHhhhhCCcEE---EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 66 DVNQAEEFIDETDIDAL---AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~L---AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
||--|++ +++.||-++ +--||+--|.- +..-|+-|.+.. +||++.--|-|.|.+ -..+.++|..-
T Consensus 140 D~v~arr-Lee~GcaavMPl~aPIGSg~G~~-------n~~~l~iiie~a---~VPviVDAGiG~pSd-Aa~aMElG~Da 207 (262)
T COG2022 140 DPVLARR-LEEAGCAAVMPLGAPIGSGLGLQ-------NPYNLEIIIEEA---DVPVIVDAGIGTPSD-AAQAMELGADA 207 (262)
T ss_pred CHHHHHH-HHhcCceEeccccccccCCcCcC-------CHHHHHHHHHhC---CCCEEEeCCCCChhH-HHHHHhcccce
Confidence 5555666 568888765 55688877754 334467777776 699999999999976 67788999999
Q ss_pred eecchHHHH
Q 029526 143 FNVNTEVRK 151 (192)
Q Consensus 143 INi~T~l~~ 151 (192)
|=++|.+..
T Consensus 208 VL~NTAiA~ 216 (262)
T COG2022 208 VLLNTAIAR 216 (262)
T ss_pred eehhhHhhc
Confidence 999998853
No 387
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=72.09 E-value=62 Score=27.65 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=68.3
Q ss_pred hhhhcCCCEeEeeCCC-----CCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH---HH
Q 029526 2 EAIVLGFDSLMVDGSH-----LPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE---EF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~-----l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~---~F 73 (192)
..++.|.+.+.+=||. |+.+|=.+..+.+++.+.. .+.| +.|... ++.+++. ++
T Consensus 29 ~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-~~~v------i~gv~~-----------~~~~~~~~~a~~ 90 (284)
T cd00950 29 FQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-RVPV------IAGTGS-----------NNTAEAIELTKR 90 (284)
T ss_pred HHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-CCcE------EeccCC-----------ccHHHHHHHHHH
Confidence 4678899999998985 7888888888777776542 2222 222211 2233433 34
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029526 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
+++.|+|.+.+.-=. .|+.. +.==++-.++|.+.+ ++|++|+ .|..++.+.+++..+.
T Consensus 91 a~~~G~d~v~~~~P~---~~~~~-~~~l~~~~~~ia~~~---~~pi~lYn~P~~~g~~ls~~~~~~L~~~ 153 (284)
T cd00950 91 AEKAGADAALVVTPY---YNKPS-QEGLYAHFKAIAEAT---DLPVILYNVPGRTGVNIEPETVLRLAEH 153 (284)
T ss_pred HHHcCCCEEEEcccc---cCCCC-HHHHHHHHHHHHhcC---CCCEEEEEChhHhCCCCCHHHHHHHhcC
Confidence 667899987776221 12211 111122334455444 7999998 5677999999998764
No 388
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=72.07 E-value=34 Score=29.27 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHH----HHHHHhhhccCCccEEeecCCCCCH----HHHHHHHhcCCe
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDL----LKDLHALSSKKGVLLVLHGASGLSA----ELIKGCIERGVR 141 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~----L~~I~~~~~~~~iPLVlHGgSG~~~----e~~~~~i~~Gi~ 141 (192)
+.+.+++.|+|.+-+.+|.-|..... ...-|++. ++++++.+ ++|+.+-=+.+.+. +..+.+.+.|+.
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~~~~~-~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNVGGGR-QLGQDPEAVANLLKAVKAAV---DIPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCCCCCc-ccccCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 34445567999999999987754422 12234544 45555544 68988876667774 345567788988
Q ss_pred Eeecc
Q 029526 142 KFNVN 146 (192)
Q Consensus 142 KINi~ 146 (192)
=|.+.
T Consensus 192 ~i~~~ 196 (289)
T cd02810 192 GLTAI 196 (289)
T ss_pred EEEEE
Confidence 88874
No 389
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=71.92 E-value=50 Score=31.70 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=78.1
Q ss_pred hhhhcCCCEeEeeCCCCCH---HHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhC
Q 029526 2 EAIVLGFDSLMVDGSHLPF---KDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETD 78 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~---eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tg 78 (192)
.++..|+|+|+-|--..|. .++++ ...+.|+..-+.+=.- +...-.... .+.....-++++.++++++-|
T Consensus 72 ~al~~GvTtvv~~P~~~~~v~g~~~~~---~~~~~a~~~~~d~~~~---~~s~vp~~~-~e~~g~~~~~~~i~~~~~~~~ 144 (552)
T TIGR01178 72 LVLPHGVTTVVSDPHEIANVNGEDGIN---FMLNNAKKTPLNFYFM---LPSCVPALQ-FETSGAVLTAEDIDELMELDE 144 (552)
T ss_pred HHHCCCEEEEEcCCCCCCCCCCHHHHH---HHHHHhhcCCcEEEEE---CCCCCCCCc-ccCCCCccCHHHHHHHHcCCC
Confidence 3677899999988666554 45554 4444555444444222 211000000 011112237889999998878
Q ss_pred CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 79 IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 79 vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
|=.|..-. .|+. -..=|-+.|+.|... ++.+.++-.|.- +++.+++++....|+.=-.-.|-
T Consensus 145 V~glke~m-----~~~~-v~~~d~~~l~~i~~a-~~~g~~I~gHap-~l~~~eL~~~~~aGi~~dHe~~s 206 (552)
T TIGR01178 145 VLGLAEVM-----DYPG-VINADIEMLNKINSA-RKRNKVIDGHCP-GLSGKLLNKYISAGISNDHESTS 206 (552)
T ss_pred ccEEEEEe-----cchh-hcCCCHHHHHHHHHH-HhCCCEEEecCC-CCCHHHHHHHHHcCCCCCcCcCC
Confidence 77666543 2332 112377888888543 344677777864 99999999999999875444443
No 390
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=71.54 E-value=26 Score=26.88 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=47.4
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHH----HHHhcCCeEe
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIK----GCIERGVRKF 143 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~----~~i~~Gi~KI 143 (192)
.+-.+-+.+.|+|++-+..=..+-.+. .....++++.+.... ++|+..|....-+.+.+. .+.+.|..-|
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEA---ETDDKEVLKEVAAET---DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccC---CCccccHHHHHHhhc---CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 333444556788887765433332221 111113466666655 699999998877777663 7888898888
Q ss_pred ecchHH
Q 029526 144 NVNTEV 149 (192)
Q Consensus 144 Ni~T~l 149 (192)
.++-..
T Consensus 89 ~l~~~~ 94 (200)
T cd04722 89 EIHGAV 94 (200)
T ss_pred EEeccC
Confidence 776554
No 391
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=71.25 E-value=82 Score=28.70 Aligned_cols=115 Identities=10% Similarity=0.174 Sum_probs=71.2
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---CC
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---DI 79 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---gv 79 (192)
.++.||+.+=+.-...++++.++..+.+.+.... ++.+=.+ . ...| ++++|.+|+++. ++
T Consensus 171 ~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~-~~~l~vD--------------a-N~~w-~~~~A~~~~~~l~~~~~ 233 (385)
T cd03326 171 YLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGD-GARLAVD--------------A-NGRF-DLETAIAYAKALAPYGL 233 (385)
T ss_pred HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCC-CCeEEEE--------------C-CCCC-CHHHHHHHHHHhhCcCC
Confidence 3456777777665555566666555555433221 1222110 0 1124 678999998764 44
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC-----eEeecchHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV-----RKFNVNTEV 149 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi-----~KINi~T~l 149 (192)
.++= ..-|.=|++-++++++.+ ++|+.. |-|=....++++.++.|. .-+|+...-
T Consensus 234 ~~iE-----------eP~~~~d~~~~~~L~~~~---~iPIa~-gEs~~~~~~~~~li~~~a~~~~~div~~d~~~ 293 (385)
T cd03326 234 RWYE-----------EPGDPLDYALQAELADHY---DGPIAT-GENLFSLQDARNLLRYGGMRPDRDVLQFDPGL 293 (385)
T ss_pred CEEE-----------CCCCccCHHHHHHHHhhC---CCCEEc-CCCcCCHHHHHHHHHhCCccccCCEEEeCchh
Confidence 4332 112335889999999887 699776 777778899999999985 477876443
No 392
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.14 E-value=28 Score=30.78 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=64.7
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEE
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAV 84 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 84 (192)
+++||+.--|+.+--++.. .++.+++. ...+|.|.. +.+|+++.+ +.|+|.+=.
T Consensus 164 ~d~vlikdNHi~~~G~i~~---ai~~~r~~~~~~~kIeVEv~-------------------tleea~ea~-~~gaDiI~L 220 (281)
T PRK06106 164 DDAVLIKDNHIAIAGGVRE---AIRRARAGVGHLVKIEVEVD-------------------TLDQLEEAL-ELGVDAVLL 220 (281)
T ss_pred hhhhccCHHHHHHhCcHHH---HHHHHHHhCCCCCcEEEEeC-------------------CHHHHHHHH-HcCCCEEEe
Confidence 5688888777665554333 23333322 345666632 346778777 668887654
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
= +.+++-+++.-+..+. ..|+-.=| |+..+.+++-.+.||.-|=++.-.
T Consensus 221 D-------------n~s~e~l~~av~~~~~-~~~leaSG--GI~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 221 D-------------NMTPDTLREAVAIVAG-RAITEASG--RITPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred C-------------CCCHHHHHHHHHHhCC-CceEEEEC--CCCHHHHHHHHhcCCCEEEeChhh
Confidence 2 2345556655555432 46665555 899999999999999988877643
No 393
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=71.13 E-value=26 Score=30.20 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=50.7
Q ss_pred ccCCCHHHHHHHhhh---hCCcEEEEe-cCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeecCCCCCHHHHHHHH
Q 029526 62 AKLTDVNQAEEFIDE---TDIDALAVC-IGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 62 ~~~T~peea~~Fv~~---TgvD~LAva-iGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgSG~~~e~~~~~i 136 (192)
..+.+|+++.+.+++ -|.|.+=|. .+|--| +..-.+.-.++||..+=+..++ .++||.+|= ...+-+++|+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al 92 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG-ADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAAL 92 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHH
Confidence 356788888888764 599999983 112111 1100011123344433222222 279999994 5568899999
Q ss_pred hcCCeEeecchHH
Q 029526 137 ERGVRKFNVNTEV 149 (192)
Q Consensus 137 ~~Gi~KINi~T~l 149 (192)
+.|+.=||=-|..
T Consensus 93 ~~G~~iINsis~~ 105 (257)
T TIGR01496 93 EAGADIINDVSGG 105 (257)
T ss_pred HcCCCEEEECCCC
Confidence 9999999965554
No 394
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=71.11 E-value=29 Score=30.60 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=64.9
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCCCC---HHHHHHHHhhhccC--CccEEee
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPNLK---LDLLKDLHALSSKK--GVLLVLH 122 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~ld---~~~L~~I~~~~~~~--~iPLVlH 122 (192)
..+++||.+.+.++ +.|+|.+.++=-+. +..++ ...+ ..-+++|-+.+++. ++|+..|
T Consensus 163 ~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~-~~lsp--~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~ 239 (338)
T TIGR01464 163 FMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWA-GALSP--EDFEEFVLPYLKKIIEEVKARLPNVPVILF 239 (338)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCcc-ccCCH--HHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 46789988776654 37999876652211 22322 1111 11223444333221 3565443
Q ss_pred cCCCCCHHHHHHHHhcCCeEeecc--hHHHHHHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhCC
Q 029526 123 GASGLSAELIKGCIERGVRKFNVN--TEVRKAYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFGS 188 (192)
Q Consensus 123 GgSG~~~e~~~~~i~~Gi~KINi~--T~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 188 (192)
.| |.. ..+....++|+.=++++ +++..+. +.+.+ .+.+|..+ ....+.+++.+++.|+.++.
T Consensus 240 cg-~~~-~~~~~~~~~~~~~~s~d~~~dl~e~~-~~~~~~~~i~Gni~p~~l-~gt~e~i~~~v~~~l~~~~~ 308 (338)
T TIGR01464 240 AK-GAG-HLLEELAETGADVVGLDWTVDLKEAR-KRVGPGVAIQGNLDPAVL-YAPEEALEEKVEKILEAFGG 308 (338)
T ss_pred eC-CcH-HHHHHHHhcCCCEEEeCCCCCHHHHH-HHhCCCeeEEeCCChHHh-cCCHHHHHHHHHHHHHHhcc
Confidence 32 333 46777778898777554 4443332 22221 23466444 44678899999999998763
No 395
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.07 E-value=47 Score=25.87 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=82.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHH-HHHHHHHHHHHHhCCCeEEEeccccccCCCCCc--ccc--ccccCCCHHHHHHHhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDN-ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT--VED--YEAKLTDVNQAEEFIDE 76 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeN-i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~--~~~--~~~~~T~peea~~Fv~~ 76 (192)
.|-++||+.|=+.........+ -....++.+++..+|+.|=+=-........... ... .+..+..-..+.++.++
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~ 82 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKR 82 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHH
Confidence 3567888888776554433322 345678999999999985443322222111100 000 11123445666777778
Q ss_pred hCCcEEEEecCc--CCCCCCCCCCCCCH----HHHHHHHhhhccCCccEEeecCCCCCH------HHHHHHH-hcCC--e
Q 029526 77 TDIDALAVCIGN--VHGKYPSSGPNLKL----DLLKDLHALSSKKGVLLVLHGASGLSA------ELIKGCI-ERGV--R 141 (192)
Q Consensus 77 TgvD~LAvaiGt--~HG~y~~~~p~ld~----~~L~~I~~~~~~~~iPLVlHGgSG~~~------e~~~~~i-~~Gi--~ 141 (192)
.|+..+-+..|. .+.... ..-++ +.|++|.+...+.++-++|+--.+... +++.+.+ +.+- .
T Consensus 83 lg~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 159 (213)
T PF01261_consen 83 LGAKYIVVHSGRYPSGPEDD---TEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNV 159 (213)
T ss_dssp HTBSEEEEECTTESSSTTSS---HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTE
T ss_pred hCCCceeecCcccccccCCC---HHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcc
Confidence 899999999884 332221 11122 234445555444578899987766653 5555544 3554 7
Q ss_pred EeecchHHHH
Q 029526 142 KFNVNTEVRK 151 (192)
Q Consensus 142 KINi~T~l~~ 151 (192)
+++++|.-..
T Consensus 160 ~i~~D~~h~~ 169 (213)
T PF01261_consen 160 GICFDTGHLI 169 (213)
T ss_dssp EEEEEHHHHH
T ss_pred eEEEehHHHH
Confidence 8888876543
No 396
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=70.97 E-value=29 Score=31.79 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
.+..+-+.+.|+|++++.=-|..-.|.. ..-++..|.++.+.. ++|++ +|+ -.+.++.+++.+.|+.=|-++
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~s--g~~~p~~l~~~i~~~---~IPVI-~G~-V~t~e~A~~~~~aGaDgV~~G 216 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVS--TSGEPLNLKEFIGEL---DVPVI-AGG-VNDYTTALHLMRTGAAGVIVG 216 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccC--CCCCHHHHHHHHHHC---CCCEE-EeC-CCCHHHHHHHHHcCCCEEEEC
Confidence 4555557789999999864343333421 112466666666655 69987 455 677788999999998887654
No 397
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.62 E-value=66 Score=27.35 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=67.1
Q ss_pred hhhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH---HH
Q 029526 2 EAIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE---EF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~---~F 73 (192)
..++.|.+.|.+=|| .|+.+|-.+..+.+++.+.. .+.|= .|... ++.+++. +.
T Consensus 26 ~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~-~~~vi------~gv~~-----------~~~~~~i~~a~~ 87 (281)
T cd00408 26 FLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG-RVPVI------AGVGA-----------NSTREAIELARH 87 (281)
T ss_pred HHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC-CCeEE------EecCC-----------ccHHHHHHHHHH
Confidence 356788888888777 46789999999988888752 23332 22211 1122333 34
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----cCCCCCHHHHHHHHh
Q 029526 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----GASGLSAELIKGCIE 137 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~ 137 (192)
+++.|+|.+.+.-- .|....+.==++-.++|.+.+ ++|++++ -|..++.+.+++..+
T Consensus 88 a~~~Gad~v~v~pP----~y~~~~~~~~~~~~~~ia~~~---~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 88 AEEAGADGVLVVPP----YYNKPSQEGIVAHFKAVADAS---DLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHcCCCEEEECCC----cCCCCCHHHHHHHHHHHHhcC---CCCEEEEECccccCCCCCHHHHHHHhc
Confidence 67789998887421 121101111122234454444 7999987 367888999998876
No 398
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=70.39 E-value=39 Score=28.97 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=47.4
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHH----HHHHhhhhCCcEEEEecCcC
Q 029526 14 DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQ----AEEFIDETDIDALAVCIGNV 89 (192)
Q Consensus 14 D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pee----a~~Fv~~TgvD~LAvaiGt~ 89 (192)
|...++++|.+..++.|++-+...=|.+-.|-| .+.+|++ +++|++ +|++.+=+==|
T Consensus 51 D~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G----------------~g~~~~~~~~~~~~l~~-aGa~gv~iED~-- 111 (240)
T cd06556 51 DTLPYPVNDVPYHVRAVRRGAPLALIVADLPFG----------------AYGAPTAAFELAKTFMR-AGAAGVKIEGG-- 111 (240)
T ss_pred CCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCC----------------CCcCHHHHHHHHHHHHH-cCCcEEEEcCc--
Confidence 666779999999999999877522233333322 2334455 566665 89886654211
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 90 HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 90 HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
. --.++++.+++. .+|++=|=+.
T Consensus 112 --------~-~~~~~i~ai~~a----~i~ViaRtd~ 134 (240)
T cd06556 112 --------E-WHIETLQMLTAA----AVPVIAHTGL 134 (240)
T ss_pred --------H-HHHHHHHHHHHc----CCeEEEEeCC
Confidence 1 123455555544 4888877443
No 399
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=70.37 E-value=15 Score=31.37 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 99 NLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 99 ~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
..+.+.++.+++.++ ++||.. ||-=-+.++++++.++|..+|.++|-+-.
T Consensus 164 ~v~~e~i~~v~~~~~--~~pl~v-GGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 164 PVPPELVAEVKKVLD--KARLFV-GGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred CcCHHHHHHHHHHcC--CCCEEE-ecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 367888999998874 599988 44445668899999999999999997753
No 400
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=70.29 E-value=23 Score=31.20 Aligned_cols=112 Identities=21% Similarity=0.360 Sum_probs=61.2
Q ss_pred hhhcCCCEeE-------eeCCCCCHHHHHHHH-------HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHH
Q 029526 3 AIVLGFDSLM-------VDGSHLPFKDNISHT-------KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVN 68 (192)
Q Consensus 3 ai~~GFtSVM-------~D~S~l~~eeNi~~T-------k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~pe 68 (192)
..+.||+.|- |||. |-+|++.| -++.+.||+.|.-. -..-.+++
T Consensus 104 lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~Gmgy~~EVemi~~A~~~gl~T-------------------~~yvf~~e 161 (268)
T PF09370_consen 104 LKELGFSGVQNFPTVGLIDGQ---FRQNLEETGMGYDREVEMIRKAHEKGLFT-------------------TAYVFNEE 161 (268)
T ss_dssp HHHHT-SEEEE-S-GGG--HH---HHHHHHHTT--HHHHHHHHHHHHHTT-EE---------------------EE-SHH
T ss_pred HHHhCCceEEECCcceeeccH---HHHHHHhcCCCHHHHHHHHHHHHHCCCee-------------------eeeecCHH
Confidence 3567887773 5542 67776654 35577788655321 11346899
Q ss_pred HHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH----HHHHHHHhhhcc--CCccEEeecCCCCCHHHHHHHHh
Q 029526 69 QAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL----DLLKDLHALSSK--KGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~----~~L~~I~~~~~~--~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
||++++ +-|+|.|-+-+|-..|.-.+.+..+.+ ++.++|.+.... .++=...|||-=..+++.+...+
T Consensus 162 ~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~ 235 (268)
T PF09370_consen 162 QARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLR 235 (268)
T ss_dssp HHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHH
T ss_pred HHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHh
Confidence 999988 899999999999999875432222333 344555554433 35667789998888888877643
No 401
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=70.26 E-value=20 Score=30.75 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred ChhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE-----------------------eccccccCCCCCcc
Q 029526 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA-----------------------ELGRLSGTEDGLTV 57 (192)
Q Consensus 1 ~~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa-----------------------ElG~i~g~e~~~~~ 57 (192)
++++|+|...||+ |.=++.+..+++++.|+-.-..+-+ ++.-+.--|.....
T Consensus 78 ~~~Ld~Ga~gIiv-----P~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av 152 (249)
T TIGR02311 78 KQLLDIGAQTLLV-----PMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREAL 152 (249)
T ss_pred HHHhCCCCCEEEe-----cCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHH
Q ss_pred ccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCH----HHHHHHHhhhccCCccEEeecCCCCCHHHHH
Q 029526 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL----DLLKDLHALSSKKGVLLVLHGASGLSAELIK 133 (192)
Q Consensus 58 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~----~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~ 133 (192)
+.+.+++..-|||+|.+.-+=.--.... ....+. +.++++.+.+...+.+. |-...+.++.+
T Consensus 153 ----------~n~~eI~a~~gvd~l~~G~~DLs~slG~-~~~~~~~~~~~a~~~v~~~~~~a~~~~---Gi~~~~~~~~~ 218 (249)
T TIGR02311 153 ----------DNLEEIAAVEGVDGVFIGPADLAASMGH-LGNPSHPEVQAAIDDAIERIKAAGKAA---GILTADPKLAR 218 (249)
T ss_pred ----------HHHHHHHCCCCCcEEEECHHHHHHhcCC-CCCCCChHHHHHHHHHHHHHHHcCCce---eecCCCHHHHH
Q ss_pred HHHhcCCeEeecchH---HHHHHHHHhc
Q 029526 134 GCIERGVRKFNVNTE---VRKAYMDSLS 158 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~---l~~a~~~~~~ 158 (192)
+.++.|+.=+-+++| |+.++.+.+.
T Consensus 219 ~~~~~G~~~~~~~~D~~~l~~~~~~~~~ 246 (249)
T TIGR02311 219 QYLKLGALFVAVGVDTTLLARGAEALAA 246 (249)
T ss_pred HHHHcCCCEEEEchHHHHHHHHHHHHHH
No 402
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=70.22 E-value=5.7 Score=34.80 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=65.7
Q ss_pred cccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccCCc-cEEe
Q 029526 61 EAKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKKGV-LLVL 121 (192)
Q Consensus 61 ~~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~~i-PLVl 121 (192)
...+++||.++++++ +.|+|.+-++- ..+.+-+ |+ +=+..+++|-+.++..+. |.++
T Consensus 164 ~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d--~~~~~is--p~~f~e~~~P~~k~i~~~i~~~g~~~~~l 239 (343)
T PF01208_consen 164 MDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFD--SSGSLIS--PEMFEEFILPYLKKIIDAIKEAGKDPVIL 239 (343)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEE--TTGGGS---HHHHHHHTHHHHHHHHHHHHHHETE-EEE
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--cccCCCC--HHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 346789999888876 47999777665 3322221 21 112223444444443357 9999
Q ss_pred ecCCCCCHHHHHHHHhcCCeEeecchHHHH-HHHHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHH
Q 029526 122 HGASGLSAELIKGCIERGVRKFNVNTEVRK-AYMDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRL 185 (192)
Q Consensus 122 HGgSG~~~e~~~~~i~~Gi~KINi~T~l~~-a~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~ 185 (192)
|-+ |.....+....++|+.=+|++...-. ...+.+.. .+.++..++....+.+++.+++.|+.
T Consensus 240 H~c-G~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~ 308 (343)
T PF01208_consen 240 HIC-GNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEE 308 (343)
T ss_dssp EET-THG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHH
T ss_pred EEC-CchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHH
Confidence 966 33444778888899998998755432 22223322 12366434447788899999998883
No 403
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=70.21 E-value=22 Score=33.90 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=52.3
Q ss_pred HHHHhhhhCCcEEEEecCc-CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC-------CCCC----HHHHHHHHh
Q 029526 70 AEEFIDETDIDALAVCIGN-VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA-------SGLS----AELIKGCIE 137 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt-~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg-------SG~~----~e~~~~~i~ 137 (192)
+.+.+.+.|++++=+-=|. .+-.|.- -..=+|+||+.|++.+. ++||-+.-- .-.| ..+++++++
T Consensus 32 ia~~ld~~G~~siE~~GGatfd~~~rf-l~Edpwerlr~lr~~~~--nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~ 108 (499)
T PRK12330 32 ACEDIDNAGYWSVECWGGATFDACIRF-LNEDPWERLRTFRKLMP--NSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAE 108 (499)
T ss_pred HHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC--CCeEEEEEcccccCCccCcchhHHHHHHHHHHH
Confidence 4455677899999885221 1211111 12225999999999885 577776652 3344 457889999
Q ss_pred cCCeEeecchHHHH
Q 029526 138 RGVRKFNVNTEVRK 151 (192)
Q Consensus 138 ~Gi~KINi~T~l~~ 151 (192)
+|+.-|.|+..+..
T Consensus 109 ~Gidi~RIfd~lnd 122 (499)
T PRK12330 109 NGMDVFRVFDALND 122 (499)
T ss_pred cCCCEEEEEecCCh
Confidence 99999999966543
No 404
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=69.82 E-value=16 Score=33.49 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhhCCcEEEE--------e-----------c--CcCCCCCCCCCCCC---CHHHHHHHHhhhccCCccEE
Q 029526 65 TDVNQAEEFIDETDIDALAV--------C-----------I--GNVHGKYPSSGPNL---KLDLLKDLHALSSKKGVLLV 120 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAv--------a-----------i--Gt~HG~y~~~~p~l---d~~~L~~I~~~~~~~~iPLV 120 (192)
|+..+..+-+++.|+|.|.. . + .|..|.|.+ |.+ .++.+.++++.+...++|++
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG--~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCG--PAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccc--hhhhHHHHHHHHHHHhccccCCCCEE
Confidence 44555555566789999882 1 2 234456764 444 56666666665421158999
Q ss_pred eecCCCCCHHHHHHHHhcCCeEeecchHHHH
Q 029526 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 121 lHGgSG~~~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
==||-...+| ..+.+..|..=|-++|.+..
T Consensus 258 g~GGI~s~~d-a~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRD-AAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHH-HHHHHHhCCChheeeeeecc
Confidence 8888776666 55567799999999998753
No 405
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=69.56 E-value=22 Score=26.59 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLL 105 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L 105 (192)
.++++-++|...|+.+|.+-..+ .+........+.|++-++ |+++|. +
T Consensus 17 la~k~k~~~~e~gi~~~i~a~~~-------------------~e~~~~~~~~~~DvIll~------------PQi~~~-~ 64 (104)
T PRK09590 17 MAKKTTEYLKEQGKDIEVDAITA-------------------TEGEKAIAAAEYDLYLVS------------PQTKMY-F 64 (104)
T ss_pred HHHHHHHHHHHCCCceEEEEecH-------------------HHHHHhhccCCCCEEEEC------------hHHHHH-H
Confidence 34566788888888777653333 233333334455766542 777776 4
Q ss_pred HHHHhhhccCCccEEe
Q 029526 106 KDLHALSSKKGVLLVL 121 (192)
Q Consensus 106 ~~I~~~~~~~~iPLVl 121 (192)
++|++.+...++|+..
T Consensus 65 ~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 65 KQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHhhhcCCCEEE
Confidence 6777766545677765
No 406
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=69.43 E-value=23 Score=31.33 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=51.1
Q ss_pred CHHHHHHHhhhhCCcEEEEec---CcCCCCCCCCCCCCCHHH-HHHHHhhhccCCccEEeecCCCCCH--H---HHHHHH
Q 029526 66 DVNQAEEFIDETDIDALAVCI---GNVHGKYPSSGPNLKLDL-LKDLHALSSKKGVLLVLHGASGLSA--E---LIKGCI 136 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvai---Gt~HG~y~~~~p~ld~~~-L~~I~~~~~~~~iPLVlHGgSG~~~--e---~~~~~i 136 (192)
|+-.| +.+++.|.++++.|= -.++| |+. .-.+.++. +..+++.++..++||..=.-+|-.+ + .+++.+
T Consensus 24 D~lSA-ri~e~aGf~ai~~ss~~va~slG-~pD-~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~ 100 (290)
T TIGR02321 24 NPLVA-KLAEQAGFGGIWGSGFELSASYA-VPD-ANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYE 100 (290)
T ss_pred CHHHH-HHHHHcCCCEEEECHHHHHHHCC-CCC-cccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHH
Confidence 44444 447889999988753 23477 664 24566653 3334444433479999888777654 3 277889
Q ss_pred hcCCeEeec
Q 029526 137 ERGVRKFNV 145 (192)
Q Consensus 137 ~~Gi~KINi 145 (192)
+.|++=|||
T Consensus 101 ~aGvagi~I 109 (290)
T TIGR02321 101 AAGASAIVM 109 (290)
T ss_pred HcCCeEEEE
Confidence 999999999
No 407
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.10 E-value=28 Score=30.41 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHhhhccC--CccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 98 PNLKLDLLKDLHALSSKK--GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~--~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
|.+++.-|+.|++..+.. ++|+.==||--..++ ..+++..|..=|-++|.+.
T Consensus 223 ~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~d-a~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 223 AYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRG-AFRMRLAGASAVQVGTALG 276 (294)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHH-HHHHHHcCCCceeEchhhh
Confidence 667777775555443322 399998888776655 6666779999999999986
No 408
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=69.09 E-value=43 Score=28.64 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhCC-CeEEEecccc-c--cCCCCCccccccccCCCHHHHHHHhh--------------hhCCcEEE
Q 029526 22 DNISHTKYISFLAHSKG-MLVEAELGRL-S--GTEDGLTVEDYEAKLTDVNQAEEFID--------------ETDIDALA 83 (192)
Q Consensus 22 eNi~~Tk~vv~~Ah~~g-v~VEaElG~i-~--g~e~~~~~~~~~~~~T~peea~~Fv~--------------~TgvD~LA 83 (192)
.++..+.+..+++++.. ++|-+-++.- . ..--+.. .-....|++|+...++++ +.|+|.+-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~v~~~~~GP~Tla~~l~~~~-~~~~~~~~~p~~~~~ll~~i~~~~~~~~~~~~eaG~d~i~ 162 (306)
T cd00465 84 FREAPALEHITAVRSLEEFPTAGAAGGPFTFTHHSMSMG-DALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAKALQ 162 (306)
T ss_pred hhHHHHHHHHHHHHhccccceEeecCCHHHHHHHHHccc-HHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 46667777777777764 3333332110 0 0000000 001234778876665543 35899887
Q ss_pred Eec--CcCCCCCCCCCCCCCH-----HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH---HHHHH
Q 029526 84 VCI--GNVHGKYPSSGPNLKL-----DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE---VRKAY 153 (192)
Q Consensus 84 vai--Gt~HG~y~~~~p~ld~-----~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~---l~~a~ 153 (192)
+.= ++....+-+ |+ .| ..+++|-+.+...+.|++||-.-+. ...+....++|+.=+|+... +..+.
T Consensus 163 i~dp~~~~~~~~is--~~-~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~-~~~~~~l~~~~~d~~~~d~~~~d~~~~~ 238 (306)
T cd00465 163 IHEPAFSQINSFLG--PK-MFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA-ADLLEEMIQLGVDVISFDMTVNEPKEAI 238 (306)
T ss_pred EecccccccCCCCC--HH-HHHHHHHHHHHHHHHHHhhcCCceEEEECCCH-HHHHHHHHHhCcceEecccccCCHHHHH
Confidence 652 222211111 22 12 2234444433333689999977665 45688888999988887654 33332
Q ss_pred HHHhcC-----CCCChHHHHHHHHHHHHHHHHHHHHHhC
Q 029526 154 MDSLSR-----PKSDLIHLMASAKEAMKAVVAEKMRLFG 187 (192)
Q Consensus 154 ~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~i~~~g 187 (192)
+.+.. .+.++. ++....+.+.+.+++.++.++
T Consensus 239 -~~~~~~~~i~Ggv~~~-~~~~~~e~i~~~v~~~l~~~~ 275 (306)
T cd00465 239 -EKVGEKKTLVGGVDPG-YLPATDEECIAKVEELVERLG 275 (306)
T ss_pred -HHhCCCEEEECCCCcc-ccCCCHHHHHHHHHHHHHHhC
Confidence 22221 122333 223344778888888888765
No 409
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=69.05 E-value=32 Score=30.18 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=64.2
Q ss_pred ccCCCHHHHHHHhh--------------hhCCcEEEEecCcCCCCCCCCCCC----CCHHHHHHHHhhhccCCccEEeec
Q 029526 62 AKLTDVNQAEEFID--------------ETDIDALAVCIGNVHGKYPSSGPN----LKLDLLKDLHALSSKKGVLLVLHG 123 (192)
Q Consensus 62 ~~~T~peea~~Fv~--------------~TgvD~LAvaiGt~HG~y~~~~p~----ld~~~L~~I~~~~~~~~iPLVlHG 123 (192)
..+++|+.+.++++ +.|+|.+-++-..+-+.+-+ |+ +=..-+++|-+.++..+.+.++|=
T Consensus 163 ~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~ls--p~~f~e~~~p~~k~i~~~i~~~g~~~ilH~ 240 (340)
T TIGR01463 163 WISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLIS--PETYKEFGLPYQKRLFAYIKEIGGITVLHI 240 (340)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccC--HHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 46788988866653 47899777664332221211 21 112223444444432346778885
Q ss_pred CCCCCHHHHHHHHhcCCeEeecchHHHHHHHHH-hcC-----CCCChHHHHH-HHHHHHHHHHHHHHH
Q 029526 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS-LSR-----PKSDLIHLMA-SAKEAMKAVVAEKMR 184 (192)
Q Consensus 124 gSG~~~e~~~~~i~~Gi~KINi~T~l~~a~~~~-~~~-----~~~~~~~~~~-~~~~~~~~~v~~~i~ 184 (192)
+... ...+....++|+.-+++....-...... +.+ .+.||..++. ...+.+++.+++.++
T Consensus 241 CG~~-~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI~~~v~~~l~ 307 (340)
T TIGR01463 241 CGFT-QPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKVKKLAKEVLY 307 (340)
T ss_pred CCCc-hhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHHHHHHHHHHH
Confidence 5443 3346666778988888655443222222 221 2346755553 455667777777665
No 410
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.95 E-value=15 Score=34.42 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHhhhhCCcEEEEecC-cCCC--CCCCCCCCCCHHHHHHHHhhhccCCccEEeec-------CCCCC----HHHHHHH
Q 029526 70 AEEFIDETDIDALAVCIG-NVHG--KYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG-------ASGLS----AELIKGC 135 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiG-t~HG--~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG-------gSG~~----~e~~~~~ 135 (192)
..+.+.+.|++.+=+.=| |.+- .|.. +. .+++|+.|++... +++|.++. =+-.| .++++++
T Consensus 31 ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~--e~-p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A 105 (448)
T PRK12331 31 ILEKLDNAGYHSLEMWGGATFDACLRFLN--ED-PWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVESFVQKS 105 (448)
T ss_pred HHHHHHHcCCCEEEecCCccchhhhccCC--CC-HHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHHHHHHHH
Confidence 445577889999998422 1111 2222 22 6999999998764 58887433 22223 3567899
Q ss_pred HhcCCeEeecchHH
Q 029526 136 IERGVRKFNVNTEV 149 (192)
Q Consensus 136 i~~Gi~KINi~T~l 149 (192)
+++|+..|+|...+
T Consensus 106 ~~~Gvd~irif~~l 119 (448)
T PRK12331 106 VENGIDIIRIFDAL 119 (448)
T ss_pred HHCCCCEEEEEEec
Confidence 99999999998665
No 411
>PRK03739 2-isopropylmalate synthase; Validated
Probab=68.90 E-value=52 Score=31.68 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCeE-EEeccccccCCCCCccccccccCCCHHHHHHHhhhh------CCcE-EEEecCcCC
Q 029526 19 PFKDNISHTKYISFLAHSKGMLV-EAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET------DIDA-LAVCIGNVH 90 (192)
Q Consensus 19 ~~eeNi~~Tk~vv~~Ah~~gv~V-EaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T------gvD~-LAvaiGt~H 90 (192)
+.+|+++..++.+++|+.+|..+ ...++.--+.|| ..-|+|+-+.++++.- |+|. .-+.+--.=
T Consensus 143 t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~ED--------asR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTv 214 (552)
T PRK03739 143 DRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPES--------FTGTELDFALEVCDAVIDVWQPTPERKVILNLPATV 214 (552)
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCceeEEEEeccc--------CCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCC
Confidence 67999999999999999987410 000111112232 1238999998887762 4442 223333333
Q ss_pred CCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeec--CCCCCHHHHHHHHhcCCeEee
Q 029526 91 GKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHG--ASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 91 G~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHG--gSG~~~e~~~~~i~~Gi~KIN 144 (192)
|.. .|.-=.++++.|++.+.. .++||-+|+ ..|+.-..--.|+..|+..|+
T Consensus 215 G~~---~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 215 EMS---TPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVE 268 (552)
T ss_pred cCc---CHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 332 254445677777766521 136777766 457777778888999999887
No 412
>PLN02826 dihydroorotate dehydrogenase
Probab=68.89 E-value=34 Score=31.76 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=55.2
Q ss_pred CHHHHHHHhhhhCCcEEEEecC--------------cCCCCCCCCCCCCC---HHHHHHHHhhhccCCccEEeecCCCCC
Q 029526 66 DVNQAEEFIDETDIDALAVCIG--------------NVHGKYPSSGPNLK---LDLLKDLHALSSKKGVLLVLHGASGLS 128 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAvaiG--------------t~HG~y~~~~p~ld---~~~L~~I~~~~~~~~iPLVlHGgSG~~ 128 (192)
++++..+-+.+.|+|.+.++-- +..|.+.+ +.|. .+.+.++++.+. .++||+-=||-...
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG--~pl~~~sl~~v~~l~~~~~-~~ipIIgvGGI~sg 353 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSG--KPLFDLSTEVLREMYRLTR-GKIPLVGCGGVSSG 353 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCC--ccccHHHHHHHHHHHHHhC-CCCcEEEECCCCCH
Confidence 3455555567899999987742 23455654 3333 445556665553 14888888877655
Q ss_pred HHHHHHHHhcCCeEeecchHHHH
Q 029526 129 AELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 129 ~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
+ +..+.+.+|-+=|-++|.+.+
T Consensus 354 ~-Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 354 E-DAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred H-HHHHHHHhCCCeeeecHHHHh
Confidence 4 577888999999999998764
No 413
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.80 E-value=79 Score=27.82 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEe
Q 029526 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVC 85 (192)
Q Consensus 8 FtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 85 (192)
+++||+=.-|+.+- .+. +.++.++.+. ..||.|. .+.+|+++.+ +.|+|.+=.=
T Consensus 154 sd~vLikdnHi~~~-~i~---~av~~~r~~~~~~kIeVEv-------------------~~leea~~a~-~agaDiI~LD 209 (278)
T PRK08385 154 SDAILIKDNHLALV-PLE---EAIRRAKEFSVYKVVEVEV-------------------ESLEDALKAA-KAGADIIMLD 209 (278)
T ss_pred cccEEEccCHHHHH-HHH---HHHHHHHHhCCCCcEEEEe-------------------CCHHHHHHHH-HcCcCEEEEC
Confidence 67899888887665 333 3333343332 3344441 2457888877 5788865431
Q ss_pred cCcCCCCCCCCCCCCCHHHHHHHHhhhcc----CCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 86 IGNVHGKYPSSGPNLKLDLLKDLHALSSK----KGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 86 iGt~HG~y~~~~p~ld~~~L~~I~~~~~~----~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
+..++.|+++.+..+. ..+.|-.=| |+..+.+++-.+.||.-|=++...
T Consensus 210 -------------n~~~e~l~~~v~~l~~~~~~~~~~leaSG--GI~~~ni~~yA~tGvD~Is~galt 262 (278)
T PRK08385 210 -------------NMTPEEIREVIEALKREGLRERVKIEVSG--GITPENIEEYAKLDVDVISLGALT 262 (278)
T ss_pred -------------CCCHHHHHHHHHHHHhcCcCCCEEEEEEC--CCCHHHHHHHHHcCCCEEEeChhh
Confidence 2256667776665432 134555555 889999999999999988877654
No 414
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.41 E-value=12 Score=33.16 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=28.9
Q ss_pred CccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 116 ~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
++|++||=-.|-+.|.+++|++.|.+-|-++
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D 107 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMID 107 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 3899999999999999999999999998885
No 415
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=68.23 E-value=17 Score=28.37 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=38.5
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCC-CCCCCCHHHHHHHHhhhc
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPS-SGPNLKLDLLKDLHALSS 113 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~~p~ld~~~L~~I~~~~~ 113 (192)
.+|.++.+.+++.||-..+|+||+.++.+.+ +....|.+.|++|.+.+.
T Consensus 119 ~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tg 168 (180)
T cd01467 119 IDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTG 168 (180)
T ss_pred CCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcC
Confidence 4577888888889999999999998855432 124689999999998874
No 416
>PRK14847 hypothetical protein; Provisional
Probab=68.22 E-value=46 Score=30.14 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCe-----EEEeccccccCCCCCccccccccCCCHHHHHHHhhhh----C-----CcEEE
Q 029526 18 LPFKDNISHTKYISFLAHSKGML-----VEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET----D-----IDALA 83 (192)
Q Consensus 18 l~~eeNi~~Tk~vv~~Ah~~gv~-----VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T----g-----vD~LA 83 (192)
.+.++.+++.++.+++|+.++.. ++.|.| .|| ..-|+|+-..++++.- | +|-+-
T Consensus 144 ~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~----~ED--------asRad~dfL~~~~~~a~~~~ga~r~~a~~i~ 211 (333)
T PRK14847 144 MSRAEIKEIALAGTRQIRALADANPGTQWIYEYS----PET--------FSLAELDFAREVCDAVSAIWGPTPQRKMIIN 211 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEe----eec--------CCCCCHHHHHHHHHHHHHHhCCCccCCcEEE
Confidence 36799999999999999998542 233332 233 2358998888887632 4 33333
Q ss_pred E--ecCcCCCCCCCCCCCCCHHHHHHHHhhhcc-CCccEEeecCC--CCCHHHHHHHHhcCCeEee
Q 029526 84 V--CIGNVHGKYPSSGPNLKLDLLKDLHALSSK-KGVLLVLHGAS--GLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 84 v--aiGt~HG~y~~~~p~ld~~~L~~I~~~~~~-~~iPLVlHGgS--G~~~e~~~~~i~~Gi~KIN 144 (192)
+ .+|.. .|.-=.++++.|.+.+.. .++||-+|+=. |+.-..--.|+..|+..|+
T Consensus 212 l~DTVG~~-------~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 212 LPATVESS-------TANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIE 270 (333)
T ss_pred eCCccccC-------CHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 2 34433 243334667777765521 13787777654 6666777889999999987
No 417
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=68.04 E-value=14 Score=33.78 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=60.1
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEE--eecCCCCCHHHHHHHHhcCCeEeecc-----
Q 029526 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV--LHGASGLSAELIKGCIERGVRKFNVN----- 146 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV--lHGgSG~~~e~~~~~i~~Gi~KINi~----- 146 (192)
+++.|+|.+-|++=+. =+-+-+++|++++ ++||| +| .......+++++|+.|+-|+
T Consensus 45 L~~aG~dIVRvtv~~~----------e~A~A~~~Ik~~~---~vPLVaDiH----f~~rla~~~~~~g~~k~RINPGNig 107 (361)
T COG0821 45 LERAGCDIVRVTVPDM----------EAAEALKEIKQRL---NVPLVADIH----FDYRLALEAAECGVDKVRINPGNIG 107 (361)
T ss_pred HHHcCCCEEEEecCCH----------HHHHHHHHHHHhC---CCCEEEEee----ccHHHHHHhhhcCcceEEECCcccC
Confidence 5678999999996222 1445678898888 69999 45 23566778899999998553
Q ss_pred hHHH-HHHHHHhcC---C-----C-----CC-hHHHHHHHHHHHHHHHHHHHHHh
Q 029526 147 TEVR-KAYMDSLSR---P-----K-----SD-LIHLMASAKEAMKAVVAEKMRLF 186 (192)
Q Consensus 147 T~l~-~a~~~~~~~---~-----~-----~~-~~~~~~~~~~~~~~~v~~~i~~~ 186 (192)
..=+ ....++.++ | | ++ ..+|+.+..++|.+...+..++|
T Consensus 108 ~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 108 FKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3321 122222221 1 1 11 23444556688888777776665
No 418
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=67.94 E-value=34 Score=31.87 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCeEEEecc
Q 029526 27 TKYISFLAHSKGMLVEAELG 46 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG 46 (192)
-+.+.+++...++-+-+=+.
T Consensus 119 ~~~~~~~~~~~~~~iGaHvS 138 (413)
T PTZ00372 119 FNKIAELAEKSNVYIGAHVS 138 (413)
T ss_pred HHHHHHHhhccCceEEEEEe
Confidence 35666676766665544443
No 419
>PRK15108 biotin synthase; Provisional
Probab=67.87 E-value=56 Score=29.33 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred hhhcCCCEeEeeCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 3 AIVLGFDSLMVDGS-HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 3 ai~~GFtSVM~D~S-~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+.+.|++.+.+=+| .-|....+....++++.+++.++.+=.-+| +-+++++++ +++.|+|.
T Consensus 88 ~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G-----------------~ls~e~l~~-LkeAGld~ 149 (345)
T PRK15108 88 AKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLG-----------------TLSESQAQR-LANAGLDY 149 (345)
T ss_pred HHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCC-----------------cCCHHHHHH-HHHcCCCE
Confidence 34578888876444 246666777778888888776643221111 233555555 66999999
Q ss_pred EEEecCcCCCCCCCCCCCCCH-HHHHHHHhhhccCCccEEeecCCCC--CHHHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKL-DLLKDLHALSSKKGVLLVLHGASGL--SAELIK 133 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~-~~L~~I~~~~~~~~iPLVlHGgSG~--~~e~~~ 133 (192)
+-+++=|.-+.|+.-.+.=++ ++|+.|+.+- +.++++..|+=-|+ +.+++-
T Consensus 150 ~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~-~~G~~v~sg~i~GlgEt~ed~v 203 (345)
T PRK15108 150 YNHNLDTSPEFYGNIITTRTYQERLDTLEKVR-DAGIKVCSGGIVGLGETVKDRA 203 (345)
T ss_pred EeeccccChHhcCCCCCCCCHHHHHHHHHHHH-HcCCceeeEEEEeCCCCHHHHH
Confidence 999998877888642122344 4677776653 23677776654444 444433
No 420
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.78 E-value=36 Score=28.74 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=52.6
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC-------CCCHH-------
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS-------GLSAE------- 130 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS-------G~~~e------- 130 (192)
.+.+++.+.+++.|.|.+-+.++..|.... ...++.+.+++|++..++.++.++.-..+ +.|++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~ 98 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDESDERLA--RLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQAL 98 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccchh--ccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHH
Confidence 478899999999999999998877665321 13345555667777665556665421111 22322
Q ss_pred -----HHHHHHhcCCeEeecch
Q 029526 131 -----LIKGCIERGVRKFNVNT 147 (192)
Q Consensus 131 -----~~~~~i~~Gi~KINi~T 147 (192)
.++.|..+|+..|++.+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~ 120 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAG 120 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 23556789999999864
No 421
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=67.59 E-value=45 Score=29.75 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=61.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+..|+|+|+...-..|-..+...-++..+.+.......=.-+|.+....+ -.+.++..+.+ ..||-.
T Consensus 40 aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~l~-~~G~~~ 108 (374)
T cd01317 40 AAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLK----------GEELTEIGELL-EAGAVG 108 (374)
T ss_pred HHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCC----------cccHHHHHHHH-HCCcEE
Confidence 5888999999998877787888888888888887654322222344321110 01234555544 346543
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
+. . | . .+.+|...|.++-+..+..+.|+++|.-
T Consensus 109 ~k--~------~-~-~~~~~~~~l~~~~~~~~~~g~~v~~H~E 141 (374)
T cd01317 109 FS--D------D-G-KPIQDAELLRRALEYAAMLDLPIIVHPE 141 (374)
T ss_pred EE--c------C-C-cCCCCHHHHHHHHHHHHhcCCeEEEecC
Confidence 33 1 2 1 2455666666655555556789999984
No 422
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.52 E-value=26 Score=29.60 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=54.5
Q ss_pred hhhcCCCEeEeeCCCCC----HHHH----HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029526 3 AIVLGFDSLMVDGSHLP----FKDN----ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~----~eeN----i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
|-.+|.+-|-+-+...+ .++. +...+++.++|.++||.+--|.. . ....++++++.+++
T Consensus 108 a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~-----~--------~~~~~~~~~~~~ll 174 (283)
T PRK13209 108 AQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM-----D--------TPFMNSISKALGYA 174 (283)
T ss_pred HHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec-----C--------CcccCCHHHHHHHH
Confidence 45667777766554322 2332 55568889999999988777742 1 12467899999999
Q ss_pred hhhCCcEEEEecCcCCCCC
Q 029526 75 DETDIDALAVCIGNVHGKY 93 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~HG~y 93 (192)
++.+-+.|.+.+=+.|-..
T Consensus 175 ~~v~~~~lgl~~D~~h~~~ 193 (283)
T PRK13209 175 HYLNSPWFQLYPDIGNLSA 193 (283)
T ss_pred HHhCCCccceEeccchHHH
Confidence 9998888888877777554
No 423
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=67.49 E-value=20 Score=32.10 Aligned_cols=100 Identities=20% Similarity=0.232 Sum_probs=59.5
Q ss_pred EeEeeCCC-CCHHHHHHHHHHHHHHHHhCCC-eEEEecc--------ccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 10 SLMVDGSH-LPFKDNISHTKYISFLAHSKGM-LVEAELG--------RLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 10 SVM~D~S~-l~~eeNi~~Tk~vv~~Ah~~gv-~VEaElG--------~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
.+|+|+.. +++++-++..+.+ ..+++ .+|.=+- .+-. .-.......+..+|+|++.+++++.-.+
T Consensus 191 ~l~vDan~~~~~~~A~~~~~~l----~~~~l~~iEeP~~~~d~~~~~~l~~-~~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 191 RLMHDGAHWYSRADALRLGRAL----EELGFFWYEDPLREASISSYRWLAE-KLDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred eEEEECCCCcCHHHHHHHHHHh----hhcCCCeEeCCCCchhHHHHHHHHh-cCCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 68999975 6777666555554 34554 6663221 1110 1112222223444559999999999889
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
|.+-+=++..=|.+. ..+|.+.....++|++.|++
T Consensus 266 d~v~~d~~~~GGit~----------~~~ia~~a~~~gi~~~~h~~ 300 (368)
T cd03329 266 DFLRADVNLVGGITG----------AMKTAHLAEAFGLDVELHGN 300 (368)
T ss_pred CEEecCccccCCHHH----------HHHHHHHHHHcCCEEEEECh
Confidence 988876655544432 23444444444899999986
No 424
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=67.47 E-value=30 Score=30.21 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=67.3
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccC-CCHHH----HHHHhhhhCCcEEEEecCc
Q 029526 14 DGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKL-TDVNQ----AEEFIDETDIDALAVCIGN 88 (192)
Q Consensus 14 D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~-T~pee----a~~Fv~~TgvD~LAvaiGt 88 (192)
|.-.++++|.+..++.|++-+.. -.|=+.++.- .| .+|++ +.++++++|++++=+-=
T Consensus 54 Dt~~vtl~em~~h~~~V~r~~~~--p~vvaD~pfg--------------~y~~~~~~av~~a~r~~~~aGa~aVkiEd-- 115 (264)
T PRK00311 54 STLPVTLDDMIYHTKAVARGAPR--ALVVADMPFG--------------SYQASPEQALRNAGRLMKEAGAHAVKLEG-- 115 (264)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCC--CcEEEeCCCC--------------CccCCHHHHHHHHHHHHHHhCCeEEEEcC--
Confidence 44467899999999999876542 1244666431 13 56666 68888889998765531
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee-----------cC---CCCCHHHHHHH-------HhcCCeEe---e
Q 029526 89 VHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH-----------GA---SGLSAELIKGC-------IERGVRKF---N 144 (192)
Q Consensus 89 ~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH-----------Gg---SG~~~e~~~~~-------i~~Gi~KI---N 144 (192)
. -+..+.|+..++ .+||++=| || -|-+++...++ .+.|..=| .
T Consensus 116 ---------g---~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 116 ---------G---EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred ---------c---HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 1 123344555443 27998733 32 13445443333 35666555 3
Q ss_pred cchHHHHHHHHHhc
Q 029526 145 VNTEVRKAYMDSLS 158 (192)
Q Consensus 145 i~T~l~~a~~~~~~ 158 (192)
+.+++....++.+.
T Consensus 183 v~~~~~~~i~~~l~ 196 (264)
T PRK00311 183 VPAELAKEITEALS 196 (264)
T ss_pred CCHHHHHHHHHhCC
Confidence 46677777777664
No 425
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=66.94 E-value=83 Score=27.07 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=67.8
Q ss_pred hhhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHH---HHH
Q 029526 2 EAIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQA---EEF 73 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea---~~F 73 (192)
..++.|.+.|.+=|| .|+.+|=.+..+.+++.+.. .+.|=+=+|. ++.+++ .+.
T Consensus 27 ~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv~~-----------------~s~~~~i~~a~~ 88 (285)
T TIGR00674 27 FQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG-RVPVIAGTGS-----------------NATEEAISLTKF 88 (285)
T ss_pred HHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC-CCeEEEeCCC-----------------ccHHHHHHHHHH
Confidence 457889999998877 56889999888888888753 2443321111 122332 334
Q ss_pred hhhhCCcEEEEecCcCCCCCCCCCCCCCHHHH---HHHHhhhccCCccEEee-----cCCCCCHHHHHHHHhc
Q 029526 74 IDETDIDALAVCIGNVHGKYPSSGPNLKLDLL---KDLHALSSKKGVLLVLH-----GASGLSAELIKGCIER 138 (192)
Q Consensus 74 v~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L---~~I~~~~~~~~iPLVlH-----GgSG~~~e~~~~~i~~ 138 (192)
.++.|+|.+.+.-= .|-. |. +-+++ ++|.+.+ ++|+++. -|..++.+.+++..+.
T Consensus 89 a~~~Gad~v~v~pP----~y~~--~~-~~~i~~~~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 89 AEDVGADGFLVVTP----YYNK--PT-QEGLYQHFKAIAEEV---DLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred HHHcCCCEEEEcCC----cCCC--CC-HHHHHHHHHHHHhcC---CCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 56789998877521 1211 11 22333 4444444 6899987 4667889999988764
No 426
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=66.92 E-value=79 Score=28.86 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=56.7
Q ss_pred hhhhcCCCEeEeeCC-CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCC--CCCccccccccCCCH----HHHHHHh
Q 029526 2 EAIVLGFDSLMVDGS-HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTE--DGLTVEDYEAKLTDV----NQAEEFI 74 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S-~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e--~~~~~~~~~~~~T~p----eea~~Fv 74 (192)
++|+.|.|+|+ |-+ ..|- ......+.+++.+...|+-+-.-.+.+.-.+ .+... .....++ +.+.+++
T Consensus 113 e~l~~G~Ttv~-d~~~~~~~-~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~i 187 (451)
T PRK08203 113 ELLLSGCTTSS-DHHYLFPN-GLRDALDDQIEAAREIGMRFHATRGSMSLGESDGGLPP---DSVVEDEDAILADSQRLI 187 (451)
T ss_pred HHHhcCcCEEE-cceeeccc-cccchHHHHHHHHHHcCCeEEEecceeecCCccCCCCc---cccccCHHHHHHHHHHHH
Confidence 57899999997 432 2221 1112235567777777766543333321000 00000 0112233 3455566
Q ss_pred hhhC----CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 75 DETD----IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 75 ~~Tg----vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
++-. =+.+-+.++ .|+.| ..+.+.|+++.+...+.++|+-+|-.
T Consensus 188 ~~~~~~~~~~~i~~~~~-~~~~~-----~~~~e~l~~~~~~A~~~g~~v~~H~~ 235 (451)
T PRK08203 188 DRYHDPGPGAMLRIALA-PCSPF-----SVSRELMRESAALARRLGVRLHTHLA 235 (451)
T ss_pred HHhcCCCCCCeEEEEEe-cCCCC-----cCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 5421 145555443 24433 34567777777666666788888854
No 427
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=66.76 E-value=51 Score=29.68 Aligned_cols=77 Identities=17% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHH
Q 029526 25 SHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDL 104 (192)
Q Consensus 25 ~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~ 104 (192)
+.-+++.++|+.+|+.+=.+. -| .++.+|+++-|||++=|+=++. -|+++
T Consensus 76 e~~~~L~~~~~~~Gi~~~stp-------------------fd-~~svd~l~~~~v~~~KIaS~~~----------~n~pL 125 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTP-------------------FD-LESADFLEDLGVPRFKIPSGEI----------TNAPL 125 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEe-------------------CC-HHHHHHHHhcCCCEEEECcccc----------cCHHH
Confidence 346788899998887655441 01 4677889999999888874333 37889
Q ss_pred HHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029526 105 LKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 105 L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
|+.+.+. +.|++|==|-. ..+++..|+
T Consensus 126 L~~~A~~----gkPvilStGma-tl~Ei~~Av 152 (329)
T TIGR03569 126 LKKIARF----GKPVILSTGMA-TLEEIEAAV 152 (329)
T ss_pred HHHHHhc----CCcEEEECCCC-CHHHHHHHH
Confidence 9988764 57888865553 566676665
No 428
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.76 E-value=12 Score=34.01 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCH
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~ 102 (192)
.++++.+.|++.+..|=| . ...+.+.++-.++ +.+.-.+ +.+...|..|.+ ..+=.
T Consensus 5 ~~k~lL~~A~~~~yAVgA----f--------------N~~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~g--~~~~~ 63 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPA----F--------------NVNNLEQVQAIMEAADETDSPVI-LQASAGARKYAG--EPFLR 63 (347)
T ss_pred cHHHHHHHHHHcCceEEE----e--------------eeCCHHHHHHHHHHHHHhCCCEE-EECCccHhhhCC--HHHHH
Confidence 467888888887766532 1 1345555555543 4544322 233333555643 11111
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
..++...+.. ..||.+||=-.|.+.|.+++|++.|..-|-|+-.
T Consensus 64 ~~~~~~a~~~--~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS 107 (347)
T PRK09196 64 HLILAAVEEY--PHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGS 107 (347)
T ss_pred HHHHHHHHhC--CCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCC
Confidence 1222232222 1399999999999999999999999999988643
No 429
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.72 E-value=21 Score=34.70 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHHhhhhCCcEEEEecC-cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--cCCCC---------CHHHHHHHH
Q 029526 69 QAEEFIDETDIDALAVCIG-NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--GASGL---------SAELIKGCI 136 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiG-t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--GgSG~---------~~e~~~~~i 136 (192)
...+.+.+.|++.+-+.=| |.+-.|.-- ..=.|++|++|++... +++|.++ |..-+ -..+++++.
T Consensus 30 ~ia~~l~~~G~~~iE~~ggatfd~~~rfl-~edp~e~l~~l~~~~~--~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~ 106 (592)
T PRK09282 30 PIAEKLDKVGFWSLEVWGGATFDVCIRYL-NEDPWERLRKLKKALP--NTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAA 106 (592)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhcccC-CccHHHHHHHHHHhCC--CCEEEEEeccccccccccccchhhHHHHHHHH
Confidence 3445567889999988422 333322110 1124999999998874 5888877 64333 345688999
Q ss_pred hcCCeEeecchHH
Q 029526 137 ERGVRKFNVNTEV 149 (192)
Q Consensus 137 ~~Gi~KINi~T~l 149 (192)
++|+..|++...+
T Consensus 107 ~~Gvd~irif~~l 119 (592)
T PRK09282 107 ENGIDIFRIFDAL 119 (592)
T ss_pred HCCCCEEEEEEec
Confidence 9999999998554
No 430
>PRK06256 biotin synthase; Validated
Probab=66.54 E-value=65 Score=28.24 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred hhhcCCCEeEeeCCCC-CHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 3 AIVLGFDSLMVDGSHL-PFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l-~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+.+.|+..+.+-+|.. |....+....++++..++. ++.+-+.+| +.+++.+++ +++.|+|
T Consensus 103 ~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g-----------------~l~~e~l~~-LkeaG~~ 164 (336)
T PRK06256 103 AIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLG-----------------LLTEEQAER-LKEAGVD 164 (336)
T ss_pred HHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCC-----------------cCCHHHHHH-HHHhCCC
Confidence 4566877666544333 4444555666666666643 333322211 245566655 7788999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHH-HHHHHHhhhccCCccEEeecCC--CCCHHHHHHHH----hcCCeEeec
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLD-LLKDLHALSSKKGVLLVLHGAS--GLSAELIKGCI----ERGVRKFNV 145 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~-~L~~I~~~~~~~~iPLVlHGgS--G~~~e~~~~~i----~~Gi~KINi 145 (192)
.+.+.+=|.--.|+.-.+.-+++ +++.|+.+- +.++++..++=- |-+.+++.+.+ ++|+..|.+
T Consensus 165 ~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~-~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i 235 (336)
T PRK06256 165 RYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVK-AAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI 235 (336)
T ss_pred EEecCCccCHHHHhhcCCCCCHHHHHHHHHHHH-HcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee
Confidence 88876665323343212333443 334444332 235665544333 44556655543 557665554
No 431
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=66.44 E-value=14 Score=33.86 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
|.++|+-|+.|++.. ++|+++-|- ...++.++|++.|+.=|.|+
T Consensus 209 ~~~tW~di~wlr~~~---~~PiivKgV--~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 209 RTLSWKDVQWLQTIT---KLPILVKGV--LTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred CCCCHHHHHHHHhcc---CCCEEeecC--CCHHHHHHHHHcCCCEEEEC
Confidence 789999999999988 699999997 57899999999999988774
No 432
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=66.38 E-value=19 Score=30.95 Aligned_cols=142 Identities=17% Similarity=0.268 Sum_probs=80.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCcc-------ccccccC-C-CHHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTV-------EDYEAKL-T-DVNQAEE 72 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~-------~~~~~~~-T-~peea~~ 72 (192)
++.+.|.+-||+=||.-=-+||+.. +++..+++.++|=-|.|.+.....+... +.....| + ..-++..
T Consensus 27 ~~~~~gtdai~vGGS~~vt~~~~~~---~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~ 103 (232)
T PRK04169 27 AICESGTDAIIVGGSDGVTEENVDE---LVKAIKEYDLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAHVEAAP 103 (232)
T ss_pred HHHhcCCCEEEEcCCCccchHHHHH---HHHHHhcCCCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHHHHHHH
Confidence 4567899999999999444666654 4444555778888888877543221100 0000011 1 1111222
Q ss_pred HhhhhCCcEEE-----------Eec-CcCC--------------------C------CCCCC-CCCCCHHHHHHHHhhhc
Q 029526 73 FIDETDIDALA-----------VCI-GNVH--------------------G------KYPSS-GPNLKLDLLKDLHALSS 113 (192)
Q Consensus 73 Fv~~TgvD~LA-----------vai-Gt~H--------------------G------~y~~~-~p~ld~~~L~~I~~~~~ 113 (192)
.+...+.+.+- ++. ||.- | .|.++ .-..+++.++++++.+
T Consensus 104 ~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~- 182 (232)
T PRK04169 104 IIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKAL- 182 (232)
T ss_pred HHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhc-
Confidence 22333322211 111 2211 1 01111 1235799999999987
Q ss_pred cCCc-cEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 114 KKGV-LLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 114 ~~~i-PLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++ ||..=||- -+.|++++++..|...|-++|.+.
T Consensus 183 --~~~pvivGGGI-rs~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 183 --DITPLIYGGGI-RSPEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred --CCCcEEEECCC-CCHHHHHHHHHhCCCEEEEChHHh
Confidence 56 99884432 344589999999999999999885
No 433
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=66.18 E-value=85 Score=27.67 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=55.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+..|||+|+.=-...|.-.|...-+...+.|.... .+ ..|..++.-.+ .+.+|..+.. +.||..
T Consensus 32 aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~-~~--d~~~~~~~~~~----------~~~~el~~l~-~~Gv~g 97 (337)
T cd01302 32 AAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESS-YV--DFSFHAGIGPG----------DVTDELKKLF-DAGINS 97 (337)
T ss_pred HHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCc-Ee--eEEEEEeccCc----------cCHHHHHHHH-HcCCcE
Confidence 5788899998763334455556666666677766532 11 33333221110 2456666654 468776
Q ss_pred EEEecCcCCCCCCCC-CCCCCHHHHHHHHhhhccCCccEEeecC
Q 029526 82 LAVCIGNVHGKYPSS-GPNLKLDLLKDLHALSSKKGVLLVLHGA 124 (192)
Q Consensus 82 LAvaiGt~HG~y~~~-~p~ld~~~L~~I~~~~~~~~iPLVlHGg 124 (192)
+-+-. .|..+ .+.++-+.|.++-+.....+.|+++|..
T Consensus 98 ~K~f~-----~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E 136 (337)
T cd01302 98 LKVFM-----NYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE 136 (337)
T ss_pred EEEEE-----eccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH
Confidence 65422 12111 1245555555554444434677777765
No 434
>PRK09357 pyrC dihydroorotase; Validated
Probab=66.14 E-value=49 Score=29.86 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=58.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCC-eEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGM-LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv-~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
.|+..|+|+++--....|...+....+++.+.+...+. .+-. .|.+. .+.. . ...++..++.+ .|+
T Consensus 79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~----~---~~~~~~~~l~~-~gv- 145 (423)
T PRK09357 79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLP-VGAIT---KGLA----G---EELTEFGALKE-AGV- 145 (423)
T ss_pred HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEE-EEEEE---eCCC----C---ccHHHHHHHHh-CCc-
Confidence 46788999998666566777777777778888876662 2211 11111 0100 0 12244444443 565
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
++++ .|+.|.. +.+.|+++.+..++.++|+.+|-..
T Consensus 146 ---~~~~-~~~~~~~-----~~~~l~~~~~~a~~~g~~v~iH~ee 181 (423)
T PRK09357 146 ---VAFS-DDGIPVQ-----DARLMRRALEYAKALDLLIAQHCED 181 (423)
T ss_pred ---EEEE-CCCcccC-----CHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 3333 3665542 4566777666665668999999864
No 435
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=66.12 E-value=93 Score=27.35 Aligned_cols=159 Identities=14% Similarity=0.216 Sum_probs=101.4
Q ss_pred hhhhcCCCEeEeeCCCC----------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHH
Q 029526 2 EAIVLGFDSLMVDGSHL----------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAE 71 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l----------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~ 71 (192)
.|+.+|-.-|.+=|+.- ..||-+.+-++|+..|+..+|.|-+=.-.+-|-.-. ---.|+.+.
T Consensus 101 ~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye--------G~v~P~kVa 172 (316)
T KOG2368|consen 101 AAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE--------GAVQPSKVA 172 (316)
T ss_pred HHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc--------CCcCHHHHH
Confidence 46677776666544433 579999999999999999999999877776443221 124566666
Q ss_pred HHhhh-hCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEe-------
Q 029526 72 EFIDE-TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF------- 143 (192)
Q Consensus 72 ~Fv~~-TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KI------- 143 (192)
+-+++ .+--|.-||.|-.-|+= .|..=-+-|+..-+.+.....-.-.|-.-|-.-..+--++++||+-+
T Consensus 173 ~V~k~ly~mGCyEiSLGDTIGvG---Tpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaGL 249 (316)
T KOG2368|consen 173 EVVKKLYEMGCYEISLGDTIGVG---TPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAGL 249 (316)
T ss_pred HHHHHHHhCCcEEEecccccccC---CchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhcccc
Confidence 66655 35567788999888874 34444444555544332111223455566666667777888898764
Q ss_pred -----------ecchHHHHHHHHHhc-CCCCChHHHHHHH
Q 029526 144 -----------NVNTEVRKAYMDSLS-RPKSDLIHLMASA 171 (192)
Q Consensus 144 -----------Ni~T~l~~a~~~~~~-~~~~~~~~~~~~~ 171 (192)
|+.|+=...+.+.+. +...++.++++.+
T Consensus 250 GGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag 289 (316)
T KOG2368|consen 250 GGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAG 289 (316)
T ss_pred CCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence 777777777766664 2233555554433
No 436
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=66.05 E-value=21 Score=33.73 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
++-++.++ +.|+|.+++ -++||. +..-.+.++.|++... ++|+.. |-+...+..+.+++.|+.=|.
T Consensus 227 ~~ra~~Lv-~aGVd~i~~--D~a~g~-----~~~~~~~i~~i~~~~~--~~~vi~--g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 227 GGKAKALL-DAGVDVLVI--DTAHGH-----QVKMISAIKAVRALDL--GVPIVA--GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHH-HhCCCEEEE--eCCCCC-----cHHHHHHHHHHHHHCC--CCeEEE--eccCCHHHHHHHHHhCCCEEE
Confidence 45566655 579998664 678853 4445777888987652 588776 778889999999999998877
No 437
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=66.01 E-value=37 Score=29.57 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=44.9
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK--GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~--gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
+|+++|.+-||+|. +.. ++ ++++++.++.. .+.+|+- || -+|+.+.+|. ++|+
T Consensus 198 ~A~~~gaD~I~ld~--~~p-~~---l~~~~~~~~~~~~~i~i~As----GG--------------I~~~ni~~~~-~~Gv 252 (272)
T cd01573 198 AAAEAGADILQLDK--FSP-EE---LAELVPKLRSLAPPVLLAAA----GG--------------INIENAAAYA-AAGA 252 (272)
T ss_pred HHHHcCCCEEEECC--CCH-HH---HHHHHHHHhccCCCceEEEE----CC--------------CCHHHHHHHH-HcCC
Confidence 57899999999993 322 33 45777766654 4666664 22 2457778875 7999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
|.+ ++|.. |. .+.+||.
T Consensus 253 d~I--~vsai---~~--a~~~D~s 269 (272)
T cd01573 253 DIL--VTSAP---YY--AKPADIK 269 (272)
T ss_pred cEE--EEChh---hc--CcccceE
Confidence 999 44544 22 2556654
No 438
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=65.98 E-value=27 Score=30.92 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHH
Q 029526 28 KYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKD 107 (192)
Q Consensus 28 k~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~ 107 (192)
+.+.+.++.+|..|.-|+ -||.+.+.|.+- +|.|=|.-+|+| ||++|++
T Consensus 99 ~~l~~a~~~~Gl~vvtEv-------------------m~~~~~e~~~~y--~DilqvGARNMQ----------NF~LLke 147 (286)
T COG2876 99 KLLKRAADETGLPVVTEV-------------------MDVRDVEAAAEY--ADILQVGARNMQ----------NFALLKE 147 (286)
T ss_pred HHHHHHHHHcCCeeEEEe-------------------cCHHHHHHHHhh--hhHHHhcccchh----------hhHHHHH
Confidence 344555666666666552 456666666655 688877665553 7999999
Q ss_pred HHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029526 108 LHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 108 I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
.-+. +.|+.|-=|-+-.-|++-.|.+
T Consensus 148 ~G~~----~kPvLLKRg~~aTieEwL~AAE 173 (286)
T COG2876 148 VGRQ----NKPVLLKRGLSATIEEWLNAAE 173 (286)
T ss_pred hccc----CCCeEEecCccccHHHHHHHHH
Confidence 8754 5899999999999888888764
No 439
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=65.90 E-value=77 Score=28.83 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=84.3
Q ss_pred hhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEE
Q 029526 3 AIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDAL 82 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 82 (192)
|-.+|-+-|-.=++-|+-+ .-+++.++||.+|..+=.|+ .|.+|..+-++.-|++.+
T Consensus 199 Ar~~GADAVLLIaaiL~~~----~L~~l~~~A~~LGme~LVEV-------------------H~~~ElerAl~~~ga~iI 255 (338)
T PLN02460 199 ARSKGADAILLIAAVLPDL----DIKYMLKICKSLGMAALIEV-------------------HDEREMDRVLGIEGVELI 255 (338)
T ss_pred HHHcCCCcHHHHHHhCCHH----HHHHHHHHHHHcCCeEEEEe-------------------CCHHHHHHHHhcCCCCEE
Confidence 4456667777777777744 46799999999998776662 344677776643489999
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCcc---EEeecCCCCC-HHHHHHHHhcCCeEeecchHHHH
Q 029526 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL---LVLHGASGLS-AELIKGCIERGVRKFNVNTEVRK 151 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iP---LVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~ 151 (192)
.|..-|.| .-+.|++.-.+|........+| .++=.-||+. .++++++.+.|+.=|=|++.|..
T Consensus 256 GINNRdL~------Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr 322 (338)
T PLN02460 256 GINNRSLE------TFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVK 322 (338)
T ss_pred EEeCCCCC------cceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 99987776 3667888877776621100132 4455667765 47899999999999999998853
No 440
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=65.65 E-value=30 Score=30.05 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|-++||+.|=+.--.+++.+--+ .++++.|+..|..|=.|+|.=....+ .......-.++++++++ -|.|.
T Consensus 92 ~~k~lGf~~IEiSdGti~l~~~~r--~~~I~~~~~~Gf~v~~EvG~K~~~~~-----~~~~~~~~i~~~~~dLe-AGA~~ 163 (244)
T PF02679_consen 92 ECKELGFDAIEISDGTIDLPEEER--LRLIRKAKEEGFKVLSEVGKKDPESD-----FSLDPEELIEQAKRDLE-AGADK 163 (244)
T ss_dssp HHHHCT-SEEEE--SSS---HHHH--HHHHHHHCCTTSEEEEEES-SSHHHH-----TT--CCHHHHHHHHHHH-HTECE
T ss_pred HHHHcCCCEEEecCCceeCCHHHH--HHHHHHHHHCCCEEeecccCCCchhc-----ccCCHHHHHHHHHHHHH-CCCCE
Confidence 477899999998777776655333 37799999999999999993211000 00001222356666664 48888
Q ss_pred EEEe---cCcCCCCCCCCCCCCCHHHHHHHHhhh
Q 029526 82 LAVC---IGNVHGKYPSSGPNLKLDLLKDLHALS 112 (192)
Q Consensus 82 LAva---iGt~HG~y~~~~p~ld~~~L~~I~~~~ 112 (192)
+=+= -|+. |.|.. .-.++.|.+.+|-+.+
T Consensus 164 ViiEarEsG~~-Gi~~~-~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 164 VIIEARESGKG-GIYDN-DGEVRTDLVEKIIERL 195 (244)
T ss_dssp EEE--TTT--S-TTB-T-TS-B-HHHHHHHHTTS
T ss_pred EEEeeeccCCC-CccCC-CCCccHHHHHHHHHhC
Confidence 8662 4788 99987 5889999999998765
No 441
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=65.58 E-value=44 Score=30.36 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
|.+.++.|+.|++.+ ++|+++=|- .+.++.+++.+.|+.=|-+
T Consensus 206 ~~~~~~~l~~lr~~~---~~PvivKgv--~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 206 QKLSPADIEFIAKIS---GLPVIVKGI--QSPEDADVAINAGADGIWV 248 (351)
T ss_pred CCCCHHHHHHHHHHh---CCcEEEecC--CCHHHHHHHHHcCCCEEEE
Confidence 568899999999988 699999984 5778899999999988877
No 442
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.49 E-value=74 Score=28.19 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCC----cccc-----c---------cccCC---------CHHHHHH
Q 029526 20 FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGL----TVED-----Y---------EAKLT---------DVNQAEE 72 (192)
Q Consensus 20 ~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~----~~~~-----~---------~~~~T---------~peea~~ 72 (192)
-++.|..-|++++.+|++|..+=..|.|-|...... .... . -..+| +-.+|.+
T Consensus 77 ~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ 156 (338)
T cd04733 77 SGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAAR 156 (338)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999976432110 0000 0 00122 1123334
Q ss_pred HhhhhCCcEEEEecCc------------CC--CCCCCC---CCCCCHHHHHHHHhhhccCCccEEeecC------CCCCH
Q 029526 73 FIDETDIDALAVCIGN------------VH--GKYPSS---GPNLKLDLLKDLHALSSKKGVLLVLHGA------SGLSA 129 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt------------~H--G~y~~~---~p~ld~~~L~~I~~~~~~~~iPLVlHGg------SG~~~ 129 (192)
.+++.|.|.+=+..|. -| ..|-+. .+.+-.+++++|++.+.. ++||.+-=. -|.+.
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~-d~~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP-GFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHHcCCCCCCH
Confidence 4556899998887663 11 233211 245567888999988842 467765322 24554
Q ss_pred HH----HHHHHhcCCeEeecch
Q 029526 130 EL----IKGCIERGVRKFNVNT 147 (192)
Q Consensus 130 e~----~~~~i~~Gi~KINi~T 147 (192)
++ ++.+-+.|+.-|+|..
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecC
Confidence 43 3445578998888654
No 443
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=65.31 E-value=9.8 Score=32.66 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=40.5
Q ss_pred ecCcCCCCCCCCCCCCCHHHHHHHHhhhc-cCCcc---EEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 85 CIGNVHGKYPSSGPNLKLDLLKDLHALSS-KKGVL---LVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 85 aiGt~HG~y~~~~p~ld~~~L~~I~~~~~-~~~iP---LVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
++++.| .. +++-||..|-++++-+. +.++| +-|- -|.+. ||..||+.|-.-|-|+|.++
T Consensus 172 s~~~s~---ss-~eNpDF~~L~~~r~~ic~~lg~~~dq~eLS--MGMS~-DF~~AIe~Gst~VRvGStIF 234 (244)
T KOG3157|consen 172 SFDNSH---SS-GENPDFQVLVKLRESICKKLGIPADQVELS--MGMSA-DFLLAIEQGSTNVRVGSTIF 234 (244)
T ss_pred cccccc---cC-CCCccHHHHHHHHHHHHHHhCCChHHhhhh--cccch-hHHHHHHhCCceEEeccccc
Confidence 455555 33 47779999988877542 24566 3322 14443 59999999999999999875
No 444
>TIGR03586 PseI pseudaminic acid synthase.
Probab=64.80 E-value=65 Score=28.99 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 24 ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 24 i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
...-+++.++|+++|+.+=.+. -| .+..+|+..-|||++=|+=|+. -|++
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stp-------------------fd-~~svd~l~~~~v~~~KI~S~~~----------~n~~ 125 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSP-------------------FD-ETAVDFLESLDVPAYKIASFEI----------TDLP 125 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEcc-------------------CC-HHHHHHHHHcCCCEEEECCccc----------cCHH
Confidence 3455788899999887665441 12 3455888899999888774433 3788
Q ss_pred HHHHHHhhhccCCccEEeecCCCCCHHHHHHHH
Q 029526 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i 136 (192)
+|+.+.+. +.|+.|==|-. .-+++..|+
T Consensus 126 LL~~va~~----gkPvilstG~~-t~~Ei~~Av 153 (327)
T TIGR03586 126 LIRYVAKT----GKPIIMSTGIA-TLEEIQEAV 153 (327)
T ss_pred HHHHHHhc----CCcEEEECCCC-CHHHHHHHH
Confidence 88888754 57877765553 555666654
No 445
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.70 E-value=44 Score=30.52 Aligned_cols=71 Identities=14% Similarity=0.045 Sum_probs=45.4
Q ss_pred HHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 69 QAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+-.+-+.+.|+|+|.+.-.|.--.|.. +.-++..+.++.+.. ++|++ +|. -.+.++.+++++.|+.=|-++
T Consensus 145 e~a~~l~eaGvd~I~vhgrt~~~~h~~--~~~~~~~i~~~ik~~---~ipVI-aG~-V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 145 ELAPTVVEAGVDLFVIQGTVVSAEHVS--KEGEPLNLKEFIYEL---DVPVI-VGG-CVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccC--CcCCHHHHHHHHHHC---CCCEE-EeC-CCCHHHHHHHHHcCCCEEEEC
Confidence 344446688999999976554333332 111455555555544 69974 455 666788999999998776554
No 446
>PLN02979 glycolate oxidase
Probab=64.66 E-value=16 Score=33.55 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 98 PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 98 p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
|.+.++-|+.|++.. ++|+++=|- ...++.+++++.|+.=|.|+
T Consensus 208 ~~ltW~dl~wlr~~~---~~PvivKgV--~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 208 RTLSWKDVQWLQTIT---KLPILVKGV--LTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCCHHHHHHHHhcc---CCCEEeecC--CCHHHHHHHHhcCCCEEEEC
Confidence 789999999999988 699999997 57899999999999998874
No 447
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=64.58 E-value=75 Score=28.36 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=50.8
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhh-hCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE-TDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~-TgvD 80 (192)
++++.|+|+|+ |-..... ++ ...+.+.+...|+-+=.-.+.+... ......+......+++++|+++ -+-.
T Consensus 98 e~l~~GvTtv~-d~~~~~~-~~---~~~~~~a~~~~G~R~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~i~~~~~~g 169 (401)
T TIGR02967 98 ELLRNGTTTAL-VFATVHP-ES---VDALFEAALKRGMRMIAGKVLMDRN---APDYLRDTAESSYDESKALIERWHGKG 169 (401)
T ss_pred HHHhCCCcEEE-eccccCH-HH---HHHHHHHHHHCCCeEEEeeeeecCC---CCcccccCHHHHHHHHHHHHHHHhCcC
Confidence 57899999998 4433221 12 2355566667776543221221100 0000000111224567777765 2222
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC-CccEEee
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-GVLLVLH 122 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~-~iPLVlH 122 (192)
.+-+.++ .|+.|. ...+.|+++.+...+. +.|+.+|
T Consensus 170 ~i~~~~~-~~~~~~-----~s~e~l~~~~~~A~~~~g~~v~~H 206 (401)
T TIGR02967 170 RLLYAVT-PRFAPT-----SSPEQLAAAGELAKEYPDVYVQTH 206 (401)
T ss_pred CceEEEE-CCcCCc-----CcHHHHHHHHHHHHhCCCCeeEEE
Confidence 3333322 355443 3346677666665554 6676666
No 448
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.48 E-value=27 Score=33.03 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=47.7
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
+.++..+ +.|+|.+++-. +||.-. .-++.+++|++... ++|++. |...+.++.+.++++|+.=|-+
T Consensus 244 ~~~~~l~-~ag~d~i~id~--a~G~s~-----~~~~~i~~ik~~~~--~~~v~a--G~V~t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 244 ERAAALI-EAGVDVLVVDS--SQGNSI-----YQIDMIKKLKSNYP--HVDIIA--GNVVTADQAKNLIDAGADGLRI 309 (495)
T ss_pred HHHHHHH-HCCCCEEEEec--CCCCch-----HHHHHHHHHHhhCC--CceEEE--CCcCCHHHHHHHHHcCCCEEEE
Confidence 3344433 56999998765 576432 13678899988753 577776 7888889999999999887764
No 449
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=64.47 E-value=39 Score=31.42 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=47.9
Q ss_pred CCCHH---HHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCC
Q 029526 64 LTDVN---QAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140 (192)
Q Consensus 64 ~T~pe---ea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi 140 (192)
-++|+ .+..-+ +.|+|.+++-. +||. +.--++.+++|++... ++||++.+. .+.++.+.++++|+
T Consensus 149 g~~~~~~~~v~~lv-~aGvDvI~iD~--a~g~-----~~~~~~~v~~ik~~~p--~~~vi~g~V--~T~e~a~~l~~aGa 216 (404)
T PRK06843 149 SIDIDTIERVEELV-KAHVDILVIDS--AHGH-----STRIIELVKKIKTKYP--NLDLIAGNI--VTKEAALDLISVGA 216 (404)
T ss_pred eCCHHHHHHHHHHH-hcCCCEEEEEC--CCCC-----ChhHHHHHHHHHhhCC--CCcEEEEec--CCHHHHHHHHHcCC
Confidence 35564 455544 58999999754 4432 2234577889988763 578888774 45688999999998
Q ss_pred eEeecc
Q 029526 141 RKFNVN 146 (192)
Q Consensus 141 ~KINi~ 146 (192)
.=|-++
T Consensus 217 D~I~vG 222 (404)
T PRK06843 217 DCLKVG 222 (404)
T ss_pred CEEEEC
Confidence 766544
No 450
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.25 E-value=1e+02 Score=27.24 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCHHHHHHHhhhh---CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-C
Q 029526 65 TDVNQAEEFIDET---DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-V 140 (192)
Q Consensus 65 T~peea~~Fv~~T---gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i 140 (192)
-++++|.+|+++. ++.++ -..-|.-|++-+++|++.+ ++|+.. |-|=....++++.++.| +
T Consensus 182 ~~~~~A~~~~~~l~~~~~~~i-----------EeP~~~~d~~~~~~l~~~~---~~pIa~-gE~~~~~~~~~~~i~~~a~ 246 (341)
T cd03327 182 WNLNYAIKMARALEKYELRWI-----------EEPLIPDDIEGYAELKKAT---GIPIST-GEHEYTVYGFKRLLEGRAV 246 (341)
T ss_pred CCHHHHHHHHHHhhhcCCccc-----------cCCCCccCHHHHHHHHhcC---CCCeEe-ccCccCHHHHHHHHHcCCC
Confidence 4789999998764 33222 1112445888999999887 699887 66766788999999866 5
Q ss_pred eEeecc
Q 029526 141 RKFNVN 146 (192)
Q Consensus 141 ~KINi~ 146 (192)
.-+|+.
T Consensus 247 d~i~~d 252 (341)
T cd03327 247 DILQPD 252 (341)
T ss_pred CEEecC
Confidence 566654
No 451
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=64.15 E-value=39 Score=28.37 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=52.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh--cCCe
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE--RGVR 141 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~--~Gi~ 141 (192)
..||.+..++..+.|+|.|=+.= .-|.. + ...+++.+++|.+. +|+-+=||--. .|++++... .|+.
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivD--Ld~~~-~--~~~n~~~i~~i~~~-----~~v~vgGGirs-~e~~~~~~~~l~~a~ 103 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIAD--LDRIV-G--LGDNFSLLSKLSKR-----VELIADCGVRS-PEDLETLPFTLEFAS 103 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEE--ccccc-C--CcchHHHHHHHHhh-----CcEEEcCccCC-HHHHHHHHhhhccce
Confidence 35998888877788998887751 11211 1 33578999999874 58776665544 445777754 2699
Q ss_pred EeecchHHH
Q 029526 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
|+-++|...
T Consensus 104 rvvigT~a~ 112 (221)
T TIGR00734 104 RVVVATETL 112 (221)
T ss_pred EEeecChhh
Confidence 999999863
No 452
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=64.12 E-value=33 Score=29.79 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred CHHHHHHHhhhhCCcEEEEe--cC-cCCCCCCCCCCCCCHHHHH-HHHhhhccCCccEEee----cCCCCCHHHH----H
Q 029526 66 DVNQAEEFIDETDIDALAVC--IG-NVHGKYPSSGPNLKLDLLK-DLHALSSKKGVLLVLH----GASGLSAELI----K 133 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAva--iG-t~HG~y~~~~p~ld~~~L~-~I~~~~~~~~iPLVlH----GgSG~~~e~~----~ 133 (192)
|.-.| +.+++.|+|+|.+. .+ ++|| |+. .-.+.++.+- .++...+..+.|+|+= |+-+.+.++. .
T Consensus 21 D~~sA-~l~e~aG~d~i~vGds~~~~~lG-~pD-t~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~ 97 (254)
T cd06557 21 DYPTA-KLADEAGVDVILVGDSLGMVVLG-YDS-TLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAA 97 (254)
T ss_pred CHHHH-HHHHHcCCCEEEECHHHHHHHcC-CCC-CCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHH
Confidence 33344 44778999999854 22 3477 654 3556666543 3333333346896652 4444545553 4
Q ss_pred HHHh-cCCeEeec-chHHHHHHHHHh
Q 029526 134 GCIE-RGVRKFNV-NTEVRKAYMDSL 157 (192)
Q Consensus 134 ~~i~-~Gi~KINi-~T~l~~a~~~~~ 157 (192)
+.++ .|+.=||+ +......-.+++
T Consensus 98 r~~~~aGa~aVkiEd~~~~~~~I~al 123 (254)
T cd06557 98 RLMKEAGADAVKLEGGAEVAETIRAL 123 (254)
T ss_pred HHHHHhCCeEEEEcCcHHHHHHHHHH
Confidence 4566 99999999 543333334444
No 453
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=64.04 E-value=12 Score=35.37 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=51.5
Q ss_pred HHHHHHhhhhCCcEEEEecC-cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEE--eecCC--C---CCHH----HHHHH
Q 029526 68 NQAEEFIDETDIDALAVCIG-NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV--LHGAS--G---LSAE----LIKGC 135 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiG-t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV--lHGgS--G---~~~e----~~~~~ 135 (192)
..+.+.+.+.|++++=+.=| |.+-.|.- -..=+|+||+.+++.+. ++||- +-|.. | -||+ -++++
T Consensus 38 l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~--nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a 114 (468)
T PRK12581 38 LPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLP--NTRLQMLLRGQNLLGYRHYADDIVDKFISLS 114 (468)
T ss_pred HHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC--CCceeeeeccccccCccCCcchHHHHHHHHH
Confidence 34556677889999998533 22211221 12235999999999986 45655 44322 1 2333 28889
Q ss_pred HhcCCeEeecchHHH
Q 029526 136 IERGVRKFNVNTEVR 150 (192)
Q Consensus 136 i~~Gi~KINi~T~l~ 150 (192)
+++||.-+=+.+.+.
T Consensus 115 ~~~Gidi~Rifd~ln 129 (468)
T PRK12581 115 AQNGIDVFRIFDALN 129 (468)
T ss_pred HHCCCCEEEEcccCC
Confidence 999999999888764
No 454
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.76 E-value=61 Score=29.20 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
..+.+.+.|||.+=+. |+. ...-+|+.+++|.+... +..++-++ -...++++++.++|+..|++....
T Consensus 28 ia~~L~~~Gv~~IEvG-------~p~-~~~~~~e~i~~i~~~~~--~~~i~~~~--r~~~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 28 IARALDEAGVDELEVG-------IPA-MGEEERAVIRAIVALGL--PARLMAWC--RARDADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHcCCCEEEEe-------CCC-CCHHHHHHHHHHHHcCC--CcEEEEEc--CCCHHHHHHHHcCCcCEEEEEEcc
Confidence 3344667999999986 333 23346888998876642 34455554 235788999999999999998665
Q ss_pred HHH
Q 029526 150 RKA 152 (192)
Q Consensus 150 ~~a 152 (192)
...
T Consensus 96 Sd~ 98 (365)
T TIGR02660 96 SDL 98 (365)
T ss_pred CHH
Confidence 443
No 455
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=63.75 E-value=1.5e+02 Score=29.49 Aligned_cols=118 Identities=23% Similarity=0.217 Sum_probs=88.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|..+|-+.|-+=.+.|+-+ ..++++++|+.+|..+=.|+ .|.+|+.+-+ ..|.+.
T Consensus 128 ea~~~GADavLLI~~~L~~~----~l~~l~~~a~~lGme~LvEv-------------------h~~~el~~a~-~~ga~i 183 (695)
T PRK13802 128 EARAHGADLVLLIVAALDDA----QLKHLLDLAHELGMTVLVET-------------------HTREEIERAI-AAGAKV 183 (695)
T ss_pred HHHHcCCCEeehhHhhcCHH----HHHHHHHHHHHcCCeEEEEe-------------------CCHHHHHHHH-hCCCCE
Confidence 45667888888888888743 67899999999997776662 3446776655 478999
Q ss_pred EEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCC-HHHHHHHHhcCCeEeecchHHHHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLS-AELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~-~e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
+.|..-|.+ .-.+|+++..+|...+.. ++.+| .-||+. .++++++.++|+.=|=|+|.|..+
T Consensus 184 iGINnRdL~------tf~vd~~~t~~L~~~ip~-~~~~V--sESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 184 IGINARNLK------DLKVDVNKYNELAADLPD-DVIKV--AESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred EEEeCCCCc------cceeCHHHHHHHHhhCCC-CcEEE--EcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 999877775 356788888888877632 33334 556765 578999999999999999988654
No 456
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=63.61 E-value=29 Score=30.35 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=47.9
Q ss_pred CHHHH-HHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 66 DVNQA-EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 66 ~peea-~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
+.+++ +.-+++.+.|++-++ |.. .+ ..-|.+.|+.+++.+ ++|.. =|||+..+.+....+. ..=+=
T Consensus 164 ~~~~~v~dtver~~aDaVI~t-G~~----TG--~~~d~~el~~a~~~~---~~pvl--vGSGv~~eN~~~~l~~-adG~I 230 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVT-GSR----TG--SPPDLEELKLAKEAV---DTPVL--VGSGVNPENIEELLKI-ADGVI 230 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEe-ccc----CC--CCCCHHHHHHHHhcc---CCCEE--EecCCCHHHHHHHHHH-cCceE
Confidence 44554 444888889988776 322 22 234788888888776 46644 4899999988887665 44455
Q ss_pred cchHHH
Q 029526 145 VNTEVR 150 (192)
Q Consensus 145 i~T~l~ 150 (192)
++|.++
T Consensus 231 vgT~lK 236 (263)
T COG0434 231 VGTSLK 236 (263)
T ss_pred EEEEEc
Confidence 666664
No 457
>PRK00509 argininosuccinate synthase; Provisional
Probab=63.49 E-value=19 Score=33.36 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCCCCCCC----CCCCCHHHHHHHHhhhccCCccEEeecCCC--CCHHHHHHHHhcCCeEeecchHHHHH
Q 029526 89 VHGKYPSS----GPNLKLDLLKDLHALSSKKGVLLVLHGASG--LSAELIKGCIERGVRKFNVNTEVRKA 152 (192)
Q Consensus 89 ~HG~y~~~----~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG--~~~e~~~~~i~~Gi~KINi~T~l~~a 152 (192)
.+|.|+-. .|.| |..|.++.+.. +.+.|.||.+| .+.-.|+..++.=--...|-++++..
T Consensus 82 y~g~ypl~~~lcr~~i-~~~l~~~A~~~---G~~~IA~G~t~kGnDq~rf~~g~~al~pel~VisPlre~ 147 (399)
T PRK00509 82 YEGKYPLGTALARPLI-AKKLVEIARKE---GADAVAHGCTGKGNDQVRFELGIAALAPDLKVIAPWREW 147 (399)
T ss_pred hcCcCCCchHHHHHHH-HHHHHHHHHHc---CCCEEEeCCCcCCCCHHHHHHHHHHhCCCCeeecchhhc
Confidence 47888632 3456 77777776655 79999999999 66666766655433355677777754
No 458
>PRK08508 biotin synthase; Provisional
Probab=63.28 E-value=68 Score=27.71 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=61.1
Q ss_pred hhhcCCCEeEe-eCCCCCHHHHHHHHHHHHHHHHhCC--CeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCC
Q 029526 3 AIVLGFDSLMV-DGSHLPFKDNISHTKYISFLAHSKG--MLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDI 79 (192)
Q Consensus 3 ai~~GFtSVM~-D~S~l~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~Tgv 79 (192)
|.+.|++.+.+ ++-.-+-+..+....++++..++.+ +.+-+-.| +.++|+.++ +++.|+
T Consensus 52 a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G-----------------~~~~e~l~~-Lk~aGl 113 (279)
T PRK08508 52 AKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNG-----------------TASVEQLKE-LKKAGI 113 (279)
T ss_pred HHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCC-----------------CCCHHHHHH-HHHcCC
Confidence 34467777754 3222222445666677777777543 33333222 234555555 679999
Q ss_pred cEEEEecCcCCCCCCCCCCCCCHH-HHHHHHhhhccCCccE---EeecCCCCCHHHHHHH
Q 029526 80 DALAVCIGNVHGKYPSSGPNLKLD-LLKDLHALSSKKGVLL---VLHGASGLSAELIKGC 135 (192)
Q Consensus 80 D~LAvaiGt~HG~y~~~~p~ld~~-~L~~I~~~~~~~~iPL---VlHGgSG~~~e~~~~~ 135 (192)
|.+-..+-|.--.|+...+.-+|+ +++.|+.+ ++.+++. .|-|= |=+.+++...
T Consensus 114 d~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a-~~~Gi~v~sg~I~Gl-GEt~ed~~~~ 171 (279)
T PRK08508 114 FSYNHNLETSKEFFPKICTTHTWEERFQTCENA-KEAGLGLCSGGIFGL-GESWEDRISF 171 (279)
T ss_pred CEEcccccchHHHhcCCCCCCCHHHHHHHHHHH-HHcCCeecceeEEec-CCCHHHHHHH
Confidence 999999888876776432334444 34444333 2224443 45553 5555655543
No 459
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=63.17 E-value=67 Score=28.99 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHH
Q 029526 70 AEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l 149 (192)
..+.+.+.|||.+-+. ++. .++=+++.++.|.+... ...++.|.- .-.+++++++++|+..|++.-..
T Consensus 27 ia~~L~~~Gv~~IEvG-------~p~-~~~~~~e~i~~i~~~~~--~~~v~~~~r--~~~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 27 IARKLDELGVDVIEAG-------FPI-ASEGEFEAIKKISQEGL--NAEICSLAR--ALKKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred HHHHHHHcCCCEEEEe-------CCC-CChHHHHHHHHHHhcCC--CcEEEEEcc--cCHHHHHHHHHcCcCEEEEEEcC
Confidence 3444678999999974 232 24456888888887642 466776663 44677999999999999995443
No 460
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=63.12 E-value=38 Score=31.60 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=52.3
Q ss_pred CHHHHHHHhhhhC-CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccC--------CccEEeecCCCCCHHHHHHHH
Q 029526 66 DVNQAEEFIDETD-IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK--------GVLLVLHGASGLSAELIKGCI 136 (192)
Q Consensus 66 ~peea~~Fv~~Tg-vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~--------~iPLVlHGgSG~~~e~~~~~i 136 (192)
+++||+. .++.| +|.+.+. .-+=| -.+..| -+.+|..|.+..+.. +||++.=||-|.|.. +..+.
T Consensus 165 t~~eA~~-A~~~g~aD~Ivvq-~EAGG-H~g~~~--~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~-vaAA~ 238 (418)
T cd04742 165 TEEQAEL-ARRVPVADDITVE-ADSGG-HTDNRP--LSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEA-AAAAF 238 (418)
T ss_pred CHHHHHH-HHhCCCCCEEEEc-ccCCC-CCCCcc--HHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHH-HHHHH
Confidence 3444432 44556 5998887 33322 222122 346666665533211 599999999998765 99999
Q ss_pred hcCCeEeecchHHHH
Q 029526 137 ERGVRKFNVNTEVRK 151 (192)
Q Consensus 137 ~~Gi~KINi~T~l~~ 151 (192)
.+|-.=|-++|-++.
T Consensus 239 alGAd~V~~GT~fla 253 (418)
T cd04742 239 ALGADFIVTGSINQC 253 (418)
T ss_pred HcCCcEEeeccHHHh
Confidence 999999999998864
No 461
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=63.01 E-value=33 Score=29.94 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=46.3
Q ss_pred CHHHHHHHhhhhCCcEEEEe--cC-cCCCCCCCCCCCCCHHHHH-HHHhhhccCCccEEee----cCCCCCHHH-H---H
Q 029526 66 DVNQAEEFIDETDIDALAVC--IG-NVHGKYPSSGPNLKLDLLK-DLHALSSKKGVLLVLH----GASGLSAEL-I---K 133 (192)
Q Consensus 66 ~peea~~Fv~~TgvD~LAva--iG-t~HG~y~~~~p~ld~~~L~-~I~~~~~~~~iPLVlH----GgSG~~~e~-~---~ 133 (192)
|.-.| +.+++.|+|+|.+. .+ ++|| |+. .-.+.++.+- .++...+..+.|+|+= |+-+.+.++ + .
T Consensus 24 D~~sA-rl~e~aG~d~i~vGds~~~~~lG-~~D-t~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~ 100 (264)
T PRK00311 24 DYPFA-KLFDEAGVDVILVGDSLGMVVLG-YDS-TLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAG 100 (264)
T ss_pred CHHHH-HHHHHcCCCEEEECHHHHHHHcC-CCC-CCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHH
Confidence 33334 45789999999863 22 4577 664 3556666553 2333333335775553 444455555 3 4
Q ss_pred HHHh-cCCeEeec-ch
Q 029526 134 GCIE-RGVRKFNV-NT 147 (192)
Q Consensus 134 ~~i~-~Gi~KINi-~T 147 (192)
+.++ .|+.=||+ +.
T Consensus 101 r~~~~aGa~aVkiEdg 116 (264)
T PRK00311 101 RLMKEAGAHAVKLEGG 116 (264)
T ss_pred HHHHHhCCeEEEEcCc
Confidence 4556 99999999 44
No 462
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=62.91 E-value=1.5e+02 Score=28.72 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=81.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecccccc-CCCCCccccccccCCCH---HHHHHHhhhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSG-TEDGLTVEDYEAKLTDV---NQAEEFIDET 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g-~e~~~~~~~~~~~~T~p---eea~~Fv~~T 77 (192)
+|.+.|-..||| |+=......++++++++.+.- ++..-+. .++.. ....+.-+| ..+.+|++
T Consensus 378 ra~~~G~~~Im~-----PmV~t~eE~~~~~~~~~~~~~----~l~~~~~~~~~~~---~vg~mIEtpaav~~~d~ia~-- 443 (565)
T TIGR01417 378 RASAYGKLRIMF-----PMVATVEEIRAVKQELEEEKQ----ELNDEGKAFDENI---EVGVMIEIPSAALIADHLAK-- 443 (565)
T ss_pred HHHhcCCCeEEe-----cCCCCHHHHHHHHHHHHHHHH----HHHHhccccccCc---EEEEEEcCHHHHHhHHHHHh--
Confidence 678889999997 554444444444444443211 1110000 00000 012233444 34556665
Q ss_pred CCcEEEEecCcCC-CCC----------CC-CCCCCCHHHHHHHHhh---hccCCccEEeecCCCCCHHHHHHHHhcCCeE
Q 029526 78 DIDALAVCIGNVH-GKY----------PS-SGPNLKLDLLKDLHAL---SSKKGVLLVLHGASGLSAELIKGCIERGVRK 142 (192)
Q Consensus 78 gvD~LAvaiGt~H-G~y----------~~-~~p~ld~~~L~~I~~~---~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~K 142 (192)
+||++. |||.= -+| -+ .....+...++.|+.. .+..++|+.+=|.-..+++.+...+..|+..
T Consensus 444 ~vDf~s--IGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~ 521 (565)
T TIGR01417 444 EVDFFS--IGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRE 521 (565)
T ss_pred hCCEEE--EChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCE
Confidence 899765 45421 111 00 0123466666666554 3335799998776666678999999999999
Q ss_pred eecchHHHHHHHHHhcC
Q 029526 143 FNVNTEVRKAYMDSLSR 159 (192)
Q Consensus 143 INi~T~l~~a~~~~~~~ 159 (192)
+.++....-.....++.
T Consensus 522 lsv~~~~i~~~k~~i~~ 538 (565)
T TIGR01417 522 LSMSASSILRIKMIIRK 538 (565)
T ss_pred EEEChHhHHHHHHHHHh
Confidence 99999988887777765
No 463
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=62.90 E-value=84 Score=28.14 Aligned_cols=125 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeccccccCCC--CCc--ccc--------ccccCCCHHHHHHH----------hhhh
Q 029526 20 FKDNISHTKYISFLAHSKGMLVEAELGRLSGTED--GLT--VED--------YEAKLTDVNQAEEF----------IDET 77 (192)
Q Consensus 20 ~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~--~~~--~~~--------~~~~~T~peea~~F----------v~~T 77 (192)
-++.|..-|++++.+|++|..+=..|-|-|.... +.. ... ....+| .+|.++. +.+-
T Consensus 76 ~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt-~eeI~~ii~~f~~aA~~a~~a 154 (337)
T PRK13523 76 DDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMT-KEQIKETVLAFKQAAVRAKEA 154 (337)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCC-HHHHHHHHHHHHHHHHHHHHc
Confidence 5788999999999999999999999988764321 000 000 001122 3444333 3457
Q ss_pred CCcEEEEecCc---------C---C--CCCCCC---CCCCCHHHHHHHHhhhccCCccEEee------cCCCCCHHHH--
Q 029526 78 DIDALAVCIGN---------V---H--GKYPSS---GPNLKLDLLKDLHALSSKKGVLLVLH------GASGLSAELI-- 132 (192)
Q Consensus 78 gvD~LAvaiGt---------~---H--G~y~~~---~p~ld~~~L~~I~~~~~~~~iPLVlH------GgSG~~~e~~-- 132 (192)
|.|.+=+..|. - | ..|-+. ...+=.+.|++|++.+ +.|+.+- .-.|++.++.
T Consensus 155 GfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~~~v~vRis~~d~~~~G~~~~e~~~ 231 (337)
T PRK13523 155 GFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---DGPLFVRISASDYHPGGLTVQDYVQ 231 (337)
T ss_pred CCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---CCCeEEEecccccCCCCCCHHHHHH
Confidence 99998887652 1 1 112211 1223346778888876 4566551 1126666554
Q ss_pred --HHHHhcCCeEeecchH
Q 029526 133 --KGCIERGVRKFNVNTE 148 (192)
Q Consensus 133 --~~~i~~Gi~KINi~T~ 148 (192)
+.+-+.|+.=|+|...
T Consensus 232 i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 232 YAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred HHHHHHHcCCCEEEeCCC
Confidence 3445679999988654
No 464
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=62.86 E-value=14 Score=33.15 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh---hhhCCcE-EEEecCcCCCCCCCCCCCCCH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI---DETDIDA-LAVCIGNVHGKYPSSGPNLKL 102 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~-LAvaiGt~HG~y~~~~p~ld~ 102 (192)
++++.+.|++.+..|= .. ...+.|.++..+ ++.+... |.++-| |-.|.+ ..+=.
T Consensus 5 ~k~lL~~A~~~~yaV~----Af--------------N~~n~e~~~avi~AAe~~~sPvIlq~s~~--~~~~~g--~~~~~ 62 (307)
T PRK05835 5 GNEILLKAHKEGYGVG----AF--------------NFVNFEMLNAIFEAGNEENSPLFIQASEG--AIKYMG--IDMAV 62 (307)
T ss_pred HHHHHHHHHHCCceEE----EE--------------EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhCC--hHHHH
Confidence 5777788887766542 22 124455555554 3455433 333333 323432 22212
Q ss_pred HHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 103 DLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 103 ~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
..++.+.+..+ .||.+||=-.|.+.|.+++|++.|.+-|-++
T Consensus 63 ~~~~~~a~~~~--~VPValHLDHg~~~e~i~~ai~~GftSVM~D 104 (307)
T PRK05835 63 GMVKIMCERYP--HIPVALHLDHGTTFESCEKAVKAGFTSVMID 104 (307)
T ss_pred HHHHHHHHhcC--CCeEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 23344444331 3999999999999999999999999988875
No 465
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=62.83 E-value=1.1e+02 Score=27.22 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=67.4
Q ss_pred cCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh---CCcEE
Q 029526 6 LGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET---DIDAL 82 (192)
Q Consensus 6 ~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T---gvD~L 82 (192)
.||+.+=+--...++++.+++.+.+.+.... ++.+=. | .+.--++++|.+|+++. ++.++
T Consensus 156 ~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~-~~~l~~---------D-------aN~~~~~~~A~~~~~~l~~~~~~~i 218 (368)
T TIGR02534 156 KRHRSFKLKIGARDPADDVAHVVAIAKALGD-RASVRV---------D-------VNAAWDERTALHYLPQLADAGVELI 218 (368)
T ss_pred cCcceEEEEeCCCCcHHHHHHHHHHHHhcCC-CcEEEE---------E-------CCCCCCHHHHHHHHHHHHhcChhhe
Confidence 5787776655455566667666666554322 111100 1 11224778999998664 33322
Q ss_pred EEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC-CeEeecchHH
Q 029526 83 AVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG-VRKFNVNTEV 149 (192)
Q Consensus 83 AvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G-i~KINi~T~l 149 (192)
-..-|.-|++.+++|++.+ ++|++++ -|=....+++++++.| +.-+|+....
T Consensus 219 -----------EeP~~~~d~~~~~~l~~~~---~~pia~d-E~~~~~~~~~~~~~~~~~d~~~~d~~~ 271 (368)
T TIGR02534 219 -----------EQPTPAENREALARLTRRF---NVPIMAD-ESVTGPADALAIAKASAADVFALKTTK 271 (368)
T ss_pred -----------ECCCCcccHHHHHHHHHhC---CCCEEeC-cccCCHHHHHHHHHhCCCCEEEEcccc
Confidence 1112445788899998877 6999984 4556667788888765 7777874443
No 466
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=62.81 E-value=61 Score=27.22 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=83.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHh-CCCeEEEeccccccCCCCC-------------------------
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHS-KGMLVEAELGRLSGTEDGL------------------------- 55 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i~g~e~~~------------------------- 55 (192)
++.+.|.+-+|+=||.-=.++|+..+ ++..++ .+++|=-|.|.......+.
T Consensus 19 ~v~~~gtDaI~VGGS~gvt~~~~~~~---v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~sllns~~~~~i~g~~~~~~ 95 (205)
T TIGR01769 19 NAKDAGTDAIMVGGSLGIVESNLDQT---VKKIKKITNLPVILFPGNVNGLSRYADAVFFMSLLNSADTYFIVGAQILGA 95 (205)
T ss_pred HHHhcCCCEEEEcCcCCCCHHHHHHH---HHHHHhhcCCCEEEECCCccccCcCCCEEEEEEeecCCCcchhhhHHHHHH
Confidence 45678999999999963455666544 444444 5677777777654211000
Q ss_pred ----------------------ccc--cccc--cCCCHHHHHHHhhh---hCCcEEEEecCcCCCCCCCCCCCCCHHHHH
Q 029526 56 ----------------------TVE--DYEA--KLTDVNQAEEFIDE---TDIDALAVCIGNVHGKYPSSGPNLKLDLLK 106 (192)
Q Consensus 56 ----------------------~~~--~~~~--~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~ 106 (192)
... .... ..-+||++..|... .|.+++=+--|+ |.+ -..+.+.++
T Consensus 96 ~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~s--Ga~----~~v~~e~i~ 169 (205)
T TIGR01769 96 ITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGS--GAS----YPVNPETIS 169 (205)
T ss_pred HHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCC--CCC----CCCCHHHHH
Confidence 000 0000 12488999888644 577776663321 111 225799999
Q ss_pred HHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 107 DLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 107 ~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
+|++.+ ++|++.=||-- +.|+.+++++.|...|-++
T Consensus 170 ~Vk~~~---~~Pv~vGGGIr-s~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 170 LVKKAS---GIPLIVGGGIR-SPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHhh---CCCEEEeCCCC-CHHHHHHHHHcCCCEEEeC
Confidence 999988 69999988654 5577899989998887654
No 467
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=62.79 E-value=29 Score=32.61 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=48.1
Q ss_pred HHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 68 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
.++.+-+-+.|+|.|+ +=+.||.-. -=++.++.|++... ++|+++ |.+.+.++.+.+++.|+.=|.+
T Consensus 230 ~e~a~~L~~agvdviv--vD~a~g~~~-----~vl~~i~~i~~~~p--~~~vi~--g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLV--VDTAHGHSE-----GVLDRVREIKAKYP--DVQIIA--GNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEE--EECCCCcch-----hHHHHHHHHHhhCC--CCCEEE--eccCCHHHHHHHHHcCCCEEEE
Confidence 3455556678999875 445576532 13456777776552 589888 8899999999999999888765
No 468
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.67 E-value=60 Score=27.66 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHhhhhCCcEEEEecCcC------CCCCCCCCCCCCHHHHHHHHhhhccCCccEE---eecCCCCCHHHHHHHHhcCCe
Q 029526 71 EEFIDETDIDALAVCIGNV------HGKYPSSGPNLKLDLLKDLHALSSKKGVLLV---LHGASGLSAELIKGCIERGVR 141 (192)
Q Consensus 71 ~~Fv~~TgvD~LAvaiGt~------HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLV---lHGgSG~~~e~~~~~i~~Gi~ 141 (192)
.+.+.+.|||.+-+..++- +-.|+. .=++++++.+++..+ +..++ .||-. ..+++.++.++|+.
T Consensus 28 ~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~--~~~~~~~~~~~~~--~~~~i~~a~~~g~~ 100 (263)
T cd07943 28 ARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALK--QAKLGVLLLPGIG--TVDDLKMAADLGVD 100 (263)
T ss_pred HHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhcc--CCEEEEEecCCcc--CHHHHHHHHHcCCC
Confidence 3446678999999886521 111221 226888899877654 34443 33322 25789999999999
Q ss_pred EeecchHHH
Q 029526 142 KFNVNTEVR 150 (192)
Q Consensus 142 KINi~T~l~ 150 (192)
.|++.+...
T Consensus 101 ~iri~~~~s 109 (263)
T cd07943 101 VVRVATHCT 109 (263)
T ss_pred EEEEEechh
Confidence 999986654
No 469
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=62.64 E-value=16 Score=31.84 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC---CHHHHHHHHhcCCeEe
Q 029526 72 EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL---SAELIKGCIERGVRKF 143 (192)
Q Consensus 72 ~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~---~~e~~~~~i~~Gi~KI 143 (192)
+.+++-|+|-+.+. ...+ ...||.++++++-+... +.|+++|=+--. |.+-+...+++|+..|
T Consensus 80 ~~~~~~GadGvV~G------~L~~-dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rI 145 (248)
T PRK11572 80 ATVRELGFPGLVTG------VLDV-DGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARI 145 (248)
T ss_pred HHHHHcCCCEEEEe------eECC-CCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEE
Confidence 33456799955543 3444 36799999999998885 799999977655 4445666777777655
No 470
>PRK07475 hypothetical protein; Provisional
Probab=62.52 E-value=9.1 Score=32.67 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=39.7
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhc--CC
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIER--GV 140 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~--Gi 140 (192)
.+-...++.+.++..|+|+++.+.||.|=.| ++|++.+ +||+. | .+..++..+-+. +.
T Consensus 63 ~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~------------~~l~~~~---~VPv~-~----ss~~~v~~l~~~~~~~ 122 (245)
T PRK07475 63 LLDAFVAAARELEAEGVRAITTSCGFLALFQ------------RELAAAL---GVPVA-T----SSLLQVPLIQALLPAG 122 (245)
T ss_pred HHHHHHHHHHHHHHcCCCEEEechHHHHHHH------------HHHHHHc---CCCEe-c----cHHHHHHHHHHhccCC
Confidence 3444467777788899999999999998543 3455555 57755 2 444444443333 35
Q ss_pred eEeec
Q 029526 141 RKFNV 145 (192)
Q Consensus 141 ~KINi 145 (192)
.||=+
T Consensus 123 ~kIGI 127 (245)
T PRK07475 123 QKVGI 127 (245)
T ss_pred CeEEE
Confidence 56554
No 471
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=62.22 E-value=1.2e+02 Score=27.13 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=48.8
Q ss_pred CCHHHHHHHhhhh---CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhh--hccCCccEEeecCCCCCHHHHHHHHhcC
Q 029526 65 TDVNQAEEFIDET---DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHAL--SSKKGVLLVLHGASGLSAELIKGCIERG 139 (192)
Q Consensus 65 T~peea~~Fv~~T---gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~--~~~~~iPLVlHGgSG~~~e~~~~~i~~G 139 (192)
-++++|.+|+++. ++.++ -..-|.-|++-++++++. + ++|+.. |=|=.+..++++.++.|
T Consensus 193 ~~~~~A~~~~~~l~~~~~~~~-----------EeP~~~~d~~~~~~l~~~~~~---~iPIa~-gE~~~~~~~~~~li~~~ 257 (352)
T cd03328 193 YSRKQALALARAFADEGVTWF-----------EEPVSSDDLAGLRLVRERGPA---GMDIAA-GEYAYTLAYFRRLLEAH 257 (352)
T ss_pred CCHHHHHHHHHHHHHhCcchh-----------hCCCChhhHHHHHHHHhhCCC---CCCEEe-cccccCHHHHHHHHHcC
Confidence 3688999998765 33222 111234588899999988 6 699887 77877899999999987
Q ss_pred -CeEeecch
Q 029526 140 -VRKFNVNT 147 (192)
Q Consensus 140 -i~KINi~T 147 (192)
+.-+|+.-
T Consensus 258 a~div~~d~ 266 (352)
T cd03328 258 AVDVLQADV 266 (352)
T ss_pred CCCEEecCc
Confidence 56666653
No 472
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.22 E-value=62 Score=27.16 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=52.2
Q ss_pred hhhcCCCEeEeeCCCC--------CHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHh
Q 029526 3 AIVLGFDSLMVDGSHL--------PFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFI 74 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l--------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv 74 (192)
|-.+|.+.|.+-+... .+++-++..++++++|.+.||.+--|.- + .....+++++.+|+
T Consensus 103 a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~--~-----------~~~~~~~~~~~~l~ 169 (284)
T PRK13210 103 AQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM--D-----------TPFMNSISKWKKWD 169 (284)
T ss_pred HHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec--C-----------ccccCCHHHHHHHH
Confidence 4466777777643321 2455566778899999999988777641 0 11457899999999
Q ss_pred hhhCCcEEEEecCcCC
Q 029526 75 DETDIDALAVCIGNVH 90 (192)
Q Consensus 75 ~~TgvD~LAvaiGt~H 90 (192)
+.++-+.+.+.+-+.|
T Consensus 170 ~~v~~~~~~~~~D~~h 185 (284)
T PRK13210 170 KEIDSPWLTVYPDVGN 185 (284)
T ss_pred HHcCCCceeEEecCCh
Confidence 9998888877665544
No 473
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.20 E-value=22 Score=31.72 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhhhcCCC---EeEeeCCC-CCHHHHHHHHHHHHHHHHhCCC-eEE--------EeccccccCCCCCccccccccCCCHH
Q 029526 2 EAIVLGFD---SLMVDGSH-LPFKDNISHTKYISFLAHSKGM-LVE--------AELGRLSGTEDGLTVEDYEAKLTDVN 68 (192)
Q Consensus 2 ~ai~~GFt---SVM~D~S~-l~~eeNi~~Tk~vv~~Ah~~gv-~VE--------aElG~i~g~e~~~~~~~~~~~~T~pe 68 (192)
++++..|. .+|+|+.. +++++ ..++.+....+++ .+| ..+..+ -..-.......| ..++++
T Consensus 167 ~avr~~~g~~~~l~vDaN~~~~~~~----A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L-~~~~~~pia~dE-s~~~~~ 240 (352)
T cd03325 167 AALREAVGPDIDIGVDFHGRVSKPM----AKDLAKELEPYRLLFIEEPVLPENVEALAEI-AARTTIPIATGE-RLFSRW 240 (352)
T ss_pred HHHHHhhCCCCEEEEECCCCCCHHH----HHHHHHhccccCCcEEECCCCccCHHHHHHH-HHhCCCCEEecc-cccCHH
Q ss_pred HHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeec-CCCC
Q 029526 69 QAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG-ASGL 127 (192)
Q Consensus 69 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHG-gSG~ 127 (192)
+..++++.-.+|.+-+-++-.=|.... .++.+.....++|++.|+ .|++
T Consensus 241 ~~~~~~~~~~~d~v~~d~~~~GGit~~----------~~~~~lA~~~gi~~~~h~~~s~i 290 (352)
T cd03325 241 DFKELLEDGAVDIIQPDISHAGGITEL----------KKIAAMAEAYDVALAPHCPLGPI 290 (352)
T ss_pred HHHHHHHhCCCCEEecCccccCCHHHH----------HHHHHHHHHcCCcEeccCCCChH
No 474
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.15 E-value=24 Score=32.59 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhhcCC---CEeEeeCCC-CCHHHHHHHHHHHHHHHHhCCC-eEE--------EeccccccCCC--CCccccccccCCC
Q 029526 2 EAIVLGF---DSLMVDGSH-LPFKDNISHTKYISFLAHSKGM-LVE--------AELGRLSGTED--GLTVEDYEAKLTD 66 (192)
Q Consensus 2 ~ai~~GF---tSVM~D~S~-l~~eeNi~~Tk~vv~~Ah~~gv-~VE--------aElG~i~g~e~--~~~~~~~~~~~T~ 66 (192)
++++..+ -.+|+|+.. ++.++ +.++.+....+++ .+| ..+-.+...-+ +......| ...+
T Consensus 231 ~avRe~vG~~~~L~vDaN~~w~~~~----A~~~~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gE-s~~~ 305 (415)
T cd03324 231 RLAREVIGPDNKLMIDANQRWDVPE----AIEWVKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGE-HCQN 305 (415)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHH----HHHHHHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCC-ccCC
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL 127 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~ 127 (192)
+.+.+++++.-.+|.+-+=+...=|.... .+|.+.....++|++.|+ ||+
T Consensus 306 ~~~~~~ll~~~a~dil~~d~~~~GGit~~----------~kia~lA~a~gi~~~pH~-s~~ 355 (415)
T cd03324 306 RVVFKQLLQAGAIDVVQIDSCRLGGVNEN----------LAVLLMAAKFGVPVCPHA-GGV 355 (415)
T ss_pred HHHHHHHHHcCCCCEEEeCccccCCHHHH----------HHHHHHHHHcCCeEEEcC-CHH
No 475
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=62.02 E-value=43 Score=27.78 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCC----CHH---------
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL----SAE--------- 130 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~----~~e--------- 130 (192)
..++++..+.+++.|.|.+.+.- ++.+.. +.+.++++++..+..++.++.|+.... |++
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~---~~~~~~-----~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~ 85 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP---GDLFPA-----DYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEE 85 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC---cccCCc-----hhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHH
Confidence 46778899999999988887765 333322 222245555554444788888776654 232
Q ss_pred ---HHHHHHhcCCeEeecchHH
Q 029526 131 ---LIKGCIERGVRKFNVNTEV 149 (192)
Q Consensus 131 ---~~~~~i~~Gi~KINi~T~l 149 (192)
-+.-|.++|+..+++.+..
T Consensus 86 ~~~~i~~a~~lg~~~vv~~~g~ 107 (274)
T COG1082 86 LKRAIELAKELGAKVVVVHPGL 107 (274)
T ss_pred HHHHHHHHHHcCCCeEEeeccc
Confidence 2444778888888876654
No 476
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=61.98 E-value=58 Score=29.58 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccC-CCHHH----HHHHhhhhCCcEEEEecCcC
Q 029526 15 GSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKL-TDVNQ----AEEFIDETDIDALAVCIGNV 89 (192)
Q Consensus 15 ~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~-T~pee----a~~Fv~~TgvD~LAvaiGt~ 89 (192)
+-..++++=|..|+.|++-+... +.| +.+ +. ..| ++|++ |.++++++|+|++=+-=|.
T Consensus 75 T~~Vtld~mi~H~~aV~Rga~~a-~vV-aDm------Pf--------gSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~- 137 (332)
T PLN02424 75 TLPITLDEMLVHCRAVARGANRP-LLV-GDL------PF--------GSYESSTDQAVESAVRMLKEGGMDAVKLEGGS- 137 (332)
T ss_pred CCCcCHHHHHHHHHHHhccCCCC-EEE-eCC------CC--------CCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc-
Confidence 34578999999999998766421 111 111 11 124 57888 5777888999976553111
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhhccCCccEEe-----------ecC---CCCCHHHHHHH-------HhcCCeEe---ec
Q 029526 90 HGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL-----------HGA---SGLSAELIKGC-------IERGVRKF---NV 145 (192)
Q Consensus 90 HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl-----------HGg---SG~~~e~~~~~-------i~~Gi~KI---Ni 145 (192)
-++++.|+..+ ..+||++= -|| -|-+.+..++. -+.|..=| .+
T Consensus 138 ------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V 204 (332)
T PLN02424 138 ------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECV 204 (332)
T ss_pred ------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 22345555555 23799882 376 66666644332 34554443 45
Q ss_pred chHHHHHHHHHhc
Q 029526 146 NTEVRKAYMDSLS 158 (192)
Q Consensus 146 ~T~l~~a~~~~~~ 158 (192)
-.++-...++.+.
T Consensus 205 p~~la~~It~~l~ 217 (332)
T PLN02424 205 PAPVAAAITSALQ 217 (332)
T ss_pred cHHHHHHHHHhCC
Confidence 6666666666653
No 477
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=61.49 E-value=19 Score=32.86 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCCc-EEEEecCcCCCCCCCCCCCCC
Q 029526 26 HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDID-ALAVCIGNVHGKYPSSGPNLK 101 (192)
Q Consensus 26 ~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD-~LAvaiGt~HG~y~~~~p~ld 101 (192)
.++++.+.|++.+..|=| . ...+.+.++-.++ +.+.. .|.++-| |-.|.+
T Consensus 5 ~~k~lL~~A~~~~yaV~A----f--------------N~~n~e~~~avi~AAEe~~sPvIlq~s~~--~~~~~g------ 58 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA----F--------------NVNNMEQILAIMEAAEATDSPVILQASRG--ARKYAG------ 58 (347)
T ss_pred cHHHHHHHHHHCCceEEE----E--------------EeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhhCC------
Confidence 367888888887766532 1 2345566666554 45543 3344433 334532
Q ss_pred HHHHHHHHh-hhccC-CccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 102 LDLLKDLHA-LSSKK-GVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 102 ~~~L~~I~~-~~~~~-~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
++.+..+-. ..... .||.+||=-.|.+.|.+++|++.|.+-|-|+-.
T Consensus 59 ~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS 107 (347)
T PRK13399 59 DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGS 107 (347)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCC
Confidence 222322222 22222 399999999999999999999999999988643
No 478
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=61.36 E-value=74 Score=28.88 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=48.9
Q ss_pred HHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 71 EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 71 ~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
.+.+.+.|||.+-+. ++. ...-+++.++.|.+.. .+..++.++ -...++++++.++|+..|++.....
T Consensus 32 a~~L~~~GV~~IE~G-------~p~-~~~~~~e~i~~i~~~~--~~~~i~~~~--r~~~~di~~a~~~g~~~i~i~~~~S 99 (378)
T PRK11858 32 ARMLDEIGVDQIEAG-------FPA-VSEDEKEAIKAIAKLG--LNASILALN--RAVKSDIDASIDCGVDAVHIFIATS 99 (378)
T ss_pred HHHHHHhCCCEEEEe-------CCC-cChHHHHHHHHHHhcC--CCeEEEEEc--ccCHHHHHHHHhCCcCEEEEEEcCC
Confidence 344667999999975 343 2334678888887643 234456563 2347789999999999999987665
Q ss_pred HHH
Q 029526 151 KAY 153 (192)
Q Consensus 151 ~a~ 153 (192)
...
T Consensus 100 d~h 102 (378)
T PRK11858 100 DIH 102 (378)
T ss_pred HHH
Confidence 543
No 479
>PRK02227 hypothetical protein; Provisional
Probab=61.27 E-value=10 Score=32.85 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=55.7
Q ss_pred hhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029526 3 AIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 3 ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
+.++||.-+|+|.- +|.-=-.+..-+++|+.||++|..+ | +.| ... + ++. .-++.-
T Consensus 140 a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~----g-LAG---SL~-------~---~di-p~L~~l 200 (238)
T PRK02227 140 AADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS----A-LAG---SLK-------F---EDI-PALKRL 200 (238)
T ss_pred HHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHh----H-hcc---cCc-------h---hhH-HHHHhc
Confidence 57899999999864 3333344556789999999887532 1 111 110 1 111 125677
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhc
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSS 113 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~ 113 (192)
+.|.|.+==.-..| .. ....||.+++.++++.++
T Consensus 201 ~pD~lGfRgavC~g-~d-R~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 201 GPDILGVRGAVCGG-GD-RTGRIDPELVAELREALR 234 (238)
T ss_pred CCCEEEechhccCC-CC-cccccCHHHHHHHHHHhh
Confidence 88999763222222 21 247899999999998873
No 480
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=61.25 E-value=9.1 Score=33.07 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=54.7
Q ss_pred hhhcCCCEeEeeCC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhh
Q 029526 3 AIVLGFDSLMVDGS-----HLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDET 77 (192)
Q Consensus 3 ai~~GFtSVM~D~S-----~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~T 77 (192)
|.++||.-+|+|.- +|.---.+..-+++|+.||++|..+ +--... ..++... +...
T Consensus 140 a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~--------aLAGSL----------~~~di~~-L~~l 200 (235)
T PF04476_consen 140 AAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC--------ALAGSL----------RFEDIPR-LKRL 200 (235)
T ss_pred HHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh--------hccccC----------ChhHHHH-HHhc
Confidence 67899999999953 3333345566789999999887532 111111 1112222 4568
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS 112 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~ 112 (192)
+.|.|.+= |-+-+...-+.-.||.++++++++.+
T Consensus 201 ~pD~lGfR-GAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 201 GPDILGFR-GAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred CCCEEEec-hhhCCCCCcCccccCHHHHHHHHHhc
Confidence 89999863 22222211111379999999998865
No 481
>PRK02382 dihydroorotase; Provisional
Probab=61.20 E-value=29 Score=31.87 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=59.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
.|+..|+|+|+-.....|...+...-++..+.+.... .+ .++..++. ..++++..++++. |+-.
T Consensus 80 aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s-~v--~~~~~~~~------------~~~~~~l~~l~~~-gv~~ 143 (443)
T PRK02382 80 SAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKS-IV--DFGINGGV------------TGNWDPLESLWER-GVFA 143 (443)
T ss_pred HHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCc-eE--EEEEEeee------------ccchhhHHHHHhc-Cccc
Confidence 4788899999988888887766666666666665422 22 22222211 1234566666654 6654
Q ss_pred EE-EecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCC
Q 029526 82 LA-VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126 (192)
Q Consensus 82 LA-vaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG 126 (192)
+. +-.....+. ..++.+.|.++-+.....+.|+.+|....
T Consensus 144 ~gkv~~~~~~~~-----~~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 184 (443)
T PRK02382 144 LGEIFMADSTGG-----MGIDEELFEEALAEAARLGVLATVHAEDE 184 (443)
T ss_pred eeEEEEEecCCC-----cccCHHHHHHHHHHHHhcCCeEEEecCCH
Confidence 42 111111111 23455666666655545579999998753
No 482
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=61.19 E-value=7.1 Score=33.85 Aligned_cols=75 Identities=24% Similarity=0.343 Sum_probs=41.8
Q ss_pred cCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee----cCCCCCHHHHHHHH--
Q 029526 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH----GASGLSAELIKGCI-- 136 (192)
Q Consensus 63 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH----GgSG~~~e~~~~~i-- 136 (192)
+-..|+|+.+|++. .|+|-+.+||.-. -+++.++...+...+.++|+||- |.|-.-.+..++.+
T Consensus 36 Ma~~~~E~~e~~~~--a~al~iNiGTl~~--------~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~ 105 (246)
T PF02110_consen 36 MAEAPEEVEEFASI--ADALVINIGTLTD--------ERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNN 105 (246)
T ss_dssp E--STTTHHHHHHC--TSEEEEESTTSSH--------HHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCH
T ss_pred ccCCHHHHHHHHHH--cCEEEEECCCCCH--------hHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHh
Confidence 44679999999975 4899999998731 12222332222333457999995 55544444445554
Q ss_pred -hcCCeEeecch
Q 029526 137 -ERGVRKFNVNT 147 (192)
Q Consensus 137 -~~Gi~KINi~T 147 (192)
+.-|-|-|.+-
T Consensus 106 ~~~~vIrGN~sE 117 (246)
T PF02110_consen 106 YKPTVIRGNASE 117 (246)
T ss_dssp S--SEEEEEHHH
T ss_pred CCCcEEEeCHHH
Confidence 33477778643
No 483
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=60.96 E-value=67 Score=27.03 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEee
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFN 144 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KIN 144 (192)
...++-.+-+++.|+|+|=+=| .=|.|.++ -.+-++.+++|++... ++|+.+|==.-.|...++.+.++|+.-|.
T Consensus 19 ~~l~~~~~~l~~~~~~~~H~Di--mDg~fvpn-~~~G~~~v~~lr~~~~--~~~lDvHLm~~~p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 19 SKLADEAQDVLSGGADWLHVDV--MDGHFVPN-LSFGPPVVKSLRKHLP--NTFLDCHLMVSNPEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHHHHHcCCCEEEEec--ccCccCCC-cCcCHHHHHHHHhcCC--CCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence 4455666668889999887766 33667642 4566788899988762 59999999988899999999999999998
Q ss_pred cchH
Q 029526 145 VNTE 148 (192)
Q Consensus 145 i~T~ 148 (192)
+..+
T Consensus 94 vH~e 97 (228)
T PTZ00170 94 FHIE 97 (228)
T ss_pred Eecc
Confidence 8766
No 484
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=60.81 E-value=74 Score=27.19 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhh---hhCCcEEEEecCcCCCCCCCCCCCCCHH
Q 029526 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID---ETDIDALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 27 Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+..++++-.+.|+.|-..-| ++ .+++. +-.-.+|+...+++. ..++|++-+|.-|.|. ++
T Consensus 134 ~~~~~~~l~~~G~eV~~~~~-~~-~~~~~-----~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt----------~~ 196 (239)
T TIGR02990 134 SRPMAQYFAVRGFEIVNFTC-LG-LTDDR-----EMARISPDCIVEAALAAFDPDADALFLSCTALRA----------AT 196 (239)
T ss_pred HHHHHHHHHhCCcEEeeeec-cC-CCCCc-----eeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh----------HH
Confidence 45667777778888877655 33 22221 113478888888887 4588999998766653 45
Q ss_pred HHHHHHhhhccCCccEE
Q 029526 104 LLKDLHALSSKKGVLLV 120 (192)
Q Consensus 104 ~L~~I~~~~~~~~iPLV 120 (192)
.+++|.+.. ++|.+
T Consensus 197 vi~~lE~~l---GkPVl 210 (239)
T TIGR02990 197 CAQRIEQAI---GKPVV 210 (239)
T ss_pred HHHHHHHHH---CCCEE
Confidence 577777766 57764
No 485
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=60.74 E-value=37 Score=27.16 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhh
Q 029526 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALS 112 (192)
Q Consensus 64 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~ 112 (192)
+++..+..+-+.+.|+|++=+ +...|.+.+. -.+.++.+++|++.+
T Consensus 11 ~~~~~~~~~~~~~~G~~~i~l--~~~d~~~~~~-~~~~~~~~~~i~~~~ 56 (211)
T cd00429 11 FANLGEELKRLEEAGADWIHI--DVMDGHFVPN-LTFGPPVVKALRKHT 56 (211)
T ss_pred HHHHHHHHHHHHHcCCCEEEE--ecccCCCCCc-cccCHHHHHHHHhhC
Confidence 344455555555666666543 3334444321 224456666666544
No 486
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.65 E-value=30 Score=30.05 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=44.5
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSK-GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+|+.+|.+-||+|.=. . | ..++++++.++. .+.+|+- || -+|+.+.+|. +||+|
T Consensus 196 ~A~~~gaD~I~ld~~~--~-e---~l~~~v~~i~~~~~i~i~as----GG--------------It~~ni~~~a-~~Gad 250 (269)
T cd01568 196 EALEAGADIIMLDNMS--P-E---ELKEAVKLLKGLPRVLLEAS----GG--------------ITLENIRAYA-ETGVD 250 (269)
T ss_pred HHHHcCCCEEEECCCC--H-H---HHHHHHHHhccCCCeEEEEE----CC--------------CCHHHHHHHH-HcCCC
Confidence 6888999999998732 2 3 345555555432 4555553 22 2356777766 89999
Q ss_pred EEEEecCcCCCCCCCCCCCCCHH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
.+++ |.. |.. .|.+||.
T Consensus 251 ~Isv--gal---~~s-~~~~D~s 267 (269)
T cd01568 251 VIST--GAL---THS-APALDIS 267 (269)
T ss_pred EEEE--cHH---HcC-CCccCcc
Confidence 9986 332 333 3667765
No 487
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=59.47 E-value=36 Score=32.98 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHhhhhCCcEEEEecC-cCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEee--c-----CCCCCHH----HHHHHHh
Q 029526 70 AEEFIDETDIDALAVCIG-NVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH--G-----ASGLSAE----LIKGCIE 137 (192)
Q Consensus 70 a~~Fv~~TgvD~LAvaiG-t~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlH--G-----gSG~~~e----~~~~~i~ 137 (192)
..+.+.+.|++.+=+.=| |.+-.|+--.+. .|++|+.|++... +++|.++ | -..-|++ +++++++
T Consensus 26 ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~-~~e~l~~l~~~~~--~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 26 IAEKLDDVGYWSLEVWGGATFDACIRFLNED-PWERLRELKKALP--NTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHcCCCEEEecCCcccccccccCCCC-HHHHHHHHHHhCC--CCEEEEEEccccccccccCchhhHHHHHHHHHH
Confidence 444567789999987411 222222211122 6999999998764 6888887 3 2334555 6888999
Q ss_pred cCCeEeecchHH
Q 029526 138 RGVRKFNVNTEV 149 (192)
Q Consensus 138 ~Gi~KINi~T~l 149 (192)
+|+.-|++...+
T Consensus 103 ~Gvd~irif~~l 114 (582)
T TIGR01108 103 NGMDVFRIFDAL 114 (582)
T ss_pred CCCCEEEEEEec
Confidence 999999998655
No 488
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=59.19 E-value=38 Score=29.84 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=62.0
Q ss_pred hhhcCCCEeEeeCCCCC--------HHHH--HHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHH
Q 029526 3 AIVLGFDSLMVDGSHLP--------FKDN--ISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEE 72 (192)
Q Consensus 3 ai~~GFtSVM~D~S~l~--------~eeN--i~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~ 72 (192)
|-+.||..|++|.-=.. +-+. =...++|++||+++||.|.-=.-.-++... ...-+..+++-.
T Consensus 41 Aa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~-------~~~~~~~~~~f~ 113 (273)
T PF10566_consen 41 AAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNV-------ANLEKQLDEAFK 113 (273)
T ss_dssp HHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBH-------HHHHCCHHHHHH
T ss_pred HHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhh-------HhHHHHHHHHHH
Confidence 56789999999875531 0000 134579999999999988765444332111 112344588889
Q ss_pred HhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCC
Q 029526 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125 (192)
Q Consensus 73 Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgS 125 (192)
.+++-||.-+=|-+=+.|+++ -.+..++|-+...+..+=+-+||..
T Consensus 114 ~~~~~Gv~GvKidF~~~d~Q~-------~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 114 LYAKWGVKGVKIDFMDRDDQE-------MVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHHCTEEEEEEE--SSTSHH-------HHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HHHHcCCCEEeeCcCCCCCHH-------HHHHHHHHHHHHHHcCcEEEecCCc
Confidence 999999988777654444332 2223344444333346888999963
No 489
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.08 E-value=38 Score=29.71 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=43.1
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcE
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDA 81 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~ 81 (192)
+|.++|.+-||+|. +++++ .+++++..+ ..+.||+ +|| -+++.+.++. +||+|.
T Consensus 203 ~A~~~gaDyI~lD~--~~~e~----l~~~~~~~~-~~i~i~A----iGG--------------It~~ni~~~a-~~Gvd~ 256 (277)
T PRK08072 203 EAVAAGADIIMFDN--RTPDE----IREFVKLVP-SAIVTEA----SGG--------------ITLENLPAYG-GTGVDY 256 (277)
T ss_pred HHHHcCCCEEEECC--CCHHH----HHHHHHhcC-CCceEEE----ECC--------------CCHHHHHHHH-HcCCCE
Confidence 67889999999984 55533 344444332 2355555 332 2345666655 899999
Q ss_pred EEEecCcCCCCCCCCCCCCCHH
Q 029526 82 LAVCIGNVHGKYPSSGPNLKLD 103 (192)
Q Consensus 82 LAvaiGt~HG~y~~~~p~ld~~ 103 (192)
+|++- .|.+ .|.+||.
T Consensus 257 IAvg~-----l~~s-a~~~D~~ 272 (277)
T PRK08072 257 ISLGF-----LTHS-VKALDIS 272 (277)
T ss_pred EEECh-----hhcC-CcccceE
Confidence 99874 3443 3666664
No 490
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=59.02 E-value=52 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecccccc
Q 029526 20 FKDNISHTKYISFLAHSKGMLVEAELGRLSG 50 (192)
Q Consensus 20 ~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~g 50 (192)
-++-|..-|++++.+|++|.-+=..|-|-|.
T Consensus 72 ~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G~ 102 (336)
T cd02932 72 NDEQIEALKRIVDFIHSQGAKIGIQLAHAGR 102 (336)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEccCCCc
Confidence 3788999999999999999999999988654
No 491
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.84 E-value=1.3e+02 Score=26.59 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=62.6
Q ss_pred CCEeEeeCCCCCHH----HHHHHHHHHHHHHHhC---CCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCc
Q 029526 8 FDSLMVDGSHLPFK----DNISHTKYISFLAHSK---GMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDID 80 (192)
Q Consensus 8 FtSVM~D~S~l~~e----eNi~~Tk~vv~~Ah~~---gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 80 (192)
+++|||.--|+.+- +.|.. .++.+++. ...||.|. .+.+|+++.+ +.|+|
T Consensus 159 sd~vLikdNHi~~~~~g~~~i~~---av~~~r~~~~~~~kIeVEv-------------------~slee~~ea~-~~gaD 215 (281)
T PRK06543 159 SDAVMAKDNHLAALAAQGLDLTE---ALRHVRAQLGHTTHVEVEV-------------------DRLDQIEPVL-AAGVD 215 (281)
T ss_pred CceEEEeHHHHHHHhCCchHHHH---HHHHHHHhCCCCCcEEEEe-------------------CCHHHHHHHH-hcCCC
Confidence 79999988887752 12333 23333322 24455552 2457888877 56888
Q ss_pred EEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchH
Q 029526 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTE 148 (192)
Q Consensus 81 ~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~ 148 (192)
.+=. -+.+++-+++.-+..+. ...|-.=| |+..+.+.+-.+.||.-|=++..
T Consensus 216 iImL-------------Dn~s~e~l~~av~~~~~-~~~leaSG--gI~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 216 TIML-------------DNFSLDDLREGVELVDG-RAIVEASG--NVNLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred EEEE-------------CCCCHHHHHHHHHHhCC-CeEEEEEC--CCCHHHHHHHHhcCCCEEEeCcc
Confidence 7754 23455666665555532 23344444 79999999999999988876653
No 492
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=58.80 E-value=1.1e+02 Score=25.86 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=74.4
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCC---CeEEEec---cccccCCCCCccccccccCCCHHHHHHHhh
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKG---MLVEAEL---GRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~g---v~VEaEl---G~i~g~e~~~~~~~~~~~~T~peea~~Fv~ 75 (192)
+.+++|.+.|.+-...+. |.... .++++.+| +.+--+. |.|... .+...--+|.+..+.++
T Consensus 90 ~~l~~Ga~kvvigt~a~~---~p~~~---~~~~~~~g~~~ivvslD~~~~~~v~~~-------gw~~~~~~~~e~~~~l~ 156 (232)
T PRK13586 90 RLLSLDVNALVFSTIVFT---NFNLF---HDIVREIGSNRVLVSIDYDNTKRVLIR-------GWKEKSMEVIDGIKKVN 156 (232)
T ss_pred HHHHCCCCEEEECchhhC---CHHHH---HHHHHHhCCCCEEEEEEcCCCCEEEcc-------CCeeCCCCHHHHHHHHH
Confidence 467788888877444433 22333 34455553 3332332 444211 11112247888888888
Q ss_pred hhCC-cEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecchHHH
Q 029526 76 ETDI-DALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150 (192)
Q Consensus 76 ~Tgv-D~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~T~l~ 150 (192)
+-|+ ..|--+|... |.. .-+|+++++.+.+.. .|+..=||-+.. ++++++.+.|+.-+=++|.+.
T Consensus 157 ~~g~~~ii~tdI~~d-Gt~----~G~d~el~~~~~~~~----~~viasGGv~s~-~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 157 ELELLGIIFTYISNE-GTT----KGIDYNVKDYARLIR----GLKEYAGGVSSD-ADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred hcCCCEEEEeccccc-ccC----cCcCHHHHHHHHhCC----CCEEEECCCCCH-HHHHHHHHCCCCEEEEehhhh
Confidence 8887 4444444332 333 335888899987653 566666666654 558888899999999999875
No 493
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.69 E-value=83 Score=26.37 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEe-e-cCC-----CCCH--------
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL-H-GAS-----GLSA-------- 129 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVl-H-GgS-----G~~~-------- 129 (192)
.+.+++.+++++.|.|.+=+++...|..+. ....+.+.+++|++..++.++.++. . ++. +.++
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~ 93 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESDERLA--RLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL 93 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcccccc--cccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence 578999999999999999988765443221 1234455677788777665665542 1 210 1122
Q ss_pred HHHH----HHHhcCCeEeecc
Q 029526 130 ELIK----GCIERGVRKFNVN 146 (192)
Q Consensus 130 e~~~----~~i~~Gi~KINi~ 146 (192)
+.++ .|..+|+..|++.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~ 114 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA 114 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC
Confidence 2233 3668999999975
No 494
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=58.47 E-value=52 Score=30.98 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=47.8
Q ss_pred hhhC-CcEEEEecCcCCCCCCCCCCCCCHHHHHHHHh---hhc-----cCCccEEeecCCCCCHHHHHHHHhcCCeEeec
Q 029526 75 DETD-IDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA---LSS-----KKGVLLVLHGASGLSAELIKGCIERGVRKFNV 145 (192)
Q Consensus 75 ~~Tg-vD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~---~~~-----~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi 145 (192)
++.| .|.+.+- .-+ |.-.+.. --+.+|..|.+ .+. ..+||++.=||-|.|.. +..+..+|..=|-+
T Consensus 178 ~~~g~aD~Ivve-~EA-GGHtg~~--~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~-vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 178 RRVPVADDICVE-ADS-GGHTDNR--PLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEA-AAAAFMLGADFIVT 252 (444)
T ss_pred HhCCCCcEEEEe-ccC-CCCCCCC--cHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHH-HHHHHHcCCcEEEe
Confidence 3455 4888664 222 3222212 23477777753 331 12689999999998765 99999999999999
Q ss_pred chHHHH
Q 029526 146 NTEVRK 151 (192)
Q Consensus 146 ~T~l~~ 151 (192)
+|-++.
T Consensus 253 GT~fla 258 (444)
T TIGR02814 253 GSVNQC 258 (444)
T ss_pred ccHHHh
Confidence 998854
No 495
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=58.21 E-value=49 Score=31.83 Aligned_cols=65 Identities=8% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHh
Q 029526 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIE 137 (192)
Q Consensus 65 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~ 137 (192)
-++.+..+.+++-|+--+=+.-=..-|.- ...|+++++.|.+.+ ++|++--||-|.+++ |.++++
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~DGt~----~G~d~~l~~~v~~~~---~ipviasGG~g~~~d-~~~~~~ 502 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCDGQG----KGFDIELVKLVSDAV---TIPVIASSGAGTPEH-FSDVFS 502 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeeccccccc----cCcCHHHHHHHHhhC---CCCEEEECCCCCHHH-HHHHHh
Confidence 36667666677888854443321222322 335899999999988 699999999998877 555554
No 496
>PRK09237 dihydroorotase; Provisional
Probab=58.10 E-value=1.4e+02 Score=26.58 Aligned_cols=124 Identities=17% Similarity=0.126 Sum_probs=56.2
Q ss_pred hhhhcCCCEeEeeCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--eccccccCCCCCccccccccCCCHHHHHHHhhh--h
Q 029526 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEA--ELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDE--T 77 (192)
Q Consensus 2 ~ai~~GFtSVM~D~S~l~~eeNi~~Tk~vv~~Ah~~gv~VEa--ElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~--T 77 (192)
.|+..|+|+|+-=++.-| +|++.-.+..+.+- +..+=. .+..-+...... ..+...-++++.++++.+ .
T Consensus 76 ~~~~~G~Ttv~~~~~~~~--~~~~~~~~~~~~~~--~~~v~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 148 (380)
T PRK09237 76 VGVRSGVTTVVDAGSAGA--DNFDDFRKLTIEAS--KTRVLAFLNISRIGLLAQDE---LADLEDIDADAVAEAVKRNPD 148 (380)
T ss_pred HHHhCCcCEEEECCCCCC--CCHHHHHHHHHhhh--CcEEEEEEeeecccccccch---hcCHhHCCHHHHHHHHHhCcC
Confidence 478999999865233223 55555444444331 332221 121111110000 001112378888888874 4
Q ss_pred CCcEEEEecCcCCCCCCCCCCCCCHHHH-HHHHhhhccCCccEEeecC-CCCCHHHHHHHHhcC
Q 029526 78 DIDALAVCIGNVHGKYPSSGPNLKLDLL-KDLHALSSKKGVLLVLHGA-SGLSAELIKGCIERG 139 (192)
Q Consensus 78 gvD~LAvaiGt~HG~y~~~~p~ld~~~L-~~I~~~~~~~~iPLVlHGg-SG~~~e~~~~~i~~G 139 (192)
+|-.|...+.-. .++. +.++..++ +.+.+. .+.|+.+|-+ ++...+++.+....|
T Consensus 149 ~v~glk~~~~~~--v~~~--~~~~~~~~~~~~a~~---~g~~v~~H~~~~~~~~~~l~~~l~~g 205 (380)
T PRK09237 149 FIVGIKARMSSS--VVGD--NGIEPLELAKAIAAE---ANLPLMVHIGNPPPSLEEILELLRPG 205 (380)
T ss_pred cEEEEEEEEecc--cccc--cCCchHHHHHHHHHh---cCCCEEEEcCCCCCCHHHHHhhccCC
Confidence 566666554222 2221 22333333 444432 3688888842 233344444433333
No 497
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=57.97 E-value=85 Score=29.29 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=48.3
Q ss_pred CCCHHHHHHHhhhh-----CCcEEEEecCcCCCCCCCCCCCCC----HHHHHHHHhhhccCCccEEeecCCCC-CHHHHH
Q 029526 64 LTDVNQAEEFIDET-----DIDALAVCIGNVHGKYPSSGPNLK----LDLLKDLHALSSKKGVLLVLHGASGL-SAELIK 133 (192)
Q Consensus 64 ~T~peea~~Fv~~T-----gvD~LAvaiGt~HG~y~~~~p~ld----~~~L~~I~~~~~~~~iPLVlHGgSG~-~~e~~~ 133 (192)
.-+|+|+.+.+++- +++.+.++ | + +.|-++ ++.|+.+++... ++.+.|- ++|+ ..+.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~~~~~V~ia-----G--~-GEPLl~~e~~~~~l~~~~~~~~--~i~i~ls-TNG~~l~e~i~ 127 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIPQLSVVGIA-----G--P-GDPLANIGKTFQTLELVARQLP--DVKLCLS-TNGLMLPEHVD 127 (442)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEe-----c--C-CCcccCccccHHHHHHHHHhcC--CCeEEEE-CCCCCCHHHHH
Confidence 45889999987653 45555544 2 1 246554 556666666532 5777774 3443 478899
Q ss_pred HHHhcCCeEeecchH
Q 029526 134 GCIERGVRKFNVNTE 148 (192)
Q Consensus 134 ~~i~~Gi~KINi~T~ 148 (192)
+..++|+..|+|+=.
T Consensus 128 ~L~~~gvd~V~islk 142 (442)
T TIGR01290 128 RLVDLGVGHVTITIN 142 (442)
T ss_pred HHHHCCCCeEEEecc
Confidence 999999999988644
No 498
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=57.91 E-value=98 Score=26.41 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=49.4
Q ss_pred CHHHHH---HHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcC---
Q 029526 66 DVNQAE---EFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG--- 139 (192)
Q Consensus 66 ~peea~---~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~G--- 139 (192)
++++.. +.+.+.|||.+=+.+... .|+ ++++++.|.+... ++++..+-- .-.++++++.++|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~-------~~~-~~~~~~~l~~~~~--~~~~~~l~r--~~~~~v~~a~~~~~~~ 85 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAA-------SPG-DFEAVKRIAREVL--NAEICGLAR--AVKKDIDAAAEALKPA 85 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC-------CHH-HHHHHHHHHHhCC--CCEEEEEcc--CCHhhHHHHHHhCCCC
Confidence 444444 446679999998863221 132 6888998887653 577776652 2367899999999
Q ss_pred -CeEeecchHH
Q 029526 140 -VRKFNVNTEV 149 (192)
Q Consensus 140 -i~KINi~T~l 149 (192)
+..|++...+
T Consensus 86 ~~~~i~i~~~~ 96 (268)
T cd07940 86 KVDRIHTFIAT 96 (268)
T ss_pred CCCEEEEEecC
Confidence 9999997544
No 499
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=57.85 E-value=47 Score=27.61 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCeEEEeccccccCCCCCccccccccCCCHHHHHHHhhhhCCcEEEEecCcCCCCCCC
Q 029526 25 SHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPS 95 (192)
Q Consensus 25 ~~Tk~vv~~Ah~~gv~VEaElG~i~g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~ 95 (192)
+..++++++|...||.+--|...-. + .....+.+++++.+++++.+-+.+-+.+=+.|=.+.+
T Consensus 123 ~~l~~l~~~A~~~gi~l~lE~~~~~--~------~~~~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~~~~ 185 (254)
T TIGR03234 123 ENLRYAADALDRIGLTLLIEPINSF--D------MPGFFLTTTEQALAVIDDVGRENLKLQYDLYHMQRMG 185 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCcc--c------CCCChhcCHHHHHHHHHHhCCCCEeEeeehhhhhhhC
Confidence 4457788888888877777632100 0 0012468999999999999999999999999976654
No 500
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=57.81 E-value=51 Score=29.41 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=41.4
Q ss_pred HHHHHHHhhhhCCcEEEEecCcCCCCCCCCCCCCCHHHHHHHHhhhccCCccEEeecCCCCCHHHHHHHHhcCCeEeecc
Q 029526 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVN 146 (192)
Q Consensus 67 peea~~Fv~~TgvD~LAvaiGt~HG~y~~~~p~ld~~~L~~I~~~~~~~~iPLVlHGgSG~~~e~~~~~i~~Gi~KINi~ 146 (192)
.+|+++.+ +.|+|.+=. -+..++-++++-+..+. .+.|--=| |+..+.+++-.+.||.-|=++
T Consensus 218 leea~ea~-~~gaDiI~L-------------Dn~s~e~~~~av~~~~~-~~~ieaSG--GI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 218 LDELDQAL-KAGADIIML-------------DNFTTEQMREAVKRTNG-RALLEVSG--NVTLETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHHHHH-HcCCCEEEe-------------CCCChHHHHHHHHhhcC-CeEEEEEC--CCCHHHHHHHHhcCCCEEEeC
Confidence 57788877 467776653 12234555555554431 34444444 788899999999998888776
Q ss_pred hH
Q 029526 147 TE 148 (192)
Q Consensus 147 T~ 148 (192)
..
T Consensus 281 al 282 (296)
T PRK09016 281 AL 282 (296)
T ss_pred cc
Confidence 53
Done!