RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029526
(192 letters)
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A
{Escherichia coli} SCOP: c.1.10.2
Length = 286
Score = 240 bits (616), Expect = 7e-81
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+
Sbjct: 91 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAE 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A+ F++ T +D+LAV IG HG Y + P + L ++ + V LV
Sbjct: 151 SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKT-PKIDFQRLAEIREVV---DVPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHGAS + E ++ IE GV K NV TE++ A+ ++ P+ D + M +A
Sbjct: 207 LHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV K+ + GS+ +
Sbjct: 267 MKEVVRNKINVCGSANRI 284
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.20A {Coccidioides immitis}
Length = 306
Score = 239 bits (611), Expect = 7e-80
Identities = 71/189 (37%), Positives = 103/189 (54%), Gaps = 5/189 (2%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VEDYEAKLT 65
GFDS+MVD SH ++N+ T+ + +++G+ EAE GR+ G EDG+ D E LT
Sbjct: 113 GFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLT 172
Query: 66 DVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125
++EEF+ T I+ LA GNVHG Y G L + L+ ++ ++ V LVLHGA
Sbjct: 173 TPEESEEFV-ATGINWLAPAFGNVHGNYGPRGVQLDYERLQRINEAVGER-VGLVLHGAD 230
Query: 126 GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR--PKSDLIHLMASAKEAMKAVVAEKM 183
+ E+ + CIERGV K NVN V Y+ + + L AM+A V + M
Sbjct: 231 PFTKEIFEKCIERGVAKVNVNRAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIM 290
Query: 184 RLFGSSGKA 192
+ S+GKA
Sbjct: 291 DMIDSTGKA 299
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics,
center for structural genomics of infec diseases, csgid,
alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis}
Length = 288
Score = 235 bits (602), Expect = 9e-79
Identities = 71/198 (35%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
EAI GF S+M+D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 97 KEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG- 155
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
D + + ++ T ID LA +G+VHG Y PNL ++ + + GV LV
Sbjct: 156 -VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PNLGFAEMEQVRDFT---GVPLV 210
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG +G+ I+ I G K NVNTE + + ++ + D + ++A
Sbjct: 211 LHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDA 270
Query: 175 MKAVVAEKMRLFGSSGKA 192
+KA V K+R FGS+GKA
Sbjct: 271 IKATVIGKIREFGSNGKA 288
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor,
lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB:
3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Length = 307
Score = 224 bits (574), Expect = 3e-74
Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 31/219 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+A+ GF S+M+D SH F++N+ T + +AH+ G+ VEAELGRL G ED ++V++
Sbjct: 91 EKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLL 119
+A L + +AE+F+ E+ +D LA IG HG + G P L + L+++ L+ + L
Sbjct: 151 DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT---NIPL 207
Query: 120 VLHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158
VLHGAS G+ E ++ ++ G+ K N +T++R A++ +
Sbjct: 208 VLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVR 267
Query: 159 R------PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
+ + DL + A+ A+K VV E+M+L GS+ K
Sbjct: 268 KVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase,
metal-depdendent aldolase, lyase; 2.00A {Thermus
aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Length = 305
Score = 224 bits (572), Expect = 7e-74
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 31/220 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ A+ GF S+M+D SH F+ N+ T+ + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLL 119
+A LT+ +A F++ T D LAV IG HG Y G P + L+ + L L
Sbjct: 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV---PAPL 205
Query: 120 VLHGASG---------------------LSAELIKGCIERGVRKFNVNTEVRKAYMDSLS 158
VLHGAS + E IK I G+ K N +T++R A+ +
Sbjct: 206 VLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIR 265
Query: 159 R-----PKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
PK D + A+EA+K VV +M LFGS G+A
Sbjct: 266 EALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
fructose-1,6-bisphosphate aldolase, glycolytic pathway,
giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A*
3gb6_A*
Length = 323
Score = 212 bits (543), Expect = 2e-69
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 36/222 (16%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
AI LGF S+M+D SH PF +N+ TK + AH++ + VEAELG L G E+ +
Sbjct: 92 KMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDV---QN 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS---GPNLKLDLLKDLHALSSKKGV 117
+LT+ A++F++ T +DALAV IG HG Y L +D +K + L+ G+
Sbjct: 149 TVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLT---GI 205
Query: 118 LLVLHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDS 156
LV+HG+S G+ E I I GV K NV+++ R A +
Sbjct: 206 PLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDSRMAMTGA 265
Query: 157 L-----SRPKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
+ P+ D + ++A+ ++ K++ FGS+G A
Sbjct: 266 IRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHA 307
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone,
glyceraldehyd phosphate, aldol condensation, glycolysis,
lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB:
3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Length = 349
Score = 185 bits (472), Expect = 3e-58
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ F S M DGS +P +N++ + + A + +++E E+G + G EDG+ E
Sbjct: 118 SKGGNPLFQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEIN 177
Query: 61 EAKLTDVNQAEEFIDETDIDA-----LAVCIGNVHGKYPSSGPNLKLDLLKD-------- 107
E T E+ I+ LA GNVHG Y L+ D+L
Sbjct: 178 EKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAK 237
Query: 108 LHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYM-----------DS 156
L + K V HG SG I+ + GV K NV+T+ + A+ D
Sbjct: 238 LGLPADAKPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAFTRPIAGHMFTNYDG 297
Query: 157 LSRPKSDLI--------HLMASAKEAMKAVVAEKMRLFGSSGKA 192
+ + ++ + A+ +M V + +GK+
Sbjct: 298 VLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACNDLHCAGKS 341
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 175 bits (445), Expect = 3e-54
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 37/228 (16%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++N+S + + G+ +E ELG G EDG T
Sbjct: 129 KTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGI 188
Query: 59 DYEAKLTDVNQAEEFIDE----TDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHA---- 110
D T + +D ++A GNVHG Y +L+ ++LK+
Sbjct: 189 DNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKD 248
Query: 111 ---LSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS----LSRPKSD 163
L+S K + V HG SG + IK + GV K N++T+ + A+ D + ++
Sbjct: 249 KFALNSDKPINFVFHGGSGSELKDIKNAVSYGVIKMNIDTDTQWAFWDGVREYELKNRAY 308
Query: 164 LIH--------------------LMASAKEAMKAVVAEKMRLFGSSGK 191
L + S +E+M + K
Sbjct: 309 LQGQIGNPEGDDKPNKKYYDPRVWLRSGEESMIKRLEIAFEDLNCINK 356
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 166 bits (422), Expect = 8e-51
Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 36/227 (15%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++NI GM +E ELG G EDG +
Sbjct: 131 AATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHM 190
Query: 59 DYEAKLTDVNQA----EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK 114
D A T E + +A GNVHG Y + L +L+D SK
Sbjct: 191 DASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSK 250
Query: 115 K------GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI 165
K + V HG SG +A+ IK + GV K N++T+ + A + + +
Sbjct: 251 KHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYL 310
Query: 166 H---------------------LMASAKEAMKAVVAEKMRLFGSSGK 191
+ + + +M A + + + +
Sbjct: 311 QGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 3e-04
Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 21 KDNISHTKYISFLAHSKGM-LVEAELGRLSGTEDGLTVEDYE---AKLTDVNQAEEFIDE 76
KD +S T + + SK +V+ + E+ L +Y+ + + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFV------EEVLR-INYKFLMSPIKTEQRQPSMMTR 110
Query: 77 TDIDALAVCIGNVH--GKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG-----LSA 129
I+ + KY S L L + L L K V ++ G G ++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVAL 168
Query: 130 EL-----IKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHL 167
++ ++ ++ + F +N + + + P++ L L
Sbjct: 169 DVCLSYKVQCKMDFKI--FWLN-------LKNCNSPETVLEML 202
Score = 32.9 bits (74), Expect = 0.057
Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 49/202 (24%)
Query: 23 NISHTKYISFLAHSKGM-------LVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFID 75
+ K + L G+ + ++ + + + + L + N E ++
Sbjct: 146 ELRPAKNV--LID--GVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 76 ETDIDALAVCIGNVHGKYPSSGPNLKLDL------LKDLHALSSKKGVLLVLHGASGLSA 129
+ L I N+KL + L+ L + LLVL +A
Sbjct: 201 M--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NA 256
Query: 130 ELIK----GC-I-----ERGVRKFNVNTEVRKAYMDSLSRP--KSDLIHLMASA------ 171
+ C I + V F +D S ++ L+
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 172 ---KEAMK------AVVAEKMR 184
+E + +++AE +R
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR 338
Score = 32.9 bits (74), Expect = 0.065
Identities = 28/190 (14%), Positives = 50/190 (26%), Gaps = 68/190 (35%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYI-SFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA 62
I FDS D P+ D Y S + H L E + +
Sbjct: 455 IPKTFDS---DDLIPPYLDQ-----YFYSHIGH-----------HLKNIEHPERMTLFRM 495
Query: 63 KLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLH 122
D F+++ H + L+ L+ L
Sbjct: 496 VFLDFR----FLEQKIR----------HDSTAWNASGSILNTLQQL-------------- 527
Query: 123 GASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR--------PKSDLIHLMASAKEA 174
+ K I + A +D L + +DL+ + A++
Sbjct: 528 -------KFYKPYI---CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED- 576
Query: 175 MKAVVAEKMR 184
+A+ E +
Sbjct: 577 -EAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 36/173 (20%)
Query: 27 TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCI 86
K++ +++ E ++ + L LT+ +++ DI ALA +
Sbjct: 62 GKFLGYVSS------LVEPSKVGQFDQVL-----NLCLTEFENC--YLEGNDIHALAAKL 108
Query: 87 GNVHGKYPSSGPNLKLDLLKD-LHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKF-- 143
+ +L+K+ + A K SA L + E +
Sbjct: 109 LQENDTTLVK----TKELIKNYITARIMAKRPFDKKSN----SA-LFRAVGEGNAQLVAI 159
Query: 144 -----NVNT---EVRKAYMDSLSRP-KSDLIHLMASAKEAMKAVVAEKMRLFG 187
N + E+R Y DLI A + + ++F
Sbjct: 160 FGGQGNTDDYFEELRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Score = 34.3 bits (78), Expect = 0.023
Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 91/258 (35%)
Query: 7 GFD--SLMVDGSHLPFKDNISHTKYISF-------LAH----------SKGMLVEAELGR 47
G + + + S+ P KD + IS LAH + G L G
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG- 269
Query: 48 LSGTEDGLTVEDYEAKLT-DVNQAEEFIDETDIDALAVC--IG-NVHGKYPSSGPNLKLD 103
+G GL A + + E F A+ V IG + YP++ +L
Sbjct: 270 ATGHSQGLVT----AVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNT--SLPPS 322
Query: 104 LLKDLHALSSKKGV----LLVLHGASGLSAELIKGCIER-----------------GVRK 142
+L+D +L + +GV L + S L+ E ++ + + G +
Sbjct: 323 ILED--SLENNEGVPSPMLSI----SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 143 FNV----------NTEVRK----AYMDSLSR-PKSD---------L-I------HLMASA 171
V N +RK + +D SR P S+ L + HL+ A
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 172 KEAMKAVVAEKMRLFGSS 189
+ + + + F +
Sbjct: 436 SDLINKDLVKNNVSFNAK 453
Score = 34.3 bits (78), Expect = 0.026
Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 103/237 (43%)
Query: 8 FDSLMVDGSHLP---FKD-NISHTKYISFLAHSKGMLVEAELGRLSGTEDG----LTVED 59
F++ +VDG FK+ N T Y F +E G LS T+ +E
Sbjct: 1693 FET-IVDGKLKTEKIFKEINEHSTSYT-F---------RSEKGLLSATQFTQPALTLME- 1740
Query: 60 YEAKLTDVNQAEEFIDETDIDALAVCIGNVH--GKYPSSGPNLKLDLLKDLHALSSKKGV 117
E+ + I A A G H G+Y + AL+S V
Sbjct: 1741 -------KAAFEDLKSKGLIPADATFAG--HSLGEY--A-------------ALASLADV 1776
Query: 118 L-------LVLH-G---------------------------ASGLSAELIKGCIERGVRK 142
+ +V + G A+ S E ++ +ER ++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 143 ---------FNVNTE--V----RKA------YMDSLSRPKSDLIHLMASAK-EAMKA 177
+NV + V +A ++ + K D+I L S E ++
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.2 bits (70), Expect = 0.23
Identities = 37/229 (16%), Positives = 65/229 (28%), Gaps = 106/229 (46%)
Query: 34 AHSKGMLVEAELGRLSGTEDGLTVEDYE----AKLTDV-NQAEEFIDET------DI--- 79
+ +GM G+ + Y+ A+ DV N+A+ +T DI
Sbjct: 1626 SQEQGM--------------GM--DLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVIN 1667
Query: 80 --DALAVCIGNVHGK-----YPS-------SGPNLKLDLLKDLHALSSK------KGVL- 118
L + G GK Y + G + K+++ S+ KG+L
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 119 --------LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYM---------------D 155
L L + E +K +G+ + A D
Sbjct: 1728 ATQFTQPALTLMEKAAF--EDLK---SKGLIPAD-------ATFAGHSLGEYAALASLAD 1775
Query: 156 SLSRPKSDLIHL-------MASAKE---------AMKAVVAEKMRLFGS 188
+S L+ + M A M A+ ++ S
Sbjct: 1776 VMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
cobalamin biosynthesis, metal-bindin parallel beta
sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
1qgo_A*
Length = 264
Score = 29.1 bits (65), Expect = 0.89
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 114 KKGVLLVLHGASGLSA-ELIKGCIERGVRKFNVNTEVRKAY 153
KK +L+V G S E ER + + ++ +A+
Sbjct: 2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAF 42
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A
{Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Length = 269
Score = 28.8 bits (64), Expect = 0.99
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 112 SSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
+ K G+LLV G S A + VR + + VR AY
Sbjct: 7 AQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAY 48
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 28.5 bits (63), Expect = 1.6
Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 38/183 (20%)
Query: 7 GFDSLMVDGSHLPFKDNISHT---------KYISFLAHSKGMLVEAELGRLSGTE----D 53
GF L +D S + + + + + G + GTE
Sbjct: 124 GFTKLHLDTSMGCAGEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVPIPG 183
Query: 54 GLTVEDYEAKLTDVNQAEE--------FIDETDIDALAVCIGNVH-----------GKYP 94
G E ++T A E F + A + +G V Y
Sbjct: 184 GALEELDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYD 243
Query: 95 SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYM 154
+ + + L L G++ H + + ++ + G V + A
Sbjct: 244 RA----RAEKLSA--TLGQLHGMVFEAHSTDYQTPDALRELVADGFAILKVGPGLTFALR 297
Query: 155 DSL 157
++L
Sbjct: 298 EAL 300
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 2.3
Identities = 26/149 (17%), Positives = 41/149 (27%), Gaps = 48/149 (32%)
Query: 35 HSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYP 94
K M+ E + ED E + AE+F + HG
Sbjct: 918 EKKEMIQEVIV-----EEDLEPFEASKE------TAEQFKHQ-------------HGDKV 953
Query: 95 SSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNT------E 148
+ + L KG L + A L+ G I G +N T
Sbjct: 954 DIFEIP--ETGEYSVKL--LKGATLYIPKALRFDR-LVAGQIPTG---WNAKTYGISDDI 1005
Query: 149 VRKAYMDSLSRPKSDLIHL-MASAKEAMK 176
+ + +D + + S EA
Sbjct: 1006 ISQ--VD-------PITLFVLVSVVEAFI 1025
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like
membrane protein, mitochondrial ribosome, respir chain
biogenesis; 2.10A {Saccharomyces cerevisiae}
Length = 249
Score = 27.4 bits (60), Expect = 2.9
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 70 AEEFIDETDIDALA----VCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGAS 125
A+ F +++ +D L+ + P N+ ++ + G
Sbjct: 86 AQMFKNDSVLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVE 145
Query: 126 GLS-AELIKGCIERGVRKFNVNTE 148
LS EL + C+ RG++ + V+ E
Sbjct: 146 SLSQEELYQACVSRGMKAYGVSKE 169
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 27.3 bits (61), Expect = 3.0
Identities = 20/144 (13%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTDV 67
++ +G ++++ K++S +K + + AE+ ++ + +++ +
Sbjct: 84 KGKILWEGKIFHYRESW---KFLSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIGE 140
Query: 68 NQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGL 127
N+ + +++ A +V ++ K + A G L+ G +
Sbjct: 141 NEFLLSV----LESFAGWADSVSLSDLTALELAKE-----IRAALRWGGPGLIRGGCKAV 191
Query: 128 SAELIKGCIERGVRKFNVNTEVRK 151
EL + +E K EV +
Sbjct: 192 IDELERIIMENKG-KILTRKEVVE 214
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 26.9 bits (60), Expect = 4.4
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGN-VHGKYPSSGPNLKLDLLKDLHALSSKKG 116
EDY D ++ +++ D+D + G G D +++L ++ +
Sbjct: 154 EDYTI---DEKFVKDAVEDYDVDGIIGIAGTTELGTI---------DNIEELSKIAKENN 201
Query: 117 VLLVLH--GASG 126
+ +H A G
Sbjct: 202 IY--IHVDAAFG 211
>3pv9_D Putative uncharacterized protein PH1245; crispr, crispr-associated
CAS1, metallonuclease, DNAse, PROK system, immune
system, nuclease; 2.85A {Pyrococcus horikoshii}
Length = 322
Score = 26.7 bits (59), Expect = 5.6
Identities = 2/22 (9%), Positives = 13/22 (59%)
Query: 119 LVLHGASGLSAELIKGCIERGV 140
+ ++G ++++ + ++G+
Sbjct: 40 IYIYGHVNITSQALHYIAQKGI 61
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system,
structural genomics, protein structure initiative; 2.70A
{Thermotoga maritima}
Length = 319
Score = 25.9 bits (57), Expect = 8.3
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 119 LVLHGASGLSAELIKGCIERGV 140
+ + G L+ ++ ++ +
Sbjct: 38 IKVFGEVDLNKRFLEFLSQKRI 59
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_F 4a1c_F 4a1e_F
Length = 255
Score = 26.1 bits (56), Expect = 8.6
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 109 HALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLM 168
++ K + L ++ E +N N E+RK + + KS H +
Sbjct: 181 KLVNKKTATAVALTEVRNEDKAKLQQFSELFKTNYNANDELRKTWGGGILGQKS--QHKV 238
Query: 169 ASAKEAMKAVVAEKMRL 185
+ +A++ +K +L
Sbjct: 239 EALAKAVQEEQIKKAKL 255
>2yzs_A Putative uncharacterized protein; uncharacterized conserved
protein, structural genomics, unknown function, NPPSFA;
2.00A {Aquifex aeolicus}
Length = 315
Score = 25.9 bits (57), Expect = 8.6
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 119 LVLHGASGLSAELIKGCIERGV 140
+ + L+ +L+ +G+
Sbjct: 38 IFVFAELSLNTKLLNFLASKGI 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,887,696
Number of extensions: 172194
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 38
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)