BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029528
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 148 EEECGICMETNSKIVLPNCNHAMCLKCYREW 178
EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 15 EEECCICMDGRADLILP-CAHSFCQKCIDKW 44
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 148 EEECGICMETNSKIVLPNCNHAMCLKCYR 176
E +CGICME + V CNH +C C++
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQ 43
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.4 bits (67), Expect = 0.57, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWY 179
+++ E C +C+E + V+ C H C C W+
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 46
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW 364
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW 364
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW 362
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW 362
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAW 368
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKC 174
++ E C IC++ K V +C H CLKC
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKC 46
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 151 CGICME-TNSKIVLPNCNHAMCLKCYREW 178
CGIC E N +++P C+H C C R++
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKF 53
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+E E +C IC E + V NC H+ C C EW
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEW 94
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+E E +C IC E + V NC H+ C C EW
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEW 83
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKC 174
++ E C +C++ IV C H +C +C
Sbjct: 10 LQEERTCKVCLDRAVSIVFVPCGHLVCAEC 39
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSW 57
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+E E +C IC E + V NC H+ C C EW
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEW 83
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSW 54
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C IC E + + + C H MC C W
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAW 56
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 142 DADIEREEECGICMETNSKIVLPNCNH 168
D D R E+ GI E +K++ PN NH
Sbjct: 235 DGDFLRAEQQGINAEKLTKVLYPNDNH 261
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 142 DADIEREEECGICMETNSKIVLPNCNH 168
D D R E+ GI E +K++ PN NH
Sbjct: 235 DGDFLRAEQQGINAEKLTKVLYPNDNH 261
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 142 DADIEREEECGICMETNSKIVLPNCNH 168
D D R E+ GI E +K++ PN NH
Sbjct: 236 DGDFLRAEQQGINAEKLTKVLYPNDNH 262
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYRE 177
++ E C IC++ K V +C H CLKC +
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQ 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 149 EECGICME--TNSKIVLPNCNHAMCLKCYREW 178
E C IC+E +N + LP C HA C C W
Sbjct: 6 ERCPICLEDPSNYSMALP-CLHAFCYVCITRW 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,282,863
Number of Sequences: 62578
Number of extensions: 124546
Number of successful extensions: 360
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 37
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)