BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029528
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 14/63 (22%)
Query: 116 TEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCY 175
+ED Q +++M R + Q TD EEEC ICM+ + ++LP C H+ C KC
Sbjct: 125 SEDTCQASMWMGRVK--------QLTD-----EEECCICMDGKADLILP-CAHSFCQKCI 170
Query: 176 REW 178
+W
Sbjct: 171 DKW 173
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 181
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 148 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 182
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 181
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 181
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 181
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
+Q TD EEEC ICM+ + ++LP C H+ C KC +W
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKW 181
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 24/70 (34%)
Query: 133 DDEEQRQYTDADIEREEE---------------CGICMETNSKIVLP---------NCNH 168
D+ ++ Q+T A IE E+ CG+CME + P NCNH
Sbjct: 193 DNSQRSQHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCNH 252
Query: 169 AMCLKCYREW 178
CLKC R+W
Sbjct: 253 CYCLKCIRKW 262
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 151 CGICME-----TNSK----IVLPNCNHAMCLKCYREW 178
CGICME N +L NCNH CLKC R+W
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKW 352
>sp|Q9C8E1|ORTH4_ARATH Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis
thaliana GN=ORTH4 PE=3 SV=1
Length = 622
Score = 36.6 bits (83), Expect = 0.096, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 100 AIIYPSLLQLQRGVTDTE----DKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICM 155
+++ ++ +Q VT TE K+Q+ + DDEE+++ E C IC+
Sbjct: 81 SVLVAAIRAIQADVTLTEAEKAKKRQRLMSGGGDDGVDDEEKKKL-------EIFCSICI 133
Query: 156 ETNSKIVLPNCNHAMCLKCYREW 178
+ + V C H CLKC+ +W
Sbjct: 134 QLPERPVTTPCGHNFCLKCFEKW 156
>sp|Q680I0|ORTH5_ARATH E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana
GN=ORTH5 PE=2 SV=1
Length = 623
Score = 36.6 bits (83), Expect = 0.096, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 100 AIIYPSLLQLQRGVTDTE----DKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICM 155
+++ ++ +Q VT TE K+Q+ + DDEE+++ E C IC+
Sbjct: 81 SVLVTAIRAIQADVTLTEAEKAKKRQRLMSGGGDDGVDDEEKKKL-------EIFCSICI 133
Query: 156 ETNSKIVLPNCNHAMCLKCYREW 178
+ + V C H CLKC+ +W
Sbjct: 134 QLPERPVTTPCGHNFCLKCFEKW 156
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 151 CGICMETNSKIVLP---------NCNHAMCLKCYREW 178
CGICME + P NCNH CLKC R+W
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKW 313
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 151 CGICMET-------NSK--IVLPNCNHAMCLKCYREW 178
CGICME N + +L NCNH+ C++C R W
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRW 347
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 151 CGICMETNSKIVLP---------NCNHAMCLKCYREW 178
CGICME + P NCNH CLKC R+W
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKW 317
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 14/58 (24%)
Query: 121 QKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
Q +++M R ++ DE+ EC ICM+ ++LP C H+ C KC +W
Sbjct: 138 QASLWMGRLKQPTDED-------------ECCICMDGRVDLILP-CAHSFCQKCIDKW 181
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 151 CGICMETNSKIVLP---------NCNHAMCLKCYREW 178
CGICME + P NCNH CLKC R+W
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKW 317
>sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 OS=Autographa californica nuclear
polyhedrosis virus GN=IAP1 PE=4 SV=1
Length = 286
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 121 QKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNH-AMCLKCY 175
Q ++ + +RDD+ + D DIE + EC +C+E VL C H +C++CY
Sbjct: 209 QNSITVTHVDKRDDDNLNENAD-DIEEKYECKVCLERQRDAVLMPCRHFCVCVQCY 263
>sp|Q3UIR3|DTX3L_MOUSE E3 ubiquitin-protein ligase DTX3L OS=Mus musculus GN=Dtx3l PE=2
SV=1
Length = 748
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 148 EEECGICMET-NSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192
E+ C ICM+T ++K VLP C H C C + + P + VC++S
Sbjct: 566 EDYCVICMDTISNKHVLPKCKHEFCTSCISKAMLIKP-VCPVCLTS 610
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 9/37 (24%)
Query: 151 CGICME-----TNSK----IVLPNCNHAMCLKCYREW 178
CGICME TN +L NC+H+ CLKC R+W
Sbjct: 247 CGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKW 283
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 133 DDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
D+EE+++ E C IC++ + + C H CLKC+ +W
Sbjct: 118 DEEEKKKL-------EIFCSICIQLPERPITTPCGHNFCLKCFEKW 156
>sp|Q8VYZ0|ORTH2_ARATH E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana
GN=ORTH2 PE=1 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREW 178
C CM+ + V C H CLKC+ +W
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKCFEKW 173
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 127 ERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLP---------NCNHAMCLKCYRE 177
E +++ +++ +Q + +E EC +C+E P C+HA C+ C R
Sbjct: 174 EEHKKVCEKKHKQLEALKLSQEIECCVCLERVLSKATPAERKFGLLTECDHAFCIACIRN 233
Query: 178 WYFLSPS 184
W SPS
Sbjct: 234 WRSSSPS 240
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 126 MERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
M + EE ++ D EC IC++ V+ C H C C +W
Sbjct: 1 MASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW 53
>sp|Q8VYC8|RIN2_ARATH E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2
PE=1 SV=1
Length = 578
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 135 EEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
EE R Y D EC IC E +K +CNH L C R W
Sbjct: 328 EELRAYDD-------ECAICREPMAKAKRLHCNHLFHLGCLRSW 364
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 24/70 (34%)
Query: 133 DDEEQRQYTDADIEREEE---------------CGICME-----TNSK----IVLPNCNH 168
D+ ++ ++T A IE E+ CG+CME N +L NC+H
Sbjct: 195 DNNQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSH 254
Query: 169 AMCLKCYREW 178
CLKC R+W
Sbjct: 255 CYCLKCIRKW 264
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 134 DEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW 178
EE R Y D EC IC E +K +CNH L C R W
Sbjct: 327 SEELRDYDD-------ECAICREPMAKAKRLHCNHLFHLGCLRSW 364
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 33.9 bits (76), Expect = 0.75, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 136 EQRQYTDADIEREEECGICM-ETNSKIVLPNCNHAMCLKC 174
E Q ++ I+RE EC +C+ E S I LP + +C KC
Sbjct: 745 ENNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>sp|Q9ZVT8|RF4_ARATH Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana
GN=RF4 PE=3 SV=1
Length = 823
Score = 33.5 bits (75), Expect = 0.86, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 17/73 (23%)
Query: 103 YPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICM-ETNSKI 161
Y ++ L++G ++++ K++++ M + ++RE EC +C+ E S I
Sbjct: 736 YSRIIALKKGSSESKATKRESLGMPK----------------VKRERECVMCLSEEMSVI 779
Query: 162 VLPNCNHAMCLKC 174
LP + +C KC
Sbjct: 780 FLPCAHQVLCFKC 792
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 151 CGICME-----TNSK----IVLPNCNHAMCLKCYREW 178
CG+CME TN +L NC H CLKC R+W
Sbjct: 236 CGVCMEVVFEKTNPSERRFGILSNCCHCYCLKCIRKW 272
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 151 CGICMETNSKIVLPN---------CNHAMCLKCYREW 178
CGICME + P+ CNH CL+C R W
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRW 383
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 139 QYTDADIEREEECGICM----ETNSKIVLPNCNHAMCLKCYREW 178
+YT A +R E+C IC+ E + V+P+C H + C W
Sbjct: 128 RYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTW 171
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 151 CGICMETNSKIVLP---------NCNHAMCLKCYREW 178
CG+CME + P NC+H CLKC R+W
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKW 262
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW 178
EC IC+ET + V+ C H C C +W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW 178
EC IC+ET + V+ C H C C +W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPS 184
EC IC++T+ V+ C H C C +W P+
Sbjct: 40 ECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPN 74
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW 178
EC IC+ET + V+ C H C C +W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q63HN8|RN213_HUMAN E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1
SV=3
Length = 5207
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 38 ACLQM--RMSYSPAAHLFLFLVQ---------WTDCHLAGALGLLRILIYKVYVDGTTTM 86
AC +M R + P+ +L LV+ +D H+ G+ L + +I +V +
Sbjct: 3865 ACTEMLTRNTLKPSPQAWLQLVKNLSMPLELICSDEHMQGSGSLAQAVIREVRAQWSRIF 3924
Query: 87 STH--------ERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQR 138
ST ++ + E ++ + L + + + D K + R + ++
Sbjct: 3925 STALFVEHVLLGTESRVPELQGLVTEHVFLLDKCLRENSDVKTHGPFEAVMRTLCECKET 3984
Query: 139 QYTDADIEREEECGICM-ETNSKIVLPNCNHAMCLKCYREWY 179
+ C IC+ + + LP C+H CL+C R W+
Sbjct: 3985 ASKTLSRFGIQPCSICLGDAKDPVCLP-CDHVHCLRCLRAWF 4025
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S ++F AII +L++ T+++K+K + EE + + +E E +C I
Sbjct: 358 SKKDFEAIIQAKNKELEQ----TKEEKEKV-------QAQKEEVLSHMNDVLENELQCII 406
Query: 154 CMETNSKIVLPNCNHAMCLKCYREW 178
C E + V NC H+ C C EW
Sbjct: 407 CSEYFIEAVTLNCAHSFCSYCINEW 431
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 112 GVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMC 171
G T D + + R EEQ Q A E C IC E+N + + C H +C
Sbjct: 312 GKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLC 371
Query: 172 LKCYREW 178
C W
Sbjct: 372 SCCLAAW 378
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPS 184
EC IC++T V+ C H C C +W P+
Sbjct: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN 72
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPS 184
EC IC++T V+ C H C C +W P+
Sbjct: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN 72
>sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain
LC16m8) GN=p28 PE=3 SV=1
Length = 239
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 164 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 207
>sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0)
GN=p28 PE=3 SV=1
Length = 239
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 164 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 207
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPS 184
EC IC++T V+ C H C C +W P+
Sbjct: 38 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN 72
>sp|Q85318|P28_ECTVM E3 ubiquitin-protein ligase p28 OS=Ectromelia virus (strain Moscow)
GN=p28 PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 166 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 209
>sp|P87607|P28_CWPXG E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain GRI-90
/ Grishak) GN=p28 PE=3 SV=1
Length = 242
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 210
>sp|Q8V571|P28_MONPV E3 ubiquitin-protein ligase p28-like OS=Monkeypox virus GN=p28 PE=3
SV=1
Length = 242
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 210
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPS 184
EC IC++T V+ C H C C +W P+
Sbjct: 40 ECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPN 74
>sp|Q76R05|P28_VAR67 E3 ubiquitin-protein ligase p28-like OS=Variola virus (isolate
Human/India/Ind3/1967) GN=p28 PE=3 SV=1
Length = 242
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 145 IEREEECGICMET-------NSKI--VLPNCNHAMCLKCYREWY 179
+ +E+ECGIC E N + +L +CNH C+ C W+
Sbjct: 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH 210
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S ++F AII +L++ T E +K +A EE + + +E E +C I
Sbjct: 357 SKKDFEAIIQAKNKELEQ--TKEEKEKMQA---------QKEEVLSHMNDVLENELQCII 405
Query: 154 CMETNSKIVLPNCNHAMCLKCYREW 178
C E + V NC H+ C C EW
Sbjct: 406 CSEYFIEAVTLNCAHSFCSYCINEW 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,523,697
Number of Sequences: 539616
Number of extensions: 2676915
Number of successful extensions: 11678
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 11493
Number of HSP's gapped (non-prelim): 256
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)