Query 029528
Match_columns 192
No_of_seqs 253 out of 1255
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 14:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 4.4E-19 9.6E-24 158.0 2.1 173 18-192 2-220 (344)
2 PHA02926 zinc finger-like prot 99.3 9.1E-13 2E-17 111.0 2.4 48 145-192 167-229 (242)
3 PHA02929 N1R/p28-like protein; 99.3 2.6E-12 5.7E-17 109.7 3.2 47 146-192 172-226 (238)
4 PF13639 zf-RING_2: Ring finge 99.2 2.1E-12 4.5E-17 82.5 0.6 39 150-189 2-44 (44)
5 PLN03208 E3 ubiquitin-protein 99.1 1.9E-11 4E-16 101.3 3.0 52 140-191 10-77 (193)
6 PF15227 zf-C3HC4_4: zinc fing 99.1 3.4E-11 7.3E-16 76.8 2.3 38 151-188 1-42 (42)
7 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.4E-11 9.4E-16 74.6 1.7 38 151-188 1-39 (39)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 3.8E-11 8.3E-16 78.7 1.4 44 148-191 2-46 (50)
9 KOG0317 Predicted E3 ubiquitin 99.0 1.7E-10 3.7E-15 100.2 3.4 47 146-192 237-283 (293)
10 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.3E-10 2.9E-15 82.3 2.0 41 149-189 20-73 (73)
11 KOG0823 Predicted E3 ubiquitin 98.9 4.3E-10 9.2E-15 95.1 2.4 45 146-190 45-92 (230)
12 smart00504 Ubox Modified RING 98.9 9.6E-10 2.1E-14 74.3 2.8 43 149-191 2-44 (63)
13 cd00162 RING RING-finger (Real 98.9 8.6E-10 1.9E-14 68.3 2.3 42 150-191 1-44 (45)
14 PF00097 zf-C3HC4: Zinc finger 98.9 7.6E-10 1.7E-14 69.2 1.9 38 151-188 1-41 (41)
15 PF12861 zf-Apc11: Anaphase-pr 98.9 1.3E-09 2.7E-14 79.5 2.5 48 145-192 18-81 (85)
16 COG5243 HRD1 HRD ubiquitin lig 98.8 3.7E-09 8.1E-14 94.9 4.7 45 146-191 285-343 (491)
17 TIGR00599 rad18 DNA repair pro 98.8 2.1E-09 4.6E-14 97.8 3.2 48 144-191 22-69 (397)
18 KOG0320 Predicted E3 ubiquitin 98.8 2.3E-09 4.9E-14 87.7 1.6 42 149-190 132-175 (187)
19 PF14634 zf-RING_5: zinc-RING 98.7 7.7E-09 1.7E-13 66.1 2.1 41 150-190 1-44 (44)
20 smart00184 RING Ring finger. E 98.7 8.4E-09 1.8E-13 61.6 2.0 38 151-188 1-39 (39)
21 KOG4628 Predicted E3 ubiquitin 98.7 6.6E-09 1.4E-13 93.0 2.0 42 149-191 230-276 (348)
22 COG5540 RING-finger-containing 98.6 1.2E-08 2.5E-13 89.7 2.3 45 146-191 321-370 (374)
23 KOG0287 Postreplication repair 98.6 1.5E-08 3.3E-13 90.2 1.2 47 146-192 21-67 (442)
24 PHA03096 p28-like protein; Pro 98.5 5.5E-08 1.2E-12 85.2 3.7 113 54-190 95-231 (284)
25 KOG2164 Predicted E3 ubiquitin 98.5 3.1E-08 6.7E-13 91.9 2.0 44 148-191 186-234 (513)
26 KOG1002 Nucleotide excision re 98.5 2.5E-08 5.3E-13 93.1 0.9 99 79-191 481-584 (791)
27 COG5574 PEX10 RING-finger-cont 98.4 8.4E-08 1.8E-12 82.7 2.3 46 146-191 213-260 (271)
28 KOG0802 E3 ubiquitin ligase [P 98.4 6.8E-08 1.5E-12 91.1 1.3 44 146-190 289-338 (543)
29 COG5432 RAD18 RING-finger-cont 98.4 1.1E-07 2.5E-12 83.2 1.5 46 146-191 23-68 (391)
30 PF04564 U-box: U-box domain; 98.4 1.9E-07 4.2E-12 65.8 1.9 45 147-191 3-48 (73)
31 PF14835 zf-RING_6: zf-RING of 98.3 1.5E-07 3.3E-12 65.2 0.1 43 147-191 6-49 (65)
32 PF13445 zf-RING_UBOX: RING-ty 98.2 4.4E-07 9.5E-12 58.2 0.9 34 151-186 1-43 (43)
33 KOG4172 Predicted E3 ubiquitin 98.2 5.5E-07 1.2E-11 60.6 0.6 44 148-191 7-52 (62)
34 COG5194 APC11 Component of SCF 98.1 9.9E-07 2.1E-11 63.6 1.0 32 161-192 49-80 (88)
35 KOG4265 Predicted E3 ubiquitin 98.0 2.6E-06 5.5E-11 76.3 2.1 46 146-192 288-335 (349)
36 KOG1493 Anaphase-promoting com 98.0 1.1E-06 2.4E-11 62.9 -0.6 45 148-192 20-80 (84)
37 KOG0978 E3 ubiquitin ligase in 97.9 3E-06 6.6E-11 81.7 0.4 44 149-192 644-688 (698)
38 KOG0311 Predicted E3 ubiquitin 97.9 1.6E-06 3.4E-11 77.7 -2.0 47 145-191 40-88 (381)
39 KOG4159 Predicted E3 ubiquitin 97.7 1.9E-05 4.2E-10 72.2 2.1 48 145-192 81-128 (398)
40 KOG0828 Predicted E3 ubiquitin 97.6 2.6E-05 5.7E-10 72.6 1.5 46 146-192 569-633 (636)
41 KOG0297 TNF receptor-associate 97.6 3.2E-05 6.9E-10 70.6 2.1 47 145-191 18-65 (391)
42 PF11793 FANCL_C: FANCL C-term 97.5 1.7E-05 3.7E-10 55.7 -0.4 44 148-191 2-64 (70)
43 KOG1785 Tyrosine kinase negati 97.5 3.7E-05 8.1E-10 70.2 1.4 42 149-190 370-413 (563)
44 KOG0804 Cytoplasmic Zn-finger 97.5 4.2E-05 9.1E-10 70.5 1.1 44 145-190 172-219 (493)
45 COG5219 Uncharacterized conser 97.3 8.8E-05 1.9E-09 73.6 1.0 47 145-191 1466-1521(1525)
46 KOG2879 Predicted E3 ubiquitin 97.2 0.00043 9.4E-09 60.4 4.9 49 143-191 234-285 (298)
47 KOG1734 Predicted RING-contain 97.2 0.00012 2.7E-09 63.7 0.8 43 147-190 223-278 (328)
48 smart00744 RINGv The RING-vari 97.2 0.00018 3.9E-09 47.2 1.3 39 150-189 1-49 (49)
49 COG5152 Uncharacterized conser 97.1 0.0002 4.4E-09 60.1 1.8 42 149-190 197-238 (259)
50 KOG1001 Helicase-like transcri 97.1 0.00018 4E-09 69.8 1.5 107 81-190 389-497 (674)
51 KOG2930 SCF ubiquitin ligase, 97.1 0.00023 5E-09 53.8 1.2 31 161-191 76-106 (114)
52 PF11789 zf-Nse: Zinc-finger o 97.0 0.00024 5.2E-09 48.1 0.9 41 147-187 10-53 (57)
53 KOG1813 Predicted E3 ubiquitin 96.9 0.00036 7.8E-09 61.4 1.0 42 149-190 242-283 (313)
54 KOG4692 Predicted E3 ubiquitin 96.8 0.00081 1.8E-08 60.8 2.8 53 139-191 411-465 (489)
55 KOG0825 PHD Zn-finger protein 96.6 0.0005 1.1E-08 67.3 0.1 47 146-192 121-170 (1134)
56 KOG4275 Predicted E3 ubiquitin 95.8 0.0014 3E-08 57.8 -1.6 39 147-190 299-339 (350)
57 PF14447 Prok-RING_4: Prokaryo 95.1 0.013 2.8E-07 39.5 1.6 43 147-192 6-49 (55)
58 KOG1941 Acetylcholine receptor 95.1 0.0042 9.1E-08 56.9 -1.0 45 144-189 361-412 (518)
59 COG5236 Uncharacterized conser 94.6 0.022 4.8E-07 51.6 2.3 45 146-191 59-106 (493)
60 KOG3039 Uncharacterized conser 94.6 0.021 4.5E-07 49.6 2.0 45 147-191 220-268 (303)
61 PF14570 zf-RING_4: RING/Ubox 94.3 0.038 8.3E-07 36.2 2.4 41 151-191 1-46 (48)
62 KOG2660 Locus-specific chromos 94.2 0.012 2.7E-07 52.5 -0.2 27 164-190 32-58 (331)
63 KOG3002 Zn finger protein [Gen 94.0 0.027 6E-07 49.9 1.6 41 147-191 47-89 (299)
64 PF04641 Rtf2: Rtf2 RING-finge 93.7 0.049 1.1E-06 47.0 2.6 46 146-192 111-160 (260)
65 COG5222 Uncharacterized conser 93.6 0.036 7.8E-07 49.4 1.6 42 149-190 275-318 (427)
66 KOG1814 Predicted E3 ubiquitin 93.5 0.031 6.8E-07 51.4 1.2 43 147-190 183-237 (445)
67 PF05290 Baculo_IE-1: Baculovi 92.9 0.062 1.4E-06 42.5 1.8 45 147-192 79-131 (140)
68 PF10367 Vps39_2: Vacuolar sor 92.7 0.038 8.3E-07 40.3 0.4 36 140-176 70-108 (109)
69 KOG2114 Vacuolar assembly/sort 92.7 0.064 1.4E-06 53.3 2.0 63 125-190 813-880 (933)
70 KOG1952 Transcription factor N 92.4 0.063 1.4E-06 53.3 1.5 44 147-190 190-244 (950)
71 KOG1571 Predicted E3 ubiquitin 92.0 0.087 1.9E-06 47.7 1.8 41 147-190 304-344 (355)
72 KOG1940 Zn-finger protein [Gen 91.8 0.097 2.1E-06 46.0 1.8 42 148-190 158-204 (276)
73 PF10272 Tmpp129: Putative tra 91.6 0.14 3.1E-06 46.5 2.8 23 170-192 315-350 (358)
74 KOG3268 Predicted E3 ubiquitin 90.6 0.16 3.5E-06 42.3 1.9 43 149-191 166-226 (234)
75 PF08746 zf-RING-like: RING-li 90.2 0.23 4.9E-06 31.6 2.0 38 151-188 1-43 (43)
76 PF03854 zf-P11: P-11 zinc fin 90.2 0.096 2.1E-06 34.4 0.2 27 165-191 17-44 (50)
77 KOG0298 DEAD box-containing he 89.8 0.08 1.7E-06 54.7 -0.6 42 147-189 1152-1195(1394)
78 KOG1100 Predicted E3 ubiquitin 88.3 0.23 4.9E-06 41.9 1.2 38 150-191 160-198 (207)
79 KOG0826 Predicted E3 ubiquitin 88.1 0.26 5.7E-06 44.3 1.5 44 147-190 299-343 (357)
80 KOG4362 Transcriptional regula 87.8 0.15 3.3E-06 49.8 -0.2 44 147-190 20-66 (684)
81 KOG2932 E3 ubiquitin ligase in 87.4 0.31 6.8E-06 43.7 1.6 40 149-190 91-131 (389)
82 PF05883 Baculo_RING: Baculovi 87.4 0.23 5.1E-06 39.2 0.7 31 148-179 26-66 (134)
83 PF12906 RINGv: RING-variant d 87.0 0.36 7.8E-06 31.1 1.3 37 151-188 1-47 (47)
84 KOG4445 Uncharacterized conser 86.6 0.16 3.4E-06 45.4 -0.7 29 149-178 116-148 (368)
85 KOG1428 Inhibitor of type V ad 85.2 0.48 1E-05 50.3 1.8 46 145-191 3483-3542(3738)
86 KOG1812 Predicted E3 ubiquitin 83.0 0.67 1.5E-05 42.4 1.6 33 147-180 145-182 (384)
87 PF14569 zf-UDP: Zinc-binding 82.8 1.1 2.3E-05 32.4 2.2 44 148-191 9-60 (80)
88 KOG2034 Vacuolar sorting prote 82.4 0.51 1.1E-05 47.3 0.6 33 145-178 814-849 (911)
89 KOG1815 Predicted E3 ubiquitin 82.0 0.75 1.6E-05 42.7 1.6 36 146-181 68-104 (444)
90 KOG3579 Predicted E3 ubiquitin 81.0 0.65 1.4E-05 41.2 0.7 34 148-181 268-305 (352)
91 KOG0309 Conserved WD40 repeat- 79.1 1.2 2.6E-05 44.3 2.0 27 161-187 1043-1069(1081)
92 PF10571 UPF0547: Uncharacteri 77.9 1.3 2.8E-05 25.3 1.1 21 150-170 2-24 (26)
93 PLN02638 cellulose synthase A 76.2 1.9 4.2E-05 44.3 2.5 44 148-191 17-68 (1079)
94 KOG3970 Predicted E3 ubiquitin 75.8 1.9 4.1E-05 37.2 2.0 46 145-191 47-103 (299)
95 PLN02189 cellulose synthase 73.7 2.1 4.5E-05 43.9 2.0 44 148-191 34-85 (1040)
96 KOG2817 Predicted E3 ubiquitin 71.6 2.9 6.3E-05 38.5 2.3 41 149-190 335-382 (394)
97 smart00647 IBR In Between Ring 71.5 1.2 2.6E-05 29.3 -0.2 20 161-180 41-60 (64)
98 PLN02400 cellulose synthase 70.4 2.7 6E-05 43.3 2.0 44 148-191 36-87 (1085)
99 PHA02825 LAP/PHD finger-like p 68.2 2.8 6.1E-05 34.1 1.3 22 170-191 34-57 (162)
100 PLN02436 cellulose synthase A 67.9 3.3 7.1E-05 42.7 2.0 44 148-191 36-87 (1094)
101 PF07975 C1_4: TFIIH C1-like d 67.5 4 8.8E-05 27.0 1.7 28 162-189 23-50 (51)
102 PF02891 zf-MIZ: MIZ/SP-RING z 66.7 3.6 7.8E-05 26.8 1.4 42 149-191 3-50 (50)
103 KOG3053 Uncharacterized conser 66.7 2.9 6.2E-05 36.7 1.1 46 145-191 17-80 (293)
104 KOG3899 Uncharacterized conser 66.4 3 6.6E-05 37.3 1.3 26 167-192 326-364 (381)
105 KOG0825 PHD Zn-finger protein 62.5 3.8 8.2E-05 41.1 1.2 27 163-189 118-150 (1134)
106 KOG1812 Predicted E3 ubiquitin 62.2 3.1 6.6E-05 38.2 0.5 39 149-188 307-351 (384)
107 TIGR00622 ssl1 transcription f 60.8 8.1 0.00018 29.7 2.5 42 149-190 56-111 (112)
108 PF04216 FdhE: Protein involve 58.1 2.1 4.5E-05 37.4 -1.3 43 148-190 172-219 (290)
109 KOG4718 Non-SMC (structural ma 57.4 5.3 0.00012 34.1 1.1 41 149-189 182-223 (235)
110 PF07191 zinc-ribbons_6: zinc- 54.9 2.1 4.5E-05 30.3 -1.4 38 149-191 2-39 (70)
111 PF06844 DUF1244: Protein of u 53.6 6.7 0.00014 27.5 0.9 12 169-180 11-22 (68)
112 KOG3799 Rab3 effector RIM1 and 49.9 8.2 0.00018 30.9 1.0 48 143-190 60-115 (169)
113 PF01363 FYVE: FYVE zinc finge 49.1 6.6 0.00014 26.5 0.3 32 148-179 9-44 (69)
114 KOG3039 Uncharacterized conser 48.9 16 0.00034 32.1 2.7 33 147-179 42-74 (303)
115 KOG0269 WD40 repeat-containing 48.6 13 0.00029 37.1 2.4 39 149-187 780-820 (839)
116 KOG1829 Uncharacterized conser 47.9 8.1 0.00018 37.4 0.8 40 147-189 510-557 (580)
117 PF02318 FYVE_2: FYVE-type zin 47.4 7.6 0.00016 29.5 0.5 43 147-190 53-102 (118)
118 KOG0801 Predicted E3 ubiquitin 46.8 6.8 0.00015 32.3 0.1 25 147-172 176-204 (205)
119 KOG4185 Predicted E3 ubiquitin 46.5 2.5 5.4E-05 36.6 -2.6 43 148-190 207-264 (296)
120 PRK03564 formate dehydrogenase 46.4 7.5 0.00016 34.8 0.3 44 147-190 186-234 (309)
121 KOG1356 Putative transcription 45.3 5.7 0.00012 40.0 -0.6 44 147-190 228-279 (889)
122 PF01485 IBR: IBR domain; Int 45.0 4.5 9.7E-05 26.4 -1.0 31 150-180 20-60 (64)
123 KOG2068 MOT2 transcription fac 44.9 16 0.00034 33.0 2.1 44 149-192 250-297 (327)
124 PF10497 zf-4CXXC_R1: Zinc-fin 44.3 18 0.00038 27.2 2.0 24 167-190 37-69 (105)
125 TIGR01562 FdhE formate dehydro 43.2 8 0.00017 34.5 0.0 44 148-191 184-233 (305)
126 PF13240 zinc_ribbon_2: zinc-r 43.0 6.2 0.00013 21.7 -0.4 21 171-191 2-22 (23)
127 KOG2113 Predicted RNA binding 43.0 17 0.00037 33.0 2.0 41 147-189 342-383 (394)
128 KOG1609 Protein involved in mR 41.9 13 0.00028 31.9 1.1 44 148-191 78-132 (323)
129 KOG0827 Predicted E3 ubiquitin 40.4 3.1 6.7E-05 38.5 -3.0 43 148-191 196-243 (465)
130 PF14446 Prok-RING_1: Prokaryo 38.1 23 0.0005 23.7 1.6 29 148-176 5-37 (54)
131 PF10146 zf-C4H2: Zinc finger- 37.8 21 0.00045 30.6 1.7 23 170-192 196-218 (230)
132 cd00065 FYVE FYVE domain; Zinc 36.5 24 0.00053 22.6 1.6 31 149-179 3-37 (57)
133 COG5220 TFB3 Cdk activating ki 36.2 9.7 0.00021 33.3 -0.5 28 159-186 27-55 (314)
134 smart00064 FYVE Protein presen 35.5 29 0.00062 23.2 1.8 31 149-179 11-45 (68)
135 KOG3842 Adaptor protein Pellin 32.8 34 0.00074 31.1 2.3 42 146-188 339-409 (429)
136 PF04423 Rad50_zn_hook: Rad50 32.2 15 0.00031 24.0 -0.1 8 184-191 22-29 (54)
137 COG3492 Uncharacterized protei 32.2 19 0.0004 26.9 0.5 12 169-180 42-53 (104)
138 KOG0241 Kinesin-like protein [ 31.7 36 0.00079 35.4 2.5 19 9-27 653-671 (1714)
139 KOG1815 Predicted E3 ubiquitin 31.3 18 0.0004 33.5 0.4 31 150-180 165-198 (444)
140 PF14311 DUF4379: Domain of un 30.9 36 0.00078 22.1 1.7 8 181-188 48-55 (55)
141 KOG4451 Uncharacterized conser 30.0 30 0.00064 30.1 1.4 23 170-192 251-273 (286)
142 KOG2066 Vacuolar assembly/sort 29.8 15 0.00032 36.9 -0.5 33 146-179 782-822 (846)
143 PF05605 zf-Di19: Drought indu 26.8 29 0.00062 22.5 0.6 36 148-190 2-39 (54)
144 PF04710 Pellino: Pellino; In 26.7 21 0.00046 33.1 0.0 43 148-191 328-399 (416)
145 PF13901 DUF4206: Domain of un 25.4 48 0.001 27.5 1.9 38 147-189 151-196 (202)
146 PLN02915 cellulose synthase A 24.8 42 0.00091 34.9 1.6 28 164-191 38-66 (1044)
147 KOG0824 Predicted E3 ubiquitin 24.7 24 0.00053 31.7 -0.0 45 146-190 103-148 (324)
148 COG4357 Zinc finger domain con 24.0 26 0.00057 26.3 0.1 12 149-160 63-74 (105)
149 PF15616 TerY-C: TerY-C metal 23.9 35 0.00076 26.9 0.7 39 146-190 75-113 (131)
150 KOG2807 RNA polymerase II tran 23.6 44 0.00095 30.5 1.4 41 149-189 331-374 (378)
151 PRK04023 DNA polymerase II lar 23.3 52 0.0011 34.2 1.9 40 149-190 627-671 (1121)
152 KOG0802 E3 ubiquitin ligase [P 23.2 40 0.00086 32.1 1.1 41 146-190 477-517 (543)
153 PF08977 BOFC_N: Bypass of For 23.2 51 0.0011 21.9 1.3 32 71-102 1-33 (51)
154 PF14319 Zn_Tnp_IS91: Transpos 22.9 46 0.001 25.1 1.2 30 149-180 43-76 (111)
155 PF02370 M: M protein repeat; 22.9 91 0.002 17.0 2.0 13 14-26 3-15 (21)
156 TIGR03738 PRTRC_C PRTRC system 22.8 91 0.002 21.8 2.5 35 68-106 3-39 (66)
157 KOG1538 Uncharacterized conser 22.1 55 0.0012 32.9 1.8 32 161-192 1037-1076(1081)
158 COG2093 DNA-directed RNA polym 22.0 35 0.00076 23.6 0.3 21 171-191 7-27 (64)
159 COG3813 Uncharacterized protei 21.8 51 0.0011 23.6 1.1 21 167-189 28-48 (84)
160 KOG2113 Predicted RNA binding 21.5 27 0.00058 31.7 -0.4 44 147-190 135-180 (394)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.4e-19 Score=157.98 Aligned_cols=173 Identities=29% Similarity=0.396 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCceEEEEeecCcc-chhhhhhhhhccccccccccceEEEEEEEe-ecCccccchhhh--hh
Q 029528 18 EADIQHANTLASDFPREYDGACLQMRMSYSPA-AHLFLFLVQWTDCHLAGALGLLRILIYKVY-VDGTTTMSTHER--KA 93 (192)
Q Consensus 18 ~~di~~aN~la~~~~~~~~g~~~qm~l~y~~~-a~~~lf~~~w~d~~~~~~~~~~~Iliykvy-~dg~~~~~~~~r--~~ 93 (192)
+.+++++ |.+..+|+++.+..-+||+++++. .....+++.|++.+.+. .|+.++++|..+ .++...++...+ ..
T Consensus 2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~ 79 (344)
T KOG1039|consen 2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLT 79 (344)
T ss_pred ccccccc-hhhhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchh
Confidence 3567788 999999999999999999999998 88888999999999888 889999999998 789988888776 89
Q ss_pred hhhhhhhhhcch---------hhhhcccCCChHHH----------HhhhHHHHhhhcc--------chHhhhccccccCC
Q 029528 94 SIREFYAIIYPS---------LLQLQRGVTDTEDK----------KQKAVYMERYRRR--------DDEEQRQYTDADIE 146 (192)
Q Consensus 94 si~efY~vi~ps---------L~qL~~~i~d~e~r----------~~~~~c~~~~~~~--------~~~~~~~~~~~~~~ 146 (192)
+++.++++.+|+ +.+.+.+..+.... .++..+...+... ..-++++.......
T Consensus 80 ~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s 159 (344)
T KOG1039|consen 80 AIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKS 159 (344)
T ss_pred hhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCcc
Confidence 999999999888 33333333322211 1111111111111 11133455555557
Q ss_pred ccceeccccccccc--------cccCCCCCcccHhhHHHHh--cc-----CCCCCcccccC
Q 029528 147 REEECGICMETNSK--------IVLPNCNHAMCLKCYREWY--FL-----SPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~--------~vL~~C~H~FC~~Ci~~W~--~~-----~~sCP~Cr~~~ 192 (192)
.+.+|+||||.... ++||+|.|.||++||++|. .+ +.+||+||.++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 78999999999754 4679999999999999998 34 57899999875
No 2
>PHA02926 zinc finger-like protein; Provisional
Probab=99.30 E-value=9.1e-13 Score=110.96 Aligned_cols=48 Identities=29% Similarity=0.637 Sum_probs=39.6
Q ss_pred CCccceecccccccc---------ccccCCCCCcccHhhHHHHhccC------CCCCcccccC
Q 029528 145 IEREEECGICMETNS---------KIVLPNCNHAMCLKCYREWYFLS------PSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~---------~~vL~~C~H~FC~~Ci~~W~~~~------~sCP~Cr~~~ 192 (192)
.+++.+|+||||... .++|++|+|.||..||++|.+.+ .+||+||.+|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 356789999999842 37899999999999999998642 4699999875
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.26 E-value=2.6e-12 Score=109.72 Aligned_cols=47 Identities=30% Similarity=0.677 Sum_probs=40.6
Q ss_pred Cccceeccccccccc--------cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSK--------IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~--------~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..+.+|+||+|.+.+ +++++|+|.||..||.+|++++.+||+||.++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 456899999998653 36778999999999999999999999999864
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.22 E-value=2.1e-12 Score=82.49 Aligned_cols=39 Identities=33% Similarity=0.734 Sum_probs=33.7
Q ss_pred eeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 150 ECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 150 ~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
+|+||++.+.. .+++ |+|.||..||.+|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999999852 4566 999999999999999989999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.15 E-value=1.9e-11 Score=101.32 Aligned_cols=52 Identities=23% Similarity=0.578 Sum_probs=42.8
Q ss_pred cccccCCccceeccccccccccccCCCCCcccHhhHHHHhcc----------------CCCCCccccc
Q 029528 140 YTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----------------SPSLLLVCVS 191 (192)
Q Consensus 140 ~~~~~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----------------~~sCP~Cr~~ 191 (192)
...++..++.+|+||++...+++++.|||.||..||.+|+.. ...||+||.+
T Consensus 10 ~~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 10 TTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred ceeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 344456678999999999999877789999999999999731 2479999975
No 6
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.11 E-value=3.4e-11 Score=76.81 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=29.4
Q ss_pred eccccccccccccCCCCCcccHhhHHHHhccC----CCCCcc
Q 029528 151 CGICMETNSKIVLPNCNHAMCLKCYREWYFLS----PSLLLV 188 (192)
Q Consensus 151 C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~----~sCP~C 188 (192)
|+||++.+.++|..+|||+||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999997766799999999999988643 369987
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.08 E-value=4.4e-11 Score=74.64 Aligned_cols=38 Identities=24% Similarity=0.686 Sum_probs=32.5
Q ss_pred ecccccccccc-ccCCCCCcccHhhHHHHhccCCCCCcc
Q 029528 151 CGICMETNSKI-VLPNCNHAMCLKCYREWYFLSPSLLLV 188 (192)
Q Consensus 151 C~ICle~~~~~-vL~~C~H~FC~~Ci~~W~~~~~sCP~C 188 (192)
|+||++.+.++ ++.+|||.||..|+.+|.+.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999986 566799999999999999888899998
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.07 E-value=3.8e-11 Score=78.65 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=38.7
Q ss_pred cceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCccccc
Q 029528 148 EEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+..|.||++...++++.+|||. ||..|+.+|.++...||+||++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 46 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQP 46 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChh
Confidence 5689999999888666569999 9999999999988999999986
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.7e-10 Score=100.23 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=42.1
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+....|.+|||...++..++|||.||..||..|.+.+..||+||.++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 44578999999999977767999999999999999999999999875
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.01 E-value=1.3e-10 Score=82.27 Aligned_cols=41 Identities=27% Similarity=0.610 Sum_probs=33.9
Q ss_pred ceecccccccc-------------ccccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 149 EECGICMETNS-------------KIVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 149 ~~C~ICle~~~-------------~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
..|+||++.+. .++++.|||.||..||.+|++.+.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45999999982 135556999999999999999999999997
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.3e-10 Score=95.11 Aligned_cols=45 Identities=22% Similarity=0.534 Sum_probs=39.8
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhcc---CCCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL---SPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~---~~sCP~Cr~ 190 (192)
....+|.||+|...++|++.|||-||..||.+|+.. ++.||+|+.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKA 92 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccc
Confidence 456899999999999998889999999999999864 558999975
No 12
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.89 E-value=9.6e-10 Score=74.31 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=39.0
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..|+||.+.+.++++..|||+||..||.+|+.....||+|+.+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~ 44 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQP 44 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCC
Confidence 5799999999997777799999999999999888899999876
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.89 E-value=8.6e-10 Score=68.34 Aligned_cols=42 Identities=31% Similarity=0.707 Sum_probs=35.5
Q ss_pred eeccccccccc-cccCCCCCcccHhhHHHHhcc-CCCCCccccc
Q 029528 150 ECGICMETNSK-IVLPNCNHAMCLKCYREWYFL-SPSLLLVCVS 191 (192)
Q Consensus 150 ~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~ 191 (192)
+|+||++.+.. ..+++|+|.||..|+..|.+. ...||.|+.+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999854 455569999999999999987 6689999875
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.88 E-value=7.6e-10 Score=69.18 Aligned_cols=38 Identities=37% Similarity=0.750 Sum_probs=32.9
Q ss_pred eccccccccccc-cCCCCCcccHhhHHHHhc--cCCCCCcc
Q 029528 151 CGICMETNSKIV-LPNCNHAMCLKCYREWYF--LSPSLLLV 188 (192)
Q Consensus 151 C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~--~~~sCP~C 188 (192)
|+||++.+..++ +.+|+|.||..|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999855 566999999999999987 45589998
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.3e-09 Score=79.53 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=38.4
Q ss_pred CCccceecccccccc-------------ccccCCCCCcccHhhHHHHhcc---CCCCCcccccC
Q 029528 145 IEREEECGICMETNS-------------KIVLPNCNHAMCLKCYREWYFL---SPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~-------------~~vL~~C~H~FC~~Ci~~W~~~---~~sCP~Cr~~~ 192 (192)
+.+|+.|+||...+. ..+...|+|+|+..||.+|++. ++.||+||+++
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 345778999988875 1456679999999999999975 35899999864
No 16
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.7e-09 Score=94.92 Aligned_cols=45 Identities=24% Similarity=0.604 Sum_probs=39.1
Q ss_pred Cccceecccccccc--------------ccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 146 EREEECGICMETNS--------------KIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~--------------~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..|..|.||||..- ..-|| |||.++..|++.|.+++++||+||.|
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence 35689999999832 14677 99999999999999999999999987
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=2.1e-09 Score=97.85 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=42.6
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+++....|+||++.+..+++.+|+|.||..||..|+.....||.|+.+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~ 69 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAE 69 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCc
Confidence 456778999999999987777799999999999999877789999975
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-09 Score=87.70 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=38.2
Q ss_pred ceeccccccccc--cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSK--IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~--~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..|+|||+.+.+ ++.++|||.||..||++-.+....||+|++
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~k 175 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRK 175 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCccc
Confidence 679999999886 566889999999999999999999999985
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.70 E-value=7.7e-09 Score=66.14 Aligned_cols=41 Identities=29% Similarity=0.557 Sum_probs=34.2
Q ss_pred eecccccccc---ccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 150 ECGICMETNS---KIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 150 ~C~ICle~~~---~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
.|+||.+.+. .+.+.+|||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999983 2555669999999999998866779999985
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.69 E-value=8.4e-09 Score=61.65 Aligned_cols=38 Identities=29% Similarity=0.718 Sum_probs=32.1
Q ss_pred eccccccccccccCCCCCcccHhhHHHHhc-cCCCCCcc
Q 029528 151 CGICMETNSKIVLPNCNHAMCLKCYREWYF-LSPSLLLV 188 (192)
Q Consensus 151 C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~-~~~sCP~C 188 (192)
|+||++....++..+|+|.||..|+..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999977755555999999999999987 55689987
No 21
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.6e-09 Score=93.01 Aligned_cols=42 Identities=26% Similarity=0.664 Sum_probs=36.5
Q ss_pred ceeccccccccc----cccCCCCCcccHhhHHHHhccCC-CCCccccc
Q 029528 149 EECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSP-SLLLVCVS 191 (192)
Q Consensus 149 ~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~-sCP~Cr~~ 191 (192)
.+|.||+|.+.+ .+|| |+|.||..||..|+.... .||+|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCc
Confidence 399999999985 6788 999999999999997664 69999863
No 22
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=89.68 Aligned_cols=45 Identities=31% Similarity=0.708 Sum_probs=39.1
Q ss_pred Cccceeccccccccc----cccCCCCCcccHhhHHHHhc-cCCCCCccccc
Q 029528 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWYF-LSPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~ 191 (192)
....+|.|||+.+.+ +++| |.|.||..|+.+|.. .+..||+||.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTA 370 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCC
Confidence 344799999999874 7888 999999999999997 57799999986
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.58 E-value=1.5e-08 Score=90.16 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=41.8
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..-..|+||.|.+..+++++|+|+||.-||++++..+..||.|+.++
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 34468999999999977777999999999999999999999998764
No 24
>PHA03096 p28-like protein; Provisional
Probab=98.54 E-value=5.5e-08 Score=85.23 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=75.0
Q ss_pred hhhhhhccccccccccceEEEEE--EE----------eecCccccchhhhhhhhhhhhhhhcchhhhhcccCCChHHHHh
Q 029528 54 LFLVQWTDCHLAGALGLLRILIY--KV----------YVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQ 121 (192)
Q Consensus 54 lf~~~w~d~~~~~~~~~~~Iliy--kv----------y~dg~~~~~~~~r~~si~efY~vi~psL~qL~~~i~d~e~r~~ 121 (192)
.+.+.|-+...|.+..-+ |--| +. ..-|+.+...||..+.+++.|. || ++|.+++.+
T Consensus 95 ~~Ia~WiSp~fAikVs~i-In~y~~~~~~~~~k~~~~c~~g~~c~~lHg~lC~~C~k~~--------Lh--p~d~eqr~~ 163 (284)
T PHA03096 95 PYIAKWISPDFAIKVSKL-INYYNANVYMNVEKDEDNCYKGKYCEYLHGDICDICEKYL--------LH--PTDIKQRYN 163 (284)
T ss_pred HHHHHhcCHHHHHHHHHH-HHHHHhcCceeecChhhhcccccCcHHHHHHHHHhhcchh--------cC--CcCHHHHHH
Confidence 345899987655543321 1111 00 1136777788999999998863 22 577888877
Q ss_pred h-hHHHHhhhccchHhhhccccccCCccceecccccccc--------ccccCCCCCcccHhhHHHHhcc---CCCCCccc
Q 029528 122 K-AVYMERYRRRDDEEQRQYTDADIEREEECGICMETNS--------KIVLPNCNHAMCLKCYREWYFL---SPSLLLVC 189 (192)
Q Consensus 122 ~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~--------~~vL~~C~H~FC~~Ci~~W~~~---~~sCP~Cr 189 (192)
+ +.|+....+.+ . ..+|+||||... .++|++|.|.||..||+.|... ...||.||
T Consensus 164 h~k~c~~~~~~~~----~---------~k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 164 EQKTCLSYQLRLL----L---------SKICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred HHHHHHHHHHHHH----H---------HhhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 7 66766543222 1 168999999854 3899999999999999999854 23566665
Q ss_pred c
Q 029528 190 V 190 (192)
Q Consensus 190 ~ 190 (192)
.
T Consensus 231 ~ 231 (284)
T PHA03096 231 R 231 (284)
T ss_pred c
Confidence 4
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.1e-08 Score=91.86 Aligned_cols=44 Identities=27% Similarity=0.560 Sum_probs=38.2
Q ss_pred cceeccccccccccccCCCCCcccHhhHHHHhcc-----CCCCCccccc
Q 029528 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-----SPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-----~~sCP~Cr~~ 191 (192)
+..||||++....+++++|||.||..||-+++.. -..||+|+.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~ 234 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRST 234 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhh
Confidence 6789999999999988899999999999986643 3489999864
No 26
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.52 E-value=2.5e-08 Score=93.08 Aligned_cols=99 Identities=17% Similarity=0.412 Sum_probs=72.5
Q ss_pred eecCccccchhhhhhhhhhhhhhhcchhhhhcccCCChHHHHhhhHHHHhhhccchHhhhccccccCCccceeccccccc
Q 029528 79 YVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETN 158 (192)
Q Consensus 79 y~dg~~~~~~~~r~~si~efY~vi~psL~qL~~~i~d~e~r~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~ 158 (192)
|.|.+...-.+-...++.++|+.||..+.||+|..++++ +..|++.. ....+...+.+|++|.++.
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~--------LVl~S~~~------n~~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPD--------LVLYSANA------NLPDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcc--------eeeehhhc------CCCccccCceeecccCChh
Confidence 345666666667788999999999999999998877543 23333221 1111234668999999999
Q ss_pred cccccCCCCCcccHhhHHHHhc-----cCCCCCccccc
Q 029528 159 SKIVLPNCNHAMCLKCYREWYF-----LSPSLLLVCVS 191 (192)
Q Consensus 159 ~~~vL~~C~H~FC~~Ci~~W~~-----~~~sCP~Cr~~ 191 (192)
.+.+.+.|.|.||.-|+.++.. ..-+||.|..+
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~ 584 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIG 584 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccc
Confidence 9977777999999999987753 23589999754
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.4e-08 Score=82.73 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=40.0
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHH-HhccCC-CCCccccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYRE-WYFLSP-SLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~-W~~~~~-sCP~Cr~~ 191 (192)
+.+..|.||+|....++...|||.||..||-. |-.++. .||+||+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak 260 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAK 260 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhh
Confidence 56789999999999977777999999999998 987655 59999975
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.8e-08 Score=91.14 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=39.1
Q ss_pred Cccceeccccccccc------cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 146 EREEECGICMETNSK------IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~------~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..+..|.||+|.... ..++ |+|.||..|++.|++++++||+||.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRT 338 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchh
Confidence 346899999999765 5677 9999999999999999999999996
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.38 E-value=1.1e-07 Score=83.21 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=41.9
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..-..|-||-+.+..++++.|||.||.-||+..+..+..||.||.+
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCcccccc
Confidence 3446799999999998888899999999999999999999999976
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.35 E-value=1.9e-07 Score=65.83 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=36.1
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHhcc-CCCCCccccc
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-SPSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~ 191 (192)
++..|+|+.+.+.++|+.++||+|+..||++|+.. ...||+|+.+
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~ 48 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQP 48 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCc
Confidence 35789999999999776669999999999999988 7799999865
No 31
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.28 E-value=1.5e-07 Score=65.20 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=24.1
Q ss_pred ccceeccccccccccc-cCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 147 REEECGICMETNSKIV-LPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+-..|++|.+.+..+| +..|.|+||..||.+-.. ..||+|+.|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~P 49 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTP 49 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCCh
Confidence 4467999999999875 788999999999988544 349999886
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.20 E-value=4.4e-07 Score=58.22 Aligned_cols=34 Identities=38% Similarity=0.732 Sum_probs=20.0
Q ss_pred eccccccccc-----cccCCCCCcccHhhHHHHhccC----CCCC
Q 029528 151 CGICMETNSK-----IVLPNCNHAMCLKCYREWYFLS----PSLL 186 (192)
Q Consensus 151 C~ICle~~~~-----~vL~~C~H~FC~~Ci~~W~~~~----~sCP 186 (192)
|+||.| +.. ++|+ |||+||.+|+.++.+++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 543 5677 99999999999998643 2677
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.5e-07 Score=60.64 Aligned_cols=44 Identities=30% Similarity=0.485 Sum_probs=37.4
Q ss_pred cceeccccccccccccCCCCCc-ccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNSKIVLPNCNHA-MCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
+.+|.||+|...+.||-.|||. +|..|-. .|...+..||+||.|
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRap 52 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAP 52 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhH
Confidence 3789999999999777679998 8999976 466678899999986
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.10 E-value=9.9e-07 Score=63.62 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=28.2
Q ss_pred cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 161 IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++-.-|+|+|+..||.+|++.+..||++|+++
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 45556999999999999999999999999874
No 35
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-06 Score=76.26 Aligned_cols=46 Identities=26% Similarity=0.650 Sum_probs=39.6
Q ss_pred Cccceeccccccccc-cccCCCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSK-IVLPNCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+...+|.|||....+ .||| |.|. .|..|.....-..+.||+||.+.
T Consensus 288 ~~gkeCVIClse~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCcceEEec-chhhehhHhHHHHHHHhhcCCCccccch
Confidence 446899999999998 6777 9998 99999998776678899999873
No 36
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.1e-06 Score=62.88 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=35.7
Q ss_pred cceecccccccc-------------ccccCCCCCcccHhhHHHHhcc---CCCCCcccccC
Q 029528 148 EEECGICMETNS-------------KIVLPNCNHAMCLKCYREWYFL---SPSLLLVCVSS 192 (192)
Q Consensus 148 ~~~C~ICle~~~-------------~~vL~~C~H~FC~~Ci~~W~~~---~~sCP~Cr~~~ 192 (192)
+++|+||.-.+. ..|+.-|.|.|+..||.+|... +..||+||..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 458999987764 1566679999999999999864 34799999864
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3e-06 Score=81.74 Aligned_cols=44 Identities=18% Similarity=0.434 Sum_probs=38.6
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
..|+.|-....+.|++.|+|.||..|+..-.. +...||.|..+|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 68999998888899999999999999997664 566999998876
No 38
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.6e-06 Score=77.66 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=39.1
Q ss_pred CCccceeccccccccc-cccCCCCCcccHhhHHHHhc-cCCCCCccccc
Q 029528 145 IEREEECGICMETNSK-IVLPNCNHAMCLKCYREWYF-LSPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~ 191 (192)
+..+..|+||+++... +..+.|.|.||..||-.-+. ...+||.||+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~ 88 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKK 88 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhh
Confidence 4567899999999987 66778999999999987665 45699999974
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.9e-05 Score=72.19 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=41.4
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+..+.+|.||+..+..+|.++|||+||..||.+-+.....||.||.++
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDEL 128 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccc
Confidence 356789999999999877667999999999999778788999999753
No 40
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.6e-05 Score=72.61 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=36.3
Q ss_pred Cccceecccccccc-----------------c-cccCCCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 146 EREEECGICMETNS-----------------K-IVLPNCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~-----------------~-~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
++...|+|||.... . ++.| |.|.|+..|+.+|+. .+-.||.||.|.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 34467999998753 1 3345 999999999999998 455999999873
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.58 E-value=3.2e-05 Score=70.59 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=42.1
Q ss_pred CCccceeccccccccccccC-CCCCcccHhhHHHHhccCCCCCccccc
Q 029528 145 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~-~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
++++..|+||+.+..+++.+ .|||.||..|+..|...+..||.|+.+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~ 65 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQE 65 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccc
Confidence 56778999999999998873 799999999999999988899999764
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.52 E-value=1.7e-05 Score=55.73 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=21.3
Q ss_pred cceecccccccc-c-----ccc--CCCCCcccHhhHHHHhcc-----------CCCCCccccc
Q 029528 148 EEECGICMETNS-K-----IVL--PNCNHAMCLKCYREWYFL-----------SPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-~-----~vL--~~C~H~FC~~Ci~~W~~~-----------~~sCP~Cr~~ 191 (192)
+.+|+||++... . .+- +.|++.||..|+.+|+.. ...||.|+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 468999998754 1 333 379999999999999742 1259999875
No 43
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.50 E-value=3.7e-05 Score=70.16 Aligned_cols=42 Identities=24% Similarity=0.635 Sum_probs=36.1
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhcc--CCCCCcccc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYFL--SPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~--~~sCP~Cr~ 190 (192)
..|.||-|..+++-..+|||-.|..|+..|... +++||+||.
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 369999999998666669999999999999843 679999985
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.45 E-value=4.2e-05 Score=70.45 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=35.1
Q ss_pred CCccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..+-.+|+||+|.+-. ++...|.|+|+-.|+.+|+. .+||+||-
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~ 219 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRY 219 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhh
Confidence 3456799999998753 34456999999999999975 57999984
No 45
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.27 E-value=8.8e-05 Score=73.64 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=36.9
Q ss_pred CCccceecccccccc--c-----cccCCCCCcccHhhHHHHhcc--CCCCCccccc
Q 029528 145 IEREEECGICMETNS--K-----IVLPNCNHAMCLKCYREWYFL--SPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~--~-----~vL~~C~H~FC~~Ci~~W~~~--~~sCP~Cr~~ 191 (192)
.+.-++|+||..+.. + ...+.|.|.||.+|+.+|... +.+||+||..
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRse 1521 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSE 1521 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccc
Confidence 345579999998754 1 345569999999999999965 4589999964
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00043 Score=60.40 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=37.6
Q ss_pred ccCCccceecccccccccc-ccCCCCCcccHhhHHHHh--ccCCCCCccccc
Q 029528 143 ADIEREEECGICMETNSKI-VLPNCNHAMCLKCYREWY--FLSPSLLLVCVS 191 (192)
Q Consensus 143 ~~~~~~~~C~ICle~~~~~-vL~~C~H~FC~~Ci~~W~--~~~~sCP~Cr~~ 191 (192)
...+.+.+|++|-+..+.| +..+|+|+||-.||..-. ..+.+||.|..+
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~ 285 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGEN 285 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCC
Confidence 3446789999999998873 444499999999998644 345799999653
No 47
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00012 Score=63.75 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=33.9
Q ss_pred ccceeccccccccc-----------cccCCCCCcccHhhHHHHh--ccCCCCCcccc
Q 029528 147 REEECGICMETNSK-----------IVLPNCNHAMCLKCYREWY--FLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~-----------~vL~~C~H~FC~~Ci~~W~--~~~~sCP~Cr~ 190 (192)
+|..|.||-..+-. -.|+ |+|.|+..||+-|- .++++||.|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKe 278 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKE 278 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHH
Confidence 45789999765432 2465 99999999999997 56789999975
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.16 E-value=0.00018 Score=47.18 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=29.2
Q ss_pred eecccccccc---ccccCCCC-----CcccHhhHHHHhccC--CCCCccc
Q 029528 150 ECGICMETNS---KIVLPNCN-----HAMCLKCYREWYFLS--PSLLLVC 189 (192)
Q Consensus 150 ~C~ICle~~~---~~vL~~C~-----H~FC~~Ci~~W~~~~--~sCP~Cr 189 (192)
.|-||++... ..+.| |. |.++..|+.+|...+ .+||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889998222 25556 85 889999999999544 4899994
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.15 E-value=0.0002 Score=60.09 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=36.8
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..|.||-+.+..+|.++|||.||..|...-.+....|-+|.+
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecch
Confidence 689999999999888889999999998876677778998854
No 50
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.12 E-value=0.00018 Score=69.83 Aligned_cols=107 Identities=15% Similarity=0.273 Sum_probs=65.3
Q ss_pred cCccccchhhhhhhhhhhhhhhcchhhhhcccCCChHHHHhhhHHHHhhhccchHhhhccccccCCccceeccccccccc
Q 029528 81 DGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSK 160 (192)
Q Consensus 81 dg~~~~~~~~r~~si~efY~vi~psL~qL~~~i~d~e~r~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~ 160 (192)
++...........++...|+.++-.+++|++.+.+...-.....+.+..........+.. .++..+..|.||++ ...
T Consensus 389 ~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i--~~l~~~~~c~ic~~-~~~ 465 (674)
T KOG1001|consen 389 NSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLI--VDLSVSHWCHICCD-LDS 465 (674)
T ss_pred hhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHH--HHHhhccccccccc-ccc
Confidence 455555556677888899999999999999888765422211111111111110001101 11222279999999 555
Q ss_pred cccCCCCCcccHhhHHHHhcc--CCCCCcccc
Q 029528 161 IVLPNCNHAMCLKCYREWYFL--SPSLLLVCV 190 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~~--~~sCP~Cr~ 190 (192)
.+...|+|.||..|+.+-... ...||.||.
T Consensus 466 ~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~ 497 (674)
T KOG1001|consen 466 FFITRCGHDFCVECLKKSIQQSENAPCPLCRN 497 (674)
T ss_pred ceeecccchHHHHHHHhccccccCCCCcHHHH
Confidence 666679999999999875543 236999985
No 51
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00023 Score=53.76 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.9
Q ss_pred cccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 161 IVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
++-..|+|+|+..||.+|+++.+.||+|.+.
T Consensus 76 VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 3455699999999999999999999999653
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.02 E-value=0.00024 Score=48.10 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=28.3
Q ss_pred ccceecccccccccccc-CCCCCcccHhhHHHHhcc--CCCCCc
Q 029528 147 REEECGICMETNSKIVL-PNCNHAMCLKCYREWYFL--SPSLLL 187 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL-~~C~H~FC~~Ci~~W~~~--~~sCP~ 187 (192)
....|+|.+..+.++|. ..|+|.|.+..|.+|.++ ...||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34789999999999765 489999999999999944 347998
No 53
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00036 Score=61.41 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=37.8
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..|.||.+.+..+|.++|+|.||..|-..-++++..|++|.+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~ 283 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQ 283 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccc
Confidence 569999999999888889999999999887788889999965
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00081 Score=60.78 Aligned_cols=53 Identities=17% Similarity=0.453 Sum_probs=42.5
Q ss_pred ccccccC--CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 139 QYTDADI--EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 139 ~~~~~~~--~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..++.++ .+|..|+||..-....|..+|+|.-|..||.+.+.+.+.|=+|+.+
T Consensus 411 ~~~~~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktT 465 (489)
T KOG4692|consen 411 ESFNKDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTT 465 (489)
T ss_pred HhhcCCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecce
Confidence 3444444 4678999999887776666699999999999999999999999764
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.63 E-value=0.0005 Score=67.26 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=38.8
Q ss_pred Cccceeccccccccc---cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.....|++|+..+.+ ..-..|+|.||..||..|....++||+||..|
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 345679999998875 33345999999999999999999999999764
No 56
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0014 Score=57.84 Aligned_cols=39 Identities=26% Similarity=0.623 Sum_probs=31.0
Q ss_pred ccceeccccccccc-cccCCCCCc-ccHhhHHHHhccCCCCCcccc
Q 029528 147 REEECGICMETNSK-IVLPNCNHA-MCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
.+..|.|||+...+ ..|+ |||. -|.+|-.. -+.||+||+
T Consensus 299 ~~~LC~ICmDaP~DCvfLe-CGHmVtCt~CGkr----m~eCPICRq 339 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLE-CGHMVTCTKCGKR----MNECPICRQ 339 (350)
T ss_pred HHHHHHHHhcCCcceEEee-cCcEEeehhhccc----cccCchHHH
Confidence 36789999999999 5565 9998 78888433 348999985
No 57
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.09 E-value=0.013 Score=39.53 Aligned_cols=43 Identities=26% Similarity=0.500 Sum_probs=32.6
Q ss_pred ccceeccccccccc-cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+..|-.|...-.. +++| |+|..|..|..- .+-+.||+|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~p-CgH~I~~~~f~~--~rYngCPfC~~~~ 49 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLP-CGHLICDNCFPG--ERYNGCPFCGTPF 49 (55)
T ss_pred cceeEEEcccccccccccc-ccceeeccccCh--hhccCCCCCCCcc
Confidence 34678889888776 5665 999999999543 2456899998774
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.06 E-value=0.0042 Score=56.87 Aligned_cols=45 Identities=31% Similarity=0.492 Sum_probs=35.4
Q ss_pred cCCccceecccccccc----c-cccCCCCCcccHhhHHHHhcc--CCCCCccc
Q 029528 144 DIEREEECGICMETNS----K-IVLPNCNHAMCLKCYREWYFL--SPSLLLVC 189 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~----~-~vL~~C~H~FC~~Ci~~W~~~--~~sCP~Cr 189 (192)
+.+.+.-|+.|-|.+- . -.|| |.|+|+.+|..+.+.+ ..+||-||
T Consensus 361 ~~e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 361 VEETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3345678999998753 1 5677 9999999999987743 45999998
No 59
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.59 E-value=0.022 Score=51.60 Aligned_cols=45 Identities=22% Similarity=0.571 Sum_probs=35.9
Q ss_pred Cccceeccccccccc-cccCCCCCcccHhhHHHH--hccCCCCCccccc
Q 029528 146 EREEECGICMETNSK-IVLPNCNHAMCLKCYREW--YFLSPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W--~~~~~sCP~Cr~~ 191 (192)
+++..|.||.+..+- .++| |+|..|--|--+- +-..+.||+||..
T Consensus 59 Een~~C~ICA~~~TYs~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 556789999999886 5666 9999999998653 3457799999863
No 60
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.021 Score=49.57 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=39.3
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
....|+||.+..+. .+|.+|||.||..|.++.......||+|-.|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~p 268 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKP 268 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCc
Confidence 45689999999875 6788899999999999999888899999765
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.31 E-value=0.038 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=20.5
Q ss_pred eccccccccc---cccC-CCCCcccHhhHHHHhc-cCCCCCccccc
Q 029528 151 CGICMETNSK---IVLP-NCNHAMCLKCYREWYF-LSPSLLLVCVS 191 (192)
Q Consensus 151 C~ICle~~~~---~vL~-~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~ 191 (192)
|++|.|.... -..| .|++..|..|..+-.+ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 7889988732 2222 3799999999888775 46789999987
No 62
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.21 E-value=0.012 Score=52.53 Aligned_cols=27 Identities=19% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 164 PNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 164 ~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
+.|-|+||..||-+.+....+||.|..
T Consensus 32 ~eCLHTFCkSCivk~l~~~~~CP~C~i 58 (331)
T KOG2660|consen 32 TECLHTFCKSCIVKYLEESKYCPTCDI 58 (331)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccce
Confidence 459999999999999988999999964
No 63
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.96 E-value=0.027 Score=49.93 Aligned_cols=41 Identities=20% Similarity=0.481 Sum_probs=34.4
Q ss_pred ccceeccccccccccccCCC--CCcccHhhHHHHhccCCCCCccccc
Q 029528 147 REEECGICMETNSKIVLPNC--NHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C--~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+-.+||||.+.+..++.. | ||.-|..|-.+ .+..||.||.+
T Consensus 47 ~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~ 89 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLP 89 (299)
T ss_pred hhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccc
Confidence 347899999999999987 9 69999999653 45689999976
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.71 E-value=0.049 Score=47.03 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=36.7
Q ss_pred Cccceecccccccc----ccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNS----KIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~----~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.....|||....+. .+.+-+|||.|+.+++.+-. .+..||+|-.+|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f 160 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPF 160 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcc
Confidence 45578999998875 25565699999999999874 456899998875
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.59 E-value=0.036 Score=49.42 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=34.2
Q ss_pred ceeccccccccccc-cCCCCCcccHhhHHHHhcc-CCCCCcccc
Q 029528 149 EECGICMETNSKIV-LPNCNHAMCLKCYREWYFL-SPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~ 190 (192)
..|+.|......++ .+.|+|.||..||..-+-. ...||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 78999999988743 4689999999999976644 458999964
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.031 Score=51.41 Aligned_cols=43 Identities=23% Similarity=0.586 Sum_probs=31.8
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHHHhcc--------CCCCCcccc
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWYFL--------SPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~--------~~sCP~Cr~ 190 (192)
....|.||++...- ..+| |+|.||+.|..++... ...||-+.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34689999998763 4555 9999999999987631 236887653
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.92 E-value=0.062 Score=42.47 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=34.5
Q ss_pred ccceeccccccccc-----cccCCCCCcccHhhHHHHhc---cCCCCCcccccC
Q 029528 147 REEECGICMETNSK-----IVLPNCNHAMCLKCYREWYF---LSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci~~W~~---~~~sCP~Cr~~~ 192 (192)
.--+|.||.|.-.+ |- .-||.+.|--|..+-|+ ....||.|+++|
T Consensus 79 ~lYeCnIC~etS~ee~FLKPn-eCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPN-ECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccchhhcCCcc-cccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 44689999998664 32 34899999999987554 355899998765
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.72 E-value=0.038 Score=40.31 Aligned_cols=36 Identities=22% Similarity=0.664 Sum_probs=27.9
Q ss_pred cccccCCccceeccccccccc---cccCCCCCcccHhhHH
Q 029528 140 YTDADIEREEECGICMETNSK---IVLPNCNHAMCLKCYR 176 (192)
Q Consensus 140 ~~~~~~~~~~~C~ICle~~~~---~vL~~C~H~FC~~Ci~ 176 (192)
...+.++++..|++|-..+.. .+.| |||.||..|+.
T Consensus 70 ~~~v~i~~~~~C~vC~k~l~~~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 70 SRSVVITESTKCSVCGKPLGNSVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CceEEECCCCCccCcCCcCCCceEEEeC-CCeEEeccccc
Confidence 334456778889999998764 6677 99999999974
No 69
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=0.064 Score=53.29 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHHhhhccchHhhhccccccCC----ccceeccccccccc-cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 125 YMERYRRRDDEEQRQYTDADIE----REEECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 125 c~~~~~~~~~~~~~~~~~~~~~----~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
-++.+.+.+++....+...... ....|..|--.... .|-=.|||+||.+|.+ .....||.|+.
T Consensus 813 ~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 813 AIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 3566666665544444433222 22589999887765 3444599999999998 34568999974
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.38 E-value=0.063 Score=53.34 Aligned_cols=44 Identities=30% Similarity=0.492 Sum_probs=33.6
Q ss_pred ccceeccccccccc--ccc--CCCCCcccHhhHHHHhccC-------CCCCcccc
Q 029528 147 REEECGICMETNSK--IVL--PNCNHAMCLKCYREWYFLS-------PSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~--~vL--~~C~H~FC~~Ci~~W~~~~-------~sCP~Cr~ 190 (192)
+..+|.||.|.+.. ++. .+|-|.|++.||++|-... -.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 45799999999764 443 3478999999999997421 16999984
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.087 Score=47.66 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=28.7
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
-...|.||++.+...+.-+|||.-| |..--. .-.+||+||.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~ 344 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQ 344 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHH
Confidence 3468999999998855444999855 654322 2335999986
No 72
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.78 E-value=0.097 Score=46.00 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=34.6
Q ss_pred cceeccccccccc-----cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 148 EEECGICMETNSK-----IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 148 ~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
+..|+||.|.... .+++ |||..+.+|++.......+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 4569999998642 5676 9999999999998776699999965
No 73
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.63 E-value=0.14 Score=46.48 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=17.8
Q ss_pred ccHhhHHHHhc-------------cCCCCCcccccC
Q 029528 170 MCLKCYREWYF-------------LSPSLLLVCVSS 192 (192)
Q Consensus 170 FC~~Ci~~W~~-------------~~~sCP~Cr~~~ 192 (192)
-|..|+.+|+. .+-.||+||++|
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 48899989873 134799999986
No 74
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.16 Score=42.28 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=31.5
Q ss_pred ceeccccccccccc-------cCCCCCcccHhhHHHHhcc-----------CCCCCccccc
Q 029528 149 EECGICMETNSKIV-------LPNCNHAMCLKCYREWYFL-----------SPSLLLVCVS 191 (192)
Q Consensus 149 ~~C~ICle~~~~~v-------L~~C~H~FC~~Ci~~W~~~-----------~~sCP~Cr~~ 191 (192)
-.|+||...--+++ -..||..|+.-|+.+|+.. -..||.|..|
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~P 226 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDP 226 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCc
Confidence 46999987644322 2359999999999999852 1379999876
No 75
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.20 E-value=0.23 Score=31.58 Aligned_cols=38 Identities=16% Similarity=0.413 Sum_probs=22.4
Q ss_pred ecccccccccccc-C--CCCCcccHhhHHHHhccCC--CCCcc
Q 029528 151 CGICMETNSKIVL-P--NCNHAMCLKCYREWYFLSP--SLLLV 188 (192)
Q Consensus 151 C~ICle~~~~~vL-~--~C~H~FC~~Ci~~W~~~~~--sCP~C 188 (192)
|.+|.++...++. + .|+=.++..|+..++.+.. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6789998887443 2 4888999999999876543 69987
No 76
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.20 E-value=0.096 Score=34.38 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCC-CcccHhhHHHHhccCCCCCccccc
Q 029528 165 NCN-HAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 165 ~C~-H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
.|+ |-.|.+|+...+.++..||+|..+
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~ 44 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKP 44 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE
T ss_pred eecchhHHHHHHHHHhccccCCCcccCc
Confidence 485 999999999999999999999865
No 77
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.78 E-value=0.08 Score=54.67 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=36.5
Q ss_pred ccceecccccccc-c-cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 147 REEECGICMETNS-K-IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 147 ~~~~C~ICle~~~-~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
+-..|.||++... . ++.. |||.+|..|...|...+..||.|.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~-cgh~~c~~c~~~~l~~~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAG-CGHEPCCRCDELWLYASSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeee-echhHhhhHHHHHHHHhccCcchh
Confidence 4468999999988 3 5554 999999999999999999999996
No 78
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=0.23 Score=41.88 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=28.0
Q ss_pred eeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCccccc
Q 029528 150 ECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 150 ~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
.|-.|-+...-+++-+|.|. +|..|-+. ...||+|+.+
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~ 198 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSP 198 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcCh
Confidence 39999998776444349976 99999432 4579999864
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=0.26 Score=44.31 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=35.2
Q ss_pred ccceeccccccccc-cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 147 REEECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
+...|++|+..... .|+.-=|..||..||-+.....+.||+=..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCC
Confidence 44789999987654 555545999999999999998899998543
No 80
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.80 E-value=0.15 Score=49.78 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.3
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHH---HhccCCCCCcccc
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYRE---WYFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~---W~~~~~sCP~Cr~ 190 (192)
...+|+||.+.+..+++..|.|.||..|+-. |.+....||+|+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~ 66 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKS 66 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhh
Confidence 3478999999999887778999999999864 3333568999974
No 81
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=0.31 Score=43.69 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=27.5
Q ss_pred ceeccccccccc-cccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
.-|.-|--.+.. +-+..|.|.||.+|-+.- ..+.||.|-.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDD 131 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCccc
Confidence 457777666554 333349999999997642 2568999953
No 82
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.37 E-value=0.23 Score=39.21 Aligned_cols=31 Identities=23% Similarity=0.729 Sum_probs=24.1
Q ss_pred cceeccccccccc----cccCCCC------CcccHhhHHHHh
Q 029528 148 EEECGICMETNSK----IVLPNCN------HAMCLKCYREWY 179 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~------H~FC~~Ci~~W~ 179 (192)
..+|.||++.... +.++ |+ |.||..|+.+|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 4689999998764 2344 64 779999999994
No 83
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.02 E-value=0.36 Score=31.15 Aligned_cols=37 Identities=22% Similarity=0.630 Sum_probs=23.6
Q ss_pred eccccccccc---cccCCCCC-----cccHhhHHHHhcc--CCCCCcc
Q 029528 151 CGICMETNSK---IVLPNCNH-----AMCLKCYREWYFL--SPSLLLV 188 (192)
Q Consensus 151 C~ICle~~~~---~vL~~C~H-----~FC~~Ci~~W~~~--~~sCP~C 188 (192)
|-||++.... .+.| |+- ..|..|+.+|... +.+|++|
T Consensus 1 CrIC~~~~~~~~~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688887553 3444 742 4799999999863 4579987
No 84
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.61 E-value=0.16 Score=45.35 Aligned_cols=29 Identities=28% Similarity=0.701 Sum_probs=22.9
Q ss_pred ceeccccccccc----cccCCCCCcccHhhHHHH
Q 029528 149 EECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 149 ~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W 178 (192)
-.|.||+--+.. .+.+ |.|-|+..|+-++
T Consensus 116 gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRy 148 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTA-CDHYMHFACLARY 148 (368)
T ss_pred CceEEEEEeecCCCceeeeh-hHHHHHHHHHHHH
Confidence 579999988764 4554 9999999998544
No 85
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=85.21 E-value=0.48 Score=50.28 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=33.3
Q ss_pred CCccceecccccccc---c-cccCCCCCcccHhhHHH-----Hhcc-----CCCCCccccc
Q 029528 145 IEREEECGICMETNS---K-IVLPNCNHAMCLKCYRE-----WYFL-----SPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~---~-~vL~~C~H~FC~~Ci~~-----W~~~-----~~sCP~Cr~~ 191 (192)
.+.|+.|-||....- . +.|. |+|.|+..|.+. |+.- -.+||+|..+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 345689999987643 2 4565 999999999964 5532 2489999764
No 86
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=0.67 Score=42.44 Aligned_cols=33 Identities=36% Similarity=0.843 Sum_probs=24.4
Q ss_pred ccceecccc-ccccc----cccCCCCCcccHhhHHHHhc
Q 029528 147 REEECGICM-ETNSK----IVLPNCNHAMCLKCYREWYF 180 (192)
Q Consensus 147 ~~~~C~ICl-e~~~~----~vL~~C~H~FC~~Ci~~W~~ 180 (192)
...+|+||. +.... .+ ..|+|.||..|..+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~-~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSV-LKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHH-hcccchhhhHHhHHHhh
Confidence 457899999 44331 34 45999999999987654
No 87
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=82.76 E-value=1.1 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=20.1
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+.--.|+--.|+.|++ +.....+.||.|+++
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 357999988753 23344688889999998 455667899999875
No 88
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.35 E-value=0.51 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.7
Q ss_pred CCccceecccccccc---ccccCCCCCcccHhhHHHH
Q 029528 145 IEREEECGICMETNS---KIVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 145 ~~~~~~C~ICle~~~---~~vL~~C~H~FC~~Ci~~W 178 (192)
++.+++|.+|.-.+- ..+-| |||.|+..|+.+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~-CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFP-CGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcCcceeee-ccchHHHHHHHHH
Confidence 356789999998754 36777 9999999999764
No 89
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=0.75 Score=42.66 Aligned_cols=36 Identities=28% Similarity=0.763 Sum_probs=29.1
Q ss_pred Cccceeccccccccc-cccCCCCCcccHhhHHHHhcc
Q 029528 146 EREEECGICMETNSK-IVLPNCNHAMCLKCYREWYFL 181 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~ 181 (192)
..+.+|+||.+.... .+...|+|.||..|......+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345789999999874 666669999999999887653
No 90
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.01 E-value=0.65 Score=41.24 Aligned_cols=34 Identities=26% Similarity=0.569 Sum_probs=25.4
Q ss_pred cceeccccccccccccCCC----CCcccHhhHHHHhcc
Q 029528 148 EEECGICMETNSKIVLPNC----NHAMCLKCYREWYFL 181 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL~~C----~H~FC~~Ci~~W~~~ 181 (192)
...|.+|.|..++.-.-.| .|.||+.|-++-.+.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 3789999999887211124 799999999987654
No 91
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.07 E-value=1.2 Score=44.31 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.9
Q ss_pred cccCCCCCcccHhhHHHHhccCCCCCc
Q 029528 161 IVLPNCNHAMCLKCYREWYFLSPSLLL 187 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~~~~sCP~ 187 (192)
.+...|+|..+..|...|+.....||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 344469999999999999998888884
No 92
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=77.91 E-value=1.3 Score=25.26 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=13.4
Q ss_pred eeccccccccc--cccCCCCCcc
Q 029528 150 ECGICMETNSK--IVLPNCNHAM 170 (192)
Q Consensus 150 ~C~ICle~~~~--~vL~~C~H~F 170 (192)
.|+-|...... ..-|.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46777666553 4556777776
No 93
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=76.18 E-value=1.9 Score=44.32 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=33.7
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+....|+--.|+.|++ +..+.++.||.|++.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 358999999853 14445588889999997 455678899999865
No 94
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.80 E-value=1.9 Score=37.23 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCccceeccccccccc---cccCCCCCcccHhhHHHHhcc--------CCCCCccccc
Q 029528 145 IEREEECGICMETNSK---IVLPNCNHAMCLKCYREWYFL--------SPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~~--------~~sCP~Cr~~ 191 (192)
.+.+..|..|--.... .-| .|-|.|+.+|+.+|... ...||-|..+
T Consensus 47 sDY~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred cCCCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 3445678888776653 445 49999999999999742 3479999654
No 95
>PLN02189 cellulose synthase
Probab=73.71 E-value=2.1 Score=43.94 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=33.6
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+....|+--.|..|++ +....+++||.|+++
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTR 85 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 358999999853 24455688899999997 344567899999875
No 96
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.60 E-value=2.9 Score=38.51 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=30.3
Q ss_pred ceecccccc----ccccccCCCCCcccHhhHHHHhccC---CCCCcccc
Q 029528 149 EECGICMET----NSKIVLPNCNHAMCLKCYREWYFLS---PSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~----~~~~vL~~C~H~FC~~Ci~~W~~~~---~sCP~Cr~ 190 (192)
..|||=.|- +..+.|+ |||..+.+-+.+-.+.. -.||.|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 689995554 3346676 99999999999876543 36999953
No 97
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=71.47 E-value=1.2 Score=29.29 Aligned_cols=20 Identities=25% Similarity=0.946 Sum_probs=16.3
Q ss_pred cccCCCCCcccHhhHHHHhc
Q 029528 161 IVLPNCNHAMCLKCYREWYF 180 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~ 180 (192)
+.-+.|+|.||..|-..|..
T Consensus 41 v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred eECCCCCCeECCCCCCcCCC
Confidence 44557999999999999864
No 98
>PLN02400 cellulose synthase
Probab=70.37 E-value=2.7 Score=43.25 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=33.4
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+..-.|+---|+.|++ +....+++||.|++.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTr 87 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTR 87 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCc
Confidence 358999999843 13445588889999997 455668899999875
No 99
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=68.24 E-value=2.8 Score=34.12 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.9
Q ss_pred ccHhhHHHHhccC--CCCCccccc
Q 029528 170 MCLKCYREWYFLS--PSLLLVCVS 191 (192)
Q Consensus 170 FC~~Ci~~W~~~~--~sCP~Cr~~ 191 (192)
-|..|+++|...+ .+||+|..+
T Consensus 34 VH~sCL~rWi~~s~~~~CeiC~~~ 57 (162)
T PHA02825 34 VHKECLEEWINTSKNKSCKICNGP 57 (162)
T ss_pred HHHHHHHHHHhcCCCCcccccCCe
Confidence 5689999998654 489999875
No 100
>PLN02436 cellulose synthase A
Probab=67.85 E-value=3.3 Score=42.70 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=33.1
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+....|+--.|..|++ +....+++||.|+++
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 358999999852 24445588889999997 344567899999875
No 101
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=67.46 E-value=4 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=15.5
Q ss_pred ccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 162 VLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 162 vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
.-|.|++.||.+|=.=-...-.+||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 4578999999999543334455899884
No 102
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.66 E-value=3.6 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=19.0
Q ss_pred ceeccccccccccc-cCCCCCcccHhhHHHHhc---cC--CCCCccccc
Q 029528 149 EECGICMETNSKIV-LPNCNHAMCLKCYREWYF---LS--PSLLLVCVS 191 (192)
Q Consensus 149 ~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~---~~--~sCP~Cr~~ 191 (192)
..|+|....+..++ ..+|.|.-|.+ ++.|+. +. -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888888877633 45699997654 233432 22 279999875
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.65 E-value=2.9 Score=36.69 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=33.7
Q ss_pred CCccceeccccccccc-----cccCCCC-----CcccHhhHHHHhccC--------CCCCccccc
Q 029528 145 IEREEECGICMETNSK-----IVLPNCN-----HAMCLKCYREWYFLS--------PSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~-----~vL~~C~-----H~FC~~Ci~~W~~~~--------~sCP~Cr~~ 191 (192)
.+.|..|-||.+.-++ -|-| |. |=.|..|+..|...+ -+||.|++.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 3566789999998765 3555 63 558999999997421 279999863
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=3 Score=37.28 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=19.0
Q ss_pred CCcccHhhHHHHhc-------------cCCCCCcccccC
Q 029528 167 NHAMCLKCYREWYF-------------LSPSLLLVCVSS 192 (192)
Q Consensus 167 ~H~FC~~Ci~~W~~-------------~~~sCP~Cr~~~ 192 (192)
.-..|..|+.+|.. ++-+||+||+.|
T Consensus 326 rp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 326 RPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred ccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 44567889988862 345899999864
No 105
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=62.47 E-value=3.8 Score=41.14 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=21.2
Q ss_pred cCCCCCcccHhhHHHHhcc------CCCCCccc
Q 029528 163 LPNCNHAMCLKCYREWYFL------SPSLLLVC 189 (192)
Q Consensus 163 L~~C~H~FC~~Ci~~W~~~------~~sCP~Cr 189 (192)
+.+|+|.||..||..|..+ .-.|++|.
T Consensus 118 ~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred hhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 3469999999999999853 23688884
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.23 E-value=3.1 Score=38.16 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=29.1
Q ss_pred ceeccccccccc------cccCCCCCcccHhhHHHHhccCCCCCcc
Q 029528 149 EECGICMETNSK------IVLPNCNHAMCLKCYREWYFLSPSLLLV 188 (192)
Q Consensus 149 ~~C~ICle~~~~------~vL~~C~H~FC~~Ci~~W~~~~~sCP~C 188 (192)
..|++|.-.... ++-. |+|-||..|..+|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 568888776542 5666 99999999999998766655443
No 107
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.78 E-value=8.1 Score=29.67 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=32.0
Q ss_pred ceecccccccccc--------------ccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSKI--------------VLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~--------------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..|--|+..+..+ .-+.|.+.||.+|=.=+.+.-.+||-|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 4588888766532 25789999999998777777778999963
No 108
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=58.06 E-value=2.1 Score=37.38 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=22.9
Q ss_pred cceecccccccccccc-C----CCCCcccHhhHHHHhccCCCCCcccc
Q 029528 148 EEECGICMETNSKIVL-P----NCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL-~----~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
...||||-......++ . .=.|-+|.-|-.+|.-....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 3689999998764222 1 13678999999999988889999954
No 109
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=57.37 E-value=5.3 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=34.4
Q ss_pred ceeccccccccc-cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 149 EECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 149 ~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
.+|.+|.+..-. .-..+|+=.++..|+....++...||.|.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 689999998765 44566888899999999998888999993
No 110
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.91 E-value=2.1 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=17.2
Q ss_pred ceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..||.|...+...- +|.+|..|-.+. .....||.|..+
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~-~~~a~CPdC~~~ 39 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDY-KKEAFCPDCGQP 39 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EE-EEEEE-TTT-SB
T ss_pred CcCCCCCCccEEeC----CEEECccccccc-eecccCCCcccH
Confidence 46777777643211 666777775543 223457777654
No 111
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=53.61 E-value=6.7 Score=27.47 Aligned_cols=12 Identities=33% Similarity=1.207 Sum_probs=8.4
Q ss_pred cccHhhHHHHhc
Q 029528 169 AMCLKCYREWYF 180 (192)
Q Consensus 169 ~FC~~Ci~~W~~ 180 (192)
-||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999974
No 112
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.86 E-value=8.2 Score=30.89 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=28.2
Q ss_pred ccCCccceecccccc-ccccccCCC---CCcccHhhHHHHhccCC----CCCcccc
Q 029528 143 ADIEREEECGICMET-NSKIVLPNC---NHAMCLKCYREWYFLSP----SLLLVCV 190 (192)
Q Consensus 143 ~~~~~~~~C~ICle~-~~~~vL~~C---~H~FC~~Ci~~W~~~~~----sCP~Cr~ 190 (192)
...+++.+|.||+.. |.+++--+| .-.||-+|-.+-..+++ .|-.|+.
T Consensus 60 aGv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred cccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 456788999999986 445432223 33467777554333322 4777764
No 113
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=49.07 E-value=6.6 Score=26.51 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=17.3
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHHHh
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYREWY 179 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~ 179 (192)
...|.+|...|.. ---..||+.||.+|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4679999999863 3445699999999986543
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.94 E-value=16 Score=32.09 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=28.0
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHh
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWY 179 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~ 179 (192)
.-..|+.|+..+.++|..+=||.||+.||-+..
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 336899999999998877789999999997754
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.60 E-value=13 Score=37.08 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=30.9
Q ss_pred ceeccccccccc--cccCCCCCcccHhhHHHHhccCCCCCc
Q 029528 149 EECGICMETNSK--IVLPNCNHAMCLKCYREWYFLSPSLLL 187 (192)
Q Consensus 149 ~~C~ICle~~~~--~vL~~C~H~FC~~Ci~~W~~~~~sCP~ 187 (192)
..|.+|.-+..- .--+-|+|.-|..|+.+|+.....||.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888777653 445679999999999999988777776
No 116
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=47.90 E-value=8.1 Score=37.44 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=24.6
Q ss_pred ccceecccccccc------c--cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 147 REEECGICMETNS------K--IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 147 ~~~~C~ICle~~~------~--~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
....|.+|...-. + .--..|++.||..|. ...+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~---~r~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCL---RRKSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHH---hccCCCCCchH
Confidence 4467888843311 1 112238999999994 34555699993
No 117
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=47.42 E-value=7.6 Score=29.47 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=27.1
Q ss_pred ccceeccccccccc-----cccCCCCCcccHhhHHHHhccCC--CCCcccc
Q 029528 147 REEECGICMETNSK-----IVLPNCNHAMCLKCYREWYFLSP--SLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci~~W~~~~~--sCP~Cr~ 190 (192)
.+..|.+|...+.. .+-..|.|.+|.+|-.. ..+.. -|.+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56799999987542 45677999999999544 11111 4777653
No 118
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.81 E-value=6.8 Score=32.27 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=18.6
Q ss_pred ccceeccccccccc----cccCCCCCcccH
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCL 172 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~ 172 (192)
+.-||.||+|.... .-|| |-.+|++
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 44799999999874 5677 8766654
No 119
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.46 E-value=2.5 Score=36.58 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=32.2
Q ss_pred cceecccccccc-------ccccCC-------CCCcccHhhHHHHhccC-CCCCcccc
Q 029528 148 EEECGICMETNS-------KIVLPN-------CNHAMCLKCYREWYFLS-PSLLLVCV 190 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~-------C~H~FC~~Ci~~W~~~~-~sCP~Cr~ 190 (192)
+..|.||...+. ..++.. |+|..|..|+..-..+. ..||+|+.
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 367999988765 144444 99999999998765443 58999975
No 120
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.45 E-value=7.5 Score=34.81 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=33.0
Q ss_pred ccceecccccccccccc-----CCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 147 REEECGICMETNSKIVL-----PNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL-----~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
....|++|-....-.++ ..=.|-.|.-|-.+|.-....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45789999988653221 212466899999999988889999965
No 121
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=45.26 E-value=5.7 Score=39.95 Aligned_cols=44 Identities=30% Similarity=0.738 Sum_probs=32.2
Q ss_pred ccceeccccccccc--cccCCCCCcccHhhHHHHh--c----cCCCCCcccc
Q 029528 147 REEECGICMETNSK--IVLPNCNHAMCLKCYREWY--F----LSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~--~vL~~C~H~FC~~Ci~~W~--~----~~~sCP~Cr~ 190 (192)
....|..|.-.... -+.+.|+|.+|..|++.|. . ....|++|+.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 34679999887553 6778899999999999994 1 1236777653
No 122
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=45.00 E-value=4.5 Score=26.37 Aligned_cols=31 Identities=29% Similarity=0.700 Sum_probs=19.0
Q ss_pred eecc--ccccccc--------cccCCCCCcccHhhHHHHhc
Q 029528 150 ECGI--CMETNSK--------IVLPNCNHAMCLKCYREWYF 180 (192)
Q Consensus 150 ~C~I--Cle~~~~--------~vL~~C~H~FC~~Ci~~W~~ 180 (192)
-|+- |-..+.. +.-+.|++.||..|-..|..
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESCT
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccCC
Confidence 5665 6665431 34566999999999988854
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=44.88 E-value=16 Score=33.03 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=33.3
Q ss_pred ceecccccccc--c-cccC-CCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 149 EECGICMETNS--K-IVLP-NCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 149 ~~C~ICle~~~--~-~vL~-~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..|+||-+... + ..+| +|++..|+.|...-.....+||.||++.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 57999999753 2 2222 3888899999887777788999999763
No 124
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=44.31 E-value=18 Score=27.22 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=17.8
Q ss_pred CCcccHhhHHHHhcc---------CCCCCcccc
Q 029528 167 NHAMCLKCYREWYFL---------SPSLLLVCV 190 (192)
Q Consensus 167 ~H~FC~~Ci~~W~~~---------~~sCP~Cr~ 190 (192)
.=.||..|+..+... .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999876532 226999984
No 125
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=43.19 E-value=8 Score=34.53 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=32.8
Q ss_pred cceecccccccccccc------CCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 148 EEECGICMETNSKIVL------PNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL------~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
...|+||-....-.++ ..=.|-+|.-|-.+|.-....||.|..+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 3589999998754222 1123679999999999888899999653
No 126
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=43.03 E-value=6.2 Score=21.69 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=10.8
Q ss_pred cHhhHHHHhccCCCCCccccc
Q 029528 171 CLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 171 C~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
|..|-.+-......||.|-.+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 444433333445567777554
No 127
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=43.03 E-value=17 Score=32.96 Aligned_cols=41 Identities=7% Similarity=-0.265 Sum_probs=31.5
Q ss_pred ccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCccc
Q 029528 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr 189 (192)
...+|-.|-+...-.++..|+|+ ||..|-. ...+.+||.|-
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~ 383 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCD 383 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccCCcccccc
Confidence 34689999887766566669999 8999876 45567899995
No 128
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.88 E-value=13 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.449 Sum_probs=31.1
Q ss_pred cceeccccccccc----cccCCCC-----CcccHhhHHHHhc--cCCCCCccccc
Q 029528 148 EEECGICMETNSK----IVLPNCN-----HAMCLKCYREWYF--LSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~-----H~FC~~Ci~~W~~--~~~sCP~Cr~~ 191 (192)
+..|-||.+.... ....+|. +..+..|+..|.. .+..|.+|...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~ 132 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSF 132 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccc
Confidence 4789999997542 2233364 3468999999997 45589999764
No 129
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=3.1 Score=38.51 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=34.4
Q ss_pred cceeccccccccc-----cccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 148 EEECGICMETNSK-----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
...|+||-+.... ..+- |||.+...|+++|+.....||.|+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~re 243 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRE 243 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhh
Confidence 3679999887653 3444 99999999999999887789988753
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=38.13 E-value=23 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.631 Sum_probs=23.9
Q ss_pred cceecccccccc--c--cccCCCCCcccHhhHH
Q 029528 148 EEECGICMETNS--K--IVLPNCNHAMCLKCYR 176 (192)
Q Consensus 148 ~~~C~ICle~~~--~--~vL~~C~H~FC~~Ci~ 176 (192)
...|.+|-+.+. + ++-|.|+=.+++.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 357999999985 2 6789999999999954
No 131
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.83 E-value=21 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.3
Q ss_pred ccHhhHHHHhccCCCCCcccccC
Q 029528 170 MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 170 FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
-|..|..+-..+-..||+|...|
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccc
Confidence 58999988877788999998754
No 132
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=36.50 E-value=24 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred ceeccccccccc----cccCCCCCcccHhhHHHHh
Q 029528 149 EECGICMETNSK----IVLPNCNHAMCLKCYREWY 179 (192)
Q Consensus 149 ~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~ 179 (192)
..|.+|...+.. .--..||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888776543 3445699999999987654
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=36.16 E-value=9.7 Score=33.28 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=23.1
Q ss_pred cccccCCCCCcccHhhHHHHhccCC-CCC
Q 029528 159 SKIVLPNCNHAMCLKCYREWYFLSP-SLL 186 (192)
Q Consensus 159 ~~~vL~~C~H~FC~~Ci~~W~~~~~-sCP 186 (192)
...+-|.|-|.+|-.|+.+-+.+.+ .||
T Consensus 27 k~linPECyHrmCESCvdRIFs~GpAqCP 55 (314)
T COG5220 27 KILINPECYHRMCESCVDRIFSRGPAQCP 55 (314)
T ss_pred EEEECHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3456778999999999999877655 899
No 134
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.79 E-value=34 Score=31.14 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=0.0
Q ss_pred Cccceecccccccc--------------------ccccCCCCCcccHhhHHHHhcc---------CCCCCcc
Q 029528 146 EREEECGICMETNS--------------------KIVLPNCNHAMCLKCYREWYFL---------SPSLLLV 188 (192)
Q Consensus 146 ~~~~~C~ICle~~~--------------------~~vL~~C~H~FC~~Ci~~W~~~---------~~sCP~C 188 (192)
..+.+|++|+.+-. -...| |||.-=.+=..-|.+. ...||+|
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC 409 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFC 409 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcch
No 136
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.20 E-value=15 Score=23.95 Aligned_cols=8 Identities=13% Similarity=-0.135 Sum_probs=2.9
Q ss_pred CCCccccc
Q 029528 184 SLLLVCVS 191 (192)
Q Consensus 184 sCP~Cr~~ 191 (192)
.||+|..+
T Consensus 22 ~CPlC~r~ 29 (54)
T PF04423_consen 22 CCPLCGRP 29 (54)
T ss_dssp E-TTT--E
T ss_pred cCCCCCCC
Confidence 56666544
No 137
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.16 E-value=19 Score=26.91 Aligned_cols=12 Identities=33% Similarity=1.198 Sum_probs=10.3
Q ss_pred cccHhhHHHHhc
Q 029528 169 AMCLKCYREWYF 180 (192)
Q Consensus 169 ~FC~~Ci~~W~~ 180 (192)
-||..|+.+|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999974
No 138
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.67 E-value=36 Score=35.45 Aligned_cols=19 Identities=47% Similarity=0.599 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 029528 9 SFKDSLKVLEADIQHANTL 27 (192)
Q Consensus 9 ~~~~~~k~l~~di~~aN~l 27 (192)
-|+.||+.|.+||-+||+|
T Consensus 653 mf~~SL~rLr~~iv~AN~L 671 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTL 671 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999988
No 139
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.34 E-value=18 Score=33.49 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=20.9
Q ss_pred eecccccc---ccccccCCCCCcccHhhHHHHhc
Q 029528 150 ECGICMET---NSKIVLPNCNHAMCLKCYREWYF 180 (192)
Q Consensus 150 ~C~ICle~---~~~~vL~~C~H~FC~~Ci~~W~~ 180 (192)
.|+-..+. ....|.-.|+|.||..|...|..
T Consensus 165 ~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 165 GCGLAVKFGSLESVEVDCGCGHEFCFACGEESHS 198 (444)
T ss_pred CCCceeeccCCCccceeCCCCchhHhhccccccC
Confidence 45555553 22355566999999999977753
No 140
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=30.88 E-value=36 Score=22.07 Aligned_cols=8 Identities=0% Similarity=-0.238 Sum_probs=5.7
Q ss_pred cCCCCCcc
Q 029528 181 LSPSLLLV 188 (192)
Q Consensus 181 ~~~sCP~C 188 (192)
+...||.|
T Consensus 48 ~~~~CP~C 55 (55)
T PF14311_consen 48 RGKGCPYC 55 (55)
T ss_pred CCCCCCCC
Confidence 45578887
No 141
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=29.95 E-value=30 Score=30.06 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=18.7
Q ss_pred ccHhhHHHHhccCCCCCcccccC
Q 029528 170 MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 170 FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
-|..|..+-......||+|...|
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcc
Confidence 58889888777788999997653
No 142
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.79 E-value=15 Score=36.90 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=25.2
Q ss_pred Cccceecccccccc--------ccccCCCCCcccHhhHHHHh
Q 029528 146 EREEECGICMETNS--------KIVLPNCNHAMCLKCYREWY 179 (192)
Q Consensus 146 ~~~~~C~ICle~~~--------~~vL~~C~H~FC~~Ci~~W~ 179 (192)
..+..|.-|.+..- .+|+- |+|+|+..|+..-.
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~ 822 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMES 822 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHH
Confidence 34458999999864 26665 99999999997544
No 143
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.78 E-value=29 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=18.9
Q ss_pred cceeccccccccccccCCCCCcccHhhHHHHhc--cCCCCCcccc
Q 029528 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWYF--LSPSLLLVCV 190 (192)
Q Consensus 148 ~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~--~~~sCP~Cr~ 190 (192)
...||.|-+.+....| ..-|...... +...||+|..
T Consensus 2 ~f~CP~C~~~~~~~~L-------~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL-------VEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH-------HHHHHhHCcCCCCCccCCCchh
Confidence 3578888884443332 2233333332 2347998864
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=26.73 E-value=21 Score=33.10 Aligned_cols=43 Identities=16% Similarity=0.448 Sum_probs=0.0
Q ss_pred cceecccccccc--------------c------cccCCCCCcccHhhHHHHhcc---------CCCCCccccc
Q 029528 148 EEECGICMETNS--------------K------IVLPNCNHAMCLKCYREWYFL---------SPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~--------------~------~vL~~C~H~FC~~Ci~~W~~~---------~~sCP~Cr~~ 191 (192)
+.+|++|+.+-. + ...| |||.-=.+..+-|.+. +.-||+|-.+
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~ 399 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATP 399 (416)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCc
Confidence 578999997621 1 2344 9997767777788652 2369999654
No 145
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=25.37 E-value=48 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=26.6
Q ss_pred ccceecccccccc-----c---cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 147 REEECGICMETNS-----K---IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 147 ~~~~C~ICle~~~-----~---~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
....|.||-+.-. . ..-+.|+-.||..|.. +..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 3467999986411 1 3456799999999954 26799994
No 146
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.83 E-value=42 Score=34.85 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 164 PNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 164 ~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
-.|+-..|..|++ +....+++||.|+++
T Consensus 38 ~eC~fpvCr~cyeye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 38 HVCGFPVCKPCYEYERSEGNQCCPQCNTR 66 (1044)
T ss_pred ccCCCccccchhhhhhhcCCccCCccCCc
Confidence 3488889999996 444567899999865
No 147
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=24 Score=31.66 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=35.9
Q ss_pred Cccceeccccccccccc-cCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 146 EREEECGICMETNSKIV-LPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..+..|-||......+. ..+|.|-||..|-..|......||.|+.
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~ 148 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRG 148 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhc
Confidence 34568999998877643 3459999999999999988888888864
No 148
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.00 E-value=26 Score=26.35 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=8.6
Q ss_pred ceeccccccccc
Q 029528 149 EECGICMETNSK 160 (192)
Q Consensus 149 ~~C~ICle~~~~ 160 (192)
..|++|....+.
T Consensus 63 iiCGvC~~~LT~ 74 (105)
T COG4357 63 IICGVCRKLLTR 74 (105)
T ss_pred EEhhhhhhhhhH
Confidence 578888877653
No 149
>PF15616 TerY-C: TerY-C metal binding domain
Probab=23.91 E-value=35 Score=26.87 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=29.2
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
.....||-|-......+-. |++.||..= ....+||.|..
T Consensus 75 ~g~PgCP~CGn~~~fa~C~-CGkl~Ci~g-----~~~~~CPwCg~ 113 (131)
T PF15616_consen 75 IGAPGCPHCGNQYAFAVCG-CGKLFCIDG-----EGEVTCPWCGN 113 (131)
T ss_pred cCCCCCCCCcChhcEEEec-CCCEEEeCC-----CCCEECCCCCC
Confidence 3447899999998888875 999999721 12348999965
No 150
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.61 E-value=44 Score=30.47 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=27.6
Q ss_pred ceeccccccccc---cccCCCCCcccHhhHHHHhccCCCCCccc
Q 029528 149 EECGICMETNSK---IVLPNCNHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 149 ~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
.-|-.|.+.... ..-+.|.|.||.+|=.=-.+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 348888555443 34567999999999654444445799885
No 151
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.28 E-value=52 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred ceeccccccccccccCCCCC-----cccHhhHHHHhccCCCCCcccc
Q 029528 149 EECGICMETNSKIVLPNCNH-----AMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H-----~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
..|+=|-........|+||. .||.+| .+......||-|..
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~ 671 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGR 671 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCC
Confidence 57999988866677788984 499999 33333457999964
No 152
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.24 E-value=40 Score=32.15 Aligned_cols=41 Identities=22% Similarity=0.605 Sum_probs=30.8
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
+.+..|.||.+.. ....++|. ...|.++|...+..||.|+.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~ 517 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHT 517 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCch
Confidence 3457899999988 43333477 56778889988889999975
No 153
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=23.23 E-value=51 Score=21.87 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=21.3
Q ss_pred eEEEEEEEeecCccccch-hhhhhhhhhhhhhh
Q 029528 71 LRILIYKVYVDGTTTMST-HERKASIREFYAII 102 (192)
Q Consensus 71 ~~Iliykvy~dg~~~~~~-~~r~~si~efY~vi 102 (192)
+.|.+-++|.||....-. .+...|+.+|.+-+
T Consensus 1 ~~V~Ler~YlDGevseE~~~Eti~s~ed~w~~Y 33 (51)
T PF08977_consen 1 MTVILERVYLDGEVSEEIKEETIWSMEDFWAKY 33 (51)
T ss_dssp EEEEEEEE-SSS-EEEEEEEEEEEEHHHHHHHS
T ss_pred CEEEEEEEEecCceeEEEEEeeeccHHHHHHhh
Confidence 357788999999965433 56778888886544
No 154
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.93 E-value=46 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=20.9
Q ss_pred ceeccccccccccccCCCCCcccHhhH----HHHhc
Q 029528 149 EECGICMETNSKIVLPNCNHAMCLKCY----REWYF 180 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~~C~H~FC~~Ci----~~W~~ 180 (192)
..|.=|-... .+--+|+|.+|..|- ++|..
T Consensus 43 ~~C~~Cg~~~--~~~~SCk~R~CP~C~~~~~~~W~~ 76 (111)
T PF14319_consen 43 YRCEDCGHEK--IVYNSCKNRHCPSCQAKATEQWIE 76 (111)
T ss_pred eecCCCCceE--EecCcccCcCCCCCCChHHHHHHH
Confidence 5677776655 333459999999996 46764
No 155
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.93 E-value=91 Score=16.96 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 029528 14 LKVLEADIQHANT 26 (192)
Q Consensus 14 ~k~l~~di~~aN~ 26 (192)
=|.||||.|.+++
T Consensus 3 kk~lEa~~qkLe~ 15 (21)
T PF02370_consen 3 KKQLEADHQKLEA 15 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4789999887765
No 156
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=22.81 E-value=91 Score=21.78 Aligned_cols=35 Identities=34% Similarity=0.662 Sum_probs=23.5
Q ss_pred ccceEEEEEEE--eecCccccchhhhhhhhhhhhhhhcchh
Q 029528 68 LGLLRILIYKV--YVDGTTTMSTHERKASIREFYAIIYPSL 106 (192)
Q Consensus 68 ~~~~~Iliykv--y~dg~~~~~~~~r~~si~efY~vi~psL 106 (192)
.++.|+.+|+- ..|..+.++. -.+++||+..+|.|
T Consensus 3 ~~l~RvF~~~gi~L~DP~p~~sp----e~V~dfYs~~YPeL 39 (66)
T TIGR03738 3 TTLSRVFTYNGVRLADPSPAMSP----EQVRDFYSAQYPEL 39 (66)
T ss_pred eeEEEEEEECCeEcCCCCCCCCH----HHHHHHHhccCchh
Confidence 45677777652 2355555543 45889999999987
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.06 E-value=55 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=23.8
Q ss_pred cccCCCCCcccHhhHHHHhc--------cCCCCCcccccC
Q 029528 161 IVLPNCNHAMCLKCYREWYF--------LSPSLLLVCVSS 192 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~--------~~~sCP~Cr~~~ 192 (192)
-++|+=.-++|..|..-+.. ++..||+||+++
T Consensus 1037 NilPd~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~ 1076 (1081)
T KOG1538|consen 1037 NLLPDASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSK 1076 (1081)
T ss_pred hhCCcchhhhCchHHhhhccchhhHHHHhcCCCCcccccc
Confidence 46777777899999865432 467899999864
No 158
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=21.99 E-value=35 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=10.9
Q ss_pred cHhhHHHHhccCCCCCccccc
Q 029528 171 CLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 171 C~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
|.+|.+---.....||.|..+
T Consensus 7 C~~Ck~l~~~d~e~CP~Cgs~ 27 (64)
T COG2093 7 CKNCKRLTPEDTEICPVCGST 27 (64)
T ss_pred HhhccccCCCCCccCCCCCCc
Confidence 555543322333458888654
No 159
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.77 E-value=51 Score=23.63 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=15.9
Q ss_pred CCcccHhhHHHHhccCCCCCccc
Q 029528 167 NHAMCLKCYREWYFLSPSLLLVC 189 (192)
Q Consensus 167 ~H~FC~~Ci~~W~~~~~sCP~Cr 189 (192)
-|+||..|.+.-+ ...||-|-
T Consensus 28 EcTFCadCae~~l--~g~CPnCG 48 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCG 48 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCC
Confidence 4889999988643 45789884
No 160
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.48 E-value=27 Score=31.73 Aligned_cols=44 Identities=7% Similarity=-0.067 Sum_probs=32.9
Q ss_pred ccceeccccccccccccCCCCCc-ccHhhHHHH-hccCCCCCcccc
Q 029528 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREW-YFLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W-~~~~~sCP~Cr~ 190 (192)
....|.+|.+......+-+|+|. ||..|.-+- .++..+||+|..
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~t 180 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQT 180 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhh
Confidence 34679999998777555569998 999996543 466778999853
Done!