Query 029528
Match_columns 192
No_of_seqs 253 out of 1255
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.4 8.7E-14 3E-18 90.6 3.5 47 146-192 3-53 (55)
2 3ng2_A RNF4, snurf, ring finge 99.4 1.1E-13 3.9E-18 94.2 1.9 48 145-192 7-61 (71)
3 4ayc_A E3 ubiquitin-protein li 99.4 1.2E-13 4.3E-18 106.5 1.6 47 146-192 51-97 (138)
4 2ecy_A TNF receptor-associated 99.3 7.7E-13 2.6E-17 89.4 4.7 49 144-192 11-60 (66)
5 2djb_A Polycomb group ring fin 99.3 4.4E-13 1.5E-17 92.2 3.4 49 144-192 11-60 (72)
6 2ea6_A Ring finger protein 4; 99.3 2.7E-13 9.4E-18 91.5 2.3 48 145-192 12-66 (69)
7 2csy_A Zinc finger protein 183 99.3 5.2E-13 1.8E-17 93.8 3.0 48 145-192 12-59 (81)
8 1t1h_A Gspef-atpub14, armadill 99.3 4.8E-13 1.6E-17 93.0 2.7 48 145-192 5-53 (78)
9 2yur_A Retinoblastoma-binding 99.3 6.2E-13 2.1E-17 92.2 3.2 48 144-191 11-61 (74)
10 2ecl_A Ring-box protein 2; RNF 99.3 6.8E-13 2.3E-17 93.9 3.1 46 147-192 14-74 (81)
11 2d8t_A Dactylidin, ring finger 99.3 5.8E-13 2E-17 91.4 2.6 47 146-192 13-59 (71)
12 2egp_A Tripartite motif-contai 99.3 8.2E-13 2.8E-17 91.7 3.4 49 144-192 8-63 (79)
13 3ztg_A E3 ubiquitin-protein li 99.3 9.4E-13 3.2E-17 94.3 3.7 48 144-191 9-59 (92)
14 3lrq_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 98.9 1.1 48 145-192 19-68 (100)
15 2xeu_A Ring finger protein 4; 99.3 4E-13 1.4E-17 89.4 1.4 46 147-192 2-54 (64)
16 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.6E-17 89.4 3.8 49 144-192 16-67 (73)
17 2ecm_A Ring finger and CHY zin 99.3 8.2E-13 2.8E-17 85.8 2.4 46 147-192 4-53 (55)
18 2ecn_A Ring finger protein 141 99.3 5.5E-13 1.9E-17 90.9 1.1 46 145-191 12-57 (70)
19 1v87_A Deltex protein 2; ring- 99.3 1.9E-12 6.7E-17 96.0 4.1 46 147-192 24-92 (114)
20 1chc_A Equine herpes virus-1 r 99.3 1.4E-12 4.7E-17 88.3 2.5 46 147-192 4-50 (68)
21 2ep4_A Ring finger protein 24; 99.3 1.6E-12 5.5E-17 89.5 2.8 47 145-192 12-62 (74)
22 2ecw_A Tripartite motif-contai 99.3 2.1E-12 7.1E-17 90.2 3.3 49 144-192 15-69 (85)
23 2ct2_A Tripartite motif protei 99.3 1.9E-12 6.4E-17 91.4 2.9 48 144-191 11-65 (88)
24 2ysj_A Tripartite motif-contai 99.3 2.8E-12 9.6E-17 85.8 3.5 45 144-188 16-63 (63)
25 2ect_A Ring finger protein 126 99.3 2.3E-12 7.8E-17 89.6 3.2 47 145-192 12-62 (78)
26 2ecj_A Tripartite motif-contai 99.2 5E-12 1.7E-16 82.7 4.2 44 145-188 12-58 (58)
27 2ecv_A Tripartite motif-contai 99.2 3.5E-12 1.2E-16 89.0 3.7 49 144-192 15-69 (85)
28 2ckl_A Polycomb group ring fin 99.2 1.5E-12 5.2E-17 96.1 1.8 48 145-192 12-60 (108)
29 2y43_A E3 ubiquitin-protein li 99.2 1.5E-12 5E-17 94.7 1.6 47 146-192 20-67 (99)
30 1x4j_A Ring finger protein 38; 99.2 2.5E-12 8.4E-17 89.0 2.6 46 146-192 21-70 (75)
31 2l0b_A E3 ubiquitin-protein li 99.2 2.6E-12 8.9E-17 92.6 2.9 47 145-192 37-87 (91)
32 2kiz_A E3 ubiquitin-protein li 99.2 2.8E-12 9.7E-17 87.1 2.8 47 145-192 11-61 (69)
33 3fl2_A E3 ubiquitin-protein li 99.2 1.4E-12 4.9E-17 98.5 1.4 48 145-192 49-97 (124)
34 2kr4_A Ubiquitin conjugation f 99.2 2.8E-12 9.6E-17 91.7 2.6 49 144-192 10-58 (85)
35 1g25_A CDK-activating kinase a 99.2 4.4E-12 1.5E-16 85.4 2.7 45 148-192 3-53 (65)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 5.3E-12 1.8E-16 94.7 2.1 47 146-192 5-58 (133)
37 2kre_A Ubiquitin conjugation f 99.2 7.9E-12 2.7E-16 92.2 2.9 48 145-192 26-73 (100)
38 1wgm_A Ubiquitin conjugation f 99.2 1.2E-11 4.3E-16 90.8 3.4 49 144-192 18-67 (98)
39 3l11_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 94.4 0.9 48 145-192 12-60 (115)
40 1jm7_A BRCA1, breast cancer ty 99.2 7.2E-12 2.5E-16 92.3 1.8 47 146-192 19-68 (112)
41 1e4u_A Transcriptional repress 99.2 2.6E-11 8.8E-16 85.8 4.6 49 144-192 7-60 (78)
42 3hct_A TNF receptor-associated 99.1 1.2E-11 4.1E-16 92.9 2.3 49 144-192 14-63 (118)
43 3dpl_R Ring-box protein 1; ubi 99.1 1.8E-11 6.3E-16 91.4 2.9 46 147-192 36-99 (106)
44 1z6u_A NP95-like ring finger p 99.1 9.6E-12 3.3E-16 97.8 1.4 48 145-192 75-123 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.1 1E-11 3.5E-16 92.6 1.0 48 145-192 20-68 (116)
46 2ckl_B Ubiquitin ligase protei 99.1 1.5E-11 5.1E-16 97.1 1.6 47 145-191 51-99 (165)
47 1jm7_B BARD1, BRCA1-associated 99.1 1.5E-11 5.2E-16 92.1 1.1 45 146-192 20-65 (117)
48 3knv_A TNF receptor-associated 99.1 2.1E-11 7.3E-16 94.9 1.8 48 144-191 27-75 (141)
49 2c2l_A CHIP, carboxy terminus 99.1 5.1E-11 1.8E-15 99.5 2.9 49 144-192 204-253 (281)
50 2vje_A E3 ubiquitin-protein li 99.0 4.7E-11 1.6E-15 81.0 1.9 47 146-192 6-55 (64)
51 1bor_A Transcription factor PM 99.0 7E-11 2.4E-15 77.8 1.9 44 146-192 4-47 (56)
52 4ap4_A E3 ubiquitin ligase RNF 99.0 5.2E-11 1.8E-15 89.2 1.4 47 146-192 70-123 (133)
53 4a0k_B E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 91.1 0.2 46 147-192 47-110 (117)
54 4ic3_A E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 82.7 0.1 43 146-192 22-65 (74)
55 2vje_B MDM4 protein; proto-onc 99.0 1.4E-10 4.8E-15 78.4 1.7 46 147-192 6-54 (63)
56 2yu4_A E3 SUMO-protein ligase 98.9 1.6E-10 5.6E-15 83.8 1.3 46 145-190 4-58 (94)
57 3hcs_A TNF receptor-associated 98.9 2.4E-10 8.2E-15 90.5 2.1 48 144-191 14-62 (170)
58 2y1n_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 101.7 2.9 46 147-192 331-377 (389)
59 2f42_A STIP1 homology and U-bo 98.9 6.7E-10 2.3E-14 90.1 3.5 49 144-192 102-151 (179)
60 2ecg_A Baculoviral IAP repeat- 98.9 5.1E-10 1.7E-14 77.7 1.3 43 146-192 23-66 (75)
61 2d8s_A Cellular modulator of i 98.8 8.4E-10 2.9E-14 78.4 2.1 46 146-192 13-68 (80)
62 2ct0_A Non-SMC element 1 homol 98.8 5E-09 1.7E-13 73.6 3.9 45 147-191 14-61 (74)
63 2yho_A E3 ubiquitin-protein li 98.8 9.1E-10 3.1E-14 77.7 -0.1 43 146-192 16-59 (79)
64 3htk_C E3 SUMO-protein ligase 98.7 3.7E-09 1.3E-13 90.5 2.0 46 146-191 179-229 (267)
65 2ea5_A Cell growth regulator w 98.7 9.1E-09 3.1E-13 70.6 3.2 42 146-191 13-55 (68)
66 1wim_A KIAA0161 protein; ring 98.5 2E-08 6.9E-13 72.2 1.7 45 147-191 4-61 (94)
67 3t6p_A Baculoviral IAP repeat- 98.5 9.9E-09 3.4E-13 90.8 0.0 43 146-192 293-336 (345)
68 2bay_A PRE-mRNA splicing facto 98.5 2.8E-08 9.4E-13 67.0 0.7 44 149-192 4-48 (61)
69 3k1l_B Fancl; UBC, ring, RWD, 98.2 1.8E-07 6.1E-12 83.0 1.0 45 147-191 307-370 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1.2E-06 4.1E-11 58.7 3.7 46 146-192 4-57 (60)
71 3vk6_A E3 ubiquitin-protein li 98.0 3E-06 1E-10 62.6 2.6 42 150-192 3-47 (101)
72 3nw0_A Non-structural maintena 97.4 7.8E-05 2.7E-09 62.6 3.3 44 148-191 180-226 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.5 0.0012 4.1E-08 47.3 2.5 33 147-179 2-38 (101)
74 2ko5_A Ring finger protein Z; 90.3 0.09 3.1E-06 38.2 1.2 43 147-191 27-70 (99)
75 1weo_A Cellulose synthase, cat 89.4 0.4 1.4E-05 34.4 4.0 44 148-191 16-67 (93)
76 2lri_C Autoimmune regulator; Z 87.4 0.41 1.4E-05 32.1 2.8 44 147-190 11-58 (66)
77 2cs3_A Protein C14ORF4, MY039 84.4 0.57 1.9E-05 33.2 2.4 34 147-180 14-51 (93)
78 3m62_A Ubiquitin conjugation f 83.4 0.69 2.4E-05 45.7 3.5 48 144-191 887-935 (968)
79 2jmo_A Parkin; IBR, E3 ligase, 83.4 0.17 5.7E-06 35.1 -0.7 21 165-187 55-75 (80)
80 2l5u_A Chromodomain-helicase-D 83.1 0.72 2.4E-05 30.2 2.4 46 145-190 8-57 (61)
81 1mm2_A MI2-beta; PHD, zinc fin 78.3 0.82 2.8E-05 29.9 1.4 46 146-191 7-56 (61)
82 1z60_A TFIIH basal transcripti 77.0 2.3 8E-05 28.0 3.3 40 149-188 16-58 (59)
83 2lbm_A Transcriptional regulat 74.7 4.4 0.00015 31.1 4.9 46 145-190 60-116 (142)
84 2yql_A PHD finger protein 21A; 71.6 0.67 2.3E-05 29.7 -0.4 46 145-190 6-55 (56)
85 3ql9_A Transcriptional regulat 68.2 7.7 0.00026 29.3 4.8 45 146-190 55-110 (129)
86 1wil_A KIAA1045 protein; ring 65.0 7.8 0.00027 27.5 4.0 34 145-178 12-47 (89)
87 1xwh_A Autoimmune regulator; P 63.7 1.2 4.1E-05 29.4 -0.4 45 146-190 6-54 (66)
88 1wd2_A Ariadne-1 protein homol 61.6 2.1 7.2E-05 28.0 0.5 34 149-182 7-48 (60)
89 2zet_C Melanophilin; complex, 60.6 3.6 0.00012 31.9 1.8 29 147-175 67-100 (153)
90 2pv0_B DNA (cytosine-5)-methyl 60.2 8.7 0.0003 34.2 4.4 52 123-180 74-127 (386)
91 1fp0_A KAP-1 corepressor; PHD 59.7 4 0.00014 28.9 1.7 45 146-190 23-71 (88)
92 3a1b_A DNA (cytosine-5)-methyl 58.8 5.4 0.00019 31.3 2.5 36 146-181 77-114 (159)
93 2puy_A PHD finger protein 21A; 58.1 1.7 6E-05 28.0 -0.4 44 147-190 4-51 (60)
94 2ct7_A Ring finger protein 31; 57.2 1.1 3.9E-05 31.1 -1.5 18 161-178 44-61 (86)
95 2ysm_A Myeloid/lymphoid or mix 56.7 3.9 0.00013 29.4 1.2 43 146-188 5-54 (111)
96 2l43_A N-teminal domain from h 54.1 4.1 0.00014 28.5 1.0 46 145-190 22-74 (88)
97 1zbd_B Rabphilin-3A; G protein 53.2 4.5 0.00016 30.6 1.2 31 146-176 53-88 (134)
98 2d8v_A Zinc finger FYVE domain 51.0 5.9 0.0002 26.7 1.3 33 146-179 6-39 (67)
99 3t7l_A Zinc finger FYVE domain 47.7 8.6 0.00029 26.8 1.8 31 148-178 20-54 (90)
100 1joc_A EEA1, early endosomal a 47.1 8.6 0.00029 28.5 1.8 30 149-178 70-103 (125)
101 2yw8_A RUN and FYVE domain-con 46.6 9.1 0.00031 26.1 1.8 30 148-177 19-52 (82)
102 1z2q_A LM5-1; membrane protein 46.4 9.7 0.00033 26.1 1.9 32 147-178 20-55 (84)
103 2o35_A Hypothetical protein DU 45.3 7.1 0.00024 28.4 1.1 11 170-180 43-53 (105)
104 2ku3_A Bromodomain-containing 45.2 5.5 0.00019 26.8 0.5 46 145-190 13-65 (71)
105 1vfy_A Phosphatidylinositol-3- 45.2 10 0.00034 25.3 1.8 29 149-177 12-44 (73)
106 3fyb_A Protein of unknown func 44.8 7.3 0.00025 28.3 1.1 11 170-180 42-52 (104)
107 1f62_A Transcription factor WS 44.7 11 0.00039 23.0 1.9 41 150-190 2-49 (51)
108 2yt5_A Metal-response element- 44.6 7 0.00024 25.3 0.9 45 146-190 4-60 (66)
109 2gmg_A Hypothetical protein PF 43.4 6.6 0.00023 28.8 0.7 26 161-191 68-93 (105)
110 3asl_A E3 ubiquitin-protein li 43.4 5.9 0.0002 26.5 0.4 43 150-192 20-70 (70)
111 2e6r_A Jumonji/ARID domain-con 41.2 4.2 0.00014 28.6 -0.7 47 144-190 12-65 (92)
112 3ask_A E3 ubiquitin-protein li 41.0 6.8 0.00023 32.3 0.5 44 148-191 174-225 (226)
113 3zyq_A Hepatocyte growth facto 40.3 10 0.00035 30.7 1.4 32 147-178 163-198 (226)
114 1x4u_A Zinc finger, FYVE domai 39.4 13 0.00043 25.5 1.6 30 148-177 14-47 (84)
115 1dvp_A HRS, hepatocyte growth 39.1 10 0.00035 30.4 1.2 31 147-177 160-194 (220)
116 2k16_A Transcription initiatio 36.6 14 0.00048 24.4 1.5 44 147-190 17-67 (75)
117 1wfk_A Zinc finger, FYVE domai 34.8 15 0.00051 25.5 1.4 30 148-177 9-42 (88)
118 1y02_A CARP2, FYVE-ring finger 34.4 15 0.00052 27.2 1.4 30 148-177 19-52 (120)
119 4gne_A Histone-lysine N-methyl 33.6 20 0.00068 26.0 1.9 32 145-176 12-45 (107)
120 2csz_A Synaptotagmin-like prot 33.3 17 0.00058 25.0 1.4 30 146-175 23-57 (76)
121 2fiy_A Protein FDHE homolog; F 31.9 6.3 0.00022 33.9 -1.2 45 146-190 180-230 (309)
122 2e6s_A E3 ubiquitin-protein li 31.3 9.4 0.00032 26.0 -0.2 42 149-190 27-76 (77)
123 3v43_A Histone acetyltransfera 29.8 48 0.0017 23.6 3.5 30 147-176 4-42 (112)
124 1weu_A Inhibitor of growth fam 29.4 28 0.00094 24.5 2.0 44 146-190 34-84 (91)
125 1wen_A Inhibitor of growth fam 28.1 25 0.00085 23.4 1.5 44 146-190 14-64 (71)
126 2a20_A Regulating synaptic mem 27.0 3.8 0.00013 27.2 -2.7 45 146-190 7-59 (62)
127 1we9_A PHD finger family prote 25.7 14 0.00046 23.7 -0.2 45 146-190 4-57 (64)
128 1wev_A Riken cDNA 1110020M19; 24.8 11 0.00038 26.1 -0.8 44 147-190 15-71 (88)
129 3mpx_A FYVE, rhogef and PH dom 24.0 16 0.00056 31.5 0.0 32 148-179 375-410 (434)
130 3mjh_B Early endosome antigen 23.3 21 0.00072 20.7 0.4 14 147-160 4-17 (34)
131 2kwj_A Zinc finger protein DPF 22.7 34 0.0012 24.6 1.5 29 149-177 2-40 (114)
132 3c6w_A P28ING5, inhibitor of g 22.2 16 0.00054 23.5 -0.4 44 146-190 7-57 (59)
133 2jrp_A Putative cytoplasmic pr 22.0 9.2 0.00031 26.7 -1.6 9 150-158 4-12 (81)
134 2vnf_A ING 4, P29ING4, inhibit 21.2 22 0.00077 22.7 0.2 43 147-190 9-58 (60)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.41 E-value=8.7e-14 Score=90.56 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=40.6
Q ss_pred Cccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+.. .+++.|+|.||..||.+|.+++.+||+||.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 456789999999875 45666999999999999999989999999863
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.37 E-value=1.1e-13 Score=94.18 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=41.2
Q ss_pred CCccceecccccccccc-------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~-------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+++.+|+||++.+.++ ++.+|||.||..||.+|++.+.+||+||.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 45668999999998764 5556999999999999998889999999863
No 3
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=1.2e-13 Score=106.54 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=41.6
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+.++++.+|||+||..||.+|+..+.+||+||.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 45678999999999876666999999999999999999999999863
No 4
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-13 Score=89.44 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=41.5
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
.++++.+|+||++.+.+++..+|||.||..||.+|+. ....||+||.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 3456789999999999876667999999999999994 556899999863
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.4e-13 Score=92.23 Aligned_cols=49 Identities=16% Similarity=0.393 Sum_probs=41.9
Q ss_pred cCCccceeccccccccccc-cCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIV-LPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++++.+|+||++.+.+++ +++|+|.||..||.+|++.+..||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3456789999999998854 446999999999999998888999999863
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=91.50 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=41.0
Q ss_pred CCccceecccccccccc-------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~-------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..++.+|+||++.+.++ ++.+|||.||..||.+|+..+.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 45668999999998763 5556999999999999998888999999864
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.2e-13 Score=93.76 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=41.9
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+++.+|+||++.+.++++.+|||.||..||.+|+.....||+||.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 345679999999999876666999999999999998888999999863
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=4.8e-13 Score=93.05 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=41.8
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhcc-CCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-SPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~~ 192 (192)
+.++..|+||++.+.+++..+|||+||..||.+|+.. +.+||+||.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 5667899999999999766569999999999999986 67899999863
No 9
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=6.2e-13 Score=92.19 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=40.9
Q ss_pred cCCccceeccccccccccccCC-CCCcccHhhHHHHhccC--CCCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWYFLS--PSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~-C~H~FC~~Ci~~W~~~~--~sCP~Cr~~ 191 (192)
++.++..|+||++.+.+++..+ |||+||..||.+|+..+ ..||+||.+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 3566789999999999866555 99999999999999754 589999986
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.8e-13 Score=93.91 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=38.2
Q ss_pred ccceeccccccccc---------------cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSK---------------IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~---------------~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++.+|+||++.+.. .++++|+|.||..||.+|++++.+||+||+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 34678888887743 36667999999999999999999999999864
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.8e-13 Score=91.39 Aligned_cols=47 Identities=26% Similarity=0.465 Sum_probs=40.9
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.++.+|+||++.+.+++..+|+|.||..||.+|......||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 45678999999998865445999999999999998888999999863
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=8.2e-13 Score=91.65 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=41.3
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhcc-------CCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-------SPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-------~~sCP~Cr~~~ 192 (192)
.++++.+|+||++.+.+++..+|||+||..||.+|+.. ...||+||.++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35677899999999998655569999999999999876 55899999863
No 13
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=9.4e-13 Score=94.27 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=40.9
Q ss_pred cCCccceeccccccccccccCC-CCCcccHhhHHHHhccC--CCCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWYFLS--PSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~-C~H~FC~~Ci~~W~~~~--~sCP~Cr~~ 191 (192)
++.++..|+||++.+.+++..+ |||+||..||.+|+..+ ..||+||.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 3567789999999999976656 99999999999998643 589999986
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=98.90 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=41.8
Q ss_pred CCccceecccccccccccc-CCCCCcccHhhHHHHhccC-CCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVL-PNCNHAMCLKCYREWYFLS-PSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL-~~C~H~FC~~Ci~~W~~~~-~sCP~Cr~~~ 192 (192)
++++..|+||++.+.+++. .+|||.||..||.+|+..+ ..||+||.++
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 3456899999999999766 7799999999999999877 6999999864
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=4e-13 Score=89.38 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=39.3
Q ss_pred ccceecccccccccc-------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSKI-------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~-------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++.+|+||++.+.++ ++.+|||.||..|+.+|++.+.+||+||.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 356899999998763 5556999999999999998888999999863
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=89.38 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=40.8
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhc---cCCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYF---LSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~---~~~sCP~Cr~~~ 192 (192)
+++++.+|+||++.+.+++..+|||.||..||.+|++ ....||+||.++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 3466789999999999865446999999999999996 355899999863
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=8.2e-13 Score=85.75 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=38.8
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++.+|+||++.+.. +++.+|+|.||..||.+|+..+.+||+||.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 45789999999743 44445999999999999998889999999864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.5e-13 Score=90.92 Aligned_cols=46 Identities=33% Similarity=0.814 Sum_probs=40.5
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..++.+|+||++.+.+.+++ |+|.||..||.+|+.+..+||+||.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 57 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQ 57 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEET-TTEEECHHHHHHSSCCCSSCHHHHHC
T ss_pred CCCCCCCeeCCcCccCcccC-CCCcccHHHHHHHHHCcCcCCCcCCc
Confidence 45668999999999885555 99999999999999988899999976
No 19
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.28 E-value=1.9e-12 Score=96.04 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=37.4
Q ss_pred ccceeccccccccccc------------------cCCCCCcccHhhHHHHh-----ccCCCCCcccccC
Q 029528 147 REEECGICMETNSKIV------------------LPNCNHAMCLKCYREWY-----FLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~v------------------L~~C~H~FC~~Ci~~W~-----~~~~sCP~Cr~~~ 192 (192)
.+.+|+||++.+..++ +.+|+|.||..||.+|+ ..+.+||+||.++
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 4569999999985432 44599999999999999 4566999999864
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=1.4e-12 Score=88.31 Aligned_cols=46 Identities=33% Similarity=0.657 Sum_probs=39.4
Q ss_pred ccceecccccccccc-ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSKI-VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~-vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+.+|+||++.+.++ +..+|||.||..|+.+|..++.+||+||.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456899999998873 4445999999999999998889999999763
No 21
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.6e-12 Score=89.49 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=39.7
Q ss_pred CCccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+.+.+|+||++.+.. .+++ |+|.||..||.+|++.+.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 4566899999999864 3345 999999999999998888999999863
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=2.1e-12 Score=90.18 Aligned_cols=49 Identities=29% Similarity=0.478 Sum_probs=41.2
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhcc------CCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL------SPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~------~~sCP~Cr~~~ 192 (192)
+++++.+|+||++.+.++++.+|+|.||..|+.+|+.. ...||+||.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 34567899999999998665569999999999999876 56899999763
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=91.43 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=40.5
Q ss_pred cCCccceeccccccccc----cccCCCCCcccHhhHHHHhccC---CCCCccccc
Q 029528 144 DIEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLS---PSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~---~sCP~Cr~~ 191 (192)
.++++.+|+||++.+.+ +++.+|||.||..|+.+|+..+ ..||+||.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 34567899999999886 6555699999999999999765 689999985
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-12 Score=85.75 Aligned_cols=45 Identities=29% Similarity=0.475 Sum_probs=38.2
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhc---cCCCCCcc
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYF---LSPSLLLV 188 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~---~~~sCP~C 188 (192)
.++++.+|+||++.+.+++..+|||.||..||.+|++ ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567789999999999866556999999999999997 45589998
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.25 E-value=2.3e-12 Score=89.55 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=39.7
Q ss_pred CCccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..++.+|+||++.+.. .+++ |+|.||..||.+|++.+.+||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 4566899999999864 2355 999999999999999889999999863
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=82.70 Aligned_cols=44 Identities=23% Similarity=0.637 Sum_probs=37.3
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhc---cCCCCCcc
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYF---LSPSLLLV 188 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~---~~~sCP~C 188 (192)
+.++.+|+||++.+.++++.+|+|.||..||.+|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999999866566999999999999954 45689998
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=88.98 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=41.2
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhcc------CCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL------SPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~------~~sCP~Cr~~~ 192 (192)
+++++.+|+||++.+.+++..+|||.||..|+.+|+.. ...||+||.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 34567899999999988655569999999999999866 67999999763
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=1.5e-12 Score=96.14 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=41.7
Q ss_pred CCccceecccccccccccc-CCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVL-PNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL-~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++++..|+||++.+.+++. ++|||+||..||.+|+..+..||+||.++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 4567899999999998654 36999999999999999889999999763
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.5e-12 Score=94.69 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=40.7
Q ss_pred Cccceeccccccccccc-cCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIV-LPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+.+++ +++|||.||..||.+|+..+..||+||.++
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 45679999999999864 436999999999999999888999999863
No 30
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-12 Score=89.00 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=39.5
Q ss_pred Cccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+.. .+++ |+|.||..||.+|++.+.+||+||.++
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 456799999999765 4466 999999999999998888999999863
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-12 Score=92.57 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=40.0
Q ss_pred CCccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+++.+|+||++.+.. .+++ |+|.||..||.+|++.+.+||+||.++
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 3466899999998764 3466 999999999999999889999999863
No 32
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.8e-12 Score=87.08 Aligned_cols=47 Identities=26% Similarity=0.555 Sum_probs=38.9
Q ss_pred CCccceeccccccccc----cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+.+.+|+||++.+.. .+++ |+|.||..||.+|+..+.+||+||.+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 3456789999998752 3455 999999999999998888999999763
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=1.4e-12 Score=98.48 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=40.5
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCC-CCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSP-SLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~-sCP~Cr~~~ 192 (192)
++++..|+||++.+.+++..+|||+||..||..|+.... .||+||.++
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 345689999999999876556999999999999997544 899999864
No 34
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=2.8e-12 Score=91.74 Aligned_cols=49 Identities=12% Similarity=-0.116 Sum_probs=43.1
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++.++..|+||++.+.++|...|||+||..||.+|+....+||+|+.++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 3456789999999999977666999999999999998888999999864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=4.4e-12 Score=85.40 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=36.3
Q ss_pred cceeccccc-ccccc----ccCCCCCcccHhhHHHHhcc-CCCCCcccccC
Q 029528 148 EEECGICME-TNSKI----VLPNCNHAMCLKCYREWYFL-SPSLLLVCVSS 192 (192)
Q Consensus 148 ~~~C~ICle-~~~~~----vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~~ 192 (192)
+.+|+||++ .+.++ ++.+|||.||..||.+|+.+ +..||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 568999999 77664 34459999999999999654 46899999864
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=5.3e-12 Score=94.72 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=40.8
Q ss_pred Cccceecccccccccc-------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~-------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.++.+|+||++.+.++ ++.+|||.||..||.+|++.+.+||+||.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 3567899999998765 6666999999999999999889999999864
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=7.9e-12 Score=92.24 Aligned_cols=48 Identities=10% Similarity=-0.137 Sum_probs=42.7
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+.++..|+||++.+.++|..+|||+||..||.+|+....+||+|+.++
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 456789999999999977666999999999999998888999999874
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=1.2e-11 Score=90.85 Aligned_cols=49 Identities=8% Similarity=-0.168 Sum_probs=43.3
Q ss_pred cCCccceeccccccccccccCCCC-CcccHhhHHHHhccCCCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~-H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++.++..|+||++++.++|...|| |+||+.||.+|+....+||+||.++
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 345678999999999998766799 9999999999998888999999864
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=4.5e-12 Score=94.44 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=40.6
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhcc-CCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-SPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~~ 192 (192)
..++..|+||++.+.+++..+|||+||..||.+|+.. ...||+||.++
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 4567899999999998665569999999999999976 56899999863
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=7.2e-12 Score=92.28 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=39.3
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccC---CCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLS---PSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~---~sCP~Cr~~~ 192 (192)
.++.+|+||++.+.+++..+|||.||..||.+|+..+ ..||+||.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 3456899999999986655699999999999999754 3899999863
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=2.6e-11 Score=85.77 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=38.0
Q ss_pred cCCccceecccccccc--ccccC--CCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 144 DIEREEECGICMETNS--KIVLP--NCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~--~~vL~--~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
.++++.+|+||+|.+. +++.. .|||+||..|+.+++. ....||.||+++
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567789999999874 33332 3999999999999774 456899999874
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.13 E-value=1.2e-11 Score=92.87 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=41.8
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccCC-CCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSP-SLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~-sCP~Cr~~~ 192 (192)
.++++..|+||++.+.+++..+|||.||..||.+|+..+. .||+||.+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 4567789999999999866556999999999999997655 999999863
No 43
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.12 E-value=1.8e-11 Score=91.37 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=38.4
Q ss_pred ccceecccccccccc------------------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~------------------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
++..|+||++.+... ++++|+|.||..||.+|+.++.+||+||.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456899999987632 3345999999999999999999999999874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=9.6e-12 Score=97.78 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=40.9
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhccCC-CCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSP-SLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~-sCP~Cr~~~ 192 (192)
+.++..|+||++.+.+++..+|||+||..||.+|+.... .||+||.++
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 346689999999999866566999999999999997654 899999863
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=1e-11 Score=92.64 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=41.0
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhcc-CCCCCcccccC
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL-SPSLLLVCVSS 192 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~~ 192 (192)
+.++..|+||++.+.+++..+|||.||..||.+|+.. ..+||+||.++
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 3456789999999998766679999999999999976 66899999863
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=1.5e-11 Score=97.13 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=39.9
Q ss_pred CCccceeccccccccccc-cCCCCCcccHhhHHHHhcc-CCCCCccccc
Q 029528 145 IEREEECGICMETNSKIV-LPNCNHAMCLKCYREWYFL-SPSLLLVCVS 191 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~v-L~~C~H~FC~~Ci~~W~~~-~~sCP~Cr~~ 191 (192)
+.++..|+||++.+.+++ +++|||.||..||.+|+.. ...||+||.+
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKK 99 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence 345679999999999855 4369999999999999986 6789999976
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.5e-11 Score=92.13 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=39.2
Q ss_pred CccceeccccccccccccC-CCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~-~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++..|+||++.+.+++.. +|||+||..||..|+. ..||+||.++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 4568999999999987655 7999999999999987 7899999864
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=94.94 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=41.7
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccCC-CCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSP-SLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~-sCP~Cr~~ 191 (192)
.++++.+|+||++.+.+++...|||.||..||.+|+..+. .||+||.+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 75 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHE 75 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCc
Confidence 4567889999999999977667999999999999997655 89999974
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=5.1e-11 Score=99.51 Aligned_cols=49 Identities=12% Similarity=-0.132 Sum_probs=41.7
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccC-CCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLS-PSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~-~sCP~Cr~~~ 192 (192)
+..++..|+||++.+.++|..+|||+||..||.+|+..+ .+||+||.++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 345678999999999998776799999999999999764 4599999874
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.04 E-value=4.7e-11 Score=80.98 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=39.9
Q ss_pred CccceeccccccccccccC--CCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLP--NCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~--~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|.||++...++++- +|||. ||..|+.+|.+.+..||+||.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 4567899999999886542 49999 89999999998888999999863
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=7e-11 Score=77.85 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=36.3
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.++..|+||++.+.++++.+|||+||..|+.+| ...||+||.++
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEe
Confidence 355789999999998665559999999999874 45899999863
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=5.2e-11 Score=89.23 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=40.5
Q ss_pred Cccceecccccccccc-------ccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~-------vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+..+ +..+|||.||..||.+|++.+.+||+||.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 4568899999998753 5556999999999999999999999999863
No 53
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=4.2e-11 Score=91.12 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=0.9
Q ss_pred ccceeccccccccc------------------cccCCCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSK------------------IVLPNCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~------------------~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+..|+||++.+.. +++++|+|.||..||.+|+..+.+||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 34689999998754 23345999999999999999999999999873
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.98 E-value=5.3e-11 Score=82.68 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=36.9
Q ss_pred CccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++..|+||++.+.++++.+|||. ||..|+..| ..||+||.++
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCc
Confidence 455789999999998666559999 999999998 6899999864
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=1.4e-10 Score=78.37 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=38.4
Q ss_pred ccceeccccccccccccC--CCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 147 REEECGICMETNSKIVLP--NCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~--~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
.+.+|.||++...++++- +|||. ||..|+.+|.+++..||+||.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 456899999998874432 49998 99999999998888999999863
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.6e-10 Score=83.76 Aligned_cols=46 Identities=15% Similarity=-0.017 Sum_probs=38.8
Q ss_pred CCccceeccccccccccccC-CCCCcccHhhHHHHhccC------CCCCc--ccc
Q 029528 145 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWYFLS------PSLLL--VCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~-~C~H~FC~~Ci~~W~~~~------~sCP~--Cr~ 190 (192)
..++..|+||++.+.++|.. .|||+||..||.+|+... .+||+ |+.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcc
Confidence 34668999999999997766 599999999999998643 48999 874
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=90.45 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=41.5
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccC-CCCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLS-PSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~-~sCP~Cr~~ 191 (192)
.++++..|+||++.+.+++..+|||+||..||.+|+..+ ..||.||.+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 62 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 62 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccC
Confidence 456778999999999987666799999999999998754 499999976
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=3.3e-10 Score=101.72 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=40.2
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
.+.+|+||++...++++.+|||.||..|+..|.. ...+||+||.+.
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 3468999999999877666999999999999997 678999999863
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.89 E-value=6.7e-10 Score=90.14 Aligned_cols=49 Identities=10% Similarity=-0.152 Sum_probs=42.2
Q ss_pred cCCccceeccccccccccccCCCCCcccHhhHHHHhccC-CCCCcccccC
Q 029528 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFLS-PSLLLVCVSS 192 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~-~sCP~Cr~~~ 192 (192)
++.++..|+||++.+.+||+.+|||+||..||..|+..+ .+||+|+.++
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 456779999999999998777799999999999999754 4799999874
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=5.1e-10 Score=77.67 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=35.7
Q ss_pred CccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++.+.++++.+|||. ||..|+.+. ..||+||.+.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 66 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 66 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCcee
Confidence 345689999999998776569999 999999653 6899999863
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=8.4e-10 Score=78.37 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=36.9
Q ss_pred Cccceeccccccccc---cccCCCC-----CcccHhhHHHHhccC--CCCCcccccC
Q 029528 146 EREEECGICMETNSK---IVLPNCN-----HAMCLKCYREWYFLS--PSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~---~vL~~C~-----H~FC~~Ci~~W~~~~--~sCP~Cr~~~ 192 (192)
+++..|.||++.+.. .++| |+ |.||..||.+|+..+ .+||+||.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 456789999987642 5565 96 999999999999765 4899999764
No 62
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=5e-09 Score=73.57 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=37.9
Q ss_pred ccceeccccccccc-cccCCCCCcccHhhHHHHhccC--CCCCccccc
Q 029528 147 REEECGICMETNSK-IVLPNCNHAMCLKCYREWYFLS--PSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~--~sCP~Cr~~ 191 (192)
...+|.||.+.+.. ..-+.|+|.|+..||.+|++++ .+||.||.+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCc
Confidence 34789999999875 3344799999999999999876 799999975
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.75 E-value=9.1e-10 Score=77.66 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=36.1
Q ss_pred CccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++.+|+||++...++++.+|||. ||..|+..|. .||+||.++
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i 59 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRV 59 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBC
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchh
Confidence 345689999999998665569999 9999998874 899999863
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.7e-09 Score=90.48 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred Cccceecccccccccccc-CCCCCcccHhhHHHHhccC--CCCCc--cccc
Q 029528 146 EREEECGICMETNSKIVL-PNCNHAMCLKCYREWYFLS--PSLLL--VCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL-~~C~H~FC~~Ci~~W~~~~--~sCP~--Cr~~ 191 (192)
..+..|+||++.+.++|. ..|||+||..||.+|+..+ ..||+ |+.+
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~ 229 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQV 229 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCE
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCc
Confidence 466899999999999886 3799999999999998754 37999 9875
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=9.1e-09 Score=70.57 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=35.6
Q ss_pred CccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCccccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+++.+|.||++...++++.+|+|. ||..|+.. ...||+||.+
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~ 55 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQF 55 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcc
Confidence 456789999999998776559999 99999984 4689999986
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=2e-08 Score=72.18 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=34.8
Q ss_pred ccceeccccccccccc---cCCCCCcccHhhHHHHhcc--------CCCCCc--cccc
Q 029528 147 REEECGICMETNSKIV---LPNCNHAMCLKCYREWYFL--------SPSLLL--VCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~~v---L~~C~H~FC~~Ci~~W~~~--------~~sCP~--Cr~~ 191 (192)
++.+|+||++.+...+ +.+|||.||..|+.+++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4578999999987633 2359999999999987642 237999 9875
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.53 E-value=9.9e-09 Score=90.75 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=37.2
Q ss_pred CccceeccccccccccccCCCCCc-ccHhhHHHHhccCCCCCcccccC
Q 029528 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~-FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
+++..|+||++.+.++++.+|||. ||..|+..| ..||+||.++
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCc
Confidence 456789999999998766559999 999999988 5799999864
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.46 E-value=2.8e-08 Score=66.95 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=39.0
Q ss_pred ceeccccccccccccC-CCCCcccHhhHHHHhccCCCCCcccccC
Q 029528 149 EECGICMETNSKIVLP-NCNHAMCLKCYREWYFLSPSLLLVCVSS 192 (192)
Q Consensus 149 ~~C~ICle~~~~~vL~-~C~H~FC~~Ci~~W~~~~~sCP~Cr~~~ 192 (192)
..|+||++.+.++|+. .+||+|++.||++|..++.+||+.+.+.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 5799999999997765 7999999999999998777899998763
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.25 E-value=1.8e-07 Score=82.99 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=35.8
Q ss_pred ccceeccccccccc-ccc-------CCCCCcccHhhHHHHhccC-----------CCCCccccc
Q 029528 147 REEECGICMETNSK-IVL-------PNCNHAMCLKCYREWYFLS-----------PSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~vL-------~~C~H~FC~~Ci~~W~~~~-----------~sCP~Cr~~ 191 (192)
...+|+||++.+.. ..+ +.|+|.||..|+.+|+.+. ++||.||.+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 45789999998765 333 3799999999999998542 469999975
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.18 E-value=1.2e-06 Score=58.69 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred Cccceeccccccccc-cccCCCC--C---cccHhhHHHHhcc--CCCCCcccccC
Q 029528 146 EREEECGICMETNSK-IVLPNCN--H---AMCLKCYREWYFL--SPSLLLVCVSS 192 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~vL~~C~--H---~FC~~Ci~~W~~~--~~sCP~Cr~~~ 192 (192)
+++..|.||++.... .++| |. | .|+..|+.+|... +.+||+|+.++
T Consensus 4 ~~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 455789999987554 4555 65 4 8999999999864 56899999864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.97 E-value=3e-06 Score=62.58 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=33.5
Q ss_pred eeccccccccc--cccCCCCCcccHhhHHHHhc-cCCCCCcccccC
Q 029528 150 ECGICMETNSK--IVLPNCNHAMCLKCYREWYF-LSPSLLLVCVSS 192 (192)
Q Consensus 150 ~C~ICle~~~~--~vL~~C~H~FC~~Ci~~W~~-~~~sCP~Cr~~~ 192 (192)
-|++|-=.+.. .++| |.|.||.+|+..|.+ +.++||.|+.+.
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 37788777665 4555 999999999999985 467999999763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.40 E-value=7.8e-05 Score=62.55 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=37.0
Q ss_pred cceeccccccccc-cccCCCCCcccHhhHHHHhccCC--CCCccccc
Q 029528 148 EEECGICMETNSK-IVLPNCNHAMCLKCYREWYFLSP--SLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~~-~vL~~C~H~FC~~Ci~~W~~~~~--sCP~Cr~~ 191 (192)
-.+|.||.+.... ..-++|+|.||..|+.+|++... .||.|+.+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 4689999999887 44567999999999999987644 89999865
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.50 E-value=0.0012 Score=47.27 Aligned_cols=33 Identities=18% Similarity=0.491 Sum_probs=25.7
Q ss_pred ccceecccccc-cccccc--CCCCCcccHhhHHH-Hh
Q 029528 147 REEECGICMET-NSKIVL--PNCNHAMCLKCYRE-WY 179 (192)
Q Consensus 147 ~~~~C~ICle~-~~~~vL--~~C~H~FC~~Ci~~-W~ 179 (192)
++..|+||.+. +.+++. ..|+|+||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 35789999975 555553 45999999999998 54
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.31 E-value=0.09 Score=38.25 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=34.9
Q ss_pred ccceeccccccccccccCCC-CCcccHhhHHHHhccCCCCCccccc
Q 029528 147 REEECGICMETNSKIVLPNC-NHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C-~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
.-..|..|.-.....| . | .|-+|++|+...+..+..||+|..+
T Consensus 27 G~~nCKsCWf~~k~LV-~-C~dHYLCl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLV-E-CNNHYLCLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp CCCCCCSSCSCCSSEE-E-CSSCEEEHHHHHHTCSSSSEETTTTEE
T ss_pred CcccChhhccccCCee-e-ecchhhHHHHHHHHHhhccCCcccCCc
Confidence 3467999987766444 3 5 6999999999999999999999865
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.37 E-value=0.4 Score=34.43 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=33.7
Q ss_pred cceecccccccc-------ccccCCCCCcccHhhHH-HHhccCCCCCccccc
Q 029528 148 EEECGICMETNS-------KIVLPNCNHAMCLKCYR-EWYFLSPSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~-------~~vL~~C~H~FC~~Ci~-~W~~~~~sCP~Cr~~ 191 (192)
...|.||-+..- .+.--.|+-..|+.|++ +....++.||.|.++
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCc
Confidence 368999999843 23344588899999998 455678899999865
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.39 E-value=0.41 Score=32.12 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=32.5
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHhccC----CCCCcccc
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWYFLS----PSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~~----~sCP~Cr~ 190 (192)
.+..|.||.+.-....-..|...||..|+...+... =.||.|..
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 446799998765545556799999999997665432 27999964
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.36 E-value=0.57 Score=33.20 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=24.8
Q ss_pred ccceeccccccccccccCCC----CCcccHhhHHHHhc
Q 029528 147 REEECGICMETNSKIVLPNC----NHAMCLKCYREWYF 180 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C----~H~FC~~Ci~~W~~ 180 (192)
....|.+|.|..++.-.-.| .|.||..|-+...+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 44789999999886211113 79999999988764
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.45 E-value=0.69 Score=45.71 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=40.6
Q ss_pred cCCccceeccccccccccccCCCC-CcccHhhHHHHhccCCCCCccccc
Q 029528 144 DIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~~~vL~~C~-H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
+.-++..|+|-.+.+.+||..+-| ++|=+..|++|+....+||+=|.+
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~ 935 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMP 935 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCB
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCC
Confidence 345678999999999997765476 699999999999888899998765
No 79
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=83.42 E-value=0.17 Score=35.10 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=17.8
Q ss_pred CCCCcccHhhHHHHhccCCCCCc
Q 029528 165 NCNHAMCLKCYREWYFLSPSLLL 187 (192)
Q Consensus 165 ~C~H~FC~~Ci~~W~~~~~sCP~ 187 (192)
.|+|.||..|-..|.. .+|..
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~~ 75 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECSA 75 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSSS
T ss_pred CCCCeeccccCccccC--Ccccc
Confidence 7999999999999987 56654
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.09 E-value=0.72 Score=30.18 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
...+..|.||.+.-....-..|...||..|+..-... .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4556789999986443445568889999999763322 227999975
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.26 E-value=0.82 Score=29.89 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=31.8
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCccccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCVS 191 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~~ 191 (192)
..+..|.||.+.-....-..|...||..|+..-+.. .=.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345779999875544555668889999998743322 2269999754
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.97 E-value=2.3 Score=27.97 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.9
Q ss_pred ceeccccccccc---cccCCCCCcccHhhHHHHhccCCCCCcc
Q 029528 149 EECGICMETNSK---IVLPNCNHAMCLKCYREWYFLSPSLLLV 188 (192)
Q Consensus 149 ~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~~~~sCP~C 188 (192)
..|--|...+.+ -.-++|++.||.+|=.=-...-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 469999988754 2368899999999955434445689988
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=74.66 E-value=4.4 Score=31.10 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=34.4
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhc-----------cCCCCCcccc
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYF-----------LSPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~-----------~~~sCP~Cr~ 190 (192)
...+..|.+|.+.-....-..|..+||..|+..=.. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345678999999877666667999999999985332 1227999974
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.59 E-value=0.67 Score=29.68 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=31.5
Q ss_pred CCccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
...+..|.||.+.-..+.-..|...||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999986544445678889999998743322 226998864
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.24 E-value=7.7 Score=29.30 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHh------c----cC-CCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWY------F----LS-PSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~------~----~~-~sCP~Cr~ 190 (192)
..+..|.||.+.-....-..|-..||..|+..-. + .. =.|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4557799999886655556799999999998531 1 12 27999964
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=64.97 E-value=7.8 Score=27.49 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=24.5
Q ss_pred CCccceeccccccccccccC--CCCCcccHhhHHHH
Q 029528 145 IEREEECGICMETNSKIVLP--NCNHAMCLKCYREW 178 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~--~C~H~FC~~Ci~~W 178 (192)
+..|..|.||-.......+| -|+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 34678999998655443333 26899999999985
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.71 E-value=1.2 Score=29.43 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=30.5
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
..+..|.||.+.-..+.-..|.-.||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999976544445568888999998743221 226988854
No 88
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.57 E-value=2.1 Score=28.01 Aligned_cols=34 Identities=32% Similarity=0.684 Sum_probs=25.3
Q ss_pred ceeccccccccc------cccCC--CCCcccHhhHHHHhccC
Q 029528 149 EECGICMETNSK------IVLPN--CNHAMCLKCYREWYFLS 182 (192)
Q Consensus 149 ~~C~ICle~~~~------~vL~~--C~H~FC~~Ci~~W~~~~ 182 (192)
..||-|.-...+ ++-.. |++.||..|...|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 468888777653 45555 99999999999997543
No 89
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.62 E-value=3.6 Score=31.89 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=23.8
Q ss_pred ccceeccccccccc-----cccCCCCCcccHhhH
Q 029528 147 REEECGICMETNSK-----IVLPNCNHAMCLKCY 175 (192)
Q Consensus 147 ~~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci 175 (192)
.+..|.+|...+.. .+-..|.|.+|.+|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 56899999998642 456679999999996
No 90
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=60.19 E-value=8.7 Score=34.16 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=35.0
Q ss_pred hHHHHhhhccchHhhhccccccCCccceeccccccccccccC--CCCCcccHhhHHHHhc
Q 029528 123 AVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLP--NCNHAMCLKCYREWYF 180 (192)
Q Consensus 123 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~vL~--~C~H~FC~~Ci~~W~~ 180 (192)
..|-..|...+.. --+...+..|.||-+.-....-. +|...||..||.....
T Consensus 74 ~~Ck~~y~~~~f~------~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 74 APCKDKFLDALFL------YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp HHHHHHHHTTTTC------BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTC
T ss_pred hHHHHHHhccCcc------cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcC
Confidence 3466666554421 11234567899999887655544 7999999999998874
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.67 E-value=4 Score=28.91 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.4
Q ss_pred CccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
+.+..|.+|.+.-....-..|.-.|+..|+..=+.. .-.||.|..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 456789999987544455668888999998543322 226999964
No 92
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=58.80 E-value=5.4 Score=31.28 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=27.8
Q ss_pred CccceeccccccccccccC--CCCCcccHhhHHHHhcc
Q 029528 146 EREEECGICMETNSKIVLP--NCNHAMCLKCYREWYFL 181 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~--~C~H~FC~~Ci~~W~~~ 181 (192)
..+..|.||-+.-....-. +|...||..||......
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4567899999877554444 69999999999887643
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.14 E-value=1.7 Score=27.99 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=29.7
Q ss_pred ccceeccccccccccccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
.+..|.||...-..+.-..|.-.|+..|+..-+.. .-.||.|..
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 35679999986444445678889999998743221 226888853
No 94
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.20 E-value=1.1 Score=31.05 Aligned_cols=18 Identities=33% Similarity=1.259 Sum_probs=15.7
Q ss_pred cccCCCCCcccHhhHHHH
Q 029528 161 IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W 178 (192)
+.-|.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 456679999999999999
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.73 E-value=3.9 Score=29.37 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.3
Q ss_pred Cccceeccccccccc---cccCCCCCcccHhhHHHHhcc----CCCCCcc
Q 029528 146 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWYFL----SPSLLLV 188 (192)
Q Consensus 146 ~~~~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~~----~~sCP~C 188 (192)
.++..|.||.+.-.. +.-..|...||..|+...... .-.||.|
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 356789999887543 344678999999999765432 1256665
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=54.07 E-value=4.1 Score=28.50 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCccceeccccccc-----cccccCCCCCcccHhhHHHHhc--cCCCCCcccc
Q 029528 145 IEREEECGICMETN-----SKIVLPNCNHAMCLKCYREWYF--LSPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~-----~~~vL~~C~H~FC~~Ci~~W~~--~~~sCP~Cr~ 190 (192)
.+++..|.||.+.- ..+.-..|.-.|+..|+..-.. ..=.||.|..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 35668899999764 2244466888999999964221 1226888853
No 97
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=53.22 E-value=4.5 Score=30.61 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=24.1
Q ss_pred Cccceeccccccccc-----cccCCCCCcccHhhHH
Q 029528 146 EREEECGICMETNSK-----IVLPNCNHAMCLKCYR 176 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci~ 176 (192)
..+..|.+|...+.. .+-..|.|.+|.+|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 356789999999842 4556799999999954
No 98
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.98 E-value=5.9 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=25.9
Q ss_pred CccceeccccccccccccCCC-CCcccHhhHHHHh
Q 029528 146 EREEECGICMETNSKIVLPNC-NHAMCLKCYREWY 179 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL~~C-~H~FC~~Ci~~W~ 179 (192)
++..-|.||.+..+..-+. | +-.||.+|.++-.
T Consensus 6 ee~pWC~ICneDAtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCEEETT-TTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeEEecC-CCCceehHHHHHHHc
Confidence 4456799999997766665 8 7889999988754
No 99
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.71 E-value=8.6 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=23.6
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHHH
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W 178 (192)
...|.+|...|.. ---.+||+.||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3579999988763 334579999999997654
No 100
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.09 E-value=8.6 Score=28.52 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=23.1
Q ss_pred ceeccccccccc----cccCCCCCcccHhhHHHH
Q 029528 149 EECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 149 ~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W 178 (192)
..|.+|...|.. ----.||+.||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 579999998863 234569999999997543
No 101
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.56 E-value=9.1 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=23.0
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
...|.+|...|.. ----.||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3579999998863 23456999999999754
No 102
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.38 E-value=9.7 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=24.0
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHHH
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W 178 (192)
+...|.+|...|.. ----.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34689999998863 234569999999997543
No 103
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.30 E-value=7.1 Score=28.45 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=10.0
Q ss_pred ccHhhHHHHhc
Q 029528 170 MCLKCYREWYF 180 (192)
Q Consensus 170 FC~~Ci~~W~~ 180 (192)
||+.|+.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=45.24 E-value=5.5 Score=26.78 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCccceeccccccc-----cccccCCCCCcccHhhHHHHhc--cCCCCCcccc
Q 029528 145 IEREEECGICMETN-----SKIVLPNCNHAMCLKCYREWYF--LSPSLLLVCV 190 (192)
Q Consensus 145 ~~~~~~C~ICle~~-----~~~vL~~C~H~FC~~Ci~~W~~--~~~sCP~Cr~ 190 (192)
..++..|.||.+.- ..+.-..|.-.|+..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998764 1244467888999999964221 1226888854
No 105
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.22 E-value=10 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=22.3
Q ss_pred ceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 149 EECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 149 ~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
..|.+|...|.. ----.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999998763 23346999999999653
No 106
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.83 E-value=7.3 Score=28.34 Aligned_cols=11 Identities=27% Similarity=1.198 Sum_probs=10.1
Q ss_pred ccHhhHHHHhc
Q 029528 170 MCLKCYREWYF 180 (192)
Q Consensus 170 FC~~Ci~~W~~ 180 (192)
||+.|+.+|..
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 107
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.68 E-value=11 Score=23.00 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=26.7
Q ss_pred eecccccccc--c-cccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 150 ECGICMETNS--K-IVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 150 ~C~ICle~~~--~-~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
.|.||...-. + +.-..|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886532 2 334568889999999642221 226999975
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=44.55 E-value=7 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=30.0
Q ss_pred Cccceeccccccc----cc-cccCCCCCcccHhhHHHHhc-------cCCCCCcccc
Q 029528 146 EREEECGICMETN----SK-IVLPNCNHAMCLKCYREWYF-------LSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~----~~-~vL~~C~H~FC~~Ci~~W~~-------~~~sCP~Cr~ 190 (192)
.++..|.||.... .. ..-..|.-.||..|+..-.. ..=.||.|..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 4567899999763 22 44467888999999864221 1226888854
No 109
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=43.43 E-value=6.6 Score=28.77 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=16.2
Q ss_pred cccCCCCCcccHhhHHHHhccCCCCCccccc
Q 029528 161 IVLPNCNHAMCLKCYREWYFLSPSLLLVCVS 191 (192)
Q Consensus 161 ~vL~~C~H~FC~~Ci~~W~~~~~sCP~Cr~~ 191 (192)
..--+||+.|+ +-......||.|+..
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34446999992 112334579999864
No 110
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=43.36 E-value=5.9 Score=26.48 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.6
Q ss_pred eecccccccc--c-cccCCCCCcccHhhHHHHhc----c-CCCCCcccccC
Q 029528 150 ECGICMETNS--K-IVLPNCNHAMCLKCYREWYF----L-SPSLLLVCVSS 192 (192)
Q Consensus 150 ~C~ICle~~~--~-~vL~~C~H~FC~~Ci~~W~~----~-~~sCP~Cr~~~ 192 (192)
.|.||...-. . +.-..|...||..|+..=+. . .=.||.|+..+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~~ 70 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC-
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCcC
Confidence 5778875322 2 33356889999999873222 1 22799997653
No 111
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.20 E-value=4.2 Score=28.63 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=30.0
Q ss_pred cCCccceecccccccc--c-cccCCCCCcccHhhHHHHhcc----CCCCCcccc
Q 029528 144 DIEREEECGICMETNS--K-IVLPNCNHAMCLKCYREWYFL----SPSLLLVCV 190 (192)
Q Consensus 144 ~~~~~~~C~ICle~~~--~-~vL~~C~H~FC~~Ci~~W~~~----~~sCP~Cr~ 190 (192)
+..++..|.||...-. . +.-..|...||..|+..=+.. .=.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3455678999998653 2 334568888999998632211 126888853
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.04 E-value=6.8 Score=32.33 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=25.7
Q ss_pred cceecccccccc--c-cccCCCCCcccHhhHHHHhcc---C--CCCCccccc
Q 029528 148 EEECGICMETNS--K-IVLPNCNHAMCLKCYREWYFL---S--PSLLLVCVS 191 (192)
Q Consensus 148 ~~~C~ICle~~~--~-~vL~~C~H~FC~~Ci~~W~~~---~--~sCP~Cr~~ 191 (192)
+..|.+|...-. . ..-..|...||..|+..=+.. . =.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 346888886422 2 344568889999999742221 2 269999765
No 113
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.32 E-value=10 Score=30.73 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=24.4
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHHH
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W 178 (192)
++..|.+|...|.. ---.+||+.||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34689999988763 334579999999997643
No 114
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.36 E-value=13 Score=25.46 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=22.5
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
-..|.+|...|.. ----.||..||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3579999998763 23346999999999654
No 115
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.12 E-value=10 Score=30.41 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=23.8
Q ss_pred ccceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 147 REEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 147 ~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
++..|.+|...|.. ---..||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999998763 23456999999999754
No 116
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=36.61 E-value=14 Score=24.43 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=29.1
Q ss_pred ccceeccccccccc---cccCCCCCcccHhhHHHHhc----cCCCCCcccc
Q 029528 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWYF----LSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~---~vL~~C~H~FC~~Ci~~W~~----~~~sCP~Cr~ 190 (192)
+...|.||...... +.-..|.--||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 44569999876432 23346888899999864332 1237999964
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.79 E-value=15 Score=25.52 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=22.1
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
...|.+|...|.. ----.||+.||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3579999998763 23346999999999654
No 118
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.42 E-value=15 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.607 Sum_probs=22.5
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHH
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~ 177 (192)
...|..|...|+. ----+||..||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3579999998763 33457999999999644
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=33.62 E-value=20 Score=26.00 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCccceeccccccccccccC--CCCCcccHhhHH
Q 029528 145 IEREEECGICMETNSKIVLP--NCNHAMCLKCYR 176 (192)
Q Consensus 145 ~~~~~~C~ICle~~~~~vL~--~C~H~FC~~Ci~ 176 (192)
...+..|.+|.+.-..+.-. .|...|+..|+.
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCcccccccCc
Confidence 35667899999543322222 477889999986
No 120
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.33 E-value=17 Score=25.04 Aligned_cols=30 Identities=27% Similarity=0.687 Sum_probs=23.6
Q ss_pred Cccceeccccccccc-----cccCCCCCcccHhhH
Q 029528 146 EREEECGICMETNSK-----IVLPNCNHAMCLKCY 175 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-----~vL~~C~H~FC~~Ci 175 (192)
..+..|..|.+.+-. .+-+.|.|..|.+|=
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 345789999998652 566789999999994
No 121
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.87 E-value=6.3 Score=33.86 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=33.9
Q ss_pred Cccceecccccccccccc------CCCCCcccHhhHHHHhccCCCCCcccc
Q 029528 146 EREEECGICMETNSKIVL------PNCNHAMCLKCYREWYFLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~~vL------~~C~H~FC~~Ci~~W~~~~~sCP~Cr~ 190 (192)
.....|++|-......++ ..=.|-+|.-|-.+|.-....||.|-.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 445789999998765332 212367999999999988889999965
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.28 E-value=9.4 Score=26.02 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=27.2
Q ss_pred ceecccccccc--c-cccCCCCCcccHhhHHHHhc----c-CCCCCcccc
Q 029528 149 EECGICMETNS--K-IVLPNCNHAMCLKCYREWYF----L-SPSLLLVCV 190 (192)
Q Consensus 149 ~~C~ICle~~~--~-~vL~~C~H~FC~~Ci~~W~~----~-~~sCP~Cr~ 190 (192)
..|.||...-. . +.-..|...||..|+..=+. . .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47889986422 2 34456889999999873222 1 226999964
No 123
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=29.80 E-value=48 Score=23.59 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=21.1
Q ss_pred ccceecccccccc--------c-cccCCCCCcccHhhHH
Q 029528 147 REEECGICMETNS--------K-IVLPNCNHAMCLKCYR 176 (192)
Q Consensus 147 ~~~~C~ICle~~~--------~-~vL~~C~H~FC~~Ci~ 176 (192)
....|.+|+.... . +.-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3467999987531 1 3345689999999984
No 124
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.41 E-value=28 Score=24.54 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=26.0
Q ss_pred Cccceeccccccccc-cc-cCC--CC-CcccHhhHHHHh--ccCCCCCcccc
Q 029528 146 EREEECGICMETNSK-IV-LPN--CN-HAMCLKCYREWY--FLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~v-L~~--C~-H~FC~~Ci~~W~--~~~~sCP~Cr~ 190 (192)
.+..-| ||...... ++ --+ |. .-||..|+.--. ...-.||.|+.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 84 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccC
Confidence 344567 99986443 22 233 44 469999986211 12337999975
No 125
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=28.11 E-value=25 Score=23.42 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=26.1
Q ss_pred Cccceeccccccccc-cc-cCC--CC-CcccHhhHHHHh--ccCCCCCcccc
Q 029528 146 EREEECGICMETNSK-IV-LPN--CN-HAMCLKCYREWY--FLSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~v-L~~--C~-H~FC~~Ci~~W~--~~~~sCP~Cr~ 190 (192)
.+..-| ||...... ++ --+ |. .-||..|+.--. ...-.||.|+.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 64 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCc
Confidence 344667 89886432 22 233 55 579999986211 12237999975
No 126
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=27.04 E-value=3.8 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=29.0
Q ss_pred Cccceecccccc-cccc---ccCCCCCcccHhhHHHHhccCC----CCCcccc
Q 029528 146 EREEECGICMET-NSKI---VLPNCNHAMCLKCYREWYFLSP----SLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~-~~~~---vL~~C~H~FC~~Ci~~W~~~~~----sCP~Cr~ 190 (192)
.+...|.||.-. |.++ .-..|.-.||.+|-..|.-++. .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 345789999987 4442 2334777799999777654332 4666654
No 127
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.66 E-value=14 Score=23.73 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=28.4
Q ss_pred Cccceeccccccccc----cccCCCCCcccHhhHHHHhc-----cCCCCCcccc
Q 029528 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWYF-----LSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~~-----~~~sCP~Cr~ 190 (192)
+++..|+||.....+ +.-..|..=||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999887632 22335777788888853221 2347999964
No 128
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.79 E-value=11 Score=26.14 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=28.9
Q ss_pred ccceecccccccc----c-cccCCCCCcccHhhHHHHhc--------cCCCCCcccc
Q 029528 147 REEECGICMETNS----K-IVLPNCNHAMCLKCYREWYF--------LSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~----~-~vL~~C~H~FC~~Ci~~W~~--------~~~sCP~Cr~ 190 (192)
.+..|.||...-. . +.-..|...||..|+..-+. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4568999998732 2 44456888999999864322 1226888853
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.00 E-value=16 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=0.0
Q ss_pred cceeccccccccc----cccCCCCCcccHhhHHHHh
Q 029528 148 EEECGICMETNSK----IVLPNCNHAMCLKCYREWY 179 (192)
Q Consensus 148 ~~~C~ICle~~~~----~vL~~C~H~FC~~Ci~~W~ 179 (192)
...|.+|...+.. --..+||+.||..|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4679999988763 3445699999999987653
No 130
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.31 E-value=21 Score=20.75 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.3
Q ss_pred ccceeccccccccc
Q 029528 147 REEECGICMETNSK 160 (192)
Q Consensus 147 ~~~~C~ICle~~~~ 160 (192)
+...|||||..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 34789999987653
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.67 E-value=34 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.510 Sum_probs=19.6
Q ss_pred ceecccccccc---------c-cccCCCCCcccHhhHHH
Q 029528 149 EECGICMETNS---------K-IVLPNCNHAMCLKCYRE 177 (192)
Q Consensus 149 ~~C~ICle~~~---------~-~vL~~C~H~FC~~Ci~~ 177 (192)
..|.||++.-. . +.-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35889987531 1 33356889999999863
No 132
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.23 E-value=16 Score=23.48 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=25.4
Q ss_pred Cccceeccccccccc-cc-cCC--CC-CcccHhhHHHHhc--cCCCCCcccc
Q 029528 146 EREEECGICMETNSK-IV-LPN--CN-HAMCLKCYREWYF--LSPSLLLVCV 190 (192)
Q Consensus 146 ~~~~~C~ICle~~~~-~v-L~~--C~-H~FC~~Ci~~W~~--~~~sCP~Cr~ 190 (192)
.++.-| ||.+.... ++ -.+ |. .-||..|+.--.. ..-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 344556 99886432 22 233 55 5799999862111 2237999964
No 133
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.96 E-value=9.2 Score=26.69 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=4.5
Q ss_pred eeccccccc
Q 029528 150 ECGICMETN 158 (192)
Q Consensus 150 ~C~ICle~~ 158 (192)
.|+.|...+
T Consensus 4 ~CP~C~~~l 12 (81)
T 2jrp_A 4 TCPVCHHAL 12 (81)
T ss_dssp CCSSSCSCC
T ss_pred CCCCCCCcc
Confidence 455555443
No 134
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=21.22 E-value=22 Score=22.73 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=24.6
Q ss_pred ccceeccccccccc-cc-cCC--CC-CcccHhhHHHHh--ccCCCCCcccc
Q 029528 147 REEECGICMETNSK-IV-LPN--CN-HAMCLKCYREWY--FLSPSLLLVCV 190 (192)
Q Consensus 147 ~~~~C~ICle~~~~-~v-L~~--C~-H~FC~~Ci~~W~--~~~~sCP~Cr~ 190 (192)
+..-| ||...... ++ -.+ |. .-||..|+.--. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 34456 99886433 22 233 44 569999986211 12237999864
Done!