Query 029529
Match_columns 192
No_of_seqs 116 out of 346
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 23:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 75.0 1.4 4.8E-05 34.2 2.1 27 5-38 49-75 (130)
2 3u5c_R RP51A, 40S ribosomal pr 30.2 36 0.0012 26.4 3.0 27 5-38 49-75 (136)
3 3iz6_Q 40S ribosomal protein S 21.0 45 0.0015 26.0 2.0 27 5-38 49-75 (141)
4 2gsm_B Cytochrome C oxidase su 17.0 1.7E+02 0.0058 24.4 4.9 18 97-114 77-94 (262)
5 1nig_A Hypothetical protein TA 14.7 2.2E+02 0.0074 22.0 4.5 39 148-186 94-134 (152)
6 3hb3_B Cytochrome C oxidase su 10.9 3.1E+02 0.011 23.4 4.9 17 98-114 109-125 (298)
7 2exn_A Hypothetical protein BO 9.2 82 0.0028 23.4 0.5 11 26-36 9-19 (136)
8 1v54_B Cytochrome C oxidase po 8.8 4.2E+02 0.014 21.4 4.7 21 94-114 60-80 (227)
9 2fm8_C Cell invasion protein S 8.5 1.3E+02 0.0044 25.1 1.4 13 126-138 220-232 (240)
10 2fm9_A Cell invasion protein S 8.1 1.1E+02 0.0039 25.1 0.9 12 127-138 195-206 (215)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=75.04 E-value=1.4 Score=34.20 Aligned_cols=27 Identities=48% Similarity=0.570 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 029529 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (192)
Q Consensus 5 r~~gd~~Hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ 38 (192)
|++|...| +.|-.+...+.|||+|.|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 57888888 4566667789999999996
No 2
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=30.21 E-value=36 Score=26.45 Aligned_cols=27 Identities=44% Similarity=0.551 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 029529 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (192)
Q Consensus 5 r~~gd~~Hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ 38 (192)
|++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 566666664 455566679999999997
No 3
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.99 E-value=45 Score=26.04 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 029529 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (192)
Q Consensus 5 r~~gd~~Hl~s~~iLl~Ki~~~kS~~GiSlkTQ~ 38 (192)
|++|...|+ .|-.+...+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 566666664 455566678999999996
No 4
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=17.03 E-value=1.7e+02 Score=24.42 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=12.1
Q ss_pred hHHhHHHHHHHHHHhcCC
Q 029529 97 HWFIVLPCLVLALLINER 114 (192)
Q Consensus 97 ~~~ll~p~~vLali~~~~ 114 (192)
..+.++|+++|.++.-|+
T Consensus 77 iiWTiiP~iILi~la~pS 94 (262)
T 2gsm_B 77 IAWTIVPIVILVAIGAFS 94 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 346778888877665544
No 5
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=14.74 E-value=2.2e+02 Score=22.04 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHH--HHHHHHHHHHhhcccCeeehhhhHHH
Q 029529 148 NLTGQYVFLLGYI--VVLNFVIDEIVFCFFNNFVINEVLFF 186 (192)
Q Consensus 148 ~lTshYv~aLG~y--yilnWi~r~~~~~~~~~~~~~~~~~~ 186 (192)
+=+|-|.++-..- -.+||++|.=.+++|-.+|-+|..-.
T Consensus 94 nk~s~Ymf~A~sh~~~Av~~~~~m~edErFk~~v~d~~I~~ 134 (152)
T 1nig_A 94 NRWSLYMFLARSAVDSAVYWSYRMKETEEFKEIVKEEMISK 134 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHH
Confidence 4678888866666 78999999999988888887776543
No 6
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=10.94 E-value=3.1e+02 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHhcCC
Q 029529 98 WFIVLPCLVLALLINER 114 (192)
Q Consensus 98 ~~ll~p~~vLali~~~~ 114 (192)
.+.++|++++.++.-|+
T Consensus 109 iWTiiP~iILi~La~pS 125 (298)
T 3hb3_B 109 IWTLVPVLILVAIGAFS 125 (298)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 46667777776654443
No 7
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=9.23 E-value=82 Score=23.45 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=9.4
Q ss_pred cccccccccch
Q 029529 26 IKSCAGISLKT 36 (192)
Q Consensus 26 ~kS~~GiSlkT 36 (192)
=|||.|++++.
T Consensus 9 IKSc~g~~l~~ 19 (136)
T 2exn_A 9 IAECGATTQSE 19 (136)
T ss_dssp ETTTEEECCGG
T ss_pred cccCCceecCc
Confidence 48999999986
No 8
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=8.83 E-value=4.2e+02 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=13.3
Q ss_pred cchhHHhHHHHHHHHHHhcCC
Q 029529 94 TFRHWFIVLPCLVLALLINER 114 (192)
Q Consensus 94 ~f~~~~ll~p~~vLali~~~~ 114 (192)
..-..+.++|++++..+.-|+
T Consensus 60 ~lEiiWTiiP~iil~~la~ps 80 (227)
T 1v54_B 60 EVETIWTILPAIILILIALPS 80 (227)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeehHHHHHHHHHHHHH
Confidence 444557778888877664443
No 9
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=8.50 E-value=1.3e+02 Score=25.05 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.9
Q ss_pred HHHHHhhhhhHHH
Q 029529 126 LYLEAVAILPQLV 138 (192)
Q Consensus 126 iyLEsvAILPQL~ 138 (192)
==||.+|++|||.
T Consensus 220 R~Le~~AviP~LL 232 (240)
T 2fm8_C 220 RHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3589999999984
No 10
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=8.06 E-value=1.1e+02 Score=25.05 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHhhhhhHHH
Q 029529 127 YLEAVAILPQLV 138 (192)
Q Consensus 127 yLEsvAILPQL~ 138 (192)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999984
Done!