Query 029529
Match_columns 192
No_of_seqs 116 out of 346
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 23:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029529.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029529hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 34.9 49 0.0035 21.5 6.0 22 93-114 59-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 20.8 67 0.0049 21.3 4.6 17 98-114 80-96 (107)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 16.0 1.3E+02 0.0091 19.5 5.1 18 97-114 73-90 (100)
4 d1niga_ a.25.2.1 (A:) Hypothet 14.8 1E+02 0.0074 22.0 4.5 39 148-186 94-134 (148)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 12.7 1.8E+02 0.013 18.9 7.1 31 116-146 75-106 (107)
6 d2exna1 b.165.1.1 (A:1-128) Hy 10.2 31 0.0023 23.8 0.3 13 24-36 7-19 (128)
7 d2fm9a1 a.257.1.1 (A:49-263) C 8.0 54 0.0039 25.1 0.9 12 127-138 195-206 (215)
8 d1gqoa_ c.23.13.1 (A:) Type II 6.9 97 0.007 21.9 1.8 23 161-185 55-77 (141)
9 d2b8ta1 c.37.1.24 (A:11-149) T 6.8 62 0.0045 22.4 0.7 18 169-186 74-91 (139)
10 d1yksa1 c.37.1.14 (A:185-324) 6.4 56 0.0041 20.6 0.2 19 166-184 90-108 (140)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=34.88 E-value=49 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=13.9
Q ss_pred ccchhHHhHHHHHHHHHHhcCC
Q 029529 93 DTFRHWFIVLPCLVLALLINER 114 (192)
Q Consensus 93 D~f~~~~ll~p~~vLali~~~~ 114 (192)
...-...-++|+++|..+.-|+
T Consensus 59 ~~lEiiWTiiP~lILi~ia~PS 80 (90)
T d1v54b2 59 QEVETIWTILPAIILILIALPS 80 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHH
Confidence 3344456777887777666555
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=20.82 E-value=67 Score=21.35 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHhcCC
Q 029529 98 WFIVLPCLVLALLINER 114 (192)
Q Consensus 98 ~~ll~p~~vLali~~~~ 114 (192)
...++|+++|..+.-|+
T Consensus 80 ~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 80 IWTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666776666654443
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.97 E-value=1.3e+02 Score=19.46 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=11.9
Q ss_pred hHHhHHHHHHHHHHhcCC
Q 029529 97 HWFIVLPCLVLALLINER 114 (192)
Q Consensus 97 ~~~ll~p~~vLali~~~~ 114 (192)
....++|++++..+.-|+
T Consensus 73 iiWTviP~lILi~l~~pS 90 (100)
T d3dtub2 73 IAWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346778888777665544
No 4
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=14.84 E-value=1e+02 Score=21.96 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHH--HHHHHHHHHHhhcccCeeehhhhHHH
Q 029529 148 NLTGQYVFLLGYI--VVLNFVIDEIVFCFFNNFVINEVLFF 186 (192)
Q Consensus 148 ~lTshYv~aLG~y--yilnWi~r~~~~~~~~~~~~~~~~~~ 186 (192)
+=+|-|.++-..- -.+||++|.=.+++|-.+|-+|..-.
T Consensus 94 nk~slYmflArsh~~~Av~~~~~m~edErFk~~v~d~~I~~ 134 (148)
T d1niga_ 94 NRWSLYMFLARSAVDSAVYWSYRMKETEEFKEIVKEEMISK 134 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHH
Confidence 4678888866665 78999999999988888887776543
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=12.70 E-value=1.8e+02 Score=18.94 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=19.6
Q ss_pred chhhhHHHH-HHHHHHhhhhhHHHHHhhcCCc
Q 029529 116 TFKEVMWTF-SLYLEAVAILPQLVLLQRTRNI 146 (192)
Q Consensus 116 ~~~eilWtF-SiyLEsvAILPQL~mlqk~~~v 146 (192)
...|+.||. -..+=.+--.|.+..+++.+|+
T Consensus 75 ~~lEi~WTviP~lIL~~laipSl~~Ly~mde~ 106 (107)
T d3ehbb2 75 TPIEVIWTLVPVLILVAIGAFSLPILFRSQEM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468999993 3333333346888877776553
No 6
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=10.19 E-value=31 Score=23.76 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.0
Q ss_pred hhcccccccccch
Q 029529 24 HTIKSCAGISLKT 36 (192)
Q Consensus 24 ~~~kS~~GiSlkT 36 (192)
+-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4458999999854
No 7
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.02 E-value=54 Score=25.08 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHhhhhhHHH
Q 029529 127 YLEAVAILPQLV 138 (192)
Q Consensus 127 yLEsvAILPQL~ 138 (192)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999984
No 8
>d1gqoa_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Bacillus subtilis [TaxId: 1423]}
Probab=6.91 E-value=97 Score=21.92 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcccCeeehhhhHH
Q 029529 161 VVLNFVIDEIVFCFFNNFVINEVLF 185 (192)
Q Consensus 161 yilnWi~r~~~~~~~~~~~~~~~~~ 185 (192)
=++|||-+ ..+..|.+|+|-.-+
T Consensus 55 elI~~I~~--~~~~~dgiIiNPga~ 77 (141)
T d1gqoa_ 55 DLIDAIHE--AEEQYSGIVLNPGAL 77 (141)
T ss_dssp HHHHHHHH--HTTTCSEEEEECGGG
T ss_pred HHHHHHHH--hhhccceeeecchhh
Confidence 57899987 356789999996543
No 9
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=6.84 E-value=62 Score=22.41 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=13.8
Q ss_pred HHhhcccCeeehhhhHHH
Q 029529 169 EIVFCFFNNFVINEVLFF 186 (192)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (192)
.-..+..|.+.+||+-||
T Consensus 74 ~~~~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 74 NSFNDETKVIGIDEVQFF 91 (139)
T ss_dssp TTSCTTCCEEEECSGGGS
T ss_pred hccccCcCEEEechhhhc
Confidence 333467899999999886
No 10
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=6.41 E-value=56 Score=20.60 Aligned_cols=19 Identities=5% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHHhhcccCeeehhhhH
Q 029529 166 VIDEIVFCFFNNFVINEVL 184 (192)
Q Consensus 166 i~r~~~~~~~~~~~~~~~~ 184 (192)
.-+....+.+|.+|+||+-
T Consensus 90 ~~~~~~~~~~~lvIiDEaH 108 (140)
T d1yksa1 90 MLEPTRVVNWEVIIMDEAH 108 (140)
T ss_dssp HTSSSCCCCCSEEEETTTT
T ss_pred HhccccccceeEEEEcccc
Confidence 3344556789999999974
Done!