BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029530
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 190
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 122/175 (69%), Gaps = 3/175 (1%)
Query: 16 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRK 75
PTE E VAQA +LEN++ ELK++L+ L ++DV+G +KA+ ++VP + K
Sbjct: 13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHK 72
Query: 76 IHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYP 133
+ ++L RELEKKF + V+ +A RRI+ P + S +RPRSRTLTAVHD +LED+V+P
Sbjct: 73 VQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFP 132
Query: 134 AEIVGKRVRYRLDGSKIIKVIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 188
EIVGKRVRY + G+KI KV+ LD K+ +YKLESF VY KLTGK +VF+ P
Sbjct: 133 TEIVGKRVRYLVGGNKIQKVL-LDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186
>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 202
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 114/184 (61%), Gaps = 3/184 (1%)
Query: 6 KKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRK-AIVVY 64
+K++K K A P++ EE+VA+ LF+LE +++ L++ L +IN ++K A+++
Sbjct: 8 RKLRKLKRANPSQEEESVARVLFELEGSHKTLRAQLPRFHINTVRTSSSPRHKKTAMIIL 67
Query: 65 VPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQR-PRSRTLTAVH 123
P R RKI L ELEK+F G VVL+A R+I + P +Q+ RSRT AV
Sbjct: 68 YPLRFIMLVRKIQRTLTAELEKRFPGNIVVLVAQRKITKRPNDVYKLQQVQRSRTSVAVF 127
Query: 124 DAMLEDVVYPAEIVGKRVRYRLDGSKIIKVIFLDPKERNNTEYKLESFSGVYRKLTGKDV 183
+ +L D++YP ++VG+R RYR DGSK++KV FLD ++R E +L + VY+ LT + V
Sbjct: 128 ENILNDLIYPCDVVGRRWRYRTDGSKLMKV-FLDARDRKRVESRLPLLAHVYKLLTHRTV 186
Query: 184 VFDY 187
F +
Sbjct: 187 TFGF 190
>pdb|2XZM|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 197
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 108/177 (61%), Gaps = 9/177 (5%)
Query: 17 TEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRK----AIVVYVPYRLRKA 72
T+ EE V AL +L+NT+ +LK+ L+ + + Q + ++ K A+++YV ++ +
Sbjct: 13 TKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKSAVLIYVHFQSYRV 72
Query: 73 YRKIHSRLVRELEKKFSGKDVVLIATRRIVRPP--KKGSAVQRPRSRTLTAVHDAMLEDV 130
+L+ ELEKK K +V +R + K+ + QRPRSR LT V+DA+L+D+
Sbjct: 73 LLSAARKLIIELEKKL--KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDALLDDL 130
Query: 131 VYPAEIVGKRVRYRLDGSKIIKVIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 187
+ P+ ++GKR+R RLDG+ + I LD +R+ E KL++ + +Y+ +T ++V F++
Sbjct: 131 LLPSTLIGKRIRARLDGTSFYR-IQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEF 186
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 17 TEFEETVAQALFDLENTNQELKSDLKDLYINQAIQ----MDVSGNRKAIVVYVPYRLRKA 72
+ +E+ + + LFDL + NQ+ + D Y+ AI+ M + G R V ++P+ +K
Sbjct: 185 SSYEDGIYRNLFDLADLNQQ--NSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKN 242
Query: 73 Y 73
+
Sbjct: 243 F 243
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 17 TEFEETVAQALFDLENTNQELKSDLKDLYINQAIQ----MDVSGNRKAIVVYVPYRLRKA 72
+ +E+ + + LFDL + NQ+ + D Y+ AI+ M + G R V ++P+ +K
Sbjct: 185 SSYEDGIYRNLFDLADLNQQ--NSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQKN 242
Query: 73 Y 73
+
Sbjct: 243 F 243
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 RELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDA 125
RE +K + KD+ A R ++ P KK S V PR R +TA H+A
Sbjct: 253 REGRRKITMKDLEEAADRVMMLPAKK-SLVLSPRDRRITAYHEA 295
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 RELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDA 125
RE +K + KD+ A R ++ P KK S V PR R +TA H+A
Sbjct: 262 REGRRKITMKDLEEAADRVMMLPAKK-SLVLSPRDRRITAYHEA 304
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 69 LRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLE 128
+ A ++I S +V E ++ F+ KD+ IA I+ PK+ A +T ++A +
Sbjct: 12 CKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIA----SLNEITEENEAFIG 67
Query: 129 DVVYPAEIVGKR 140
V+Y ++GK+
Sbjct: 68 KVLYKVSLIGKK 79
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 98 TRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDV--VYPAEIVGKRV 141
+R PP+ G A QRPR R+ + + L+ + P VG R+
Sbjct: 7 SRNCRNPPRSGDAQQRPRERSGSGMSTTPLQVLPGAEPLYSVGSRI 52
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 98 TRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDV--VYPAEIVGKRV 141
+R PP+ G A QRPR R+ + + L+ + P VG R+
Sbjct: 5 SRNCRNPPRSGDAQQRPRERSGSGMSTTPLQVLPGAEPLYSVGSRI 50
>pdb|4AJ5|1 Chain 1, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|2 Chain 2, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|3 Chain 3, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|4 Chain 4, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|U Chain U, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|V Chain V, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|W Chain W, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|X Chain X, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|Y Chain Y, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|Z Chain Z, Crystal Structure Of The Ska Core Complex
Length = 101
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 7 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDL 41
++Q+ D E ++FE+ + L+DL + Q LK D+
Sbjct: 24 RLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDI 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,421,182
Number of Sequences: 62578
Number of extensions: 212350
Number of successful extensions: 476
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 19
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)