Query 029530
Match_columns 192
No_of_seqs 120 out of 242
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 23:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 2.2E-97 8E-102 621.4 17.2 187 1-191 1-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 1.1E-83 3.8E-88 541.8 15.4 185 3-191 1-190 (197)
3 3bwd_D RAC-like GTP-binding pr 36.9 74 0.0025 22.6 5.5 44 59-102 81-124 (182)
4 3reg_A RHO-like small GTPase; 35.8 80 0.0027 23.1 5.7 45 59-103 96-140 (194)
5 4gzl_A RAS-related C3 botulinu 35.3 74 0.0025 23.8 5.5 44 59-102 103-146 (204)
6 1mh1_A RAC1; GTP-binding, GTPa 34.3 87 0.003 22.2 5.5 44 59-102 78-121 (186)
7 2atx_A Small GTP binding prote 33.8 84 0.0029 22.9 5.5 44 59-102 91-134 (194)
8 2q3h_A RAS homolog gene family 33.2 88 0.003 22.9 5.6 44 59-102 93-136 (201)
9 1qp6_A Protein (alpha2D); de n 31.7 11 0.00037 23.4 0.2 8 81-88 3-10 (35)
10 2j1l_A RHO-related GTP-binding 28.7 1.1E+02 0.0037 23.1 5.5 45 58-102 106-150 (214)
11 3h90_A Ferrous-iron efflux pum 28.4 2.4E+02 0.0082 23.0 9.0 72 14-96 202-276 (283)
12 2j0v_A RAC-like GTP-binding pr 27.8 1.2E+02 0.0041 22.4 5.5 44 59-102 82-125 (212)
13 2fv8_A H6, RHO-related GTP-bin 27.6 1.2E+02 0.0041 22.6 5.5 44 59-102 98-141 (207)
14 2zai_A Oligosaccharyl transfer 27.5 79 0.0027 29.8 5.3 55 39-99 419-474 (497)
15 2gco_A H9, RHO-related GTP-bin 27.2 1.2E+02 0.0042 22.4 5.5 45 59-103 98-142 (201)
16 1m7b_A RND3/RHOE small GTP-bin 27.1 1.4E+02 0.0047 21.6 5.7 45 59-103 80-124 (184)
17 3bj4_A Potassium voltage-gated 24.3 3.8 0.00013 27.5 -3.1 29 147-179 16-44 (49)
18 1uul_A Tryparedoxin peroxidase 24.2 1.3E+02 0.0045 22.6 5.2 47 50-97 27-75 (202)
19 1gwn_A RHO-related GTP-binding 23.3 1.6E+02 0.0056 22.1 5.7 45 59-103 101-145 (205)
20 1zye_A Thioredoxin-dependent p 22.5 55 0.0019 25.6 2.8 30 39-68 31-67 (220)
21 3p7i_A PHND, subunit of alkylp 22.1 34 0.0012 28.7 1.6 54 16-77 223-276 (321)
22 1qmv_A Human thioredoxin perox 21.5 1.7E+02 0.0057 21.9 5.3 47 50-97 25-73 (197)
23 3q3j_B RHO-related GTP-binding 20.9 1.7E+02 0.0059 22.0 5.4 45 59-103 100-144 (214)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=2.2e-97 Score=621.40 Aligned_cols=187 Identities=49% Similarity=0.815 Sum_probs=178.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHHHHHH
Q 029530 1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRL 80 (192)
Q Consensus 1 m~~~~~Ki~k~~~~~p~e~E~~Vaqal~dLe~~~~dLk~~Lr~l~i~~akei~v~~~kKAivIfVP~~~lk~f~Kiq~rL 80 (192)
|++.++||+|++ |||||.+|||||+|||++|+|||++|++|||++||||||+|||||||||||||||++|||||.||
T Consensus 1 m~~~~~KI~k~~---p~e~E~~vaqal~dLE~~~~dLK~~Lr~L~i~~akEiev~~~kKAivIfVP~p~lk~f~KIq~rL 77 (190)
T 3u5c_H 1 MSAPQAKILSQA---PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKL 77 (190)
T ss_dssp ---CCSSTTCSS---CCSHHHHHHHHHHHHHCSHHHHTTSSSSCCCSCEEEEECTTSCEEEEEEECSSSHHHHHHHTHHH
T ss_pred CCccccccCCCC---CCHHHHHHHHHHHHHhhCcHHHHHhhhcceeeeEEEEEecCCcEEEEEEecHHHHHHHHHHHHHH
Confidence 565578999996 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeeecccCCCCCCC--ccccCCCcchhhhhHhhhhcccccceeeceeEEEeeCCceeEEEEecCc
Q 029530 81 VRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKVIFLDP 158 (192)
Q Consensus 81 v~ELEKKfsg~~Vv~vAqRrIl~kp~~~~--~q~RPRSRTLTaVheaiLeDlV~P~eIVGKR~r~r~DGsk~~KV~~LD~ 158 (192)
++||||||||+||||||||||+|||++++ +|+|||||||||||||||||||||+|||||||||++|||+++|| |||+
T Consensus 78 vrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeDLv~P~eIVGKRir~rlDGskl~KV-~LD~ 156 (190)
T 3u5c_H 78 TRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKV-LLDS 156 (190)
T ss_dssp HHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHHHSCSSCEEEEEEEECSSSCEEEEE-EECS
T ss_pred HHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhhcccchheeeeEEEEecCCCEEEEE-EECH
Confidence 99999999999999999999999998876 49999999999999999999999999999999999999999999 9999
Q ss_pred ccccchhhhhhhHHHHHhhhcCCceEEECCCCC
Q 029530 159 KERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 191 (192)
Q Consensus 159 k~~~~ve~Kl~tfs~VYkkLTgK~v~FeFp~~~ 191 (192)
+|||++|||||||++|||+||||||+||||+++
T Consensus 157 ~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 157 KDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp SSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred HHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 999999999999999999999999999999864
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=1.1e-83 Score=541.79 Aligned_cols=185 Identities=34% Similarity=0.574 Sum_probs=177.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEec-CC---eeEEEEEeehhhHHHHHHHHH
Q 029530 3 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVS-GN---RKAIVVYVPYRLRKAYRKIHS 78 (192)
Q Consensus 3 ~~~~Ki~k~~~~~p~e~E~~Vaqal~dLe~~~~dLk~~Lr~l~i~~akei~v~-~~---kKAivIfVP~~~lk~f~Kiq~ 78 (192)
||++||+|+ .+|||||.+|||||+|||++++|||++|++|+|++||||||+ || +||||||||+|++++|||||.
T Consensus 1 ~a~~ki~k~--~~p~e~E~~VaqaL~dLE~~~~dLK~~l~~l~i~~aKeiev~~~~~k~kkaivIfVP~~~lk~f~kiq~ 78 (197)
T 2xzm_3 1 MALAKFHKK--QSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKSAVLIYVHFQSYRVLLSAAR 78 (197)
T ss_dssp -CCTTCSSC--SCCCHHHHHHHHHHHHHHHHCSHHHHHHHHCCEEEEEEEEEECTTCCEEEEEEEEECGGGHHHHHHHHH
T ss_pred CCcccccCC--CCCCHHHHHHHHHHHHHHhcCHHHHHhhhhcceEEEEEEEecCCCCccceEEEEEEccchhhHHHHHHH
Confidence 467899999 799999999999999999888899999999999999999997 66 779999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEeeecccCCCCCC-CccccCCCcchhhhhHhhhhcccccceeeceeEEEeeCCceeEEEEecC
Q 029530 79 RLVRELEKKFSGKDVVLIATRRIVRPPKKG-SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKVIFLD 157 (192)
Q Consensus 79 rLv~ELEKKfsg~~Vv~vAqRrIl~kp~~~-~~q~RPRSRTLTaVheaiLeDlV~P~eIVGKR~r~r~DGsk~~KV~~LD 157 (192)
||++|||||| |+||+|||||||+|+|+++ .+|+|||||||||||||||||||||+|||||||||++|||+++|| +||
T Consensus 79 rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV-~Ld 156 (197)
T 2xzm_3 79 KLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRI-QLD 156 (197)
T ss_dssp HHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHHHHHHSTTSCCSEEEEEECSSSCEECCE-EEE
T ss_pred HHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHHHHHhccchheeeeEEEEecCCCEEEEE-EeC
Confidence 9999999999 8999999999999999775 479999999999999999999999999999999999999999999 999
Q ss_pred cccccchhhhhhhHHHHHhhhcCCceEEECCCCC
Q 029530 158 PKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 191 (192)
Q Consensus 158 ~k~~~~ve~Kl~tfs~VYkkLTgK~v~FeFp~~~ 191 (192)
++||+++|||+|+|++||++|||+||+||||+.+
T Consensus 157 ~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~ 190 (197)
T 2xzm_3 157 QNDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK 190 (197)
T ss_dssp STTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred HHHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence 9999999999999999999999999999999764
No 3
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=36.94 E-value=74 Score=22.60 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-.....+|..+...+..+++...++.++++|+...=+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 46666667666788888877788899888778899999875533
No 4
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=35.82 E-value=80 Score=23.06 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=36.4
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
.++++.+-.....+|..+...+..+++...++.++++|+...=++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777778899988888889999888889999999866554
No 5
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=35.33 E-value=74 Score=23.84 Aligned_cols=44 Identities=7% Similarity=0.263 Sum_probs=35.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-.....+|..+...+..++++..++..+++|+...=+
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 56777777777889998888888999998889999999876543
No 6
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=34.30 E-value=87 Score=22.22 Aligned_cols=44 Identities=7% Similarity=0.242 Sum_probs=33.3
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-.....+|..+...+..++....++.++++|+...=+
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence 46666666666778888776778888887778899999876533
No 7
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=33.84 E-value=84 Score=22.85 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.4
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-.....+|..+...++.++....++.++++|+...=+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45666666666778888876778888887778899999986544
No 8
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=33.25 E-value=88 Score=22.90 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=34.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-.....+|..+...++.++....++.++++|+...=+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 46777777777788888877788888888888999999886544
No 9
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=31.74 E-value=11 Score=23.43 Aligned_cols=8 Identities=88% Similarity=1.182 Sum_probs=6.8
Q ss_pred HHHHHhhc
Q 029530 81 VRELEKKF 88 (192)
Q Consensus 81 v~ELEKKf 88 (192)
+.||||||
T Consensus 3 veelekkf 10 (35)
T 1qp6_A 3 VEELEKKF 10 (35)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 57999999
No 10
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=28.71 E-value=1.1e+02 Score=23.06 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=34.4
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 58 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 58 kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
-.++++.+-.....+|..+...+..++....++..+++|+...=+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 345666666667788988877788889887788899999876544
No 11
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=28.43 E-value=2.4e+02 Score=22.97 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehh---hHHHHHHHHHHHHHHHHhhcCC
Q 029530 14 AEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYR---LRKAYRKIHSRLVRELEKKFSG 90 (192)
Q Consensus 14 ~~p~e~E~~Vaqal~dLe~~~~dLk~~Lr~l~i~~akei~v~~~kKAivIfVP~~---~lk~f~Kiq~rLv~ELEKKfsg 90 (192)
.+|.+..+++-+++.+.+. .. ...++++ -..| ....+=+.|=++ .+...|+|..++-+.|+++|++
T Consensus 202 ~~~~~~~~~i~~~i~~~~~-V~----~v~~l~~-----~~~G-~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~ 270 (283)
T 3h90_A 202 ALPDEERQEIIDIVTSWPG-VS----GAHDLRT-----RQSG-PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG 270 (283)
T ss_dssp CCCHHHHHHHHHHHHHSSS-CS----EEEEEEE-----EEET-TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHhcCCC-cc----cceeeEE-----EEEC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3455677777777665541 11 2223332 1233 344444444333 3578899999999999999988
Q ss_pred CeEEEE
Q 029530 91 KDVVLI 96 (192)
Q Consensus 91 ~~Vv~v 96 (192)
.||.+=
T Consensus 271 ~~v~ih 276 (283)
T 3h90_A 271 SDVIIH 276 (283)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 887653
No 12
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=27.80 E-value=1.2e+02 Score=22.43 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-......|..+...++.+++...++.++++|+...=+
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 46666666666778888777788899888778899999876544
No 13
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=27.59 E-value=1.2e+02 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=33.1
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.++++.+-......|..+...+..+++...++..+++|+...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhh
Confidence 45666666667778888867778888887778899999876533
No 14
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=27.50 E-value=79 Score=29.82 Aligned_cols=55 Identities=15% Similarity=0.332 Sum_probs=40.2
Q ss_pred hcCcceeeeeeEE-EEecCCeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeee
Q 029530 39 SDLKDLYINQAIQ-MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATR 99 (192)
Q Consensus 39 ~~Lr~l~i~~ake-i~v~~~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqR 99 (192)
.++--+.|+-+|| +.+..|-.-|...+-+|.= +-..-+.|||+|+ |-.|++.+.|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~ 474 (497)
T 2zai_A 419 PQMDVFFITKIGENIQLKEGENTVKVRAELPEG-----VISSYKDELQRKY-GDKLIIRGIR 474 (497)
T ss_dssp EEEEEEEEEEEEEEEEECSEEEEEEEEEECCTT-----HHHHHHHHHHHHH-GGGEEEEEEE
T ss_pred ccceEEEEEeccccceeecCccEEEEEeeCchh-----HHHHHHHHHHHhh-CCEEEEEEee
Confidence 3445577889999 9999888899988888751 1223457899999 5566666665
No 15
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=27.24 E-value=1.2e+02 Score=22.37 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=33.7
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
.++++.+-......|..+...+..+++...++..+++|+...=+.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 456666666677788888677888888877788999998865443
No 16
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=27.09 E-value=1.4e+02 Score=21.61 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=33.7
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
.++++.+-.....+|..+...+..++....++.++++|+...=++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 466666777777888887666778887777788999999876543
No 17
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=24.26 E-value=3.8 Score=27.53 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=20.1
Q ss_pred CceeEEEEecCcccccchhhhhhhHHHHHhhhc
Q 029530 147 GSKIIKVIFLDPKERNNTEYKLESFSGVYRKLT 179 (192)
Q Consensus 147 Gsk~~KV~~LD~k~~~~ve~Kl~tfs~VYkkLT 179 (192)
|+++.|| .++=...|+|||.+..+|..+-
T Consensus 16 ~~Rl~rV----E~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 16 GARLNRV----EDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 1222358999999999998764
No 18
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=24.18 E-value=1.3e+02 Score=22.65 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=26.3
Q ss_pred EEEEecC--CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 029530 50 IQMDVSG--NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIA 97 (192)
Q Consensus 50 kei~v~~--~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vA 97 (192)
+.+..+. ||-.+|.|.|..--..++... .-+.+|-++|.++.|.||+
T Consensus 27 ~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~-~~l~~l~~~~~~~~v~vi~ 75 (202)
T 1uul_A 27 KKVALTSYKGKWLVLFFYPMDFTFVCPTEI-CQFSDRVKEFSDIGCEVLA 75 (202)
T ss_dssp EEEEGGGGTTSEEEEEECSCTTCSHHHHHH-HHHHHTHHHHHTTTEEEEE
T ss_pred cEEEHHHhCCCeEEEEEECCCCCCcCHHHH-HHHHHHHHHHHHCCCEEEE
Confidence 5566543 677888888754444444322 3345566666544455554
No 19
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=23.34 E-value=1.6e+02 Score=22.14 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=33.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
.++++.+-.....+|..+...+..++....++..+++|+...=+.
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 466666677777888887666778888777788999998866443
No 20
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=22.51 E-value=55 Score=25.61 Aligned_cols=30 Identities=3% Similarity=0.119 Sum_probs=18.8
Q ss_pred hcCcceeeee-----eEEEEecC--CeeEEEEEeehh
Q 029530 39 SDLKDLYINQ-----AIQMDVSG--NRKAIVVYVPYR 68 (192)
Q Consensus 39 ~~Lr~l~i~~-----akei~v~~--~kKAivIfVP~~ 68 (192)
..+.++.+.+ -+.+..+. ||..+|.|.|..
T Consensus 31 ~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~ 67 (220)
T 1zye_A 31 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLD 67 (220)
T ss_dssp SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCT
T ss_pred CCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCC
Confidence 4555666543 26666653 677888888643
No 21
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=22.10 E-value=34 Score=28.70 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHHH
Q 029530 16 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIH 77 (192)
Q Consensus 16 p~e~E~~Vaqal~dLe~~~~dLk~~Lr~l~i~~akei~v~~~kKAivIfVP~~~lk~f~Kiq 77 (192)
|.++-..+.++|.++. .+++.++-|..+.+.+-...+-.. |.|++.|..|++.+
T Consensus 223 ~~~l~~~l~~aL~~~~-~d~~~~~~l~~~g~~gf~~~~~~d-------y~~ir~l~~~~~~~ 276 (321)
T 3p7i_A 223 SETTKDKIYDFFMNYG-KTPEEKAVLERLGWAPFRASSDLQ-------LVPIRQLALFKEMQ 276 (321)
T ss_dssp CHHHHHHHHHHHHHTT-CSHHHHHHHHHHTEEEEEECCGGG-------GHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCHHHHHHHHhcCcCCeeeCCHHH-------HHHHHHHHHHHHHH
Confidence 6789999999999999 568888888888777665554443 77888888887643
No 22
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=21.49 E-value=1.7e+02 Score=21.90 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=25.8
Q ss_pred EEEEecC--CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 029530 50 IQMDVSG--NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIA 97 (192)
Q Consensus 50 kei~v~~--~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vA 97 (192)
+.+..+. ||..+|.|.|...-..++.... -+.+|-++|.++.|.||+
T Consensus 25 ~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~-~l~~l~~~~~~~~v~vv~ 73 (197)
T 1qmv_A 25 KEVKLSDYKGKYVVLFFYPLDFTFVAPTEII-AFSNRAEDFRKLGCEVLG 73 (197)
T ss_dssp EEEEGGGGTTSEEEEEECSCTTSSHHHHHHH-HHHHTHHHHHTTTEEEEE
T ss_pred cEEEHHHHCCCeEEEEEECCCCCCCCHHHHH-HHHHHHHHHHHCCCEEEE
Confidence 5666653 6778888887544444444322 334555566544454444
No 23
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=20.94 E-value=1.7e+02 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
.++++.+-+....+|..+...+..++....++..+++|+...=++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777777888886667778888888889999999866553
Done!