Query 029530
Match_columns 192
No_of_seqs 120 out of 242
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 23:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mh1a_ c.37.1.8 (A:) Rac {Hum 32.5 42 0.0031 23.1 5.5 45 59-103 78-122 (183)
2 d1m7ba_ c.37.1.8 (A:) RhoE (RN 31.4 49 0.0036 22.9 5.8 44 59-102 75-118 (179)
3 d2bcgg2 c.3.1.3 (G:400-446) Gu 28.6 9.2 0.00067 23.9 1.0 24 163-186 21-44 (47)
4 d1z2aa1 c.37.1.8 (A:8-171) Rab 24.4 65 0.0048 21.6 5.2 42 59-101 76-117 (164)
5 d2atxa1 c.37.1.8 (A:9-193) Rho 22.1 82 0.006 21.7 5.5 45 60-104 83-127 (185)
6 d2bmea1 c.37.1.8 (A:6-179) Rab 21.2 89 0.0065 21.0 5.5 44 59-102 79-122 (174)
7 d2cu6a1 d.52.8.2 (A:6-96) Hypo 20.9 31 0.0023 22.7 2.8 70 19-93 2-72 (91)
8 d2cx4a1 c.47.1.10 (A:4-163) Ba 20.8 44 0.0032 22.5 3.7 41 57-98 30-70 (160)
9 d1kmqa_ c.37.1.8 (A:) RhoA {Hu 20.2 98 0.0072 20.8 5.5 45 59-103 75-119 (177)
10 d2f9la1 c.37.1.8 (A:8-182) Rab 16.3 1.3E+02 0.0097 20.1 5.5 44 58-102 77-121 (175)
No 1
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.45 E-value=42 Score=23.14 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=36.7
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
-++++.+=.....+|..+..++..+++...++.++++|+...=+.
T Consensus 78 ~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 466777777788999999988889999888888999999876544
No 2
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.40 E-value=49 Score=22.93 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=37.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
-++++.+-+.-..+|+.+..++...++..-++-++++||...=+
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 57788888888899999999988999988889999999987644
No 3
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.64 E-value=9.2 Score=23.92 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.0
Q ss_pred chhhhhhhHHHHHhhhcCCceEEE
Q 029530 163 NTEYKLESFSGVYRKLTGKDVVFD 186 (192)
Q Consensus 163 ~ve~Kl~tfs~VYkkLTgK~v~Fe 186 (192)
..|.-.+-.-.+|+++||++..|+
T Consensus 21 HFEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 21 HFESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp BSHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hhHHHHHHHHHHHHHhhCCcccee
Confidence 367777778899999999998875
No 4
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.41 E-value=65 Score=21.56 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.3
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 101 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrI 101 (192)
.++++.+-+.-..+|..++ .+..++.+..++.++++||.-.=
T Consensus 76 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~D 117 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKID 117 (164)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGG
T ss_pred ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccCC
Confidence 4666677777788998876 56688888888999999987443
No 5
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.15 E-value=82 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=35.4
Q ss_pred EEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccCC
Q 029530 60 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRP 104 (192)
Q Consensus 60 AivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~k 104 (192)
|+++.+=+....+|..+..+...+++...++..+++|+...=++.
T Consensus 83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 127 (185)
T d2atxa1 83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127 (185)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeecccccc
Confidence 555555566778999998888999988888889999998765543
No 6
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=89 Score=20.96 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=34.5
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (192)
.|+++.+-......|..++..+........++.+++++|.-.=+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 122 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence 47777777777899998888888877777778889888876654
No 7
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=20.94 E-value=31 Score=22.73 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=54.6
Q ss_pred HHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCC-CeE
Q 029530 19 FEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSG-KDV 93 (192)
Q Consensus 19 ~E~~Vaqal~dLe~~~~dLk~~Lr~l~i~~akei~v~~~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg-~~V 93 (192)
+|.+|=+||-... .+++..++-+|-+ ++.|++.+|+-.+.+-.|.+-......|+......|++ ++| ..|
T Consensus 2 le~~v~eaL~~V~--DPe~~~dIv~LGl--V~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~-l~gv~~V 72 (91)
T d2cu6a1 2 LEAQAWALLEAVY--DPELGLDVVNLGL--IYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPGVEEV 72 (91)
T ss_dssp HHHHHHHHHTTCE--ETTTTEETTTTTC--EEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STTCCEE
T ss_pred hHHHHHHHHhcCC--CCCCCcChhhccc--eeEEEEeccccEEEEEcCCCCCcHHHHHHHHHHHHHHc-CCCCceE
Confidence 6888999998887 3677777777666 47888888888888888888888788888888888865 445 444
No 8
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=20.83 E-value=44 Score=22.54 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=27.5
Q ss_pred CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEee
Q 029530 57 NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIAT 98 (192)
Q Consensus 57 ~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAq 98 (192)
||..+++|+|-.....+++ |..-+.++-..|.+..+.+++-
T Consensus 30 gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 30 GRPAVLIFFPAAFSPVCTK-ELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp SSCEEEEECSCTTCHHHHH-HHHHHHHTCTTTSTTCCEEEEE
T ss_pred CCEEEEEecccccCCchhh-hhhhhhcccccccccccccccc
Confidence 6889999988655566655 5555566766776666555544
No 9
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.18 E-value=98 Score=20.85 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=35.4
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029530 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (192)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (192)
-++++.+=+.-..+|..+..+....+++..++-+++++|...=++
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119 (177)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence 366666667778899988888888888887788999999776554
No 10
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.27 E-value=1.3e+02 Score=20.13 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=31.2
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHHhhc-CCCeEEEEeeeccc
Q 029530 58 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKF-SGKDVVLIATRRIV 102 (192)
Q Consensus 58 kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKf-sg~~Vv~vAqRrIl 102 (192)
..|+|+.+-.....+|..++..+ .++.+.+ ++-++++||...=+
T Consensus 77 ~~~~i~v~d~~~~~S~~~~~~~~-~~i~~~~~~~~piilvgnK~Dl 121 (175)
T d2f9la1 77 AVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGNKSDL 121 (175)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHH-HHHHHHSCTTCEEEEEEECTTC
T ss_pred cCeEEEEEECCCcccchhHHHHH-HHHHHhcCCCCcEEEEEeeecc
Confidence 34778888888889999887655 5565554 45578888876544
Done!