BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029531
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus
PE=3 SV=1
Length = 319
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
A VS A+ FG GV + G +F GY++E+SLSVDN+FVFV+IF ++P +YQ
Sbjct: 48 ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQ 105
>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1
Length = 301
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
S+ SV F + A FG+ V + GA A E++ +++E+++S+DN+FV +IF++F
Sbjct: 29 SFKESVLFSLFYLVIACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88
Query: 173 KVPVMYQ 179
K+P YQ
Sbjct: 89 KIPWQYQ 95
>sp|Q52356|TERC_SERMA Tellurium resistance protein TerC OS=Serratia marcescens GN=terC
PE=3 SV=1
Length = 346
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 12/81 (14%)
Query: 111 RESYTSSVKTVA----FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLF 163
R+ S+K+ A F V A+AF GF+ GA AS F GY LE+ LSVDNLF
Sbjct: 32 RDDKPISLKSAALWSVFWVVVAMAFA---GFLYIHHGAEVASLFVTGYALEKVLSVDNLF 88
Query: 164 VFVLIFKYFKVPVMY--QVLY 182
V + IF +F VP Y +VLY
Sbjct: 89 VMMAIFSWFAVPDRYRHRVLY 109
>sp|P0A615|Y2742_MYCBO Uncharacterized membrane protein Mb2742 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb2742 PE=3 SV=1
Length = 397
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 125 VSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
V A+ FG+ V G+ A E+FA Y+ +++LSVDNLFVF++I F VP + Q
Sbjct: 46 VGIAILFGIAVVVFGGSELAVEYFACYLTDEALSVDNLFVFLVIISSFGVPRLAQ 100
>sp|P0A614|Y2723_MYCTU Uncharacterized membrane protein Rv2723/MT2795 OS=Mycobacterium
tuberculosis GN=Rv2723 PE=3 SV=1
Length = 397
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 125 VSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
V A+ FG+ V G+ A E+FA Y+ +++LSVDNLFVF++I F VP + Q
Sbjct: 46 VGIAILFGIAVVVFGGSELAVEYFACYLTDEALSVDNLFVFLVIISSFGVPRLAQ 100
>sp|P18780|TERC_ALCSP Tellurium resistance protein TerC OS=Alcaligenes sp. GN=terC PE=3
SV=1
Length = 346
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 123 FCVSTAVAFGLGVGFI---EGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
F V A+AF GF+ GA AS F GY LE+ LSVDNLFV + IF +F VP Y+
Sbjct: 48 FWVVVAMAFA---GFLYVHHGAEVASLFVTGYALEKVLSVDNLFVMMAIFSWFSVPDRYR 104
>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=alx PE=3 SV=1
Length = 320
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 106 RQIEGRESYTSSVKTVAFCVSTAVAFGLG--------VGFIEGASKASEFFAGYILEQSL 157
R+ E S+ + VS ++ F LG VG S+ F GY+LE++L
Sbjct: 30 RKKEQAMSFRQAAVWSVIWVSLSLLFALGLWWYCRETVGVAVANSQVMAFLTGYLLEKAL 89
Query: 158 SVDNLFVFVLIFKYFKVP 175
+VDN+FV++++F YF +P
Sbjct: 90 AVDNVFVWLMLFSYFAIP 107
>sp|Q4UK32|Y1252_RICFE Uncharacterized membrane protein RF_1252 OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=RF_1252 PE=3 SV=2
Length = 301
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
S+ SV F A FG+ + GA A E++ +++E+++S+DN+FV +IF++F
Sbjct: 29 SFKESVLFSLFYFVIACLFGIYFYYNTGAEHAREYYTCFLIEKAMSLDNIFVISIIFQFF 88
Query: 173 KVPVMYQ 179
K+P YQ
Sbjct: 89 KIPGKYQ 95
>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx
PE=1 SV=2
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
+A F GY++E+SL+VDN+FV++++F YF VP Q
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQ 111
>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3
SV=1
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
+A F GY++E+SL+VDN+FV++++F YF VP Q
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQ 111
>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1
Length = 320
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
+A F GY++E+SL+VDN+FV++++F YF VP Q
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQ 111
>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=alx PE=3 SV=1
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
+A F GY++E+SL+VDN+FV++++F YF VP Q
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQ 111
>sp|Q1RKF1|Y082_RICBR Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0082 PE=3 SV=1
Length = 302
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF 172
S+ S+ F + + FG+ + + GA E++ +++E+++S+DN+FV +IF++F
Sbjct: 29 SFKQSLLFSLFYFTISCLFGIYIYYNMGADSTREYYTCFLIEKAMSLDNIFVISIIFQFF 88
Query: 173 KVPVMYQ 179
K+P YQ
Sbjct: 89 KIPQKYQ 95
>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1
Length = 322
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP 175
+A F GY++E+SL+VDN+FV++++F YF VP
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVP 107
>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1
Length = 322
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVP 175
+A F GY++E+SL+VDN+FV++++F YF VP
Sbjct: 75 QALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVP 107
>sp|Q8K9X4|Y160_BUCAP Uncharacterized membrane protein BUsg_160 OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=BUsg_160 PE=3
SV=1
Length = 310
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 143 KASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
K F Y LE LS+DN+F + IFK K+P++YQ
Sbjct: 68 KIIYFLTSYFLEILLSIDNVFAWFFIFKSLKIPLIYQ 104
>sp|Q89AT3|Y156_BUCBP Uncharacterized membrane protein bbp_156 OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=bbp_156 PE=3
SV=1
Length = 321
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQ 179
F +GY+LEQSLS+DN+ ++ +F+ F + +++Q
Sbjct: 80 FISGYLLEQSLSMDNVAMWFFLFQLFSISMVHQ 112
>sp|P53109|AIM14_YEAST Probable metalloreductase AIM14 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AIM14 PE=1 SV=1
Length = 570
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 70 TEQEDDLSTSEVGRSSSQSHEND-NTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTA 128
+++DLS S ++ S++N TSHSPT + + +++ + S+T S + +F +A
Sbjct: 472 NNEDEDLSISNFNSENADSNDNTPETSHSPTKENGSMIEVKSKHSFTLSNELKSFNNESA 531
>sp|B3LHL3|AIM14_YEAS1 Probable metalloreductase AIM14 OS=Saccharomyces cerevisiae (strain
RM11-1a) GN=AIM14 PE=3 SV=1
Length = 570
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 70 TEQEDDLSTSEVGRSSSQSHEND-NTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTA 128
+++DLS S ++ S++N TSHSPT + + +++ + S+T S + +F +A
Sbjct: 472 NNEDEDLSISNFNSENADSNDNTPETSHSPTKENGSLIEVKSKHSFTLSSELKSFNNESA 531
>sp|A6ZU25|AIM14_YEAS7 Probable metalloreductase AIM14 OS=Saccharomyces cerevisiae (strain
YJM789) GN=AIM14 PE=3 SV=1
Length = 570
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 70 TEQEDDLSTSEVGRSSSQSHEND-NTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTA 128
+++DLS S ++ S++N TSHSPT + + +++ + S+T S + +F +A
Sbjct: 472 NNEDEDLSISNFNSENADSNDNTPETSHSPTKENGSLIEVKSKHSFTLSNELKSFNNESA 531
>sp|C8Z891|AIM14_YEAS8 Probable metalloreductase AIM14 OS=Saccharomyces cerevisiae (strain
Lalvin EC1118 / Prise de mousse) GN=AIM14 PE=3 SV=1
Length = 576
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 70 TEQEDDLSTSEVGRSSSQSHEND-NTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTA 128
+++DLS S ++ S++N TSHSPT + + +++ + S+T S + +F +A
Sbjct: 472 NNEDEDLSISNFNSENADSNDNTPETSHSPTKENGSLIEVKSKHSFTLSNELKSFNNESA 531
>sp|P54086|TATC_SYNY3 Sec-independent protein translocase protein TatC OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=tatC PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 105 ERQIEGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGY---ILEQSLSVDN 161
ER++ G SSV A GLG + A +FF Y ++EQ S+D
Sbjct: 118 ERRLLGPVVLGSSVLFFA---------GLGFAYYALIPAALKFFVSYGADVVEQLWSIDK 168
Query: 162 LFVFVLIFKY-----FKVPVMYQVL 181
F FVL+ + F++P++ VL
Sbjct: 169 YFEFVLLLMFSTGLAFQIPIIQVVL 193
>sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PMS1 PE=1 SV=3
Length = 873
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 8 YSGVQAPHKFDSLLLRFSPTSTSQVP-KLTSLLHFCNSQA-----PTFYSVSHNRRGQYS 61
++ VQ P F +L L S + P K LLH N +A T S +NR+
Sbjct: 306 FNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLH--NERAVIDIFKTTLSDYYNRQELAL 363
Query: 62 PLLACAKGTEQEDDLSTSEVGRSSSQSHENDNTSH 96
P C++ +Q +EV S +HE+DN ++
Sbjct: 364 PKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENY 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,910,418
Number of Sequences: 539616
Number of extensions: 2278535
Number of successful extensions: 7608
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7555
Number of HSP's gapped (non-prelim): 67
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)