Query 029531
Match_columns 192
No_of_seqs 104 out of 666
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 14:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 1.3E-30 2.8E-35 230.2 1.8 84 109-192 27-110 (302)
2 COG0861 TerC Membrane protein 99.2 8.1E-13 1.8E-17 114.7 -1.4 60 131-192 2-63 (254)
3 PRK14013 hypothetical protein; 97.3 9.1E-05 2E-09 67.8 1.1 69 118-191 6-74 (338)
4 COG2899 Uncharacterized protei 96.6 0.00081 1.8E-08 61.6 0.9 76 115-192 4-82 (346)
5 PF12596 Tnp_P_element_C: 87kD 44.2 15 0.00031 29.3 1.6 16 141-156 75-90 (106)
6 KOG2348 Urea transporter [Amin 41.7 29 0.00062 34.9 3.5 43 111-153 547-593 (667)
7 PRK04375 protoheme IX farnesyl 40.5 74 0.0016 27.8 5.6 24 109-132 85-108 (296)
8 PRK09573 (S)-2,3-di-O-geranylg 36.0 98 0.0021 26.6 5.5 27 109-135 76-102 (279)
9 PF06541 DUF1113: Protein of u 34.1 28 0.0006 28.1 1.8 17 143-159 70-86 (157)
10 PRK05951 ubiA prenyltransferas 28.9 1.4E+02 0.003 26.2 5.3 30 109-138 84-113 (296)
11 PRK12883 ubiA prenyltransferas 28.1 2.4E+02 0.0052 24.1 6.6 26 109-134 76-101 (277)
12 PRK12869 ubiA protoheme IX far 27.0 1.3E+02 0.0028 26.1 4.9 25 109-133 77-101 (279)
13 PRK12884 ubiA prenyltransferas 25.9 1.5E+02 0.0032 25.2 4.9 27 109-135 76-102 (279)
14 PRK06080 1,4-dihydroxy-2-napht 25.4 1.1E+02 0.0024 26.2 4.1 27 109-135 81-107 (293)
15 PLN02878 homogentisate phytylt 25.1 1.2E+02 0.0027 27.5 4.5 38 92-135 51-88 (280)
16 COG3763 Uncharacterized protei 23.5 42 0.00092 25.3 1.0 19 121-139 6-24 (71)
17 PRK12882 ubiA prenyltransferas 23.4 1.4E+02 0.0031 25.5 4.4 26 109-134 77-102 (276)
18 PLN03160 uncharacterized prote 23.2 1.2E+02 0.0027 25.8 3.9 21 118-138 41-61 (219)
19 PF07438 DUF1514: Protein of u 22.7 48 0.001 24.7 1.2 34 123-156 1-41 (66)
20 COG1292 BetT Choline-glycine b 22.7 1.5E+02 0.0033 29.5 4.9 60 109-170 128-203 (537)
21 PF07895 DUF1673: Protein of u 22.3 2.3E+02 0.005 24.1 5.4 66 110-184 116-189 (205)
22 PF14029 DUF4244: Protein of u 22.2 96 0.0021 22.2 2.6 36 122-158 21-56 (56)
23 COG3402 Uncharacterized conser 21.5 1.7E+02 0.0037 25.1 4.4 52 125-186 29-80 (161)
24 PRK12895 ubiA prenyltransferas 21.2 1.7E+02 0.0038 26.0 4.6 22 109-130 78-99 (286)
25 PF05473 Herpes_UL45: UL45 pro 20.5 2.6E+02 0.0057 23.8 5.4 20 155-174 120-139 (200)
26 PRK07566 bacteriochlorophyll/c 20.4 4.9E+02 0.011 23.1 7.2 26 109-134 104-129 (314)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=99.96 E-value=1.3e-30 Score=230.23 Aligned_cols=84 Identities=45% Similarity=0.654 Sum_probs=81.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhheeeeCccchhhHHHHHHHHHHhcchhHHHHHHHHhhcCCCccccceeeeeeee
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQVLYKPFSCL 188 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~I~~~~G~~~A~EF~TGYliEkSLSVDNLFVFllIFs~F~VP~~yQ~RVL~wGIl 188 (192)
.+++++|||+.||++|+++|++||+++|++.|.+++.||+|||++|++||+||+|||.+||++|++|+++|||+|+|||+
T Consensus 27 ~~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~ 106 (302)
T TIGR03718 27 AHVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGIL 106 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 029531 189 MIIM 192 (192)
Q Consensus 189 GAI~ 192 (192)
||++
T Consensus 107 gAlv 110 (302)
T TIGR03718 107 GALV 110 (302)
T ss_pred HHHH
Confidence 9974
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.23 E-value=8.1e-13 Score=114.66 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=53.0
Q ss_pred hhhhheeeeCccchh--hHHHHHHHHHHhcchhHHHHHHHHhhcCCCccccceeeeeeeeeecC
Q 029531 131 FGLGVGFIEGASKAS--EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQVLYKPFSCLMIIM 192 (192)
Q Consensus 131 Fg~~I~~~~G~~~A~--EF~TGYliEkSLSVDNLFVFllIFs~F~VP~~yQ~RVL~wGIlGAI~ 192 (192)
|+...|...+.+.+. +|+|+|++|++||+||+||+.+++++|. +++|||+++||+.||++
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp--~~qr~ral~~Gl~~A~v 63 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASKLP--PKQRKKALFIGLAGALV 63 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHH
Confidence 566667666666665 9999999999999999999999999986 99999999999999974
No 3
>PRK14013 hypothetical protein; Provisional
Probab=97.27 E-value=9.1e-05 Score=67.84 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhhhheeeeCccchhhHHHHHHHHHHhcchhHHHHHHHHhhcCCCccccceeeeeeeeeec
Q 029531 118 VKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQVLYKPFSCLMII 191 (192)
Q Consensus 118 l~ws~fwV~LAllFg~~I~~~~G~~~A~EF~TGYliEkSLSVDNLFVFllIFs~F~VP~~yQ~RVL~wGIlGAI 191 (192)
..|+.++..++++-+.++++ .+.....++=-++|-+||+||..|-..+.+ +.|+++|+|.|.|||+.|.
T Consensus 6 f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAv 74 (338)
T PRK14013 6 FRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAV 74 (338)
T ss_pred HhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHH
Confidence 45677776777666666542 355555666667999999999999999988 5799999999999999985
No 4
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.00081 Score=61.62 Aligned_cols=76 Identities=22% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeeeCccchhhHHHHH---HHHHHhcchhHHHHHHHHhhcCCCccccceeeeeeeeeec
Q 029531 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGY---ILEQSLSVDNLFVFVLIFKYFKVPVMYQVLYKPFSCLMII 191 (192)
Q Consensus 115 KeAl~ws~fwV~LAllFg~~I~~~~G~~~A~EF~TGY---liEkSLSVDNLFVFllIFs~F~VP~~yQ~RVL~wGIlGAI 191 (192)
.+-..|+.+-..++++-++|.++..|......++-.- ++|-|||.||-.|=.-|.+- ..+..|||-|.|||+.|.
T Consensus 4 ~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlIAV 81 (346)
T COG2899 4 FRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILIAV 81 (346)
T ss_pred HhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHHHH
Confidence 4456788889999999999998877766555554443 57999999999999999885 468999999999999875
Q ss_pred C
Q 029531 192 M 192 (192)
Q Consensus 192 ~ 192 (192)
+
T Consensus 82 F 82 (346)
T COG2899 82 F 82 (346)
T ss_pred H
Confidence 3
No 5
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=44.23 E-value=15 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=12.9
Q ss_pred ccchhhHHHHHHHHHH
Q 029531 141 ASKASEFFAGYILEQS 156 (192)
Q Consensus 141 ~~~A~EF~TGYliEkS 156 (192)
.+.|+||++||++-|-
T Consensus 75 e~d~l~YiaGyVa~k~ 90 (106)
T PF12596_consen 75 EEDGLEYIAGYVAKKF 90 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678999999998763
No 6
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=41.72 E-value=29 Score=34.86 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhee--eeCcc--chhhHHHHHHH
Q 029531 111 RESYTSSVKTVAFCVSTAVAFGLGVGF--IEGAS--KASEFFAGYIL 153 (192)
Q Consensus 111 ~~s~KeAl~ws~fwV~LAllFg~~I~~--~~G~~--~A~EF~TGYli 153 (192)
++-++.|+.|..+|-.+-.+--+++|= .+|+. ..-.||+||++
T Consensus 547 k~kl~Ra~~i~~~~~li~t~~~viiwP~pmygskyIFSk~fF~gWvi 593 (667)
T KOG2348|consen 547 KKKLNRALRIGIFVSLIITFAFVIIWPLPMYGSKYIFSKLFFTGWVI 593 (667)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccccccCccceeechhhhHHHH
Confidence 337888999988775443333334442 35654 45679999986
No 7
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=40.49 E-value=74 Score=27.81 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=18.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg 132 (192)
+.+.+.|||..+.+++..++++.+
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~ 108 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLL 108 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 568899999999877776666554
No 8
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=36.00 E-value=98 Score=26.57 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~I 135 (192)
+.+.+.|+|..+.++...++++.+.++
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~l 102 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIFI 102 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999998888888766653
No 9
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=34.08 E-value=28 Score=28.13 Aligned_cols=17 Identities=35% Similarity=0.684 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHhcc
Q 029531 143 KASEFFAGYILEQSLSV 159 (192)
Q Consensus 143 ~A~EF~TGYliEkSLSV 159 (192)
.+.||+||+++||.+..
T Consensus 70 t~lEyi~g~~le~~~~~ 86 (157)
T PF06541_consen 70 TALEYITGWILEKLFGA 86 (157)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 37899999999987654
No 10
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=28.92 E-value=1.4e+02 Score=26.25 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=24.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhheee
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFI 138 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~I~~~ 138 (192)
+.+.+.|++..+..+...+|+++|+++.+.
T Consensus 84 ~G~is~~~~~~~~~~~~~ia~~~g~~l~~~ 113 (296)
T PRK05951 84 AGIMTLGHLRVLGIALGAIALQLGWSLVLD 113 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999888888887776543
No 11
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=28.07 E-value=2.4e+02 Score=24.12 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=18.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~ 134 (192)
+.+.+.|+|..+.++..+++++.+..
T Consensus 76 sG~is~~~a~~~~~~l~~~g~~l~~~ 101 (277)
T PRK12883 76 RGAMSRKAALYYSLLLFAVGLALAYL 101 (277)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899998887776666554443
No 12
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=27.00 E-value=1.3e+02 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=17.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGL 133 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~ 133 (192)
..+++.|||..+.++..+++++.+.
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~~ 101 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALGF 101 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999888776555554433
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=25.87 E-value=1.5e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=20.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~I 135 (192)
..+.+.|++....++...++++.+..+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l 102 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI 102 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999888888777777766654
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=25.43 E-value=1.1e+02 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=18.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~I 135 (192)
....+.|++..+...+.+++++.|+++
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l 107 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYL 107 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888998887777777666655543
No 15
>PLN02878 homogentisate phytyltransferase
Probab=25.14 E-value=1.2e+02 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCCCCCCcccCcccccccccccHHHHHHHHHHHHHHHHHhhhhh
Q 029531 92 DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (192)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~s~KeAl~ws~fwV~LAllFg~~I 135 (192)
|+.|..-+..+ +.+.|.|+|...++++.+++++.+..+
T Consensus 51 DkINkP~rPIp------SG~iS~~~a~~~~~~~~~lg~~la~~~ 88 (280)
T PLN02878 51 DKVNKPYLPLA------SGEFSVATGVAIVTSFAIMSFGMGWIV 88 (280)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446677 458999999988888777776665543
No 16
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.48 E-value=42 Score=25.29 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhheeee
Q 029531 121 VAFCVSTAVAFGLGVGFIE 139 (192)
Q Consensus 121 s~fwV~LAllFg~~I~~~~ 139 (192)
.++|+.+|+++|++.+++.
T Consensus 6 ail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 6 AILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999887653
No 17
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=23.36 E-value=1.4e+02 Score=25.47 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=19.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~ 134 (192)
+.+.+.|||..++++...++++.+..
T Consensus 77 ~G~is~~~a~~~~~~l~~~g~~~~~~ 102 (276)
T PRK12882 77 SGAVSPRGALAFSILLFAAGVALAFL 102 (276)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999998888777777766554
No 18
>PLN03160 uncharacterized protein; Provisional
Probab=23.24 E-value=1.2e+02 Score=25.82 Aligned_cols=21 Identities=14% Similarity=-0.206 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhhheee
Q 029531 118 VKTVAFCVSTAVAFGLGVGFI 138 (192)
Q Consensus 118 l~ws~fwV~LAllFg~~I~~~ 138 (192)
.+-+++.+.+|+++++++|..
T Consensus 41 ~~~~a~~l~l~~v~~~l~~~v 61 (219)
T PLN03160 41 GCITATLLILATTILVLVFTV 61 (219)
T ss_pred HHHHHHHHHHHHHHHheeeEE
Confidence 333455666677888887754
No 19
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=22.75 E-value=48 Score=24.73 Aligned_cols=34 Identities=9% Similarity=0.279 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhheeeeCc-------cchhhHHHHHHHHHH
Q 029531 123 FCVSTAVAFGLGVGFIEGA-------SKASEFFAGYILEQS 156 (192)
Q Consensus 123 fwV~LAllFg~~I~~~~G~-------~~A~EF~TGYliEkS 156 (192)
+|+.+++++++.+-+..+. -.|.+|..-|+..+-
T Consensus 1 MWIiiSIvLai~lLI~l~~ns~lr~eiealkY~N~yL~~~~ 41 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVNSELRKEIEALKYMNDYLFDQF 41 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888877765543 356788888887654
No 20
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.72 E-value=1.5e+02 Score=29.46 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=38.9
Q ss_pred cccccHHHHHHHH---------HHHHHHHHHhhhhheeeeCc-cchhhHHHHHHHHHHh------cchhHHHHHHHHh
Q 029531 109 EGRESYTSSVKTV---------AFCVSTAVAFGLGVGFIEGA-SKASEFFAGYILEQSL------SVDNLFVFVLIFK 170 (192)
Q Consensus 109 ~~~~s~KeAl~ws---------~fwV~LAllFg~~I~~~~G~-~~A~EF~TGYliEkSL------SVDNLFVFllIFs 170 (192)
++++..++|+.++ ++|..+|++++...|- .|. ..-..=+..-+=|+ - .||.++++..||.
T Consensus 128 ~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~r-k~~pl~lss~l~Pllg~~-~~G~~G~~IDi~aiiaTl~G 203 (537)
T COG1292 128 NTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYR-KGLPLLLSSALYPLLGER-IKGPIGHAVDILAIIATLFG 203 (537)
T ss_pred CCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEe-cCCCchhhhhhhhhhccc-ccCccchhhHHHHHHHHHHH
Confidence 5677788998887 5788899999884433 332 22222223333344 3 6899999998885
No 21
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=22.31 E-value=2.3e+02 Score=24.12 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=45.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhhhee--------eeCccchhhHHHHHHHHHHhcchhHHHHHHHHhhcCCCccccce
Q 029531 110 GRESYTSSVKTVAFCVSTAVAFGLGVGF--------IEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQVL 181 (192)
Q Consensus 110 ~~~s~KeAl~ws~fwV~LAllFg~~I~~--------~~G~~~A~EF~TGYliEkSLSVDNLFVFllIFs~F~VP~~yQ~R 181 (192)
++.+.|.-..|.++.+.+++++..++.. ..+.+.-.-|++|-++ ++|+..|..+-.-++||++
T Consensus 116 ~~~~~k~~~~~~l~~i~~~i~l~~~~~~~~~~~~~~~~~~~~~~sfl~g~~~---------~~wl~y~q~iywekkn~~~ 186 (205)
T PF07895_consen 116 IRNSNKKKRFRLLLVIILLIILVMFFLYFILGQIESFISFQSLLSFLSGLLL---------LMWLVYFQIIYWEKKNHKI 186 (205)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHheeeccCceE
Confidence 3445555557888888888877766543 2234445556666653 4788889999999999998
Q ss_pred eee
Q 029531 182 YKP 184 (192)
Q Consensus 182 VL~ 184 (192)
+..
T Consensus 187 i~~ 189 (205)
T PF07895_consen 187 IYI 189 (205)
T ss_pred EEE
Confidence 765
No 22
>PF14029 DUF4244: Protein of unknown function (DUF4244)
Probab=22.22 E-value=96 Score=22.22 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhheeeeCccchhhHHHHHHHHHHhc
Q 029531 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLS 158 (192)
Q Consensus 122 ~fwV~LAllFg~~I~~~~G~~~A~EF~TGYliEkSLS 158 (192)
++=...|+.|++++|...-++.-..-+++ ++|++||
T Consensus 21 AvgtlAA~afA~vL~~vvts~~v~~~L~~-ii~~ALs 56 (56)
T PF14029_consen 21 AVGTLAAAAFAGVLYKVVTSDEVRSALTG-IIERALS 56 (56)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHcC
Confidence 45567789999999988777777777776 5677765
No 23
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=1.7e+02 Score=25.05 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHhhhhheeeeCccchhhHHHHHHHHHHhcchhHHHHHHHHhhcCCCccccceeeeee
Q 029531 125 VSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQVLYKPFS 186 (192)
Q Consensus 125 V~LAllFg~~I~~~~G~~~A~EF~TGYliEkSLSVDNLFVFllIFs~F~VP~~yQ~RVL~wG 186 (192)
.++|+.++++.|+..+.-.-.-+-+ -=++++.+|+.-|-+|..+.+|+-.|-
T Consensus 29 Ll~av~~~~~~~~~~~~~~w~~~a~----------~av~l~~~vv~l~iiP~~~Ryr~wry~ 80 (161)
T COG3402 29 LLIAVAAGVLLYFVGLDPNWSSVAA----------VAVILLAAVVTLFIIPQLVRYRVWRYE 80 (161)
T ss_pred HHHHHHHHHHHheeccCCccHHHHH----------HHHHHHHHHHHhhhhhHHHhhhhheee
Confidence 3445556666665544333222222 235788899999999987777665553
No 24
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=21.17 E-value=1.7e+02 Score=26.05 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=17.7
Q ss_pred cccccHHHHHHHHHHHHHHHHH
Q 029531 109 EGRESYTSSVKTVAFCVSTAVA 130 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAll 130 (192)
+.++|.|||..+++++..++++
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~ 99 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEI 99 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999887776654
No 25
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=20.54 E-value=2.6e+02 Score=23.79 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=11.2
Q ss_pred HHhcchhHHHHHHHHhhcCC
Q 029531 155 QSLSVDNLFVFVLIFKYFKV 174 (192)
Q Consensus 155 kSLSVDNLFVFllIFs~F~V 174 (192)
..++++|.=.++-+...++.
T Consensus 120 ~L~~~~~~~~L~~ll~~~~~ 139 (200)
T PF05473_consen 120 TLANVNNAKSLLELLDVLNN 139 (200)
T ss_pred cCCCchhHHHHHHHHHHhcc
Confidence 34666665555555555554
No 26
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=20.43 E-value=4.9e+02 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=19.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhh
Q 029531 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (192)
Q Consensus 109 ~~~~s~KeAl~ws~fwV~LAllFg~~ 134 (192)
+...+.|++..+.++...+|++.+..
T Consensus 104 sG~is~~~a~~~~~~l~~~~~~l~~~ 129 (314)
T PRK07566 104 SGAISLRWVLYLIAVLTVLGLAVAYL 129 (314)
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899988888777777765554
Done!