Query 029531
Match_columns 192
No_of_seqs 104 out of 666
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 23:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdp_B Sodium/potassium-transp 22.5 47 0.0016 28.7 2.6 25 114-138 16-40 (286)
2 2ls4_A High affinity copper up 27.0 20 0.00067 21.3 0.0 20 123-142 3-23 (26)
3 3ixz_B Potassium-transporting 17.9 62 0.0021 28.0 2.3 25 114-138 38-62 (290)
4 2wh0_Q Pkcev3, protein kinase 16.7 40 0.0014 20.8 0.6 7 155-161 24-30 (31)
5 2zxe_B Na+,K+-ATPase beta subu 16.0 74 0.0025 27.8 2.4 25 114-138 34-58 (305)
6 4erc_A Dual specificity protei 15.5 56 0.0019 23.0 1.2 51 133-183 91-142 (150)
7 4grv_A Neurotensin receptor ty 13.5 3.6E+02 0.012 22.9 6.0 12 155-166 75-86 (510)
8 2img_A Dual specificity protei 13.4 69 0.0024 22.4 1.3 49 134-182 93-142 (151)
9 3s4o_A Protein tyrosine phosph 12.4 65 0.0022 22.9 0.9 47 133-180 112-159 (167)
10 3rgo_A Protein-tyrosine phosph 10.4 1E+02 0.0036 21.7 1.4 50 133-182 92-142 (157)
No 1
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=22.46 E-value=47 Score=28.69 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheee
Q 029531 114 YTSSVKTVAFCVSTAVAFGLGVGFI 138 (192)
Q Consensus 114 ~KeAl~ws~fwV~LAllFg~~I~~~ 138 (192)
.+-.+...+||+.||.+|++.+|.+
T Consensus 16 ~~IllFYliFY~~La~lFa~~m~v~ 40 (286)
T 3kdp_B 16 FKILLFYVIFYGCLAGIFIGTIQVM 40 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999875
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=27.04 E-value=20 Score=21.31 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhheeee-Ccc
Q 029531 123 FCVSTAVAFGLGVGFIE-GAS 142 (192)
Q Consensus 123 fwV~LAllFg~~I~~~~-G~~ 142 (192)
.|+.+|++.|..++++. |.+
T Consensus 3 g~l~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYFLFSWK 23 (26)
Confidence 48899999998887653 443
No 3
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=17.91 E-value=62 Score=28.01 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheee
Q 029531 114 YTSSVKTVAFCVSTAVAFGLGVGFI 138 (192)
Q Consensus 114 ~KeAl~ws~fwV~LAllFg~~I~~~ 138 (192)
.+-.+...+||+.||.+|++.+|.+
T Consensus 38 ~~IllFYliFY~~LaglFa~~m~v~ 62 (290)
T 3ixz_B 38 VWISLYYVAFYVVMSGIFALCIYVL 62 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777799999999999998863
No 4
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=16.67 E-value=40 Score=20.78 Aligned_cols=7 Identities=57% Similarity=0.828 Sum_probs=2.9
Q ss_pred HHhcchh
Q 029531 155 QSLSVDN 161 (192)
Q Consensus 155 kSLSVDN 161 (192)
|+||.||
T Consensus 24 kalsfdn 30 (31)
T 2wh0_Q 24 KALSFDN 30 (31)
T ss_pred HHhcccc
Confidence 3444443
No 5
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=16.00 E-value=74 Score=27.76 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheee
Q 029531 114 YTSSVKTVAFCVSTAVAFGLGVGFI 138 (192)
Q Consensus 114 ~KeAl~ws~fwV~LAllFg~~I~~~ 138 (192)
.|-.+...+||+.||.+|.+.+|.+
T Consensus 34 ~~IllFYliFY~~La~lF~~~m~v~ 58 (305)
T 2zxe_B 34 FKIFLFYLIFYGCLAGIFIGTIQVL 58 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777899999999999988754
No 6
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=15.48 E-value=56 Score=22.99 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=38.8
Q ss_pred hhheeeeCccchhhHHHHHHHH-HHhcchhHHHHHHHHhhcCCCccccceee
Q 029531 133 LGVGFIEGASKASEFFAGYILE-QSLSVDNLFVFVLIFKYFKVPVMYQVLYK 183 (192)
Q Consensus 133 ~~I~~~~G~~~A~EF~TGYliE-kSLSVDNLFVFllIFs~F~VP~~yQ~RVL 183 (192)
++|....|...+.-+.+.|++. +-++++..+-.+---..-.+|...|.+.|
T Consensus 91 vlVHC~~G~~Rsg~~~a~~l~~~~~~~~~~a~~~vr~~R~~~~~~~~q~~~l 142 (150)
T 4erc_A 91 VGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAV 142 (150)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 3444567888999999999987 78899998888777777777766665543
No 7
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=13.54 E-value=3.6e+02 Score=22.90 Aligned_cols=12 Identities=25% Similarity=0.658 Sum_probs=7.9
Q ss_pred HHhcchhHHHHH
Q 029531 155 QSLSVDNLFVFV 166 (192)
Q Consensus 155 kSLSVDNLFVFl 166 (192)
-+|++-++.+.+
T Consensus 75 ~~La~aDll~~~ 86 (510)
T 4grv_A 75 GSLALSDLLILL 86 (510)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477777776544
No 8
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=13.44 E-value=69 Score=22.35 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=38.1
Q ss_pred hheeeeCccchhhHHHHHHHHH-HhcchhHHHHHHHHhhcCCCcccccee
Q 029531 134 GVGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQVLY 182 (192)
Q Consensus 134 ~I~~~~G~~~A~EF~TGYliEk-SLSVDNLFVFllIFs~F~VP~~yQ~RV 182 (192)
+|....|...+.-+.+.|++.. -++++..+-.+---..-.+|...|.+.
T Consensus 93 lVHC~aG~~Rsg~~~~~~l~~~~~~~~~~a~~~~r~~R~~~~~~~~q~~~ 142 (151)
T 2img_A 93 GVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKA 142 (151)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCSCSHHHHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 3444578899999999999988 889999888877777777777666543
No 9
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=12.44 E-value=65 Score=22.90 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=34.9
Q ss_pred hhheeeeCccchhhHHHHHHHHH-HhcchhHHHHHHHHhhcCCCccccc
Q 029531 133 LGVGFIEGASKASEFFAGYILEQ-SLSVDNLFVFVLIFKYFKVPVMYQV 180 (192)
Q Consensus 133 ~~I~~~~G~~~A~EF~TGYliEk-SLSVDNLFVFllIFs~F~VP~~yQ~ 180 (192)
++|-...|...+.-+.+.|++++ -++++..+-.+--...-.|. ..|.
T Consensus 112 vlVHC~aG~~RTg~~~a~~L~~~~~~~~~~a~~~vr~~R~~~v~-~~Q~ 159 (167)
T 3s4o_A 112 IGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAIN-QTQM 159 (167)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHTTCCCHHHHHHHHHHHSTTCSC-HHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCCC-HHHH
Confidence 34444679999999999999998 89999987776655555554 3443
No 10
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=10.37 E-value=1e+02 Score=21.71 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=36.6
Q ss_pred hhheeeeCccchhhHHHHHHHH-HHhcchhHHHHHHHHhhcCCCcccccee
Q 029531 133 LGVGFIEGASKASEFFAGYILE-QSLSVDNLFVFVLIFKYFKVPVMYQVLY 182 (192)
Q Consensus 133 ~~I~~~~G~~~A~EF~TGYliE-kSLSVDNLFVFllIFs~F~VP~~yQ~RV 182 (192)
++|....|...+.-+.++|++. +-+|++..+-.+---..-.+|...|.+.
T Consensus 92 vlVHC~~G~~Rsg~~~~a~l~~~~~~~~~~a~~~v~~~R~~~~~~~~~~~~ 142 (157)
T 3rgo_A 92 VYVHCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEV 142 (157)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 4444567888889999999997 6788888877776666556666655543
Done!