Query 029531
Match_columns 192
No_of_seqs 104 out of 666
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 23:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 16.6 54 0.0039 19.1 2.7 24 145-171 10-33 (34)
2 d1jfia_ a.22.1.3 (A:) Negative 14.7 37 0.0027 21.0 1.7 16 143-158 31-46 (66)
3 d2v0fa1 d.76.2.1 (A:2629-2715) 10.7 45 0.0033 23.0 1.3 18 167-184 60-77 (87)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 7.6 1.6E+02 0.012 17.3 2.8 21 115-135 14-35 (37)
5 d1rxda_ c.45.1.1 (A:) Protein 6.9 82 0.0059 21.0 1.4 32 133-164 92-123 (152)
6 d1c3da_ a.102.4.4 (A:) C3D, a 6.5 75 0.0055 22.8 1.0 16 140-155 77-92 (294)
7 d1iyjb3 b.40.4.3 (B:2599-2731) 6.1 1.7E+02 0.012 20.9 2.8 37 9-46 94-131 (133)
8 d1r89a1 a.160.1.3 (A:143-257) 6.0 57 0.0042 23.5 0.1 17 139-155 19-35 (115)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.1 1.4E+02 0.01 18.4 1.7 27 115-141 6-32 (57)
10 d1xlya_ a.232.1.1 (A:) RNA-bin 5.0 1.1E+02 0.0079 24.4 1.1 14 148-162 149-162 (232)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=16.64 E-value=54 Score=19.05 Aligned_cols=24 Identities=29% Similarity=0.712 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHhcchhHHHHHHHHhh
Q 029531 145 SEFFAGYILEQSLSVDNLFVFVLIFKY 171 (192)
Q Consensus 145 ~EF~TGYliEkSLSVDNLFVFllIFs~ 171 (192)
+.|=-||+ +.|+.-+|||+.+..|
T Consensus 10 layekgwl---afslamlfvfialiay 33 (34)
T d1xmeb2 10 LAYEKGWL---AFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHhhHH---HHHHHHHHHHHHHHhc
Confidence 34555665 4566778888877654
No 2
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.68 E-value=37 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHHhc
Q 029531 143 KASEFFAGYILEQSLS 158 (192)
Q Consensus 143 ~A~EF~TGYliEkSLS 158 (192)
+|.|+|..|++|++--
T Consensus 31 ~a~E~Fi~~l~~~A~~ 46 (66)
T d1jfia_ 31 RALELFLESLLKKACQ 46 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999998753
No 3
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.68 E-value=45 Score=23.01 Aligned_cols=18 Identities=11% Similarity=-0.155 Sum_probs=14.7
Q ss_pred HHHhhcCCCccccceeee
Q 029531 167 LIFKYFKVPVMYQVLYKP 184 (192)
Q Consensus 167 lIFs~F~VP~~yQ~RVL~ 184 (192)
++++.+..|+.+|+|||.
T Consensus 60 ~vk~~g~lpe~~~~R~l~ 77 (87)
T d2v0fa1 60 IVKQSGFVPESMFDRLLT 77 (87)
T ss_dssp HHHHHSSSCGGGGGGSCC
T ss_pred HHhhcCcCcHHHhhcccC
Confidence 456888899999999884
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.57 E-value=1.6e+02 Score=17.29 Aligned_cols=21 Identities=14% Similarity=0.051 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH-HHHHHhhhhh
Q 029531 115 TSSVKTVAFCV-STAVAFGLGV 135 (192)
Q Consensus 115 KeAl~ws~fwV-~LAllFg~~I 135 (192)
|.++.|...-| .+|++|+-+.
T Consensus 14 rtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 88999986554 5788887654
No 5
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}
Probab=6.94 E-value=82 Score=21.04 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.4
Q ss_pred hhheeeeCccchhhHHHHHHHHHHhcchhHHH
Q 029531 133 LGVGFIEGASKASEFFAGYILEQSLSVDNLFV 164 (192)
Q Consensus 133 ~~I~~~~G~~~A~EF~TGYliEkSLSVDNLFV 164 (192)
++|--..|...+.-+.+.|++++-+|+++.+=
T Consensus 92 v~VHC~~G~gRsg~~~a~~l~~~~~~~~~av~ 123 (152)
T d1rxda_ 92 IAVHCVAGLGRAPVLVALALIEGGMKYEDAVQ 123 (152)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEEEEcCCcccHHHHHHHHHHHhCcCHHHHHH
Confidence 44555689999999999999999999888643
No 6
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.53 E-value=75 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=12.8
Q ss_pred CccchhhHHHHHHHHH
Q 029531 140 GASKASEFFAGYILEQ 155 (192)
Q Consensus 140 G~~~A~EF~TGYliEk 155 (192)
|...+..|+|.|+++-
T Consensus 77 ~~~~~~~~lTayv~~~ 92 (294)
T d1c3da_ 77 VKRAPSTWLTAYVVKV 92 (294)
T ss_dssp TTSCCCHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHH
Confidence 5566789999999974
No 7
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.10 E-value=1.7e+02 Score=20.87 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=26.0
Q ss_pred cCccCCCcc-ceeeEEeccCCcccCCCccccccccCCCC
Q 029531 9 SGVQAPHKF-DSLLLRFSPTSTSQVPKLTSLLHFCNSQA 46 (192)
Q Consensus 9 ~~~~~p~~~-d~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 46 (192)
.+--.|+.- |++.|+++ .+++.+-.|.++|-|+.-+.
T Consensus 94 ~~~~sPLE~~~s~~L~i~-~Nstr~a~w~~kLGf~~~p~ 131 (133)
T d1iyjb3 94 PDACAPLEAPDSLRLKIS-ANSTRPARWHSKLGFFHDPR 131 (133)
T ss_dssp CSCCCGGGCCSSCEEECC-TTTEEECCSSSCSEECSCCS
T ss_pred CCCcCcccccCccEEEEe-ecceeeccccccCcccCCCC
Confidence 344566655 88889988 44445558999999987543
No 8
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.01 E-value=57 Score=23.48 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=14.9
Q ss_pred eCccchhhHHHHHHHHH
Q 029531 139 EGASKASEFFAGYILEQ 155 (192)
Q Consensus 139 ~G~~~A~EF~TGYliEk 155 (192)
+|++...+=|+||+.|-
T Consensus 19 YGaE~~~~GFSGYl~El 35 (115)
T d1r89a1 19 YGAEYKVRGFSGYLCEL 35 (115)
T ss_dssp BCCSTTTCCBCHHHHHH
T ss_pred cchHhhcCcchhHHHHH
Confidence 38899999999999995
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.14 E-value=1.4e+02 Score=18.37 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeeeCc
Q 029531 115 TSSVKTVAFCVSTAVAFGLGVGFIEGA 141 (192)
Q Consensus 115 KeAl~ws~fwV~LAllFg~~I~~~~G~ 141 (192)
|+...-.++.+.+-++|+..+|+....
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666667777777788888886543
No 10
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.96 E-value=1.1e+02 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcchhH
Q 029531 148 FAGYILEQSLSVDNL 162 (192)
Q Consensus 148 ~TGYliEkSLSVDNL 162 (192)
|+-|++| ||++||=
T Consensus 149 ftQW~iE-Sl~i~~~ 162 (232)
T d1xlya_ 149 FSQWMIE-SLRIGSN 162 (232)
T ss_dssp HHHHHHH-HTTCCCG
T ss_pred HHHHHHH-HhcCCCc
Confidence 6889999 9999873
Done!