Query 029532
Match_columns 192
No_of_seqs 189 out of 1734
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 14:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 1.4E-35 2.9E-40 226.0 21.2 187 1-188 10-197 (197)
2 PRK03767 NAD(P)H:quinone oxido 100.0 5.8E-35 1.3E-39 223.2 22.0 188 1-189 11-199 (200)
3 KOG3135 1,4-benzoquinone reduc 100.0 1E-33 2.2E-38 202.4 18.1 189 1-190 11-202 (203)
4 COG0655 WrbA Multimeric flavod 100.0 6.1E-28 1.3E-32 185.4 17.2 187 2-189 13-206 (207)
5 PRK05569 flavodoxin; Provision 99.9 2.2E-23 4.7E-28 150.9 15.5 128 1-182 11-140 (141)
6 PRK05568 flavodoxin; Provision 99.9 2.7E-23 5.8E-28 150.5 15.0 129 1-183 11-141 (142)
7 PRK11921 metallo-beta-lactamas 99.9 1.6E-23 3.5E-28 175.1 14.3 135 1-185 257-393 (394)
8 PRK06756 flavodoxin; Provision 99.9 8.5E-23 1.8E-27 149.0 15.2 136 1-185 11-147 (148)
9 PRK05452 anaerobic nitric oxid 99.9 4.1E-23 8.8E-28 176.0 14.7 136 1-186 261-397 (479)
10 TIGR01753 flav_short flavodoxi 99.9 4.2E-22 9.2E-27 143.6 14.2 131 1-182 8-140 (140)
11 PRK06703 flavodoxin; Provision 99.9 3.1E-21 6.6E-26 141.2 14.3 138 1-188 11-150 (151)
12 COG0426 FpaA Uncharacterized f 99.9 9.8E-22 2.1E-26 160.4 12.8 133 1-183 256-388 (388)
13 PRK06242 flavodoxin; Provision 99.9 2.1E-21 4.6E-26 141.8 12.2 137 2-184 12-149 (150)
14 PF03358 FMN_red: NADPH-depend 99.9 6.8E-22 1.5E-26 144.7 8.2 128 2-134 13-143 (152)
15 PRK07308 flavodoxin; Validated 99.9 2.1E-20 4.5E-25 136.1 14.1 134 1-184 11-145 (146)
16 TIGR03566 FMN_reduc_MsuE FMN r 99.8 4.5E-20 9.8E-25 138.1 12.1 159 1-185 11-171 (174)
17 PRK10569 NAD(P)H-dependent FMN 99.8 1.3E-19 2.8E-24 137.3 13.9 160 2-186 13-173 (191)
18 TIGR03567 FMN_reduc_SsuE FMN r 99.8 9E-19 2E-23 130.7 12.5 158 2-183 12-170 (171)
19 PRK09267 flavodoxin FldA; Vali 99.7 1.9E-16 4.2E-21 117.9 16.5 152 1-183 11-165 (169)
20 PRK00170 azoreductase; Reviewe 99.7 2.6E-17 5.6E-22 125.7 11.9 129 3-133 16-171 (201)
21 TIGR02690 resist_ArsH arsenica 99.7 2.6E-16 5.6E-21 121.0 15.4 162 3-189 40-204 (219)
22 PRK01355 azoreductase; Reviewe 99.7 8.3E-17 1.8E-21 122.9 12.0 131 2-132 16-164 (199)
23 PRK09271 flavodoxin; Provision 99.7 3.2E-16 6.9E-21 115.7 11.9 134 1-185 10-147 (160)
24 PRK09739 hypothetical protein; 99.7 1.1E-16 2.5E-21 122.2 7.9 107 2-109 16-133 (199)
25 TIGR01752 flav_long flavodoxin 99.7 2E-15 4.3E-20 112.3 13.8 117 1-144 9-128 (167)
26 PRK13556 azoreductase; Provisi 99.7 1E-15 2.2E-20 117.7 12.4 132 2-133 16-177 (208)
27 PRK12359 flavodoxin FldB; Prov 99.7 4.3E-15 9.2E-20 110.5 14.6 128 1-155 10-142 (172)
28 PRK06934 flavodoxin; Provision 99.6 1.1E-15 2.4E-20 117.4 8.7 110 1-123 69-184 (221)
29 TIGR01754 flav_RNR ribonucleot 99.6 1.5E-14 3.3E-19 104.5 11.5 99 1-125 10-112 (140)
30 PF02525 Flavodoxin_2: Flavodo 99.6 4.8E-14 1E-18 107.6 11.1 129 2-133 14-173 (199)
31 PF12682 Flavodoxin_4: Flavodo 99.6 3.1E-14 6.8E-19 104.5 9.3 110 1-123 9-128 (156)
32 PF00258 Flavodoxin_1: Flavodo 99.5 6.2E-14 1.3E-18 101.4 9.6 116 1-135 6-126 (143)
33 PRK13555 azoreductase; Provisi 99.5 5.3E-13 1.2E-17 102.4 13.2 129 3-131 17-175 (208)
34 PRK11104 hemG protoporphyrinog 99.5 1.3E-13 2.9E-18 103.3 8.0 79 1-106 10-88 (177)
35 COG0431 Predicted flavoprotein 99.5 2.3E-13 4.9E-18 102.7 8.7 120 3-134 14-137 (184)
36 PF12724 Flavodoxin_5: Flavodo 99.5 2.1E-13 4.6E-18 98.8 7.4 83 1-110 7-89 (143)
37 PRK07116 flavodoxin; Provision 99.4 9E-13 2E-17 97.3 9.6 109 1-122 12-130 (160)
38 PRK09004 FMN-binding protein M 99.4 3.4E-12 7.3E-17 92.8 12.2 109 1-134 11-120 (146)
39 PF12641 Flavodoxin_3: Flavodo 99.4 4E-11 8.7E-16 88.2 13.5 73 1-108 7-79 (160)
40 COG0716 FldA Flavodoxins [Ener 99.3 4.4E-11 9.5E-16 87.5 13.3 138 1-184 11-150 (151)
41 KOG4530 Predicted flavoprotein 99.3 1.7E-11 3.8E-16 87.8 9.9 114 8-130 29-149 (199)
42 PRK04930 glutathione-regulated 99.3 2.2E-11 4.8E-16 91.4 10.8 103 21-133 33-150 (184)
43 COG1182 AcpD Acyl carrier prot 99.3 9E-11 1.9E-15 88.0 12.5 131 2-132 15-173 (202)
44 PRK08105 flavodoxin; Provision 99.3 1.8E-10 3.8E-15 84.0 12.4 111 1-134 11-122 (149)
45 PRK00871 glutathione-regulated 99.2 8.7E-11 1.9E-15 87.7 9.4 101 23-133 29-142 (176)
46 COG2249 MdaB Putative NADPH-qu 99.2 5.7E-11 1.2E-15 89.7 8.1 102 5-108 15-125 (189)
47 COG4635 HemG Flavodoxin [Energ 99.1 1.4E-10 2.9E-15 83.5 5.2 100 1-126 10-111 (175)
48 PRK05723 flavodoxin; Provision 99.0 1.6E-08 3.5E-13 73.8 12.7 109 1-133 10-122 (151)
49 PRK10953 cysJ sulfite reductas 98.9 4.1E-08 8.8E-13 86.3 12.6 111 1-133 71-182 (600)
50 TIGR01931 cysJ sulfite reducta 98.8 8.4E-08 1.8E-12 84.5 12.3 111 1-133 68-179 (597)
51 TIGR00333 nrdI ribonucleoside- 98.5 3.2E-06 6.8E-11 59.6 10.4 68 1-107 6-74 (125)
52 PRK03600 nrdI ribonucleotide r 98.4 5E-06 1.1E-10 59.4 10.0 113 1-181 10-128 (134)
53 PRK02551 flavoprotein NrdI; Pr 96.3 0.06 1.3E-06 39.4 9.0 81 1-105 11-103 (154)
54 KOG1159 NADP-dependent flavopr 95.1 0.14 3.1E-06 43.9 8.0 110 1-131 10-121 (574)
55 PF07972 Flavodoxin_NdrI: NrdI 94.6 0.16 3.4E-06 35.7 6.1 71 1-105 6-81 (122)
56 COG1780 NrdI Protein involved 92.9 1.7 3.7E-05 31.0 8.8 95 57-188 37-136 (141)
57 COG1445 FrwB Phosphotransferas 87.4 1.8 3.9E-05 30.2 5.0 50 4-69 16-66 (122)
58 COG0369 CysJ Sulfite reductase 86.0 2 4.4E-05 38.2 5.8 110 1-132 57-167 (587)
59 COG1440 CelA Phosphotransferas 83.4 6 0.00013 26.7 5.8 74 4-109 13-88 (102)
60 PRK13143 hisH imidazole glycer 81.5 4.3 9.3E-05 30.8 5.4 14 55-68 34-47 (200)
61 PRK10499 PTS system N,N'-diace 79.7 16 0.00036 24.7 8.1 86 4-125 15-102 (106)
62 cd05565 PTS_IIB_lactose PTS_II 79.5 2.2 4.9E-05 28.7 2.8 68 4-103 12-79 (99)
63 TIGR01692 HIBADH 3-hydroxyisob 74.2 32 0.00069 27.5 8.7 108 8-136 7-117 (288)
64 TIGR00829 FRU PTS system, fruc 73.2 13 0.00029 24.1 5.2 51 4-69 12-62 (85)
65 PRK11538 ribosome-associated p 73.0 9.9 0.00021 25.9 4.6 53 5-85 3-55 (105)
66 PRK06895 putative anthranilate 71.3 15 0.00033 27.5 5.8 37 12-69 17-54 (190)
67 PRK09212 pyruvate dehydrogenas 69.4 30 0.00065 28.5 7.6 70 2-85 209-279 (327)
68 PRK14619 NAD(P)H-dependent gly 69.0 58 0.0013 26.3 9.2 53 8-85 15-67 (308)
69 PF03575 Peptidase_S51: Peptid 67.9 6.9 0.00015 28.3 3.2 40 10-66 3-42 (154)
70 cd03142 GATase1_ThuA Type 1 gl 66.5 27 0.00058 27.0 6.3 61 8-86 24-86 (215)
71 PRK00961 H(2)-dependent methyl 65.7 72 0.0016 25.9 9.7 31 54-86 136-167 (342)
72 TIGR01019 sucCoAalpha succinyl 65.7 67 0.0015 26.0 8.7 106 2-135 12-122 (286)
73 PRK12490 6-phosphogluconate de 65.0 72 0.0016 25.7 10.4 106 8-136 11-121 (299)
74 PF09822 ABC_transp_aux: ABC-t 64.9 26 0.00056 27.7 6.3 69 55-132 192-266 (271)
75 cd01748 GATase1_IGP_Synthase T 64.7 23 0.00049 26.6 5.7 38 2-68 8-45 (198)
76 cd05564 PTS_IIB_chitobiose_lic 64.6 8.5 0.00018 25.6 2.9 69 4-104 11-79 (96)
77 PF01210 NAD_Gly3P_dh_N: NAD-d 64.5 6.1 0.00013 28.6 2.4 70 9-86 11-90 (157)
78 cd05569 PTS_IIB_fructose PTS_I 64.3 25 0.00055 23.3 5.2 52 4-70 13-64 (96)
79 TIGR00853 pts-lac PTS system, 64.2 7.8 0.00017 25.8 2.6 25 5-30 16-40 (95)
80 PRK06545 prephenate dehydrogen 64.0 46 0.001 27.7 7.8 71 8-86 11-81 (359)
81 PRK10310 PTS system galactitol 63.7 12 0.00027 24.7 3.6 24 5-29 15-39 (94)
82 COG1587 HemD Uroporphyrinogen- 63.6 23 0.0005 27.7 5.7 77 7-104 11-87 (248)
83 PF02410 Oligomerisation: Olig 63.3 13 0.00028 24.9 3.6 45 8-76 1-45 (100)
84 TIGR01505 tartro_sem_red 2-hyd 63.0 73 0.0016 25.4 8.6 110 8-135 10-119 (291)
85 cd05212 NAD_bind_m-THF_DH_Cycl 60.4 23 0.00049 25.4 4.7 17 54-70 66-82 (140)
86 PF02302 PTS_IIB: PTS system, 60.2 17 0.00038 23.2 3.8 48 4-71 12-59 (90)
87 PRK09599 6-phosphogluconate de 60.2 66 0.0014 25.9 7.9 107 8-136 11-121 (301)
88 TIGR00872 gnd_rel 6-phosphoglu 59.7 91 0.002 25.1 10.5 110 7-136 10-120 (298)
89 PF03446 NAD_binding_2: NAD bi 59.5 21 0.00045 25.9 4.5 109 7-136 11-121 (163)
90 PRK10427 putative PTS system f 59.3 33 0.00071 23.7 5.1 68 4-104 17-85 (114)
91 PF06283 ThuA: Trehalose utili 59.2 50 0.0011 25.1 6.8 69 7-102 19-87 (217)
92 cd06578 HemD Uroporphyrinogen- 57.0 45 0.00097 25.2 6.2 57 9-86 10-69 (239)
93 PRK11559 garR tartronate semia 56.6 99 0.0021 24.7 8.4 107 8-135 13-122 (296)
94 PRK09065 glutamine amidotransf 55.9 46 0.001 26.0 6.1 56 10-85 25-84 (237)
95 PRK08250 glutamine amidotransf 54.2 51 0.0011 25.7 6.1 38 14-70 19-57 (235)
96 PRK05928 hemD uroporphyrinogen 53.1 29 0.00063 26.6 4.6 60 9-86 13-72 (249)
97 PRK07053 glutamine amidotransf 53.0 28 0.0006 27.2 4.4 40 12-70 19-59 (234)
98 CHL00144 odpB pyruvate dehydro 52.6 86 0.0019 25.8 7.4 69 2-84 209-278 (327)
99 COG0287 TyrA Prephenate dehydr 52.2 26 0.00057 28.2 4.3 72 7-86 13-85 (279)
100 PRK10834 vancomycin high tempe 51.7 34 0.00073 27.0 4.6 61 62-127 48-110 (239)
101 KOG2728 Uncharacterized conser 51.5 22 0.00048 28.2 3.5 34 68-107 8-41 (302)
102 TIGR01855 IMP_synth_hisH imida 51.3 37 0.0008 25.5 4.8 38 2-68 8-45 (196)
103 KOG1160 Fe-S oxidoreductase [E 50.3 1.2E+02 0.0025 26.5 7.8 83 2-108 57-144 (601)
104 TIGR00333 nrdI ribonucleoside- 50.2 41 0.00089 23.6 4.5 64 69-134 1-72 (125)
105 PLN02683 pyruvate dehydrogenas 50.1 1.1E+02 0.0024 25.5 7.8 67 2-84 236-305 (356)
106 PRK08818 prephenate dehydrogen 49.8 32 0.0007 28.9 4.6 56 8-85 16-71 (370)
107 cd01743 GATase1_Anthranilate_S 49.4 91 0.002 23.0 6.6 39 12-69 14-53 (184)
108 PRK06490 glutamine amidotransf 46.7 62 0.0013 25.3 5.5 15 55-69 48-63 (239)
109 TIGR01501 MthylAspMutase methy 46.0 1.1E+02 0.0023 21.8 8.9 94 10-129 19-112 (134)
110 PRK05678 succinyl-CoA syntheta 45.7 1.6E+02 0.0035 23.9 10.0 107 2-135 14-124 (291)
111 cd01080 NAD_bind_m-THF_DH_Cycl 45.3 43 0.00092 24.8 4.2 23 54-77 82-104 (168)
112 PF00117 GATase: Glutamine ami 45.3 72 0.0016 23.5 5.6 60 4-86 9-69 (192)
113 PRK10474 putative PTS system f 44.9 61 0.0013 21.1 4.4 35 53-104 32-66 (88)
114 TIGR00873 gnd 6-phosphoglucona 43.7 2.2E+02 0.0048 24.8 10.2 146 7-184 9-159 (467)
115 PF02780 Transketolase_C: Tran 43.5 25 0.00054 24.1 2.6 30 2-32 17-46 (124)
116 PF05368 NmrA: NmrA-like famil 43.4 64 0.0014 24.5 5.2 72 53-131 58-138 (233)
117 COG3260 Ni,Fe-hydrogenase III 42.9 1.1E+02 0.0025 21.9 5.7 46 55-109 45-90 (148)
118 PF00289 CPSase_L_chain: Carba 41.7 1.1E+02 0.0024 20.8 6.4 94 8-134 13-106 (110)
119 PRK13527 glutamine amidotransf 41.3 56 0.0012 24.6 4.4 37 8-67 15-51 (200)
120 PRK13170 hisH imidazole glycer 41.1 44 0.00095 25.2 3.8 34 3-65 11-44 (196)
121 PTZ00182 3-methyl-2-oxobutanat 41.0 1.7E+02 0.0036 24.5 7.5 69 2-84 241-310 (355)
122 cd03130 GATase1_CobB Type 1 gl 40.9 49 0.0011 25.0 4.0 12 56-67 37-48 (198)
123 PF00919 UPF0004: Uncharacteri 40.7 1.1E+02 0.0023 20.4 5.8 49 55-107 32-80 (98)
124 TIGR02717 AcCoA-syn-alpha acet 40.7 2.4E+02 0.0052 24.3 10.2 107 6-135 20-129 (447)
125 TIGR00090 iojap_ybeB iojap-lik 40.5 50 0.0011 22.0 3.6 49 9-85 2-50 (99)
126 TIGR01723 hmd_TIGR 5,10-methen 40.4 2.1E+02 0.0045 23.5 9.3 31 54-86 134-165 (340)
127 PF10087 DUF2325: Uncharacteri 40.4 1E+02 0.0023 20.1 5.9 42 54-105 43-84 (97)
128 PRK05479 ketol-acid reductoiso 39.5 1.8E+02 0.004 24.1 7.4 57 7-69 27-83 (330)
129 PRK11404 putative PTS system 39.0 70 0.0015 28.0 5.1 47 4-66 18-65 (482)
130 TIGR00888 guaA_Nterm GMP synth 38.9 1.6E+02 0.0034 21.8 6.6 23 3-30 9-31 (188)
131 PRK09189 uroporphyrinogen-III 38.7 1E+02 0.0023 23.7 5.7 21 59-86 170-190 (240)
132 KOG3179 Predicted glutamine sy 37.5 1.9E+02 0.0042 22.4 6.7 38 15-70 33-70 (245)
133 PF13344 Hydrolase_6: Haloacid 37.2 24 0.00052 23.5 1.6 56 59-131 4-59 (101)
134 PRK11892 pyruvate dehydrogenas 37.1 2.2E+02 0.0047 24.9 7.8 69 2-84 348-417 (464)
135 CHL00188 hisH imidazole glycer 37.1 1.1E+02 0.0023 23.5 5.4 16 55-70 35-50 (210)
136 PF02153 PDH: Prephenate dehyd 36.5 2.1E+02 0.0046 22.5 9.5 27 54-86 40-66 (258)
137 PF13380 CoA_binding_2: CoA bi 36.3 1.1E+02 0.0024 20.9 4.9 97 6-135 13-110 (116)
138 PRK15461 NADH-dependent gamma- 36.3 2.3E+02 0.0049 22.8 8.8 110 8-136 12-122 (296)
139 PF13460 NAD_binding_10: NADH( 35.8 65 0.0014 23.2 4.0 94 3-106 5-100 (183)
140 cd01750 GATase1_CobQ Type 1 gl 34.8 78 0.0017 23.7 4.3 33 12-69 15-47 (194)
141 PF02593 dTMP_synthase: Thymid 34.7 2.2E+02 0.0047 22.1 7.0 87 21-134 21-110 (217)
142 cd01968 Nitrogenase_NifE_I Nit 34.5 2.7E+02 0.0059 23.5 7.9 115 2-132 68-189 (410)
143 PRK14476 nitrogenase molybdenu 34.5 3.1E+02 0.0066 23.8 8.9 115 2-131 74-199 (455)
144 COG0386 BtuE Glutathione perox 33.9 1.2E+02 0.0026 22.3 4.8 43 93-135 22-65 (162)
145 PF11382 DUF3186: Protein of u 33.9 69 0.0015 26.2 4.1 51 79-133 66-116 (308)
146 PRK10712 PTS system fructose-s 33.3 94 0.002 27.8 5.1 51 4-69 118-168 (563)
147 PRK13141 hisH imidazole glycer 33.3 91 0.002 23.5 4.5 14 55-68 33-46 (205)
148 PRK09590 celB cellobiose phosp 32.7 80 0.0017 21.3 3.6 25 4-29 13-37 (104)
149 PRK11199 tyrA bifunctional cho 32.6 60 0.0013 27.2 3.6 44 8-70 110-153 (374)
150 cd03140 GATase1_PfpI_3 Type 1 32.6 69 0.0015 23.2 3.6 41 58-105 59-100 (170)
151 PRK13152 hisH imidazole glycer 32.4 90 0.002 23.5 4.3 11 55-65 33-43 (201)
152 COG1168 MalY Bifunctional PLP- 32.2 3.2E+02 0.0069 23.3 7.7 75 58-137 105-201 (388)
153 cd01740 GATase1_FGAR_AT Type 1 31.6 1.3E+02 0.0029 23.4 5.2 40 12-70 15-55 (238)
154 COG3414 SgaB Phosphotransferas 31.2 1E+02 0.0022 20.4 3.9 27 3-30 13-41 (93)
155 PRK07417 arogenate dehydrogena 31.0 2.1E+02 0.0046 22.7 6.4 67 8-85 11-77 (279)
156 TIGR01737 FGAM_synth_I phospho 30.9 1.3E+02 0.0029 23.2 5.1 12 57-68 38-49 (227)
157 PRK05670 anthranilate synthase 30.8 2E+02 0.0044 21.3 6.0 19 11-30 14-32 (189)
158 PRK15059 tartronate semialdehy 30.7 2.8E+02 0.0062 22.2 9.0 109 8-135 11-119 (292)
159 COG0799 Uncharacterized homolo 30.6 1.8E+02 0.004 20.1 5.1 54 4-85 2-55 (115)
160 cd01965 Nitrogenase_MoFe_beta_ 30.5 3.4E+02 0.0074 23.1 8.2 68 59-132 116-187 (428)
161 PRK14814 NADH dehydrogenase su 30.4 96 0.0021 23.5 4.0 46 55-109 69-114 (186)
162 cd06259 YdcF-like YdcF-like. Y 30.1 1.5E+02 0.0032 20.8 5.0 63 62-128 3-65 (150)
163 TIGR00465 ilvC ketol-acid redu 29.9 3.1E+02 0.0068 22.4 7.6 58 7-70 13-70 (314)
164 PRK07200 aspartate/ornithine c 29.4 3.6E+02 0.0078 23.0 8.6 38 94-131 185-222 (395)
165 PRK06975 bifunctional uroporph 29.3 1.3E+02 0.0028 27.5 5.4 59 9-86 15-75 (656)
166 COG0061 nadF NAD kinase [Coenz 29.2 31 0.00067 27.7 1.3 14 56-69 162-175 (281)
167 PRK03619 phosphoribosylformylg 29.2 1.6E+02 0.0035 22.6 5.3 13 55-67 37-49 (219)
168 PRK08367 porA pyruvate ferredo 29.0 3.3E+02 0.0072 23.1 7.5 62 2-79 269-332 (394)
169 PF13271 DUF4062: Domain of un 28.7 1.6E+02 0.0034 18.6 5.4 22 54-75 47-68 (83)
170 PRK02261 methylaspartate mutas 28.7 2.1E+02 0.0047 20.2 10.0 58 11-86 22-79 (137)
171 PF03807 F420_oxidored: NADP o 28.6 21 0.00045 23.1 0.2 60 7-70 9-72 (96)
172 PF02662 FlpD: Methyl-viologen 28.5 1.1E+02 0.0024 21.3 3.9 63 57-126 50-123 (124)
173 COG0118 HisH Glutamine amidotr 28.2 92 0.002 23.9 3.6 47 54-104 34-82 (204)
174 PRK09765 PTS system 2-O-a-mann 28.0 1.3E+02 0.0028 27.3 5.1 51 4-70 178-229 (631)
175 cd00316 Oxidoreductase_nitroge 27.9 3.5E+02 0.0075 22.4 7.5 117 2-132 62-184 (399)
176 COG0022 AcoB Pyruvate/2-oxoglu 27.7 79 0.0017 26.0 3.3 32 2-34 208-239 (324)
177 PRK13181 hisH imidazole glycer 27.7 95 0.0021 23.3 3.7 37 2-67 9-45 (199)
178 PF12076 Wax2_C: WAX2 C-termin 27.5 58 0.0013 24.0 2.3 26 2-28 4-29 (164)
179 cd05566 PTS_IIB_galactitol PTS 27.2 1.2E+02 0.0026 19.2 3.7 24 2-26 11-34 (89)
180 cd03146 GAT1_Peptidase_E Type 27.0 1.7E+02 0.0036 22.3 5.0 14 54-67 75-88 (212)
181 PRK14820 NADH dehydrogenase su 26.8 86 0.0019 23.6 3.2 47 55-110 69-115 (180)
182 PRK07119 2-ketoisovalerate fer 26.8 1.6E+02 0.0034 24.6 5.1 30 2-32 254-283 (352)
183 COG3340 PepE Peptidase E [Amin 26.7 1.3E+02 0.0028 23.5 4.1 43 8-67 50-92 (224)
184 PRK14077 pnk inorganic polypho 26.6 37 0.00079 27.5 1.3 12 58-69 175-186 (287)
185 cd01989 STK_N The N-terminal d 26.4 1.8E+02 0.0039 20.0 4.8 16 55-70 99-114 (146)
186 PRK08811 uroporphyrinogen-III 26.4 82 0.0018 25.0 3.3 50 8-69 29-79 (266)
187 COG0296 GlgB 1,4-alpha-glucan 26.4 1.4E+02 0.003 27.2 4.9 61 4-85 162-223 (628)
188 PRK14815 NADH dehydrogenase su 26.3 1.4E+02 0.0029 22.6 4.2 47 55-110 69-115 (183)
189 PLN02808 alpha-galactosidase 26.3 3.1E+02 0.0066 23.4 6.7 65 58-132 82-151 (386)
190 PRK12557 H(2)-dependent methyl 26.2 3.8E+02 0.0083 22.2 7.9 26 55-85 77-102 (342)
191 cd01866 Rab2 Rab2 subfamily. 26.0 2.4E+02 0.0053 19.9 5.8 74 54-131 71-144 (168)
192 TIGR02069 cyanophycinase cyano 25.8 1.9E+02 0.004 22.8 5.2 13 54-66 77-89 (250)
193 PRK09393 ftrA transcriptional 25.7 96 0.0021 25.1 3.7 44 55-105 71-115 (322)
194 COG5012 Predicted cobalamin bi 25.6 3.3E+02 0.0071 21.3 6.4 76 3-100 114-190 (227)
195 PLN02617 imidazole glycerol ph 25.6 1.4E+02 0.0031 26.5 4.9 36 3-67 17-52 (538)
196 PRK06444 prephenate dehydrogen 25.5 53 0.0011 25.0 2.0 19 6-25 10-28 (197)
197 PF01861 DUF43: Protein of unk 25.5 3.4E+02 0.0075 21.5 6.9 67 56-132 109-175 (243)
198 COG3340 PepE Peptidase E [Amin 25.2 3.3E+02 0.0072 21.2 6.9 38 96-134 32-69 (224)
199 PLN02225 1-deoxy-D-xylulose-5- 25.2 4.4E+02 0.0095 24.4 7.9 70 2-85 575-644 (701)
200 PRK13146 hisH imidazole glycer 25.1 1.6E+02 0.0034 22.4 4.5 14 54-67 36-49 (209)
201 PRK15438 erythronate-4-phospha 25.1 3.8E+02 0.0083 22.7 7.1 70 54-132 74-144 (378)
202 PF09314 DUF1972: Domain of un 25.0 1.5E+02 0.0032 22.4 4.2 34 97-130 2-37 (185)
203 PRK01185 ppnK inorganic polyph 24.9 36 0.00077 27.3 1.0 12 58-69 156-167 (271)
204 PRK03372 ppnK inorganic polyph 24.8 41 0.00089 27.5 1.3 12 58-69 183-194 (306)
205 PRK02649 ppnK inorganic polyph 24.8 40 0.00087 27.5 1.3 12 58-69 179-190 (305)
206 PRK08655 prephenate dehydrogen 24.8 94 0.002 26.7 3.5 69 7-86 11-79 (437)
207 PRK12491 pyrroline-5-carboxyla 24.7 2.6E+02 0.0057 22.2 5.9 25 55-85 59-83 (272)
208 PRK13142 hisH imidazole glycer 24.5 1.6E+02 0.0034 22.3 4.4 37 3-68 10-46 (192)
209 PRK05752 uroporphyrinogen-III 24.4 1E+02 0.0023 24.0 3.5 49 9-69 15-65 (255)
210 PRK01911 ppnK inorganic polyph 24.3 37 0.0008 27.6 0.9 12 58-69 174-185 (292)
211 cd01741 GATase1_1 Subgroup of 24.3 1.7E+02 0.0038 21.4 4.6 14 55-68 42-55 (188)
212 smart00175 RAB Rab subfamily o 24.1 1.5E+02 0.0032 20.6 4.1 48 54-105 67-114 (164)
213 COG1832 Predicted CoA-binding 24.1 1.7E+02 0.0037 21.0 4.1 35 95-133 15-49 (140)
214 cd03129 GAT1_Peptidase_E_like 24.0 2.1E+02 0.0045 21.6 5.0 14 54-67 75-88 (210)
215 PF00255 GSHPx: Glutathione pe 24.0 2.4E+02 0.0052 19.2 6.1 43 92-135 17-61 (108)
216 PRK00561 ppnK inorganic polyph 23.8 42 0.00091 26.8 1.2 12 58-69 135-146 (259)
217 PRK07168 bifunctional uroporph 23.7 2.1E+02 0.0045 25.0 5.5 59 8-86 262-320 (474)
218 PRK03501 ppnK inorganic polyph 23.6 45 0.00097 26.7 1.3 12 58-69 147-158 (264)
219 cd03138 GATase1_AraC_2 AraC tr 23.6 1E+02 0.0022 22.8 3.2 44 55-105 65-113 (195)
220 PRK04885 ppnK inorganic polyph 23.4 46 0.001 26.6 1.3 12 58-69 146-157 (265)
221 cd03141 GATase1_Hsp31_like Typ 23.4 1.1E+02 0.0024 23.5 3.4 43 56-105 87-132 (221)
222 cd01974 Nitrogenase_MoFe_beta 23.2 4.6E+02 0.01 22.4 7.5 69 59-131 120-191 (435)
223 PRK14075 pnk inorganic polypho 23.1 47 0.001 26.3 1.3 12 58-69 144-155 (256)
224 PF04016 DUF364: Domain of unk 23.0 2.3E+02 0.0049 20.3 4.8 72 13-105 24-97 (147)
225 PF11965 DUF3479: Domain of un 23.0 2E+02 0.0043 21.3 4.5 51 20-83 29-80 (164)
226 TIGR03376 glycerol3P_DH glycer 23.0 3.9E+02 0.0085 22.2 6.8 26 55-86 78-103 (342)
227 TIGR01861 ANFD nitrogenase iro 23.0 5.4E+02 0.012 22.8 8.3 117 2-132 109-233 (513)
228 TIGR01833 HMG-CoA-S_euk 3-hydr 22.9 91 0.002 27.1 3.1 34 69-107 329-362 (454)
229 PRK02231 ppnK inorganic polyph 22.9 47 0.001 26.7 1.3 12 58-69 154-165 (272)
230 PRK14478 nitrogenase molybdenu 22.9 5.1E+02 0.011 22.5 9.1 115 2-132 101-222 (475)
231 PRK04539 ppnK inorganic polyph 22.8 47 0.001 27.0 1.3 12 58-69 179-190 (296)
232 PRK14817 NADH dehydrogenase su 22.4 90 0.002 23.5 2.6 47 55-110 71-117 (181)
233 PF11019 DUF2608: Protein of u 22.4 3E+02 0.0065 21.7 5.8 66 54-136 146-211 (252)
234 PRK02645 ppnK inorganic polyph 22.3 50 0.0011 26.9 1.3 12 58-69 177-188 (305)
235 PRK00094 gpsA NAD(P)H-dependen 22.1 3.2E+02 0.0069 21.9 6.1 72 8-86 12-92 (325)
236 PRK03708 ppnK inorganic polyph 22.0 51 0.0011 26.5 1.3 12 58-69 163-174 (277)
237 PRK12439 NAD(P)H-dependent gly 21.8 3.2E+02 0.0069 22.5 6.0 26 55-86 73-98 (341)
238 cd04907 ACT_ThrD-I_2 Second of 21.8 2.2E+02 0.0049 18.0 4.7 54 75-132 12-70 (81)
239 PLN02692 alpha-galactosidase 21.8 4.6E+02 0.01 22.6 7.0 64 59-132 107-175 (412)
240 PF02602 HEM4: Uroporphyrinoge 21.7 77 0.0017 24.0 2.3 46 11-69 2-52 (231)
241 PRK01231 ppnK inorganic polyph 21.7 50 0.0011 26.8 1.2 12 58-69 173-184 (295)
242 COG0796 MurI Glutamate racemas 21.6 4.3E+02 0.0093 21.3 6.4 62 95-183 4-65 (269)
243 PLN02234 1-deoxy-D-xylulose-5- 21.6 6.3E+02 0.014 23.1 8.7 69 2-85 552-621 (641)
244 PRK14818 NADH dehydrogenase su 21.6 2.5E+02 0.0055 21.0 4.8 47 54-109 65-111 (173)
245 PRK05665 amidotransferase; Pro 21.3 4E+02 0.0087 20.8 6.6 25 55-79 53-78 (240)
246 PRK00758 GMP synthase subunit 21.3 2.9E+02 0.0063 20.2 5.3 40 3-68 10-51 (184)
247 PF04127 DFP: DNA / pantothena 21.3 23 0.0005 26.6 -0.7 72 3-75 26-98 (185)
248 PRK14179 bifunctional 5,10-met 21.1 4.5E+02 0.0098 21.3 10.4 27 5-32 46-72 (284)
249 PRK14477 bifunctional nitrogen 21.1 6.2E+02 0.013 24.3 8.4 115 2-132 94-215 (917)
250 cd01971 Nitrogenase_VnfN_like 21.1 5.2E+02 0.011 22.0 8.0 118 2-132 68-191 (427)
251 cd03466 Nitrogenase_NifN_2 Nit 21.0 5.3E+02 0.011 22.0 7.4 111 2-132 66-186 (429)
252 PRK04761 ppnK inorganic polyph 21.0 56 0.0012 25.8 1.3 11 59-69 133-143 (246)
253 PF06792 UPF0261: Uncharacteri 21.0 92 0.002 26.6 2.7 30 1-31 192-221 (403)
254 PRK14816 NADH dehydrogenase su 20.9 1.6E+02 0.0035 22.2 3.7 47 55-110 77-123 (182)
255 PF00763 THF_DHG_CYH: Tetrahyd 20.9 2.9E+02 0.0062 18.9 5.3 57 6-73 44-101 (117)
256 COG0078 ArgF Ornithine carbamo 20.8 4.8E+02 0.01 21.5 6.7 54 93-179 150-203 (310)
257 PRK02155 ppnK NAD(+)/NADH kina 20.8 53 0.0012 26.6 1.2 12 58-69 174-185 (291)
258 PRK04147 N-acetylneuraminate l 20.7 1.9E+02 0.0041 23.2 4.4 29 58-86 98-126 (293)
259 PRK08659 2-oxoglutarate ferred 20.5 2.3E+02 0.005 23.8 5.0 31 2-33 281-311 (376)
260 cd02072 Glm_B12_BD B12 binding 20.4 3.2E+02 0.0069 19.2 9.5 59 10-86 17-75 (128)
261 PRK06048 acetolactate synthase 20.3 3.7E+02 0.008 23.8 6.5 26 1-27 1-28 (561)
262 COG2242 CobL Precorrin-6B meth 20.3 3.9E+02 0.0085 20.2 8.2 63 55-135 98-161 (187)
No 1
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=1.4e-35 Score=226.01 Aligned_cols=187 Identities=52% Similarity=0.881 Sum_probs=158.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
+||||++||+++++++++..|++++++++.+..+.+++.+..+...++.|....+++.+||+||||||+|+++++++||.
T Consensus 10 ~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~g~~~~~lk~ 89 (197)
T TIGR01755 10 MYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRFGNMASQMRN 89 (197)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccccCccHHHHH
Confidence 68999999999999998623899999999887666666544333334445444688999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
|+|++..+|....+.||++++|+++||.+|+.+.++..+...|..+||.+|+.++.+. ..+..+..++|++||+.+..+
T Consensus 90 fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~~~-~~~~~~~~~gg~~~G~~~~~~ 168 (197)
T TIGR01755 90 FLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYAAQ-EQMGVDEVRGGSPYGATTIAG 168 (197)
T ss_pred HHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCcccc-cccccccccCCCCcceeeEcC
Confidence 9999988886668999999999999998888888999999999999999999877653 223344568899999999987
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 029532 161 -DGSRQPTELELEQAFHQGKHIAGIAKKL 188 (192)
Q Consensus 161 -~~~~~p~~~~~~~~~~lg~~la~~~~~~ 188 (192)
+++..|++.+++.++.+|+|+|+.+++|
T Consensus 169 ~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 169 GDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 7778899999999999999999999875
No 2
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-35 Score=223.22 Aligned_cols=188 Identities=53% Similarity=0.879 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
++|||++||+++++++++..|++++++++.+..+++++..+.++...+.+....+++.+||+||||||+|+|+++++||.
T Consensus 11 ~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~g~~~~~lk~ 90 (200)
T PRK03767 11 MYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRN 90 (200)
T ss_pred CCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccCCCchHHHHH
Confidence 58999999999999998623899999999876666665444443322223233789999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
|+|++..+|....+.+|++++|+++||.+|+.+.++..+...|..+||.+|+.++.+. .+...+..++|++||+.+..+
T Consensus 91 fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~~-~~~~~~~~~~g~~~G~~~~~~ 169 (200)
T PRK03767 91 FLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAFQ-GQMDVDEVTGGSPYGATTIAG 169 (200)
T ss_pred HHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCccc-cccccccccCCcccceeeecC
Confidence 9999988886667999999999999998888888999999999999999999877652 222233457899999999886
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029532 161 -DGSRQPTELELEQAFHQGKHIAGIAKKLK 189 (192)
Q Consensus 161 -~~~~~p~~~~~~~~~~lg~~la~~~~~~~ 189 (192)
+++..|++++++.++.+|+|+++.+++++
T Consensus 170 ~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~ 199 (200)
T PRK03767 170 GDGSRQPSENELAGARYQGRHVAEIAAKLA 199 (200)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788999999999999999999999986
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=1e-33 Score=202.36 Aligned_cols=189 Identities=75% Similarity=1.172 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCC-CCCCCChhHhhhCCEEEEeccccCCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKS-DVPIITPNELAEADGFVFGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k 79 (192)
+||+.+.||+++.++++.+.| +.+++.+++.++.+++.+....+++ |+|....+.|.+||+++||.|+.+|++|+|+|
T Consensus 11 ~yghv~~lAe~~kkGie~a~g-eA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRfG~~~AQ~k 89 (203)
T KOG3135|consen 11 TYGHVAKLAEAEKKGIESAGG-EATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRFGNMPAQWK 89 (203)
T ss_pred cccHHHHHHHHHHhhhhccCC-eeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccccCcHHHHH
Confidence 589999999999999998645 9999999999999999998888774 78988899999999999999999999999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc-CCCCccccccccCCCCCcccee
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT-FGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
.|+|+...+|....|.||++++|.|.|..+|+++.+..+-...|.+|||..|+.+|. .....+.|+++++|++||++++
T Consensus 90 aF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~Ggsp~GAGt~ 169 (203)
T KOG3135|consen 90 AFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVHGGSPWGAGTF 169 (203)
T ss_pred HHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhcccCCCCCCCcee
Confidence 999999999998999999999999999888899988777778889999999999998 6668889999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 029532 159 AG-DGSRQPTELELEQAFHQGKHIAGIAKKLKG 190 (192)
Q Consensus 159 ~~-~~~~~p~~~~~~~~~~lg~~la~~~~~~~~ 190 (192)
++ ||...|.+.+++.++.-|+-+++.+++|+.
T Consensus 170 Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 170 AGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred ecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 99 999899999999999999999999999875
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.96 E-value=6.1e-28 Score=185.40 Aligned_cols=187 Identities=40% Similarity=0.564 Sum_probs=147.5
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCC--CCHHHhcccCC---CC-CCCCCCCChhHhhhCCEEEEeccccCCCch
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPET--LPEEVLGKMSA---PP-KSDVPIITPNELAEADGFVFGFPTRFGMMA 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~--~~~~~~~~~~~---~~-~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~ 75 (192)
+|||.+|++++++++++ .|+|++++++.+. .+|..|..|.. |. +||..+...++|.+||+||||||+|+|++|
T Consensus 13 ~G~t~~l~~~~~~g~~~-~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEE-AGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHH-cCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCch
Confidence 79999999999999999 5999999999987 57777765543 43 444333457899999999999999999999
Q ss_pred HHHHHHHHh-hccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCc
Q 029532 76 AQFKAFLDA-TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYG 154 (192)
Q Consensus 76 ~~~k~fld~-~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g 154 (192)
++||.|||| ...+|....+++|+.+.|++.+..+++++.++..+...+..++|.+++.++.....-...+....|.++|
T Consensus 92 a~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~g~~~~ 171 (207)
T COG0655 92 AQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGNAVVGSGVDLIKGGDPYG 171 (207)
T ss_pred HHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccccccCcccccccCCCCcc
Confidence 999999999 7777766689999999999998888777778899999999999999987765322100122356788888
Q ss_pred cceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029532 155 AGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKLK 189 (192)
Q Consensus 155 ~~~~~~~~~~~p~~~~~~~~~~lg~~la~~~~~~~ 189 (192)
....+...-..+.+.+++.++.++++.++...++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 172 AVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred cceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 87766522223666778888888888888776653
No 5
>PRK05569 flavodoxin; Provisional
Probab=99.91 E-value=2.2e-23 Score=150.90 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCc--hHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMM--AAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~--~~~~ 78 (192)
++|||++||++|++++++ .|++++++++.+. ...++.+||+||||||+|++++ |++|
T Consensus 11 ~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~~~~~d~iilgsPty~~~~~~~~~~ 69 (141)
T PRK05569 11 CGGNVEVLANTIADGAKE-AGAEVTIKHVADA--------------------KVEDVLEADAVAFGSPSMDNNNIEQEEM 69 (141)
T ss_pred CCCHHHHHHHHHHHHHHh-CCCeEEEEECCcC--------------------CHHHHhhCCEEEEECCCcCCCcCChHHH
Confidence 589999999999999988 5889999998763 2368999999999999999886 3789
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|+|++.. ..++||++++|+|+||..+. .+..+...+...|+.+++. +.+
T Consensus 70 ~~~~~~l~~----~~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~~--------------------- 120 (141)
T PRK05569 70 APFLDQFKL----TPNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LAV--------------------- 120 (141)
T ss_pred HHHHHHhhc----cCcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EEE---------------------
Confidence 999999862 24689999999999997433 3456777788899999874 321
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIA 182 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la 182 (192)
+..|+++++++|+++|++|+
T Consensus 121 ----~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 121 ----NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ----ccCCCHHHHHHHHHHHHHHh
Confidence 25799999999999999986
No 6
>PRK05568 flavodoxin; Provisional
Probab=99.91 E-value=2.7e-23 Score=150.55 Aligned_cols=129 Identities=23% Similarity=0.316 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCch--HHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMA--AQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~--~~~ 78 (192)
++|||+++|++|++++++ .|++++++++.+. ...++.++|+||||||+|+++++ +++
T Consensus 11 ~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~~~~~d~iilgsp~y~~~~~~~~~~ 69 (142)
T PRK05568 11 GTGNTEAMANLIAEGAKE-NGAEVKLLNVSEA--------------------SVDDVKGADVVALGSPAMGDEVLEEGEM 69 (142)
T ss_pred CCchHHHHHHHHHHHHHH-CCCeEEEEECCCC--------------------CHHHHHhCCEEEEECCccCcccccchhH
Confidence 689999999999999988 6999999998764 23689999999999999999974 689
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++++. ..+++|++++|+++||..+. ....+...+...|+.+++.++..
T Consensus 70 ~~f~~~~~-----~~~~~k~~~~f~t~G~~~~~---~~~~~~~~l~~~g~~~~~~~~~~--------------------- 120 (142)
T PRK05568 70 EPFVESIS-----SLVKGKKLVLFGSYGWGDGE---WMRDWVERMEGYGANLVNEGLIV--------------------- 120 (142)
T ss_pred HHHHHHhh-----hhhCCCEEEEEEccCCCCCh---HHHHHHHHHHHCCCEEeCCcEEE---------------------
Confidence 99999984 34689999999999986432 34567777889999999875532
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIAG 183 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la~ 183 (192)
+..|+++++++|+++|++|++
T Consensus 121 ----~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 121 ----NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred ----ecCCCHHHHHHHHHHHHHHHh
Confidence 246999999999999999874
No 7
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.91 E-value=1.6e-23 Score=175.10 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHhcc--ccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHH
Q 029532 1 MYGHVEKLAEEIKKGAS--SVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~--~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
|||||++||++|+++++ + .|++|+++++.+.++.++ ..++.+||+||||||||++++.++|
T Consensus 257 ~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~~~i----------------~~~~~~~d~ii~GspT~~~~~~~~~ 319 (394)
T PRK11921 257 MWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDKNDI----------------ITEVFKSKAILVGSSTINRGILSST 319 (394)
T ss_pred CchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCHHHH----------------HHHHHhCCEEEEECCCcCccccHHH
Confidence 79999999999999998 5 689999999987644333 2677899999999999999988999
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++.+.. ..++||++++|+|+||.++ ++..+...|...|+.+++.++.+
T Consensus 320 ~~~l~~l~~----~~~~~K~~a~FGsygw~g~----a~~~~~~~l~~~g~~~v~~~~~~--------------------- 370 (394)
T PRK11921 320 AAILEEIKG----LGFKNKKAAAFGSYGWSGE----SVKIITERLKKAGFEIVNDGIRE--------------------- 370 (394)
T ss_pred HHHHHHhhc----cCcCCCEEEEEecCCCccH----HHHHHHHHHHHCCCEEccCcEEE---------------------
Confidence 999999863 3689999999999999643 34578888999999999876643
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIAGIA 185 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la~~~ 185 (192)
+..|+++++++|+++|++|++.+
T Consensus 371 ----~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 371 ----LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred ----EeCCCHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999998754
No 8
>PRK06756 flavodoxin; Provisional
Probab=99.90 E-value=8.5e-23 Score=149.01 Aligned_cols=136 Identities=23% Similarity=0.290 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-CCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-g~~~~~~k 79 (192)
++|||+++|+.|++++++ .|++++++++.+.. ...++.++|.||||||+|+ +.+|..++
T Consensus 11 ~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~~-------------------~~~~~~~~d~vi~gspt~~~g~~p~~~~ 70 (148)
T PRK06756 11 MSGNTEEMADHIAGVIRE-TENEIEVIDIMDSP-------------------EASILEQYDGIILGAYTWGDGDLPDDFL 70 (148)
T ss_pred CCchHHHHHHHHHHHHhh-cCCeEEEeehhccC-------------------CHHHHhcCCeEEEEeCCCCCCCCcHHHH
Confidence 689999999999999988 69999999886531 1368899999999999996 77888899
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceec
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+. ...++||++++|+++++.+++...++..+...|...|+.++..+..+
T Consensus 71 ~fl~~l~----~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~---------------------- 124 (148)
T PRK06756 71 DFYDAMD----SIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKV---------------------- 124 (148)
T ss_pred HHHHHHh----cCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEE----------------------
Confidence 9999985 23689999999999776544455678899999999999999876542
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029532 160 GDGSRQPTELELEQAFHQGKHIAGIA 185 (192)
Q Consensus 160 ~~~~~~p~~~~~~~~~~lg~~la~~~ 185 (192)
+..|+++++++|+++|++|++.+
T Consensus 125 ---~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 125 ---ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ---ecCCCHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999998753
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.90 E-value=4.1e-23 Score=176.01 Aligned_cols=136 Identities=23% Similarity=0.318 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHhcccc-CCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k 79 (192)
|||||++||++|++++++. .|++|+++++.+.++.++ ..++.+||+||||||||++++.++|+
T Consensus 261 ~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i----------------~~~~~~ad~vilGspT~~~~~~p~~~ 324 (479)
T PRK05452 261 MSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEI----------------LTNVFRSKGVLVGSSTMNNVMMPKIA 324 (479)
T ss_pred CccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHH----------------HhHHhhCCEEEEECCccCCcchHHHH
Confidence 7999999999999999862 267999999987644333 26677899999999999999999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceec
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+.. ..++||++++|+|+||.+++ ++.+...|...|++++. ++.+
T Consensus 325 ~fl~~l~~----~~l~gK~~~vFGSygw~g~a----~~~~~~~l~~~g~~~~~-~l~~---------------------- 373 (479)
T PRK05452 325 GLLEEITG----LRFRNKRASAFGSHGWSGGA----VDRLSTRLQDAGFEMSL-SLKA---------------------- 373 (479)
T ss_pred HHHHHhhc----cCcCCCEEEEEECCCcCcHH----HHHHHHHHHHCCCEEec-cEEE----------------------
Confidence 99999863 35899999999999996543 45788889999999974 4432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029532 160 GDGSRQPTELELEQAFHQGKHIAGIAK 186 (192)
Q Consensus 160 ~~~~~~p~~~~~~~~~~lg~~la~~~~ 186 (192)
+..|+++++++|+++|++|++.++
T Consensus 374 ---~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 374 ---KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred ---EecCCHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999998776
No 10
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.89 E-value=4.2e-22 Score=143.62 Aligned_cols=131 Identities=22% Similarity=0.318 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCC-ch-HHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM-MA-AQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~-~~-~~~ 78 (192)
++|||+++|+.+++++.+ .|++++++++.+. ...++.++|.||||||+|+++ +| +.+
T Consensus 8 ~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~--------------------~~~~l~~~d~iilgspty~~g~~p~~~~ 66 (140)
T TIGR01753 8 MTGNTEEMANIIAEGLKE-AGAEVDLLEVADA--------------------DAEDLLSYDAVLLGCSTWGDEDLEQDDF 66 (140)
T ss_pred CCcHHHHHHHHHHHHHHh-cCCeEEEEEcccC--------------------CHHHHhcCCEEEEEcCCCCCCCCCcchH
Confidence 689999999999999988 6999999998763 246888999999999999855 66 899
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
+.|++++.. ..++||++++|+++||..+ ...+...+...|...|+.++.+++..
T Consensus 67 ~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~--------------------- 120 (140)
T TIGR01753 67 EPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKV--------------------- 120 (140)
T ss_pred HHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeee---------------------
Confidence 999999862 3579999999999988653 34566788888999999998865432
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIA 182 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la 182 (192)
+..|+++++++|++++++|+
T Consensus 121 ----~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 121 ----DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred ----ecCCCHHHHHHHHHHHHHhC
Confidence 25799999999999999874
No 11
>PRK06703 flavodoxin; Provisional
Probab=99.87 E-value=3.1e-21 Score=141.24 Aligned_cols=138 Identities=21% Similarity=0.214 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++|||+++|+.|++.+.+ .|++++++++.+. ...++.++|.|||+||+| .|.+|..++
T Consensus 11 ~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~--------------------~~~~l~~~d~viigspt~~~g~~p~~~~ 69 (151)
T PRK06703 11 MSGNTEDIADLIKVSLDA-FDHEVVLQEMDGM--------------------DAEELLAYDGIILGSYTWGDGDLPYEAE 69 (151)
T ss_pred CCchHHHHHHHHHHHHHh-cCCceEEEehhhC--------------------CHHHHhcCCcEEEEECCCCCCcCcHHHH
Confidence 689999999999999988 6999999988763 135789999999999999 477888999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceec
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++++.. ..+++|++++|++++|..+....+...+...|...|+.+++.++.+
T Consensus 70 ~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~---------------------- 123 (151)
T PRK06703 70 DFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI---------------------- 123 (151)
T ss_pred HHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE----------------------
Confidence 99999852 3578999999999988644334556778889999999998876542
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Q 029532 160 GDGSRQPT-ELELEQAFHQGKHIAGIAKKL 188 (192)
Q Consensus 160 ~~~~~~p~-~~~~~~~~~lg~~la~~~~~~ 188 (192)
+..|+ ++++++|++++++|++.++++
T Consensus 124 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 124 ---ELAPETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred ---ecCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 24575 789999999999999887654
No 12
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.87 E-value=9.8e-22 Score=160.39 Aligned_cols=133 Identities=29% Similarity=0.418 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
|||||++||++|++++.+ .|++|+++++...+++++. ++|.+|++||+||||+++++++++..
T Consensus 256 myg~T~~ma~aiaegl~~-~gv~v~~~~~~~~~~~eI~----------------~~i~~a~~~vvGsPT~~~~~~p~i~~ 318 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMK-EGVDVEVINLEDADPSEIV----------------EEILDAKGLVVGSPTINGGAHPPIQT 318 (388)
T ss_pred ccCCHHHHHHHHHHHhhh-cCCceEEEEcccCCHHHHH----------------HHHhhcceEEEecCcccCCCCchHHH
Confidence 799999999999999999 6999999999987666554 89999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
++-.+.. ...++|++++|+|+||++++.. .+...|+..|+.+....+.+
T Consensus 319 ~l~~v~~----~~~~~k~~~vfgS~GW~g~av~----~i~~~l~~~g~~~~~~~i~v----------------------- 367 (388)
T COG0426 319 ALGYVLA----LAPKNKLAGVFGSYGWSGEAVD----LIEEKLKDLGFEFGFDGIEV----------------------- 367 (388)
T ss_pred HHHHHHh----ccCcCceEEEEeccCCCCcchH----HHHHHHHhcCcEEeccceEE-----------------------
Confidence 9999863 4678999999999999876544 68888999999987655432
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 029532 161 DGSRQPTELELEQAFHQGKHIAG 183 (192)
Q Consensus 161 ~~~~~p~~~~~~~~~~lg~~la~ 183 (192)
+..|+++++++|+++|++||+
T Consensus 368 --k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 368 --KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred --EecCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999974
No 13
>PRK06242 flavodoxin; Provisional
Probab=99.87 E-value=2.1e-21 Score=141.77 Aligned_cols=137 Identities=23% Similarity=0.265 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~f 81 (192)
+|||+++|+.|++.+. ++++++.+. ...++.++|.||||+|+|+++++++|+.|
T Consensus 12 tGnT~~~A~~ia~~l~------~~~~~i~~~--------------------~~~~~~~~d~ii~g~pvy~~~~~~~~~~f 65 (150)
T PRK06242 12 HGNTEKIAKAIAEVLD------AEVIDPGDV--------------------NPEDLSEYDLIGFGSGIYFGKFHKSLLKL 65 (150)
T ss_pred CCCHHHHHHHHHHhcC------cEEecHHHC--------------------CcccHhHCCEEEEeCchhcCCcCHHHHHH
Confidence 6999999999999882 345555432 13678999999999999999999999999
Q ss_pred HHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC-
Q 029532 82 LDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG- 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 160 (192)
+|++. .+.||++++|+|+||..++. +..+...+...|+.+++.... .+...++.....+
T Consensus 66 l~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~-----------~g~~~~~~~~~~~~ 125 (150)
T PRK06242 66 IEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSC-----------KGFDTFGPFKLIGG 125 (150)
T ss_pred HHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEec-----------CCcccccchhhcCC
Confidence 99984 35899999999999975443 557888888999999875221 1111222211111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 029532 161 DGSRQPTELELEQAFHQGKHIAGI 184 (192)
Q Consensus 161 ~~~~~p~~~~~~~~~~lg~~la~~ 184 (192)
.....|+++++++|+++|++|++.
T Consensus 126 ~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 126 INKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhc
Confidence 124679999999999999999754
No 14
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.86 E-value=6.8e-22 Score=144.69 Aligned_cols=128 Identities=29% Similarity=0.421 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcc---cCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGK---MSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
+|||+++++++++.+++ .|++++++++.+. +.+.|.+ |.+...|++.+ ..++|.+||+|||+||+|++++|++|
T Consensus 13 ~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~-~~~~l~~aD~iI~~sP~y~~~~s~~l 89 (152)
T PF03358_consen 13 NSNTRKLAEAVAEQLEE-AGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQE-LYDKLKEADGIIFASPVYNGSVSGQL 89 (152)
T ss_dssp TSHHHHHHHHHHHHHHH-TTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHH-HHHHHHHSSEEEEEEEEBTTBE-HHH
T ss_pred CCHHHHHHHHHHHHHHH-cCCEEEEEecccc-chhhcccccccccCCcHHHHH-HHhceecCCeEEEeecEEcCcCChhh
Confidence 69999999999999998 5999999999997 3233332 22223333332 47999999999999999999999999
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
|+||||+.. +....+++|++++++++|+..++ ..+...++..+..+||.+++..
T Consensus 90 K~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~~ 143 (152)
T PF03358_consen 90 KNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPSG 143 (152)
T ss_dssp HHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECCS
T ss_pred hHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCCc
Confidence 999999963 33457899999999888765444 4577889999999999999873
No 15
>PRK07308 flavodoxin; Validated
Probab=99.86 E-value=2.1e-20 Score=136.13 Aligned_cols=134 Identities=14% Similarity=0.107 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-CCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-g~~~~~~k 79 (192)
++|||+++|+.|++++++ .|++++++++.+. ...++.++|.|||++|+|. |.+|..++
T Consensus 11 ~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~--------------------~~~~l~~~d~vi~g~~t~g~G~~p~~~~ 69 (146)
T PRK07308 11 MTGNTEEIADIVADKLRE-LGHDVDVDECTTV--------------------DASDFEDADIAIVATYTYGDGELPDEIV 69 (146)
T ss_pred CCchHHHHHHHHHHHHHh-CCCceEEEecccC--------------------CHhHhccCCEEEEEeCccCCCCCCHHHH
Confidence 689999999999999988 5889999888763 1367889999999999997 78998999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceec
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
.|++.+.. ..++||++++|+++...++........+...|...|+.++.+++.+
T Consensus 70 ~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~---------------------- 123 (146)
T PRK07308 70 DFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKV---------------------- 123 (146)
T ss_pred HHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEE----------------------
Confidence 99999863 3578999999999544333334556778888899999998765542
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Q 029532 160 GDGSRQPTELELEQAFHQGKHIAGI 184 (192)
Q Consensus 160 ~~~~~~p~~~~~~~~~~lg~~la~~ 184 (192)
+..|+++++++|+++|++|++.
T Consensus 124 ---~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 124 ---DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred ---eCCCCHHHHHHHHHHHHHHHhh
Confidence 3569999999999999999753
No 16
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.84 E-value=4.5e-20 Score=138.12 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCC--CCCCCCCCChhHhhhCCEEEEeccccCCCchHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP--PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
++++|.+|++.+.+.+.+..|+++++++|.+..++ +..+.+. ..++. ....++|.+||+|||+||+||+++|++|
T Consensus 11 ~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~AD~iIi~tP~Y~~s~~~~L 87 (174)
T TIGR03566 11 RPSRTLALVEALVAELAARLGISPRTIDLADLAPS--LGGALWRSQLPPDA-ERILQAIESADLLVVGSPVYRGSYTGLF 87 (174)
T ss_pred CCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChh--hccccccCCCCHHH-HHHHHHHHHCCEEEEECCcCcCcCcHHH
Confidence 36899999999999986324889999999875443 1111110 11111 1247899999999999999999999999
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
|+|||++. ...|.||++++++++|+..++ ......++..+...|+.+++..... ... .+
T Consensus 88 Kn~lD~~~----~~~l~~K~~~~v~~~g~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~-----------~~~-----~~ 146 (174)
T TIGR03566 88 KHLFDLVD----PNALIGKPVLLAATGGSERHA-LMVEHQLRPLFGFFQALTLPTGVYA-----------SDA-----DF 146 (174)
T ss_pred HHHHHhcC----HhHhCCCEEEEEEecCCccch-HHHHHHHHHHHHHhCcccccceEEE-----------Ehh-----hh
Confidence 99999985 246899999998887654433 2333457767777887776542211 000 11
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIAGIA 185 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la~~~ 185 (192)
++|. ..|++..++++.+.+.+++.+
T Consensus 147 -~~g~-l~d~~~~~~l~~~~~~~~~~~ 171 (174)
T TIGR03566 147 -ADYR-LASEALRARIALAVDRAAPLL 171 (174)
T ss_pred -cccc-ccCHHHHHHHHHHHHHHHHHh
Confidence 1222 357778889998888888765
No 17
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.83 E-value=1.3e-19 Score=137.32 Aligned_cols=160 Identities=17% Similarity=0.099 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~f 81 (192)
.++|.++++.+.+.+.+ .|++++++++.+..+.++..++. ..++.. ...++|.+||+|||+||+||+++|+.||+|
T Consensus 13 ~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~~~~--~~~~~~-~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~ 88 (191)
T PRK10569 13 PSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLYARF--DSPALK-TFTEQLAQADGLIVATPVYKASFSGALKTL 88 (191)
T ss_pred CChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHhccC--CCHHHH-HHHHHHHHCCEEEEECCccCCCCCHHHHHH
Confidence 58999999999999998 59999999999865433332111 111111 247899999999999999999999999999
Q ss_pred HHhhccccccCCCCCCcEEEEEecCCCCCChHHHH-HHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC
Q 029532 82 LDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
||++. ...|.||++++++++|.. ++. ..+ ..++..+...|..+++.+..... .... .+
T Consensus 89 iD~l~----~~~l~~K~v~iiat~G~~-~~~-~~~~~~lr~~l~~l~a~~~~~~~~~~~-----------~~~~--~~-- 147 (191)
T PRK10569 89 LDLLP----ERALEHKVVLPLATGGSV-AHM-LAVDYALKPVLSALKAQEILHGVFADD-----------SQVI--DY-- 147 (191)
T ss_pred HHhCC----hhhhCCCEEEEEEecCCc-hhH-HHHHHHHHHHHHHcCCeecCceEEEec-----------hhhh--cc--
Confidence 99985 346899999999887554 332 344 56777888899988766442100 0000 01
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029532 161 DGSRQPTELELEQAFHQGKHIAGIAK 186 (192)
Q Consensus 161 ~~~~~p~~~~~~~~~~lg~~la~~~~ 186 (192)
|.....|++..++++++.+.+++.+.
T Consensus 148 d~~~~~d~~~~~rl~~~~~~~~~~~~ 173 (191)
T PRK10569 148 HHQPQFTPNLQTRLDEALETFWQALH 173 (191)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHc
Confidence 11234589999999999999987664
No 18
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.80 E-value=9e-19 Score=130.71 Aligned_cols=158 Identities=19% Similarity=0.120 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~f 81 (192)
+++|.++++.+.+.+++ .|.+++++++.+... ..|..+.. ..++.. ...++|.+||+|||+||+||+++|+.||+|
T Consensus 12 ~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~-~~~~~~~~-~~~~~~-~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~ 87 (171)
T TIGR03567 12 PSRSSALLRHVREALQE-QGVEVDHLSVRDLPA-EDLLFARF-DSPAIK-AATAQVAQADGVVVATPVYKASYSGVLKAL 87 (171)
T ss_pred CChHHHHHHHHHHHHHH-CCCeEEEEEecCCCh-HHhhhcCC-CCHHHH-HHHHHHHHCCEEEEECCcccCCCCHHHHHH
Confidence 58999999999999988 588999999987532 22221111 111221 247899999999999999999999999999
Q ss_pred HHhhccccccCCCCCCcEEEEEecCCCCCChHHHH-HHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecC
Q 029532 82 LDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTA-LTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAG 160 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (192)
||++. ...+.+|++++++++|.. +.. ..+ ..++..|...|+.++...+..+.. ...++.
T Consensus 88 iD~~~----~~~l~~K~v~~~~~gg~~-~~~-~~~~~~l~~~l~~l~~~~~~~~v~~~~~--------------~~~~d~ 147 (171)
T TIGR03567 88 LDLLP----QRALRGKVVLPIATGGSI-AHL-LAIDYALKPVLSALGARHILPGVFALDS--------------QIERDE 147 (171)
T ss_pred HHhCC----hhhhCCCEEEEEEcCCch-hHH-HHHHHHHHHHHHHcCCccccceEEEEhh--------------Hhcccc
Confidence 99985 346899999988776543 232 233 357778888898654433221100 001222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 029532 161 DGSRQPTELELEQAFHQGKHIAG 183 (192)
Q Consensus 161 ~~~~~p~~~~~~~~~~lg~~la~ 183 (192)
+|....|++..+++++++++++.
T Consensus 148 ~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 148 DGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred CCccccCHHHHHHHHHHHHHHHh
Confidence 23222577778888888887764
No 19
>PRK09267 flavodoxin FldA; Validated
Probab=99.74 E-value=1.9e-16 Score=117.86 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-CCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-g~~~~~~k 79 (192)
++|||+++|+.|++.+.. .+++++++.+. ...++.++|.||||+|+|+ |.+|+.++
T Consensus 11 ~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~--------------------~~~~l~~~d~vi~g~pt~~~G~~~~~~~ 67 (169)
T PRK09267 11 DTGNTEDIAKMIQKKLGK---DVADVVDIAKA--------------------SKEDFEAYDLLILGIPTWGYGELQCDWD 67 (169)
T ss_pred CCChHHHHHHHHHHHhCC---CceEEEEhhhC--------------------CHhhHhhCCEEEEEecCcCCCCCCHHHH
Confidence 689999999999999964 26788887652 1367899999999999995 88899999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCC--ChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccce
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGG--GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGT 157 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g--~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (192)
.|++.+. ...++||++++|++++...- .....+..+...|...|+.+++.....++.++....++.+.++|...
T Consensus 68 ~fl~~~~----~~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~ 143 (169)
T PRK09267 68 DFLPELE----EIDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLAL 143 (169)
T ss_pred HHHHHHh----cCCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEe
Confidence 9999874 24688999999988654311 11345677888889999999987333344444433445566666642
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHH
Q 029532 158 FAGDGSRQPTELELEQAFHQGKHIAG 183 (192)
Q Consensus 158 ~~~~~~~~p~~~~~~~~~~lg~~la~ 183 (192)
|.+..++..+ +++++....|..
T Consensus 144 ---d~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 144 ---DEDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred ---cCCCchhhhH-HHHHHHHHHHHH
Confidence 3343454545 666666555543
No 20
>PRK00170 azoreductase; Reviewed
Probab=99.74 E-value=2.6e-17 Score=125.74 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhccccC--CceeEEEEcCCCC-CH---HHhcccCCCC---C-------CCCCCCChhHhhhCCEEEEe
Q 029532 3 GHVEKLAEEIKKGASSVE--GVEAKLWQVPETL-PE---EVLGKMSAPP---K-------SDVPIITPNELAEADGFVFG 66 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~--g~ev~~~~l~~~~-~~---~~~~~~~~~~---~-------~~~~~~~~~~l~~aD~ii~g 66 (192)
|+|.+|++.+.+++++ . |.+|+++||.+.. |+ ..+.++..+. . ++.. ...++|.+||+|||+
T Consensus 16 s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~l~~~i~~AD~iV~~ 93 (201)
T PRK00170 16 SQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSD-ELLEEFLAADKIVIA 93 (201)
T ss_pred cHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHH-HHHHHHHHCCEEEEe
Confidence 8999999999999987 5 7899999998764 21 1221111110 0 1111 136889999999999
Q ss_pred ccccCCCchHHHHHHHHhhcccc-----c----cCCCCCCcEEEEEecCCCCCC--hHHHHHHHHHHHHHcCCEEecC
Q 029532 67 FPTRFGMMAAQFKAFLDATGGLW-----R----TQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 67 sP~y~g~~~~~~k~fld~~~~~~-----~----~~~l~gK~~~~~~s~g~~~g~--~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
||+||+++|++||+||||+.... . ...++||++.+++++|+..+. .......++..+...|+..+..
T Consensus 94 sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 171 (201)
T PRK00170 94 APMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFLGFIGITDVEF 171 (201)
T ss_pred ecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHHHhcCCCceEE
Confidence 99999999999999999985321 0 135799999999988764321 1334556666777788876653
No 21
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.73 E-value=2.6e-16 Score=120.97 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCC--ChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII--TPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
.++.++++++.+.+.+ .|++++++++.+....+ . ..++.|.. ..+.+.+||+|||+||+||+++|+.+|+
T Consensus 40 S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~-~------d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKN 111 (219)
T TIGR02690 40 SYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPD-A------AHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKD 111 (219)
T ss_pred chHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCC-c------CcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHH
Confidence 4678899999999987 48999999987642100 0 00111211 3588999999999999999999999999
Q ss_pred HHHhhccccc-cCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceec
Q 029532 81 FLDATGGLWR-TQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFA 159 (192)
Q Consensus 81 fld~~~~~~~-~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (192)
+||.+...|. ...|.+|++++++++|+.+ ...++..++..|...++.+++........ ...|+
T Consensus 112 aiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~p~~v~i~~a--------------~~~fd 175 (219)
T TIGR02690 112 QIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTIPNQSSVAKA--------------FDEFD 175 (219)
T ss_pred HHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCccccchhhhhhh--------------HhhcC
Confidence 9999986542 1358999999988765433 34678899999999999998764332110 11132
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 029532 160 GDGSRQPTELELEQAFHQGKHIAGIAKKLK 189 (192)
Q Consensus 160 ~~~~~~p~~~~~~~~~~lg~~la~~~~~~~ 189 (192)
.+|. ..|++..+.++++.+.+...++..+
T Consensus 176 ~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 176 EAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred cCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 2343 5677788888888888887776543
No 22
>PRK01355 azoreductase; Reviewed
Probab=99.72 E-value=8.3e-17 Score=122.92 Aligned_cols=131 Identities=17% Similarity=0.087 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHhcccc-CCceeEEEEcCCCCCHHHhc--cc-CCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHH
Q 029532 2 YGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLG--KM-SAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQ 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~ 77 (192)
+|||.+|++++++++++. .+.+|+.++|.+...+.++. .. .++..++......++|.+||+|||+||+||+++|++
T Consensus 16 ~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~ 95 (199)
T PRK01355 16 KSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPAT 95 (199)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHH
Confidence 689999999999999873 25799999998864321111 11 112112221224789999999999999999999999
Q ss_pred HHHHHHhhccc---c-----c----cCCCCCCcEEEEEecCCCCCCh--HHHHHHHHHHHHHcCCEEec
Q 029532 78 FKAFLDATGGL---W-----R----TQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 78 ~k~fld~~~~~---~-----~----~~~l~gK~~~~~~s~g~~~g~~--~~~l~~~~~~l~~~g~~vv~ 132 (192)
||+||||+... + . ...++||++.+++++|...+.. ......++..+...|+..+.
T Consensus 96 LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G~~~~~ 164 (199)
T PRK01355 96 LKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLGAKVVD 164 (199)
T ss_pred HHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcCCCcee
Confidence 99999998531 1 0 1247899999999988643221 23455677777788887764
No 23
>PRK09271 flavodoxin; Provisional
Probab=99.70 E-value=3.2e-16 Score=115.75 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCC-chHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM-MAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~-~~~~~k 79 (192)
|+|||++||+.|++++++ .|++++++++.+....+ ...++.++|+||||||||+++ +|..++
T Consensus 10 ~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~----------------~~~~~~~~d~vilgt~T~~~G~~p~~~~ 72 (160)
T PRK09271 10 LSGNTREVAREIEERCEE-AGHEVDWVETDVQTLAE----------------YPLDPEDYDLYLLGTWTDNAGRTPPEMK 72 (160)
T ss_pred CCchHHHHHHHHHHHHHh-CCCeeEEEecccccccc----------------cccCcccCCEEEEECcccCCCcCCHHHH
Confidence 799999999999999988 69999988876532110 125677999999999999755 566899
Q ss_pred HHHHhhccccccCCCCCCcEEEEEec--CCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccce
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYST--GSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGT 157 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~--g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (192)
.|++.+.. ...++|++++|+++ +|.+.-...+.+.+...|... .+.+.+
T Consensus 73 ~f~~~l~~----~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~-------------------- 123 (160)
T PRK09271 73 RFIAELAE----TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKI-------------------- 123 (160)
T ss_pred HHHHHHHH----HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceee--------------------
Confidence 99999852 23478999999997 443111224455666655421 122221
Q ss_pred ecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Q 029532 158 FAGDGSRQPTE-LELEQAFHQGKHIAGIA 185 (192)
Q Consensus 158 ~~~~~~~~p~~-~~~~~~~~lg~~la~~~ 185 (192)
+..|++ .++++++++++++++.+
T Consensus 124 -----~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 124 -----EQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred -----ecCCccchhHHHHHHHHHHHHHHh
Confidence 235654 46899999999999877
No 24
>PRK09739 hypothetical protein; Provisional
Probab=99.68 E-value=1.1e-16 Score=122.16 Aligned_cols=107 Identities=20% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCC--CHHHhcccCC-----CCCCCCCCCChhHhhhCCEEEEeccccCCCc
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL--PEEVLGKMSA-----PPKSDVPIITPNELAEADGFVFGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~ 74 (192)
.|+|.++++.+.+++++ .|.+++++||.+.. |+..|..+.+ +..++......++|.+||+|||++|+||+++
T Consensus 16 ~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~ 94 (199)
T PRK09739 16 DSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSF 94 (199)
T ss_pred CCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcc
Confidence 58899999999999998 58899999998753 3222211111 1111111124689999999999999999999
Q ss_pred hHHHHHHHHhhccc-cc---cCCCCCCcEEEEEecCCCC
Q 029532 75 AAQFKAFLDATGGL-WR---TQQLAGKPAGMFYSTGSQG 109 (192)
Q Consensus 75 ~~~~k~fld~~~~~-~~---~~~l~gK~~~~~~s~g~~~ 109 (192)
|+.||.|||++... |. ...+.+|++.++.+.|+..
T Consensus 95 Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 95 PAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred hHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 99999999998522 11 1347889998888876643
No 25
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.67 E-value=2e-15 Score=112.27 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++|||+++|+.|++.+.+ .+++++++.+. ...++.++|.||||+||| ++.+|..++
T Consensus 9 ~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~--------------------~~~~l~~~d~ii~gspty~~g~~p~~~~ 65 (167)
T TIGR01752 9 DTGNTEGIAEKIQKELGE---DDVDVFNIAKA--------------------SKEDLNAYDKLILGTPTWGVGELQEDWE 65 (167)
T ss_pred CCChHHHHHHHHHHHhCC---CceEEEEcccC--------------------CHhHHhhCCEEEEEecCCCCCcCcHHHH
Confidence 589999999999999954 35788888763 236889999999999999 577888999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCC-CC-ChHHHHHHHHHHHHHcCCEEecCCccCCCCcccc
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GG-GQETTALTAITQLVHHGMIFVPIGYTFGAGMFEM 144 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~ 144 (192)
.|++.+. ...++||++++|++++.. .+ ....++..+.+.|...|..+++.....++.+..+
T Consensus 66 ~fl~~l~----~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~ 128 (167)
T TIGR01752 66 DFLPTLE----ELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEAS 128 (167)
T ss_pred HHHHHhh----cCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccc
Confidence 9999885 236789999999986532 11 2235567888889999999998755555554433
No 26
>PRK13556 azoreductase; Provisional
Probab=99.67 E-value=1e-15 Score=117.65 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHhcccc-CCceeEEEEcCCCCC----HHHhcccCC----CC-C------CCCCCCChhHhhhCCEEEE
Q 029532 2 YGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLP----EEVLGKMSA----PP-K------SDVPIITPNELAEADGFVF 65 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~----~~~~~~~~~----~~-~------~~~~~~~~~~l~~aD~ii~ 65 (192)
+++|.++++++++.+++. .|.+|+++||.+... ++....|.. |. . .+..+...++|.+||.|||
T Consensus 16 ~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iVi 95 (208)
T PRK13556 16 QAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADKYLNQFLEADKVVF 95 (208)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHCCEEEE
Confidence 589999999999999873 378999999987532 322222211 11 1 0111123689999999999
Q ss_pred eccccCCCchHHHHHHHHhhccc-----cc----cCCCCCCcEEEEEecCCCCC-----ChHHHHHHHHHHHHHcCCEEe
Q 029532 66 GFPTRFGMMAAQFKAFLDATGGL-----WR----TQQLAGKPAGMFYSTGSQGG-----GQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 66 gsP~y~g~~~~~~k~fld~~~~~-----~~----~~~l~gK~~~~~~s~g~~~g-----~~~~~l~~~~~~l~~~g~~vv 131 (192)
++|.||+++|+.||+|||++... +. ...+.+|++.+++++|+... +.......++..|...|+..+
T Consensus 96 ~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~~l~~il~~~G~~~~ 175 (208)
T PRK13556 96 AFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVKYVASMMGFFGVTNM 175 (208)
T ss_pred eccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHHHHHHHHHhcCCCce
Confidence 99999999999999999999743 10 12488999999998876441 122334567777888888776
Q ss_pred cC
Q 029532 132 PI 133 (192)
Q Consensus 132 ~~ 133 (192)
+.
T Consensus 176 ~~ 177 (208)
T PRK13556 176 ET 177 (208)
T ss_pred eE
Confidence 53
No 27
>PRK12359 flavodoxin FldB; Provisional
Probab=99.66 E-value=4.3e-15 Score=110.48 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
.+|||+.+|+.|++.+.. ..++++++.+. ..+++.++|.||||+||| .|.++..+.
T Consensus 10 ~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~--------------------~~~~l~~yD~iIlG~pTw~~Gel~~d~~ 66 (172)
T PRK12359 10 STCYTEMAAEKIRDIIGE---ELVDLHNLKDD--------------------PPKLMEQYDVLILGIPTWDFGEIQEDWE 66 (172)
T ss_pred CCCHHHHHHHHHHHHhCC---CeEEEEEcccC--------------------ChhHHccCCEEEEEecccCCCcCcHHHH
Confidence 489999999999998832 25778887763 247899999999999998 577889999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCC-CCC-hHHHHHHHHHHHHHcCCEEecCCccCCCCcccccccc-CCC-CCcc
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQ-GGG-QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVK-GGS-PYGA 155 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~-~g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~-~~~-~~g~ 155 (192)
.|++.+. ...|+||++++|+++++. ++. ...++..+...|...|.++|+.....++.|...+.+. .|. +.|.
T Consensus 67 ~~~~~l~----~~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl 142 (172)
T PRK12359 67 AVWDQLD----DLNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGL 142 (172)
T ss_pred HHHHHHh----hCCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEE
Confidence 9999885 346899999999987653 222 2355677888888899999998777888887777654 333 5554
No 28
>PRK06934 flavodoxin; Provisional
Probab=99.63 E-value=1.1e-15 Score=117.36 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCH---HHhcccCCCCCCC-CCCC--ChhHhhhCCEEEEeccccCCCc
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE---EVLGKMSAPPKSD-VPII--TPNELAEADGFVFGFPTRFGMM 74 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~---~~~~~~~~~~~~~-~~~~--~~~~l~~aD~ii~gsP~y~g~~ 74 (192)
+.|||+++|+.|++.+ |.++.-+...+.++. ............+ .|+. ...++.+||.|+||+|+||+++
T Consensus 69 ~~GnTk~vAe~Ia~~~----gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~ 144 (221)
T PRK06934 69 VLGSTQYVAQIIQEET----GGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWWYKM 144 (221)
T ss_pred CCCHHHHHHHHHHHHH----CCCEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhhccc
Confidence 4699999999999987 334444443333221 1221111111111 2322 2579999999999999999999
Q ss_pred hHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHH
Q 029532 75 AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 123 (192)
Q Consensus 75 ~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l 123 (192)
|++|+.|||+. .+.||.+++|+|+|+++ ...++..++..+
T Consensus 145 P~~V~tFLe~~-------d~~GK~I~pF~T~ggsg--~g~s~~~i~~l~ 184 (221)
T PRK06934 145 PMVMYSFFEQH-------DFSGKTLIPFTTHGGSR--FSDSLREIKRLQ 184 (221)
T ss_pred cHHHHHHHHhc-------CCCCCEEEEEEecCCCC--ccchHHHHHHHc
Confidence 99999999997 58999999999987643 335566666543
No 29
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.60 E-value=1.5e-14 Score=104.50 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeE-EEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAK-LWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQF 78 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~ 78 (192)
++|||+++|+.|++.+.+ .|++++ ++++.+.. ....++.++|.||||||+| +|.+|..+
T Consensus 10 ~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~~------------------~~~~~~~~~d~iilgs~t~~~g~~p~~~ 70 (140)
T TIGR01754 10 LSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTLA------------------DAPLDPENYDLVFLGTWTWERGRTPDEM 70 (140)
T ss_pred CCChHHHHHHHHHHHHhh-CCeeEEecccccccc------------------cCcCChhhCCEEEEEcCeeCCCcCCHHH
Confidence 689999999999999987 588887 45554310 0124677899999999998 56788899
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCC--hHHHHHHHHHHHHH
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVH 125 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~--~~~~l~~~~~~l~~ 125 (192)
+.|++.+. .++|++++|++++...++ ...+.+.+...|..
T Consensus 71 ~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~ 112 (140)
T TIGR01754 71 KDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGS 112 (140)
T ss_pred HHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcC
Confidence 99999984 378999999998533222 22456677766633
No 30
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.55 E-value=4.8e-14 Score=107.59 Aligned_cols=129 Identities=26% Similarity=0.248 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHhccccCC-ceeEEEEcCCCCCHHHhcc-------cCC-CCCCCC-CCCChhHhhhCCEEEEeccccC
Q 029532 2 YGHVEKLAEEIKKGASSVEG-VEAKLWQVPETLPEEVLGK-------MSA-PPKSDV-PIITPNELAEADGFVFGFPTRF 71 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g-~ev~~~~l~~~~~~~~~~~-------~~~-~~~~~~-~~~~~~~l~~aD~ii~gsP~y~ 71 (192)
.++|.+|++.+.+++++ .+ .+|+++||.+. +...+.. ... ....+. .+. .+++.+||.|||++|+||
T Consensus 14 ~S~s~~l~~~~~~~~~~-~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~AD~iV~~~Pl~~ 90 (199)
T PF02525_consen 14 GSFSRALADAFLEGLQE-AGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELLWADHIVFAFPLYW 90 (199)
T ss_dssp TSHHHHHHHHHHHHHHH-HTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHHHSSEEEEEEEEBT
T ss_pred cCHHHHHHHHHHHHHHH-cCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHHHcCcceEecccee
Confidence 47899999999999999 47 89999999986 3222211 000 000011 111 389999999999999999
Q ss_pred CCchHHHHHHHHhhccc---c--------ccCCCCCCcEEEEEecCCCC---C-------ChHHHHHHHHHHHHHcCCEE
Q 029532 72 GMMAAQFKAFLDATGGL---W--------RTQQLAGKPAGMFYSTGSQG---G-------GQETTALTAITQLVHHGMIF 130 (192)
Q Consensus 72 g~~~~~~k~fld~~~~~---~--------~~~~l~gK~~~~~~s~g~~~---g-------~~~~~l~~~~~~l~~~g~~v 130 (192)
+++|++||.|||++... + ....|+||++.+++|+|+.. + ..+..+..++..+...|+..
T Consensus 91 ~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~G~~~ 170 (199)
T PF02525_consen 91 FSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRGILKFCGIKD 170 (199)
T ss_dssp TBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHHHHHHTTEEE
T ss_pred cccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHHHHHhCCCce
Confidence 99999999999998421 1 13578999999999988651 1 12455566788888999999
Q ss_pred ecC
Q 029532 131 VPI 133 (192)
Q Consensus 131 v~~ 133 (192)
+..
T Consensus 171 ~~~ 173 (199)
T PF02525_consen 171 VES 173 (199)
T ss_dssp EEE
T ss_pred eeE
Confidence 864
No 31
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.55 E-value=3.1e-14 Score=104.50 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCH---HHhcccC----CC-CCCCCCCC--ChhHhhhCCEEEEecccc
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPE---EVLGKMS----AP-PKSDVPII--TPNELAEADGFVFGFPTR 70 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~---~~~~~~~----~~-~~~~~~~~--~~~~l~~aD~ii~gsP~y 70 (192)
.+|||+++|+.|++.+ |+++.-+...+.++. ....... .. .....|+. ...++.+||.|++|+|+|
T Consensus 9 ~tGnT~~vA~~Ia~~~----gadi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~PvW 84 (156)
T PF12682_consen 9 RTGNTKKVAEKIAEKT----GADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGTPVW 84 (156)
T ss_dssp SSSHHHHHHHHHHHCC----T-EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEEEEEEEE
T ss_pred CCchHHHHHHHHHHHH----CCCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCEEEEechHH
Confidence 4799999999999876 545544443333343 1110000 00 11112332 246899999999999999
Q ss_pred CCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHH
Q 029532 71 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQL 123 (192)
Q Consensus 71 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l 123 (192)
|+++|++|..||+.. .++||.++.|+|+|++ +...++..|+..+
T Consensus 85 ~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 85 WGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp TTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 999999999999986 5899999999998764 3345666776543
No 32
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.53 E-value=6.2e-14 Score=101.41 Aligned_cols=116 Identities=28% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCC-chHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM-MAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~-~~~~~k 79 (192)
++|||++||+.|++++++ .|++++++++.+.+.. ..++.+++.+||++|||+.+ +|..++
T Consensus 6 ~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~sT~~~g~~p~~~~ 66 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDDS------------------PSDLSEYDLLIFGVSTYGEGEPPDNAK 66 (143)
T ss_dssp SSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCHH------------------HHHHCTTSEEEEEEEEETTTEESGGGH
T ss_pred CchhHHHHHHHHHHHHHH-cCCceeeechhhhhhh------------------hhhhhhhceeeEeecccCCCcchhhhh
Confidence 699999999999999998 6999999999875210 35899999999999999854 564444
Q ss_pred HHHHhhcccc----ccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 80 AFLDATGGLW----RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 80 ~fld~~~~~~----~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
.|+..+...+ ....++++++++|+.+++..+..-.+.+.+...|...|+.++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~ 126 (143)
T PF00258_consen 67 EFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLL 126 (143)
T ss_dssp HHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSE
T ss_pred hhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcE
Confidence 3444433221 1246899999999988766544335567899999999999997644
No 33
>PRK13555 azoreductase; Provisional
Probab=99.51 E-value=5.3e-13 Score=102.39 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHhcccc-CCceeEEEEcCCCCCH----HHhcccCCC-----CCCC----CC--CCChhHhhhCCEEEEe
Q 029532 3 GHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPE----EVLGKMSAP-----PKSD----VP--IITPNELAEADGFVFG 66 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~~----~~~~~~~~~-----~~~~----~~--~~~~~~l~~aD~ii~g 66 (192)
..|.++++.+.+.+++. .+.+|+.+||.+..++ ..+...... ..++ .+ ....+++.+||.|||+
T Consensus 17 S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AD~lvi~ 96 (208)
T PRK13555 17 AVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATVDQYLNQFLEADKVVFA 96 (208)
T ss_pred cHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHHHHHHHHHHHcCEEEEE
Confidence 57899999999999874 2379999999986432 111111111 0100 01 1136899999999999
Q ss_pred ccccCCCchHHHHHHHHhhccc---c------ccCCCCCCcEEEEEecCCCCCCh-----HHHHHHHHHHHHHcCCEEe
Q 029532 67 FPTRFGMMAAQFKAFLDATGGL---W------RTQQLAGKPAGMFYSTGSQGGGQ-----ETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 67 sP~y~g~~~~~~k~fld~~~~~---~------~~~~l~gK~~~~~~s~g~~~g~~-----~~~l~~~~~~l~~~g~~vv 131 (192)
+|.||+++|+.||.|||++... + ..+.++||++.+++++|+...+. ......++..|...|+..+
T Consensus 97 ~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 97 FPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVNYVTTVLGFWGITNP 175 (208)
T ss_pred cCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHHHHHHHHHhcCCCce
Confidence 9999999999999999998632 1 01358899999999977644331 2223466666666777543
No 34
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.48 E-value=1.3e-13 Score=103.33 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
++|||+++|+.|++.+.. |++++++++.+. ...++.+||.||||+|+|+|.+++.++.
T Consensus 10 ~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~--------------------~~~~l~~yD~vIlGspi~~G~~~~~~~~ 67 (177)
T PRK11104 10 RDGQTRKIASYIASELKE--GIQCDVVNLHRI--------------------EEPDLSDYDRVVIGASIRYGHFHSALYK 67 (177)
T ss_pred CCChHHHHHHHHHHHhCC--CCeEEEEEhhhc--------------------CccCHHHCCEEEEECccccCCcCHHHHH
Confidence 589999999999999974 788999988753 1257899999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTG 106 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g 106 (192)
|+++.. ..+++|++++|+++.
T Consensus 68 fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 68 FVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHHHH-----HHhCCCeEEEEEech
Confidence 999863 468999999999874
No 35
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=102.70 Aligned_cols=120 Identities=24% Similarity=0.309 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHhccccCCc-eeEEEEcCCCCCHHHhcccCCCCCCCCCC---CChhHhhhCCEEEEeccccCCCchHHH
Q 029532 3 GHVEKLAEEIKKGASSVEGV-EAKLWQVPETLPEEVLGKMSAPPKSDVPI---ITPNELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~-ev~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
..|..+++.+.+.++. .+. ++..+++..-..++.... ++.|. ...+.|.+||++||+||+|++++|+.+
T Consensus 14 S~~~~la~~~~~~l~~-~~~~~~~~~~~~lP~~~~d~~~------~~~p~~v~~~~~~i~~aD~li~~tPeYn~s~pg~l 86 (184)
T COG0431 14 SFNRALAEAAAKLLPA-GGEVEVEFDDLDLPLYNEDLEA------DGLPPAVQALREAIAAADGLIIATPEYNGSYPGAL 86 (184)
T ss_pred chHHHHHHHHHHhhcc-cCceEEEecccccCCCCcchhh------ccCCHHHHHHHHHHHhCCEEEEECCccCCCCCHHH
Confidence 4578899999999988 353 333334321111111100 12222 146899999999999999999999999
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
|+.||.+.. ..|.+|++++++++++..++ .....+++..+...++.+++.+
T Consensus 87 KnaiD~l~~----~~~~~Kpv~~~~~s~g~~~~-~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 87 KNAIDWLSR----EALGGKPVLLLGTSGGGAGG-LRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred HHHHHhCCH----hHhCCCcEEEEecCCCchhH-HHHHHHHHHHHHhcCceecccc
Confidence 999999973 46899999999988776544 4567889999999999998764
No 36
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.46 E-value=2.1e-13 Score=98.84 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
++|||+++|+.|++.+.+ . +..+++.+.. ....++.++|.||||+|+|.+.+++.|+.
T Consensus 7 ~~G~Tk~~A~~ia~~l~~-~---~~~v~~~~~~------------------~~~~~~~~yD~vi~gspiy~g~~~~~~~~ 64 (143)
T PF12724_consen 7 KTGNTKKIAEWIAEKLGE-E---GELVDLEKVE------------------EDEPDLSDYDAVIFGSPIYAGRIPGEMRE 64 (143)
T ss_pred CCchHHHHHHHHHHHHhh-h---ccEEEHHhhh------------------hcccccccCCEEEEEEEEECCcCCHHHHH
Confidence 589999999999999976 3 3344444310 01368999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGG 110 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g 110 (192)
|+++.. ..+++|++++|+++++...
T Consensus 65 fi~~~~-----~~l~~k~v~~f~~~~~~~~ 89 (143)
T PF12724_consen 65 FIKKNK-----DNLKNKKVALFSVGGSSPE 89 (143)
T ss_pred HHHHHH-----HHHcCCcEEEEEEeCCCCc
Confidence 999974 4689999999999988543
No 37
>PRK07116 flavodoxin; Provisional
Probab=99.44 E-value=9e-13 Score=97.30 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHH---hcc-cCC-C---CCCCCCCC--ChhHhhhCCEEEEecccc
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEV---LGK-MSA-P---PKSDVPII--TPNELAEADGFVFGFPTR 70 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~---~~~-~~~-~---~~~~~~~~--~~~~l~~aD~ii~gsP~y 70 (192)
.+|||+++|+.|++.+.. .. +++....+. +... ... ... . .....|.. ...++.++|.||||+|+|
T Consensus 12 ~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~y-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~Iiig~Pv~ 87 (160)
T PRK07116 12 ATGTTKKVAEKLAEVTGA-DL--FEIKPEQPY-TAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDVIFLGFPIW 87 (160)
T ss_pred CCCcHHHHHHHHHHHhcC-Ce--EEEeeCCCC-CcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCEEEEECChh
Confidence 489999999999999854 12 223222221 1100 000 000 0 00011110 135789999999999999
Q ss_pred CCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHH
Q 029532 71 FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQ 122 (192)
Q Consensus 71 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~ 122 (192)
++++|+.++.||+++ .+.||++++|+|+|++..+ .++..++..
T Consensus 88 ~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~g--~~~~~~~~~ 130 (160)
T PRK07116 88 WYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGIG--NAEKELKKS 130 (160)
T ss_pred ccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCcC--cHHHHHHHH
Confidence 999999999999985 4789999999998765422 234455543
No 38
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.43 E-value=3.4e-12 Score=92.79 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++|||+.+|+.+++.+.+ .|.+++++++.+ .+++.++|.+||++||| .|.+|...+
T Consensus 11 ~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~----------------------~~~l~~~~~li~~~sT~G~Ge~p~~~~ 67 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEE-AGFSTETLHGPL----------------------LDDLSASGLWLIVTSTHGAGDLPDNLQ 67 (146)
T ss_pred CchHHHHHHHHHHHHHHH-cCCceEEeccCC----------------------HHHhccCCeEEEEECCCCCCCCChhHH
Confidence 589999999999999988 598988876542 36788999999999999 788999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
.|++.+... ...++|+++++|+.+.+.+.........+...|...|.+.+.+.
T Consensus 68 ~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 120 (146)
T PRK09004 68 PFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGET 120 (146)
T ss_pred HHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeecc
Confidence 999988531 23689999999999877543333455778888999999988654
No 39
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.35 E-value=4e-11 Score=88.20 Aligned_cols=73 Identities=27% Similarity=0.435 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
++|||+++|++|++.+.. .+++++.+. .+.+.++|.|++|+++|.|+++..++.
T Consensus 7 ~TGNTkkvA~aI~~~l~~-----~~~~~~~~~---------------------~~~~~~yD~i~lG~w~d~G~~d~~~~~ 60 (160)
T PF12641_consen 7 RTGNTKKVAEAIAEALGA-----KDIVSVEEP---------------------PEDLEDYDLIFLGFWIDKGTPDKDMKE 60 (160)
T ss_pred CCChHHHHHHHHHHHCCC-----ceeEecccc---------------------ccCCCCCCEEEEEcCccCCCCCHHHHH
Confidence 589999999999999842 456666552 123899999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQ 108 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~ 108 (192)
||.++ +||++++|+|+|..
T Consensus 61 fl~~l---------~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 61 FLKKL---------KGKKVALFGTAGAG 79 (160)
T ss_pred HHHHc---------cCCeEEEEEecCCC
Confidence 99875 67999999999764
No 40
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.34 E-value=4.4e-11 Score=87.46 Aligned_cols=138 Identities=21% Similarity=0.167 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCC-CchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFG-MMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g-~~~~~~k 79 (192)
++|||+.+|+.|++.+.+ .+.++.+...... ....+.++|.+++|||+|.. ..+..+.
T Consensus 11 ~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~~--------------------~~~~~~~~d~~~~g~~t~~~ge~~~~~~ 69 (151)
T COG0716 11 RTGNTEKVAEIIAEELGA-DGFEVDIDIRPGI--------------------KDDLLESYDELLLGTPTWGAGELPDDWY 69 (151)
T ss_pred CCCcHHHHHHHHHHHhcc-CCceEEEeecCCc--------------------chhhhccCCEEEEEeCCCCCCcCCccHH
Confidence 689999999999999988 5888844433321 12344699999999999974 4556999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCC-hHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCcccee
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGG-QETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTF 158 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~ 158 (192)
.|++.+.. ..+++|++++|+++.+.... .......+...+...|...++..-..+.
T Consensus 70 ~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~------------------- 126 (151)
T COG0716 70 DFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGY------------------- 126 (151)
T ss_pred HHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccce-------------------
Confidence 99999973 37899999999995444333 2345667888888888544332111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029532 159 AGDGSRQPTELELEQAFHQGKHIAGI 184 (192)
Q Consensus 159 ~~~~~~~p~~~~~~~~~~lg~~la~~ 184 (192)
..+..|++++.++++++++++...
T Consensus 127 --~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 127 --IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred --eccCCCCCccHHHHHHHHHHHHhh
Confidence 002358888999999999887653
No 41
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=87.80 Aligned_cols=114 Identities=24% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHhccc-cCCceeEEEEcCCCCCHHHhcccCCC--CCCCC-C---CCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 8 LAEEIKKGASS-VEGVEAKLWQVPETLPEEVLGKMSAP--PKSDV-P---IITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 8 la~~i~~~l~~-~~g~ev~~~~l~~~~~~~~~~~~~~~--~~~~~-~---~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
+|.++.+.-++ ..|.+++.+|+.+..-. .-+....+ ..|.+ + ++..++|.++|.|+|.||.||+++|+.+|+
T Consensus 29 ia~~v~e~~ke~~~~l~ie~vDls~lPL~-~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~ivFvtPqYN~gypA~LKN 107 (199)
T KOG4530|consen 29 IARAVIELTKESVPGLQIEYVDLSPLPLI-NTDLEVNPIKSVDEYYPPVTEAWRQKILEADSIVFVTPQYNFGYPAPLKN 107 (199)
T ss_pred HHHHHHHhhhccCCCCceEEEeccCCccc-cCCcccCccccccccCcHHHHHHHHHHhhcceEEEecccccCCCchHHHH
Confidence 45555544443 25788999999874110 00000011 11222 1 124689999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEE
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIF 130 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~v 130 (192)
.||+++ ..|.||++.++ |||+.+|+. ...++++......|.|
T Consensus 108 AlD~ly-----heW~gKPaliv-SyGGhGGg~--c~~qL~~v~~fLkm~v 149 (199)
T KOG4530|consen 108 ALDWLY-----HEWAGKPALIV-SYGGHGGGR--CQYQLRQVGVFLKMHV 149 (199)
T ss_pred HHHHhh-----hhhcCCceEEE-EecCCCCch--HHHHHHHHHhhheeee
Confidence 999997 46899999766 555554442 3345555555555554
No 42
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.32 E-value=2.2e-11 Score=91.44 Aligned_cols=103 Identities=20% Similarity=0.162 Sum_probs=70.5
Q ss_pred CceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhccc-cc----cCCCC
Q 029532 21 GVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR----TQQLA 95 (192)
Q Consensus 21 g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~-~~----~~~l~ 95 (192)
..+|++.||....|... .|.. ...+.+.+||.|||.+|.||+++|+.||.|||++... |. ...++
T Consensus 33 ~~~v~~~DL~~~~p~~~---------~d~~-~eq~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~ 102 (184)
T PRK04930 33 LEHVTVHDLYAHYPDFF---------IDIP-HEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALA 102 (184)
T ss_pred CCceEEEECcccCCCCC---------CCHH-HHHHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccC
Confidence 45789999988643110 0111 1257899999999999999999999999999998632 21 13589
Q ss_pred CCcEEEEEecCCCCC-----Ch-----HHHHHHHHHHHHHcCCEEecC
Q 029532 96 GKPAGMFYSTGSQGG-----GQ-----ETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 96 gK~~~~~~s~g~~~g-----~~-----~~~l~~~~~~l~~~g~~vv~~ 133 (192)
||++.++.|.|+... +. +.-+..+...+...||.++++
T Consensus 103 gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 103 GKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred CCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCc
Confidence 999999888776421 11 112333444556779988764
No 43
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.29 E-value=9e-11 Score=88.03 Aligned_cols=131 Identities=21% Similarity=0.115 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHhcccc-CCceeEEEEcCCCCC----HHHhcccCCCC--C--C------CCCCCChhHhhhCCEEEEe
Q 029532 2 YGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLP----EEVLGKMSAPP--K--S------DVPIITPNELAEADGFVFG 66 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~----~~~~~~~~~~~--~--~------~~~~~~~~~l~~aD~ii~g 66 (192)
...|.++++++.+..+++ .+.++...||..... .+...+.+... . . +..+...+++..||.|||+
T Consensus 15 ~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~l~~ef~aAD~vVi~ 94 (202)
T COG1182 15 NSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDKLLEEFLAADKVVIA 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHHHHHHHHhcCeEEEE
Confidence 356889999999999863 466888889887532 23333222111 1 0 0111246899999999999
Q ss_pred ccccCCCchHHHHHHHHhhcccc---------ccCCCCCCcEEEEEecCCCCCCh----HHHHHHHHHHHHHcCCEEec
Q 029532 67 FPTRFGMMAAQFKAFLDATGGLW---------RTQQLAGKPAGMFYSTGSQGGGQ----ETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 67 sP~y~g~~~~~~k~fld~~~~~~---------~~~~l~gK~~~~~~s~g~~~g~~----~~~l~~~~~~l~~~g~~vv~ 132 (192)
+|.||.++|+++|+|||++.... ..+.+.||++.++.+.|+.+++. +.....|+..|...|+.-+.
T Consensus 95 ~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~YLr~ilgF~Gitd~~ 173 (202)
T COG1182 95 APMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPYLRTILGFLGITDVE 173 (202)
T ss_pred ecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHHHHHHhhhcCCCcce
Confidence 99999999999999999995221 12467899999999988776543 55667888888888887654
No 44
>PRK08105 flavodoxin; Provisional
Probab=99.26 E-value=1.8e-10 Score=84.05 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++|||+.+|+.+++.+.+ .|+++.+.++.+.. .....++|.|||++||| .|.+|..++
T Consensus 11 ~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~~--------------------~~~~~~~~~vi~~~sT~G~Ge~p~~~~ 69 (149)
T PRK08105 11 VYGNALLVAEEAEAILTA-QGHEVTLFEDPELS--------------------DWQPYQDELVLVVTSTTGQGDLPDSIV 69 (149)
T ss_pred CchHHHHHHHHHHHHHHh-CCCceEEechhhCC--------------------chhcccCCeEEEEECCCCCCCCChhHH
Confidence 489999999999999988 59999988875421 12234579999999999 788999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
.|++.+... ...++|+++++|+.++..+.........+...|...|.+.+.+.
T Consensus 70 ~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 122 (149)
T PRK08105 70 PLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGER 122 (149)
T ss_pred HHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeecc
Confidence 999998632 12689999999999876542223556778888899999988653
No 45
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.22 E-value=8.7e-11 Score=87.68 Aligned_cols=101 Identities=18% Similarity=0.306 Sum_probs=69.0
Q ss_pred eeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhccc-cc----cCCCCCC
Q 029532 23 EAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGL-WR----TQQLAGK 97 (192)
Q Consensus 23 ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~-~~----~~~l~gK 97 (192)
+|+++||.+.+|.... |.. ...+.|.+||.|||.+|.||+++|+.||.|||++... |. ...++||
T Consensus 29 ~v~v~dL~~~~p~~~~---------dv~-~eq~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk 98 (176)
T PRK00871 29 GVEIRSLYQLYPDFNI---------DIA-AEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGK 98 (176)
T ss_pred CeEEEEChhhcCCcch---------hHH-HHHHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCC
Confidence 6888898876442110 111 1257899999999999999999999999999998531 21 1358999
Q ss_pred cEEEEEecCCCC-----CCh---HHHHHHHHHHHHHcCCEEecC
Q 029532 98 PAGMFYSTGSQG-----GGQ---ETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 98 ~~~~~~s~g~~~-----g~~---~~~l~~~~~~l~~~g~~vv~~ 133 (192)
++.++.|.|+.. ++. +.-+..+...+...||..+++
T Consensus 99 ~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~ 142 (176)
T PRK00871 99 HLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPP 142 (176)
T ss_pred EEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcce
Confidence 998887776641 111 122445555566788888764
No 46
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.21 E-value=5.7e-11 Score=89.67 Aligned_cols=102 Identities=23% Similarity=0.201 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHh
Q 029532 5 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 5 T~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~ 84 (192)
|..+++.+.+.+.+ .|+++...++.....+.+..........|.. ...++|.+||.|||.-|.||+++|+.||.||||
T Consensus 15 ~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~-~E~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDr 92 (189)
T COG2249 15 THALSDAALERLNE-AGHEVALKDLYALGFDPYLTYPDGEFPIDVK-AEQEKLLWADVIVLQFPLWWYSMPALLKGWIDR 92 (189)
T ss_pred hHHHHHHHHHHHHH-cchHHHhhhhhhhcCCceeecCccCCCCCHH-HHHHHHHhcceEEEEcCchhccCcHHHHHHHHH
Confidence 46788899999988 5888888777664221111000000011111 136899999999999999999999999999999
Q ss_pred hccc-c---cc-----CCCCCCcEEEEEecCCC
Q 029532 85 TGGL-W---RT-----QQLAGKPAGMFYSTGSQ 108 (192)
Q Consensus 85 ~~~~-~---~~-----~~l~gK~~~~~~s~g~~ 108 (192)
+... | .. ..+.||++.+++|.|.+
T Consensus 93 V~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 93 VFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred HhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 8532 1 11 46899999999998764
No 47
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.10 E-value=1.4e-10 Score=83.47 Aligned_cols=100 Identities=19% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
++|+|.++|+.++..|++ .|.+|++.|+... ...++.++|.||+|+|+|.+.....++.
T Consensus 10 r~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~--------------------~~~~l~~ydavVIgAsI~~~h~~~~~~~ 68 (175)
T COG4635 10 RDGQTRKIAEYIASHLRE-SGIQVDIQDLHAV--------------------EEPALEDYDAVVIGASIRYGHFHEAVQS 68 (175)
T ss_pred CCCcHHHHHHHHHHHhhh-cCCeeeeeehhhh--------------------hccChhhCceEEEecchhhhhhHHHHHH
Confidence 579999999999999999 6999999998763 1248999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcEEEEEecCCCCCC--hHHHHHHHHHHHHHc
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHH 126 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~--~~~~l~~~~~~l~~~ 126 (192)
|+.+.. ..|..||.++|++.=..... ...+-..++.++...
T Consensus 69 Fv~k~~-----e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~ 111 (175)
T COG4635 69 FVKKHA-----EALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKS 111 (175)
T ss_pred HHHHHH-----HHHhcCCceEEEeehhhcccccCchHHHHHHHHHhcC
Confidence 999974 57899999999885332222 123334566665443
No 48
>PRK05723 flavodoxin; Provisional
Probab=98.99 E-value=1.6e-08 Score=73.80 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhC--CEEEEecccc-CCCchHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEA--DGFVFGFPTR-FGMMAAQ 77 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--D~ii~gsP~y-~g~~~~~ 77 (192)
++|||+.+|+.+++.+.+ .|+++.++...+ ..++.++ |.|||++||| .|.+|..
T Consensus 10 ~tG~ae~~A~~la~~l~~-~g~~~~~~~~~~----------------------~~~~~~~~~~~li~~~sT~G~Ge~Pd~ 66 (151)
T PRK05723 10 VYGTAEEVARHAESLLKA-AGFEAWHNPRAS----------------------LQDLQAFAPEALLAVTSTTGMGELPDN 66 (151)
T ss_pred CchHHHHHHHHHHHHHHH-CCCceeecCcCC----------------------HhHHHhCCCCeEEEEECCCCCCCCchh
Confidence 589999999999999987 588776643211 2444444 9999999999 5779999
Q ss_pred HHHHHHhhccccccCCCCCCcEEEEEecCCCCC-ChHHHHHHHHHHHHHcCCEEecC
Q 029532 78 FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG-GQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 78 ~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g-~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
...|++.+.... ...|+|+++++|+.+...++ ..-.+...+...|...|.+-+..
T Consensus 67 ~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~ 122 (151)
T PRK05723 67 LMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQP 122 (151)
T ss_pred HHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeec
Confidence 999999885310 12689999999999766553 23456678888889999887764
No 49
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.86 E-value=4.1e-08 Score=86.34 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++||++.+|+.+++.+++ .|.+++++++.+. ...++.+.+.+||+++|| .|.+|..++
T Consensus 71 qTGnae~lA~~la~~l~~-~g~~~~v~~~~d~--------------------~~~~L~~~~~vl~v~ST~G~Ge~Pdna~ 129 (600)
T PRK10953 71 QTGNARRVAEQLRDDLLA-AKLNVNLVNAGDY--------------------KFKQIAQEKLLIVVTSTQGEGEPPEEAV 129 (600)
T ss_pred CchHHHHHHHHHHHHHHh-CCCCcEEechHhC--------------------CHhHhccCCeEEEEECCCCCCCCChhHH
Confidence 589999999999999988 5999999888764 247888999999999999 789999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecC
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
.|++.+...- ...|.|+++++|+.+++.+.....+-+.+...|...|.+-+..
T Consensus 130 ~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~ 182 (600)
T PRK10953 130 ALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLD 182 (600)
T ss_pred HHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 9999885221 2368999999999988775433455678888899999888754
No 50
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=98.79 E-value=8.4e-08 Score=84.52 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
++|||+.+|+.+++.+.+ .|+++++.++.+. ..+++.+++.+||+++|| .|.+|..++
T Consensus 68 qTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~--------------------~~~~l~~~~~li~v~ST~GeGe~Pdna~ 126 (597)
T TIGR01931 68 QTGNARRLAKRLAEKLEA-AGFSVRLSSADDY--------------------KFKQLKKERLLLLVISTQGEGEPPEEAI 126 (597)
T ss_pred CchHHHHHHHHHHHHHHh-CCCccEEechHHC--------------------CHhhcccCceEEEEeCCCCCCcCCHHHH
Confidence 589999999999999988 5999999988764 247788899999999999 688999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecC
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
.|++.+...- ...++|+++++|+.+.+.+.....+.+.+...|...|...+.+
T Consensus 127 ~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~ 179 (597)
T TIGR01931 127 SFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLP 179 (597)
T ss_pred HHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 9999885221 2368999999999987765333355677888888999887754
No 51
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.47 E-value=3.2e-06 Score=59.61 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-CCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-g~~~~~~k 79 (192)
++|||+++++.+ |.++..+.+.+. ....+ ++|.|++ ||+|. |.+|.++.
T Consensus 6 ~TGNte~fv~~l--------g~~~~~i~~~~~--------------------d~~~~-~~~~vli-TyT~G~G~vP~~~~ 55 (125)
T TIGR00333 6 KTGNVQRFVEKL--------GFQHIRIPVDET--------------------DDIHV-DQEFVLI-TYTGGFGAVPKQTI 55 (125)
T ss_pred ccccHHHHHHHc--------CCCcEEeecCCc--------------------chhhc-CCCEEEE-ecCCCCCcCCHHHH
Confidence 689999994332 445544544431 11344 8999988 99994 66999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCC
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGS 107 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~ 107 (192)
.|++.+. . +..++|+|+..
T Consensus 56 ~Fle~~~------n---~~~gV~gSGn~ 74 (125)
T TIGR00333 56 SFLNKKH------N---LLRGVAASGNK 74 (125)
T ss_pred HHHHhhh------h---cEEEEEEcCCC
Confidence 9999874 2 78888887543
No 52
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=98.39 E-value=5e-06 Score=59.42 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-----CCch
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-----GMMA 75 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-----g~~~ 75 (192)
.+|||+++++.+... ...+++.+. +.+...+-+||.+|||. |.+|
T Consensus 10 ~TGNt~~f~~kl~~~--------~~~i~i~~~----------------------~~~~~~~~~~lv~PTy~~g~~~G~vP 59 (134)
T PRK03600 10 KTGNTHRFVQKLGLP--------ATRIPINER----------------------ERLEVDEPYILITPTYGGGGTAGAVP 59 (134)
T ss_pred CChhHHHHHHHhCCc--------ceEEecCCC----------------------ccccCCCCEEEEEeccCCCCcCCccc
Confidence 489999887776322 234454321 22445678999999997 4899
Q ss_pred HHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCCh-HHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCc
Q 029532 76 AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQ-ETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYG 154 (192)
Q Consensus 76 ~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~-~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g 154 (192)
.+++.||+... -.....++++++....+.. ..+...+.. ..+ |+..+.
T Consensus 60 ~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~~f~~a~~~i~~---~~~---vp~l~k------------------ 108 (134)
T PRK03600 60 KQVIRFLNDEH-------NRKLLRGVIASGNRNFGDAFALAGDVISA---KCQ---VPLLYR------------------ 108 (134)
T ss_pred HHHHHHHhccc-------cCCcEEEEEEecCchHHHHHHHHHHHHHH---HhC---CCeEEE------------------
Confidence 99999998853 1234566666643322211 122222322 333 222222
Q ss_pred cceecCCCCCCCCHHHHHHHHHHHHHH
Q 029532 155 AGTFAGDGSRQPTELELEQAFHQGKHI 181 (192)
Q Consensus 155 ~~~~~~~~~~~p~~~~~~~~~~lg~~l 181 (192)
+ ...++++|.++++++.+++
T Consensus 109 ---~----El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 109 ---F----ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred ---E----ecCCCHHHHHHHHHHHHHH
Confidence 1 2467889999999888887
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=96.26 E-value=0.06 Score=39.37 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHhcccc-CCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCC-----
Q 029532 1 MYGHVEKLAEEIKKGASSV-EGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGM----- 73 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~-~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~----- 73 (192)
.+|||++.++.+...+.+. .+.++..+++.+..+. . .+.+..-.-.|+.+||| .++
T Consensus 11 ~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~----------------~-~~~~~~~~p~vli~pTY~~gG~~~~~ 73 (154)
T PRK02551 11 LSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE----------------T-TDFFPETEPFVAFLPTYLEGGNGIDN 73 (154)
T ss_pred CChhHHHHHHHHhcHHhhccccccceecccccccCc----------------c-ccccccCCCEEEEEeeecCCCCCccc
Confidence 4799999999987665331 0233334443332100 0 01133446678999999 555
Q ss_pred -----chHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 74 -----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 74 -----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
+|.++..|+..- ..+....++|+++
T Consensus 74 ~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsG 103 (154)
T PRK02551 74 GDVEILTTPLGDFIAYH-------DNAKRCLGIIGSG 103 (154)
T ss_pred CccccchHHHHHHHcch-------hhhhheEEEEeec
Confidence 677888888542 2245566777764
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=95.07 E-value=0.14 Score=43.91 Aligned_cols=110 Identities=17% Similarity=0.077 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k 79 (192)
.+||.+-+|+.+...+.. .|....+..+.+++ .++|.+.+.|||...|- .|.+|..||
T Consensus 10 qTGtA~dvAe~l~Re~~r-~~~~~~V~s~Deyd--------------------~~~ll~~~~vvFVcSTTGqGe~P~Nmk 68 (574)
T KOG1159|consen 10 QTGTAQDVAESLGREAHR-RGLQCLVMSMDEYD--------------------VEKLLDERLVVFVCSTTGQGEEPDNMK 68 (574)
T ss_pred CcccHHHHHHHHHHHHHh-ccCCceEeeccccC--------------------HhHhccCceEEEEEecCCCCCCCccHH
Confidence 379999999999999988 58778887777642 48888889998887777 588999999
Q ss_pred HHHHhhcccc-ccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 80 AFLDATGGLW-RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 80 ~fld~~~~~~-~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
.|.--+...- ....|.+-.+++++-+.++.....-+.+.+...|.+.|.+-+
T Consensus 69 ~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 69 KFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred HHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 9876664210 023467788899998777654444455678888888887655
No 55
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=94.59 E-value=0.16 Score=35.66 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC-CC----ch
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF-GM----MA 75 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-g~----~~ 75 (192)
.+|||++.++.+...+.. .-+.+... .+.+.-.+=.|+.+|||. |. +|
T Consensus 6 ~tGNt~rFv~kL~~~~~~------~~i~~~~~---------------------~~~~~~~ep~vLitpTy~~G~~~~~vp 58 (122)
T PF07972_consen 6 LTGNTRRFVEKLGLYAPA------IRIPIREI---------------------SPDLEVDEPFVLITPTYGFGENDGGVP 58 (122)
T ss_dssp SSSHHHHHHHHH-S--SE------EEE-SSCT---------------------TSTS--SS-EEEEEE-BTTTBSSTSS-
T ss_pred CCcCHHHHHHHHcccchh------cccccccc---------------------cccccCCCCEEEEecccCCCCCCCCCC
Confidence 479999999888664422 12222221 122334455789999996 54 99
Q ss_pred HHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 76 AQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 76 ~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
.++..||+.-. -.....++++|+
T Consensus 59 ~~v~~FL~~~~-------N~~~l~GVigSG 81 (122)
T PF07972_consen 59 KQVIRFLENPD-------NRKLLRGVIGSG 81 (122)
T ss_dssp HHHHHHHHSHH-------HGGGEEEEEEEE
T ss_pred HHHHHHHHHHH-------HHhhheeEEecC
Confidence 99999999431 122345666664
No 56
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=92.93 E-value=1.7 Score=30.99 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=52.6
Q ss_pred hhhCCEEEEeccccCCC-----chHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 57 LAEADGFVFGFPTRFGM-----MAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 57 l~~aD~ii~gsP~y~g~-----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
+.=-+-.|+.+|||.++ +|.++-.||..- .-+.+.-++++|+..-.|... ...-...-...+.-++
T Consensus 37 ~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSGN~NfG~~f--~~Ag~~iS~k~~vPlL 107 (141)
T COG1780 37 IEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-------HNRALCRGVIASGNRNFGDNF--ALAGDVISAKCGVPLL 107 (141)
T ss_pred ccCCCCeEEEeccccCCCccCccCHHHHHHhccc-------cchhheEEEEecCCccHHHHH--HHHHHHHHHHhCCCEE
Confidence 33345689999999755 899999888542 123344566665422222211 1111112234454433
Q ss_pred cCCccCCCCccccccccCCCCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 029532 132 PIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQAFHQGKHIAGIAKKL 188 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~lg~~la~~~~~~ 188 (192)
.. + ...-.++|++..+....++.+.....
T Consensus 108 y~-F---------------------------EL~GT~~Dv~~v~~~v~~~~~~~~~~ 136 (141)
T COG1780 108 YR-F---------------------------ELLGTAEDVAAVRKGVTEFWKRAPQN 136 (141)
T ss_pred EE-E---------------------------eccCCHHHHHHHHHHHHHHHHhCCcc
Confidence 21 1 12235689999998888887766543
No 57
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=87.43 E-value=1.8 Score=30.18 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC-CCChhHhhhCCEEEEeccc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~ii~gsP~ 69 (192)
||...|+++.+...+ .|+++++-.=... ... ..+.++|..||+||+++-+
T Consensus 16 HTyMAAeaLe~~A~~-~g~~IKVETqGs~---------------G~eN~LT~edI~~Ad~VI~AaD~ 66 (122)
T COG1445 16 HTYMAAEALEKAAKK-LGVEIKVETQGAV---------------GIENRLTAEDIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEcCCcc---------------cccCcCCHHHHHhCCEEEEEecc
Confidence 688888888888888 5988776321110 011 1247999999999999754
No 58
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=85.99 E-value=2 Score=38.23 Aligned_cols=110 Identities=18% Similarity=0.081 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhh-CCEEEEeccccCCCchHHHH
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAE-ADGFVFGFPTRFGMMAAQFK 79 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aD~ii~gsP~y~g~~~~~~k 79 (192)
.+||-+.+|+.+++.+.. .|..+.+.++.+..+ .++.+ =..+++.|....|.+|..+.
T Consensus 57 qtG~a~~~A~~~a~~~~~-~g~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~st~geGe~p~na~ 115 (587)
T COG0369 57 QTGNAEGLAEELAKELEA-AGLQVLVASLDDYKP--------------------KDIAEERLLLFVVSTQGEGEPPDNAV 115 (587)
T ss_pred CCccHHHHHHHHHHHHHh-cCCceeecchhhcCh--------------------hhHHhhhceEEEEccccCCCCCCchH
Confidence 379999999999999988 588888888877532 33332 34566666677899999999
Q ss_pred HHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 80 AFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 80 ~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
.|++.+.... ...|.+-..++++.+..+.......-+.+...+...|-..+.
T Consensus 116 ~f~~~l~~~~-a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~ 167 (587)
T COG0369 116 AFHEFLKGKK-APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLF 167 (587)
T ss_pred HHHHHhcccc-cccccccchhhhcCCccchhhhhccchhhHHHHHhcCccccc
Confidence 9999986431 245677777777776544332223334566667777765543
No 59
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=83.44 E-value=6 Score=26.74 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
+|..|++.+.+.+++ .|.++++.-.++.. ..+.+.++|.+.+| ||++-.++
T Consensus 13 STSlLV~Km~~aA~~-kg~~~~I~A~s~~e-------------------~~~~~~~~DvvLlG---------PQv~y~~~ 63 (102)
T COG1440 13 STSLLVTKMKKAAES-KGKDVTIEAYSETE-------------------LSEYIDNADVVLLG---------PQVRYMLK 63 (102)
T ss_pred cHHHHHHHHHHHHHh-CCCceEEEEechhH-------------------HHHhhhcCCEEEEC---------hHHHHHHH
Confidence 688899999999988 58888887665531 24678899999987 67776666
Q ss_pred hhccccccCCCCCCcEEEEEe--cCCCC
Q 029532 84 ATGGLWRTQQLAGKPAGMFYS--TGSQG 109 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~s--~g~~~ 109 (192)
.+... ..-.|+|+.++-+ ||--.
T Consensus 64 ~~~~~---~~~~giPV~vI~~~dYG~mn 88 (102)
T COG1440 64 QLKEA---AEEKGIPVEVIDMLDYGMMN 88 (102)
T ss_pred HHHHH---hcccCCCeEEeCHHHccCcC
Confidence 66421 1335679988865 55544
No 60
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=81.53 E-value=4.3 Score=30.79 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.3
Q ss_pred hHhhhCCEEEEecc
Q 029532 55 NELAEADGFVFGFP 68 (192)
Q Consensus 55 ~~l~~aD~ii~gsP 68 (192)
.++.++|+||+.-+
T Consensus 34 ~~~~~~d~iii~G~ 47 (200)
T PRK13143 34 EEILDADGIVLPGV 47 (200)
T ss_pred HHHccCCEEEECCC
Confidence 56789999999764
No 61
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=79.68 E-value=16 Score=24.74 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
.|..|++.+.+..++ .|+++++-..+.. .......++|.|+++ |+++..++
T Consensus 15 sTSll~~km~~~~~~-~gi~~~V~A~~~~-------------------~~~~~~~~~DviLl~---------Pqi~~~~~ 65 (106)
T PRK10499 15 STSLLVSKMRAQAEK-YEVPVIIEAFPET-------------------LAGEKGQNADVVLLG---------PQIAYMLP 65 (106)
T ss_pred cHHHHHHHHHHHHHH-CCCCEEEEEeecc-------------------hhhccccCCCEEEEC---------HHHHHHHH
Confidence 366677788888877 5887776443221 012345678977764 67777777
Q ss_pred hhccccccCCCCCCcEEEEEe--cCCCCCChHHHHHHHHHHHHH
Q 029532 84 ATGGLWRTQQLAGKPAGMFYS--TGSQGGGQETTALTAITQLVH 125 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~s--~g~~~g~~~~~l~~~~~~l~~ 125 (192)
.+. ....++|+.++-. ||... .+..+......+..
T Consensus 66 ~i~-----~~~~~~pV~~I~~~~Yg~~d--g~~vl~~a~~~~~~ 102 (106)
T PRK10499 66 EIQ-----RLLPNKPVEVIDSLLYGKVD--GLGVLKAAVAAIKK 102 (106)
T ss_pred HHH-----hhcCCCCEEEEChHhhhcCC--HHHHHHHHHHHHHH
Confidence 764 2334578877764 45542 34445555444443
No 62
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=79.45 E-value=2.2 Score=28.70 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
+|..+++.+.+.+++ .|.++++...+.. ...+.+.++|.|+++ | |++..++
T Consensus 12 SSs~la~km~~~a~~-~gi~~~i~a~~~~-------------------e~~~~~~~~Dvill~-P--------Qv~~~~~ 62 (99)
T cd05565 12 TSGLLANALNKGAKE-RGVPLEAAAGAYG-------------------SHYDMIPDYDLVILA-P--------QMASYYD 62 (99)
T ss_pred CHHHHHHHHHHHHHH-CCCcEEEEEeeHH-------------------HHHHhccCCCEEEEc-C--------hHHHHHH
Confidence 467788999999998 6988877654321 013567889966654 3 4555556
Q ss_pred hhccccccCCCCCCcEEEEE
Q 029532 84 ATGGLWRTQQLAGKPAGMFY 103 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~ 103 (192)
.+... ..-.|+|+.++-
T Consensus 63 ~i~~~---~~~~~ipv~~I~ 79 (99)
T cd05565 63 ELKKD---TDRLGIKLVTTT 79 (99)
T ss_pred HHHHH---hhhcCCCEEEeC
Confidence 65311 122467887775
No 63
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=74.16 E-value=32 Score=27.51 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=58.2
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHH---Hh
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFL---DA 84 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fl---d~ 84 (192)
|...++..+.+ .|.+|.+++..... .+.+...+....++ ..+.+.++|.||+..|.. ..++..+ +.
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~-~~~l~~~g~~~~~s----~~~~~~~advVil~vp~~-----~~~~~v~~g~~~ 75 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDA-VEEAVAAGAQAAAS----PAEAAEGADRVITMLPAG-----QHVISVYSGDEG 75 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHH-HHHHHHcCCeecCC----HHHHHhcCCEEEEeCCCh-----HHHHHHHcCcch
Confidence 55667777766 58899888765321 11111111111111 135678899999999974 2345444 33
Q ss_pred hccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 85 TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
+. ....+|+.+ +-.+ +. ...+.+.+...+...|..+++.+..
T Consensus 76 l~----~~~~~g~~v-id~s--t~---~p~~~~~~~~~~~~~g~~~vdaPv~ 117 (288)
T TIGR01692 76 IL----PKVAKGSLL-IDCS--TI---DPDSARKLAELAAAHGAVFMDAPVS 117 (288)
T ss_pred Hh----hcCCCCCEE-EECC--CC---CHHHHHHHHHHHHHcCCcEEECCCC
Confidence 32 111234433 2222 11 2334556777788889998886543
No 64
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=73.21 E-value=13 Score=24.10 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 69 (192)
+|...++.+.+.+++ .|+++.+--=...-. ......+++.+||.||+..-+
T Consensus 12 ht~lAae~L~~aA~~-~G~~i~VE~qg~~g~--------------~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 12 HTFMAAEALEKAAKK-RGWEVKVETQGSVGA--------------QNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEecCCcCc--------------cCCCCHHHHHhCCEEEEeccC
Confidence 566677888888877 588766422111000 001235899999999998654
No 65
>PRK11538 ribosome-associated protein; Provisional
Probab=72.97 E-value=9.9 Score=25.87 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHh
Q 029532 5 VEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 5 T~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~ 84 (192)
++.+++.+.+.+.+..+-++.++|+.+. -.-+|.+|++|-.- ..+++...+.
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~------------------------~~~~Dy~VIatg~S----~rh~~aia~~ 54 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGK------------------------SSITDCMIICTGTS----SRHVMSIADH 54 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEeCC----HHHHHHHHHH
Confidence 5678888999988755779999999863 12468999998554 3455554444
Q ss_pred h
Q 029532 85 T 85 (192)
Q Consensus 85 ~ 85 (192)
+
T Consensus 55 v 55 (105)
T PRK11538 55 V 55 (105)
T ss_pred H
Confidence 4
No 66
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=71.31 E-value=15 Score=27.47 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.5
Q ss_pred HHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEE-Eeccc
Q 029532 12 IKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFV-FGFPT 69 (192)
Q Consensus 12 i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii-~gsP~ 69 (192)
+.+.+++ .|+++++++..+. ..+++.++|+|| .|.|-
T Consensus 17 i~~~l~~-~g~~~~v~~~~~~--------------------~~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 17 LVDLIRK-LGVPMQVVNVEDL--------------------DLDEVENFSHILISPGPD 54 (190)
T ss_pred HHHHHHH-cCCcEEEEECCcc--------------------ChhHhccCCEEEECCCCC
Confidence 4455555 4888888886542 136678899999 55774
No 67
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=69.37 E-value=30 Score=28.49 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k~ 80 (192)
+|++-..|.++++.+++ .|++++++++....|-+. +...+.+..++.||+.-=-+ .|++.+++..
T Consensus 209 ~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pld~-------------~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~ 274 (327)
T PRK09212 209 FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPLDT-------------ETIIESVKKTNRLVVVEEGWPFAGVGAEIAA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCCCH-------------HHHHHHHHhCCeEEEEcCCCCCCCHHHHHHH
Confidence 68899999999999987 699999999887643110 01246677888888665444 5888888888
Q ss_pred HHHhh
Q 029532 81 FLDAT 85 (192)
Q Consensus 81 fld~~ 85 (192)
++-.-
T Consensus 275 ~l~~~ 279 (327)
T PRK09212 275 LIMKE 279 (327)
T ss_pred HHHHh
Confidence 88663
No 68
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.00 E-value=58 Score=26.32 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
+...++..+.+ .|.+|.+++-.... ...+.+.++|.||+..|. ..+..+++.+
T Consensus 15 ~G~~lA~~l~~-~G~~V~~~~r~~~~------------------~~~~~~~~advvi~~vp~------~~~~~v~~~l 67 (308)
T PRK14619 15 WGSTLAGLASA-NGHRVRVWSRRSGL------------------SLAAVLADADVIVSAVSM------KGVRPVAEQV 67 (308)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCCCC------------------CHHHHHhcCCEEEEECCh------HHHHHHHHHH
Confidence 56677777777 58899988754321 013557799999999995 2455555665
No 69
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=67.87 E-value=6.9 Score=28.26 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=27.5
Q ss_pred HHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEe
Q 029532 10 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG 66 (192)
Q Consensus 10 ~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g 66 (192)
+.+.+.+++ .|++++.+++.+....+ ..+.|.+||+|+|+
T Consensus 3 ~~~~~~f~~-~g~~v~~l~~~~~~~~~----------------~~~~i~~ad~I~~~ 42 (154)
T PF03575_consen 3 EKFRKAFRK-LGFEVDQLDLSDRNDAD----------------ILEAIREADAIFLG 42 (154)
T ss_dssp HHHHHHHHH-CT-EEEECCCTSCGHHH----------------HHHHHHHSSEEEE-
T ss_pred HHHHHHHHH-CCCEEEEEeccCCChHH----------------HHHHHHhCCEEEEC
Confidence 566677777 59998888877642221 24889999999996
No 70
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=66.45 E-value=27 Score=27.02 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=39.5
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEE-eccccCCCch-HHHHHHHHhh
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTRFGMMA-AQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-gsP~y~g~~~-~~~k~fld~~ 85 (192)
|-..++..|++ .|.+|++-.+.+.. .. ...+.|.++|.||+ +... ++.++ .+.+.|.+++
T Consensus 24 ~~~~~~~~L~~-~gf~V~~~~~~d~~--~~--------------~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V 85 (215)
T cd03142 24 MHGTIAAALAE-YGFDVQTATLDEPE--HG--------------LTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRV 85 (215)
T ss_pred HHHHHHHHHHh-cCcEEEEEeccCcc--cc--------------CCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHH
Confidence 44566677777 58888866555421 00 12467999999998 4443 45555 4788888887
Q ss_pred c
Q 029532 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 86 ~ 86 (215)
T cd03142 86 L 86 (215)
T ss_pred H
Confidence 4
No 71
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=65.70 E-value=72 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=26.5
Q ss_pred hhHhhhCCEEEEeccccCCCc-hHHHHHHHHhhc
Q 029532 54 PNELAEADGFVFGFPTRFGMM-AAQFKAFLDATG 86 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~-~~~~k~fld~~~ 86 (192)
.+.+.++|.+|+-+|- |.+ +...|+|++.+.
T Consensus 136 ~EAvk~aei~I~ftPf--G~~t~~Iikki~~~ip 167 (342)
T PRK00961 136 REAVADADIVITWLPK--GGMQPDIIEKFADDIK 167 (342)
T ss_pred HHHhcCCCEEEEecCC--CCCchHHHHHHHhhCC
Confidence 6889999999999994 664 788999999983
No 72
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=65.70 E-value=67 Score=25.99 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCC-CHHHhcccCCCCCCCCCC-CChhHhhh---CCEEEEeccccCCCchH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPI-ITPNELAE---ADGFVFGFPTRFGMMAA 76 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~---aD~ii~gsP~y~g~~~~ 76 (192)
+|-|.+++..+.+.+.. .|.+ .+..+..-- ..++ .+.+- ....++-+ -|..|+..|- .
T Consensus 12 ~g~~~~~~~~~~~~~~~-~g~~-~v~~V~p~~~~~~v---------~G~~~y~sv~dlp~~~~~Dlavi~vpa------~ 74 (286)
T TIGR01019 12 QGITGSQGSFHTEQMLA-YGTN-IVGGVTPGKGGTTV---------LGLPVFDSVKEAVEETGANASVIFVPA------P 74 (286)
T ss_pred ecCCcHHHHHHHHHHHh-CCCC-EEEEECCCCCccee---------cCeeccCCHHHHhhccCCCEEEEecCH------H
Confidence 57788888888888876 5766 444444310 0000 01110 13466666 4999999994 3
Q ss_pred HHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 77 QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 77 ~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
.+...++.+. . +|-+.+++.+.|.. +...+.+....+.+|+.++|+..
T Consensus 75 ~v~~~l~e~~------~-~Gvk~avIis~Gf~----e~~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 75 FAADAIFEAI------D-AGIELIVCITEGIP----VHDMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred HHHHHHHHHH------H-CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEEECCCC
Confidence 4444555543 1 45456666666542 22235677788899999998744
No 73
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=65.05 E-value=72 Score=25.68 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=55.6
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh-hh---CCEEEEeccccCCCchHHHHHHHH
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AE---ADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~---aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
|...++..+.+ .|.++.+++.... ..+.+...+....+ ..+++ .+ +|.||+..|.. ..++..++
T Consensus 11 mG~~mA~~L~~-~g~~v~v~dr~~~-~~~~~~~~g~~~~~-----s~~~~~~~~~~advVi~~vp~~-----~~~~~v~~ 78 (299)
T PRK12490 11 MGGNMAERLRE-DGHEVVGYDVNQE-AVDVAGKLGITARH-----SLEELVSKLEAPRTIWVMVPAG-----EVTESVIK 78 (299)
T ss_pred HHHHHHHHHHh-CCCEEEEEECCHH-HHHHHHHCCCeecC-----CHHHHHHhCCCCCEEEEEecCc-----hHHHHHHH
Confidence 55666676766 4888888875431 11111111111111 23443 33 69999999965 35566555
Q ss_pred hhccccccCCC-CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 84 ATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 84 ~~~~~~~~~~l-~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
.+. ..+ +|+ +.+-++...+ .....+...+...|..++..++.
T Consensus 79 ~i~-----~~l~~g~-ivid~st~~~-----~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 79 DLY-----PLLSPGD-IVVDGGNSRY-----KDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred HHh-----ccCCCCC-EEEECCCCCc-----hhHHHHHHHHHHcCCeEEeCCCC
Confidence 553 123 343 3233332221 23345677778889888876554
No 74
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=64.87 E-value=26 Score=27.74 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=38.5
Q ss_pred hHh-hhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCC-CCh----HHHHHHHHHHHHHcCC
Q 029532 55 NEL-AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG-GGQ----ETTALTAITQLVHHGM 128 (192)
Q Consensus 55 ~~l-~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~-g~~----~~~l~~~~~~l~~~g~ 128 (192)
..| .++|.+|++.|.-- ++..-+..||..- .+|-++.++....... .+. ......|...|..+|+
T Consensus 192 ~~IP~~~d~Lvi~~P~~~--ls~~e~~~l~~yl-------~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi 262 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTD--LSEEELYALDQYL-------MNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGI 262 (271)
T ss_pred cccCCCCCEEEEECCCCC--CCHHHHHHHHHHH-------HcCCeEEEEECCcccccccccccccccccCHHHHHHHcCC
Confidence 556 89999999999863 3344444455541 2444444444432110 000 0012357777889999
Q ss_pred EEec
Q 029532 129 IFVP 132 (192)
Q Consensus 129 ~vv~ 132 (192)
.+-.
T Consensus 263 ~~~~ 266 (271)
T PF09822_consen 263 RINP 266 (271)
T ss_pred EeCC
Confidence 8754
No 75
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=64.72 E-value=23 Score=26.62 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecc
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 68 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 68 (192)
.||+..+++.+. + .|+++++++. .+++.++|+||+.-|
T Consensus 8 ~~~~~~~~~~l~----~-~g~~v~v~~~------------------------~~~l~~~d~iiipG~ 45 (198)
T cd01748 8 MGNLRSVANALE----R-LGAEVIITSD------------------------PEEILSADKLILPGV 45 (198)
T ss_pred CChHHHHHHHHH----H-CCCeEEEEcC------------------------hHHhccCCEEEECCC
Confidence 467776665554 3 4788888762 145778999999765
No 76
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=64.58 E-value=8.5 Score=25.55 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
.|..+++.+.+.+++ .|.++++...+-. . ..+...++|.|+ .+| +++..++
T Consensus 11 sTS~~~~ki~~~~~~-~~~~~~v~~~~~~---~----------------~~~~~~~~Diil-~~P--------qv~~~~~ 61 (96)
T cd05564 11 STSILVKKMKKAAEK-RGIDAEIEAVPES---E----------------LEEYIDDADVVL-LGP--------QVRYMLD 61 (96)
T ss_pred hHHHHHHHHHHHHHH-CCCceEEEEecHH---H----------------HHHhcCCCCEEE-ECh--------hHHHHHH
Confidence 355788999999988 5887666543310 0 124567788554 444 4555555
Q ss_pred hhccccccCCCCCCcEEEEEe
Q 029532 84 ATGGLWRTQQLAGKPAGMFYS 104 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~s 104 (192)
++... ....++|+.++-.
T Consensus 62 ~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 62 EVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred HHHHH---hccCCCcEEEcCh
Confidence 55310 1235778877754
No 77
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.53 E-value=6.1 Score=28.64 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCCHHHhcccCC----CCCCCCCC------CChhHhhhCCEEEEeccccCCCchHHH
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSA----PPKSDVPI------ITPNELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~----~~~~~~~~------~~~~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
..+++.-+.+ .|.+|.++.-++. ..+.+...+. .+.-.++. ...+.+.++|.||+++|.+ .+
T Consensus 11 G~AlA~~la~-~g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~------~~ 82 (157)
T PF01210_consen 11 GTALAALLAD-NGHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ------AH 82 (157)
T ss_dssp HHHHHHHHHH-CTEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG------GH
T ss_pred HHHHHHHHHH-cCCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH------HH
Confidence 3455555656 5888998875431 1112211111 01100111 1135689999999999997 35
Q ss_pred HHHHHhhc
Q 029532 79 KAFLDATG 86 (192)
Q Consensus 79 k~fld~~~ 86 (192)
+.+++++.
T Consensus 83 ~~~~~~l~ 90 (157)
T PF01210_consen 83 REVLEQLA 90 (157)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77778875
No 78
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=64.28 E-value=25 Score=23.26 Aligned_cols=52 Identities=25% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 70 (192)
+|..+++.+.+.+++ .|+++.+---...-. ......+++.+||.||+.+-+-
T Consensus 13 ~s~laa~~L~~aa~~-~g~~~~ve~~~~~g~--------------~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 13 HTYMAAEALEKAAKK-LGWEIKVETQGSLGI--------------ENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEEecCcCc--------------cCcCCHHHHhhCCEEEEecCCC
Confidence 456677888888888 598766542221100 0011248899999999987653
No 79
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=64.20 E-value=7.8 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhccccCCceeEEEEcC
Q 029532 5 VEKLAEEIKKGASSVEGVEAKLWQVP 30 (192)
Q Consensus 5 T~~la~~i~~~l~~~~g~ev~~~~l~ 30 (192)
|..+++.+.+.+++ .|.++++...+
T Consensus 16 SS~l~~k~~~~~~~-~gi~~~v~a~~ 40 (95)
T TIGR00853 16 TSLLVNKMNKAAEE-YGVPVKIAAGS 40 (95)
T ss_pred HHHHHHHHHHHHHH-CCCcEEEEEec
Confidence 55688999999988 68887765543
No 80
>PRK06545 prephenate dehydrogenase; Validated
Probab=64.05 E-value=46 Score=27.65 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=40.4
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
|...++..+.+ .|.++.+++.... .............++......+.+.++|.||+++|.. .+..++..+.
T Consensus 11 iG~siA~~L~~-~G~~v~i~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~------~~~~vl~~l~ 81 (359)
T PRK06545 11 IGGSLALAIKA-AGPDVFIIGYDPS-AAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD------ATAALLAELA 81 (359)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCC-HHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH------HHHHHHHHHh
Confidence 56677888877 5888888876542 1211111111111111111134578999999999985 4556666653
No 81
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=63.72 E-value=12 Score=24.69 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.8
Q ss_pred HHHH-HHHHHHhccccCCceeEEEEc
Q 029532 5 VEKL-AEEIKKGASSVEGVEAKLWQV 29 (192)
Q Consensus 5 T~~l-a~~i~~~l~~~~g~ev~~~~l 29 (192)
|..| +..+.+.+++ .|+++++...
T Consensus 15 TS~m~~~ki~~~l~~-~gi~~~v~~~ 39 (94)
T PRK10310 15 TSTMAAEEIKELCQS-HNIPVELIQC 39 (94)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 4444 7899999988 6888777663
No 82
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=63.63 E-value=23 Score=27.74 Aligned_cols=77 Identities=23% Similarity=0.203 Sum_probs=46.7
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.-+....+.+++ .|.++..+.+-+..+.... + .....+.++|.|||.||. -++.|++++.
T Consensus 11 ~~~~~~~~~l~~-~G~~~~~~P~i~~~~~~~l-----------~-~~l~~l~~~d~vvfTS~~-------av~~~~~~l~ 70 (248)
T COG1587 11 EQAEELAALLRK-AGAEPLELPLIEIEPLPDL-----------E-VALEDLDSADWVVFTSPN-------AVRFFFEALK 70 (248)
T ss_pred hhhHHHHHHHHh-CCCcceeecceeeecchhH-----------H-HHHhccccCCEEEEECHH-------HHHHHHHHHH
Confidence 345667777777 5887666655443220000 0 124666779999999985 6788888875
Q ss_pred cccccCCCCCCcEEEEEe
Q 029532 87 GLWRTQQLAGKPAGMFYS 104 (192)
Q Consensus 87 ~~~~~~~l~gK~~~~~~s 104 (192)
..... .+.++++++++.
T Consensus 71 ~~~~~-~~~~~~i~aVG~ 87 (248)
T COG1587 71 EQGLD-ALKNKKIAAVGE 87 (248)
T ss_pred hhccc-ccccCeEEEEcH
Confidence 32211 355777777754
No 83
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=63.29 E-value=13 Score=24.92 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchH
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAA 76 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~ 76 (192)
|++.+++.+.+..|.++.++|+.+. -.-+|.+|++|..-.-++-+
T Consensus 1 ~~~~i~~~l~~~k~~dI~v~dv~~~------------------------~~~~dy~II~T~~S~rh~~a 45 (100)
T PF02410_consen 1 MLEEIVEALEDKKAEDIVVLDVREK------------------------SSWADYFIIATGRSERHVRA 45 (100)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEGCTT------------------------BSS-SEEEEEEESSHHHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCC------------------------CcccCEEEEEEcCCHHHHHH
Confidence 4567777776645779999999862 14679999998765433333
No 84
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=63.00 E-value=73 Score=25.41 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=55.5
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhcc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~ 87 (192)
|...++..+.+ .|.+|.+++.... ..+.....+..... ...+.+.++|.||+..|. +..++..+..-..
T Consensus 10 mG~~iA~~l~~-~G~~V~~~dr~~~-~~~~~~~~g~~~~~----~~~~~~~~aDivi~~vp~-----~~~~~~v~~~~~~ 78 (291)
T TIGR01505 10 MGSPMSINLAK-AGYQLHVTTIGPE-VADELLAAGAVTAE----TARQVTEQADVIFTMVPD-----SPQVEEVAFGENG 78 (291)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHH-HHHHHHHCCCcccC----CHHHHHhcCCEEEEecCC-----HHHHHHHHcCcch
Confidence 55666666766 5888888876532 11111111111111 113568899999999996 3455555411000
Q ss_pred ccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 88 LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+. ....+|+. +...+.. ...+...+...+...|+.++..++
T Consensus 79 ~~-~~~~~g~i---ivd~st~---~~~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 79 II-EGAKPGKT---LVDMSSI---SPIESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred Hh-hcCCCCCE---EEECCCC---CHHHHHHHHHHHHHcCCCEEecCC
Confidence 00 01122332 2222211 123334577777778888887544
No 85
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=60.36 E-value=23 Score=25.39 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.9
Q ss_pred hhHhhhCCEEEEecccc
Q 029532 54 PNELAEADGFVFGFPTR 70 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y 70 (192)
.+.+.+||.||.+++.-
T Consensus 66 ~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 66 QSKVHDADVVVVGSPKP 82 (140)
T ss_pred HHHHhhCCEEEEecCCC
Confidence 46799999999999876
No 86
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=60.18 E-value=17 Score=23.22 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccC
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRF 71 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~ 71 (192)
++..+++.+.+.+++ .|++++....... .......++|.|+++..+=+
T Consensus 12 TS~~~~~~i~~~~~~-~gi~~~~~~~~~~-------------------~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 12 TSLMVANKIKKALKE-LGIEVEVSAGSIL-------------------EVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp HHHHHHHHHHHHHHH-TTECEEEEEEETT-------------------THHHHHTT-SEEEEEESSGG
T ss_pred HHHHHHHHHHHHHHh-ccCceEEEEeccc-------------------ccccccCCCcEEEEcCccch
Confidence 344444999999998 5888777665421 01244556999988776644
No 87
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=60.17 E-value=66 Score=25.89 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhh----hCCEEEEeccccCCCchHHHHHHHH
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA----EADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
|...++..+.+ .|.++.+++..+.... .....+....+ ..+++. ++|.||+..|.. ..++..++
T Consensus 11 MG~~mA~~L~~-~g~~v~v~dr~~~~~~-~~~~~g~~~~~-----~~~e~~~~~~~~dvvi~~v~~~-----~~~~~v~~ 78 (301)
T PRK09599 11 MGGNMARRLLR-GGHEVVGYDRNPEAVE-ALAEEGATGAD-----SLEELVAKLPAPRVVWLMVPAG-----EITDATID 78 (301)
T ss_pred HHHHHHHHHHH-CCCeEEEEECCHHHHH-HHHHCCCeecC-----CHHHHHhhcCCCCEEEEEecCC-----cHHHHHHH
Confidence 55666777766 4889988876542111 11111111111 233433 369999999862 24444445
Q ss_pred hhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 84 ATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 84 ~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
.+. ..++...+.+-++.++ . .....+...+...|..+++.++.
T Consensus 79 ~l~-----~~l~~g~ivid~st~~----~-~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 79 ELA-----PLLSPGDIVIDGGNSY----Y-KDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred HHH-----hhCCCCCEEEeCCCCC----h-hHHHHHHHHHHHcCCEEEeCCCC
Confidence 442 1233223322222222 1 22335667788899999876553
No 88
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=59.73 E-value=91 Score=25.09 Aligned_cols=110 Identities=12% Similarity=0.165 Sum_probs=54.8
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|.+++.... ..+.+...+.....+..+ ..+.+..+|.||+..|.- .+...++.+.
T Consensus 10 ~mG~~la~~L~~-~g~~V~~~dr~~~-~~~~l~~~g~~~~~s~~~-~~~~~~~~dvIi~~vp~~------~~~~v~~~l~ 80 (298)
T TIGR00872 10 RMGANIVRRLAK-RGHDCVGYDHDQD-AVKAMKEDRTTGVANLRE-LSQRLSAPRVVWVMVPHG------IVDAVLEELA 80 (298)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHH-HHHHHHHcCCcccCCHHH-HHhhcCCCCEEEEEcCch------HHHHHHHHHH
Confidence 355667777766 5889988876532 111111111111111000 112345689999999873 4555555553
Q ss_pred cccccCCC-CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 87 GLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 87 ~~~~~~~l-~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
+ .+ +|+.+ ..++... ... ...+...+...|..+++.+..
T Consensus 81 ~-----~l~~g~iv---id~st~~--~~~-t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 81 P-----TLEKGDIV---IDGGNSY--YKD-SLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred h-----hCCCCCEE---EECCCCC--ccc-HHHHHHHHHhcCCeEEecCCC
Confidence 1 23 34432 2222211 111 123455667889888876543
No 89
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.49 E-value=21 Score=25.93 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHh--
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDA-- 84 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~-- 84 (192)
.|...++..|.+ .|.++..+|............ +....+ ...+-+.++|.||+..|-- ..++..++.
T Consensus 11 ~mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~-g~~~~~----s~~e~~~~~dvvi~~v~~~-----~~v~~v~~~~~ 79 (163)
T PF03446_consen 11 NMGSAMARNLAK-AGYEVTVYDRSPEKAEALAEA-GAEVAD----SPAEAAEQADVVILCVPDD-----DAVEAVLFGEN 79 (163)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHT-TEEEES----SHHHHHHHBSEEEE-SSSH-----HHHHHHHHCTT
T ss_pred HHHHHHHHHHHh-cCCeEEeeccchhhhhhhHHh-hhhhhh----hhhhHhhcccceEeecccc-----hhhhhhhhhhH
Confidence 355666777766 599999999653211111111 100000 1135677889999988763 567888777
Q ss_pred hccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 85 TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
+. ....+|+.+.-.+|. .....+.+.+.+...|..++..++.
T Consensus 80 i~----~~l~~g~iiid~sT~------~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 80 IL----AGLRPGKIIIDMSTI------SPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp HG----GGS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred Hh----hccccceEEEecCCc------chhhhhhhhhhhhhccceeeeeeee
Confidence 42 122345555433332 2344567888888999999986653
No 90
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=59.33 E-value=33 Score=23.69 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC-CCChhHhhhCCEEEEeccccCCCchHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fl 82 (192)
+|...++.+.+.+++ .|+++.+-- .... ... ....+++..||.||+....-. +
T Consensus 17 ht~lAAeaL~kAA~~-~G~~i~VE~-qg~~--------------g~~~~lt~~~i~~Ad~VIia~d~~~---~------- 70 (114)
T PRK10427 17 HTYMAAERLEKLCQL-EKWGVKIET-QGAL--------------GTENRLTDEDIRRADVVLLITDIEL---A------- 70 (114)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEe-cCCc--------------CcCCCCCHHHHHhCCEEEEEecCCC---C-------
Confidence 566677888888877 588766422 1110 000 123589999999999965522 0
Q ss_pred HhhccccccCCCCCCcEEEEEe
Q 029532 83 DATGGLWRTQQLAGKPAGMFYS 104 (192)
Q Consensus 83 d~~~~~~~~~~l~gK~~~~~~s 104 (192)
| ..+|.||++.....
T Consensus 71 ~-------~~rF~gk~v~~~s~ 85 (114)
T PRK10427 71 G-------AERFEHCRYVQCSI 85 (114)
T ss_pred c-------hhhhCCCeEEEecH
Confidence 0 13678998865544
No 91
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=59.23 E-value=50 Score=25.09 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
...+.+.+.+++..+++|++.+=.+. ...+.|.++|+||+-+-.-.---+.+.+.|.+.+.
T Consensus 19 ~~~~~l~~ll~~~~~~~v~~~~~~~~-------------------~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 19 AAKKALAQLLEESEGFEVTVTEDPDD-------------------LTPENLKGYDVVVFYNTGGDELTDEQRAALRDYVE 79 (217)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSGGC-------------------TSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEEEeCccc-------------------CChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 45556666666225777765432111 12467999999999876510124467777777763
Q ss_pred cccccCCCCCCcEEEE
Q 029532 87 GLWRTQQLAGKPAGMF 102 (192)
Q Consensus 87 ~~~~~~~l~gK~~~~~ 102 (192)
+|+.+..+
T Consensus 80 --------~Ggglv~l 87 (217)
T PF06283_consen 80 --------NGGGLVGL 87 (217)
T ss_dssp --------TT-EEEEE
T ss_pred --------cCCCEEEE
Confidence 66665444
No 92
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=57.02 E-value=45 Score=25.20 Aligned_cols=57 Identities=26% Similarity=0.318 Sum_probs=34.2
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCC---HHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLP---EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
...+.+.+++ .|.++..+.+.+..+ .... .....+..+|.|||.||. .++.|++.+
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~iiftS~~-------av~~~~~~~ 68 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLDDAELD-------------AALADLDEYDWLIFTSPN-------AVEAFFEAL 68 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCChHHHH-------------HHHHhcCCCCEEEEECHH-------HHHHHHHHH
Confidence 4556677777 588877766554321 0010 013566689999999994 456666555
Q ss_pred c
Q 029532 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 69 ~ 69 (239)
T cd06578 69 E 69 (239)
T ss_pred H
Confidence 3
No 93
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=56.64 E-value=99 Score=24.65 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=52.8
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH---h
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD---A 84 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld---~ 84 (192)
|...++..+.+ .|.+|..++..... .+.+...+....++ ..+.+.++|.||+..|.. ..++..+. .
T Consensus 13 mG~~~a~~l~~-~g~~v~~~d~~~~~-~~~~~~~g~~~~~~----~~e~~~~~d~vi~~vp~~-----~~~~~v~~~~~~ 81 (296)
T PRK11559 13 MGKPMSKNLLK-AGYSLVVYDRNPEA-VAEVIAAGAETAST----AKAVAEQCDVIITMLPNS-----PHVKEVALGENG 81 (296)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHH-HHHHHHCCCeecCC----HHHHHhcCCEEEEeCCCH-----HHHHHHHcCcch
Confidence 44555555655 48888887754321 11111111101111 124568899999999973 34454442 1
Q ss_pred hccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 85 TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+. ....+|+.+ ...+.. ...+...+...+...|+.++..++
T Consensus 82 ~~----~~~~~g~ii---id~st~---~~~~~~~l~~~~~~~g~~~~d~pv 122 (296)
T PRK11559 82 II----EGAKPGTVV---IDMSSI---APLASREIAAALKAKGIEMLDAPV 122 (296)
T ss_pred Hh----hcCCCCcEE---EECCCC---CHHHHHHHHHHHHHcCCcEEEcCC
Confidence 21 111233333 222221 123445677777777888776554
No 94
>PRK09065 glutamine amidotransferase; Provisional
Probab=55.89 E-value=46 Score=25.95 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=31.5
Q ss_pred HHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEe-ccccCC-Cch--HHHHHHHHhh
Q 029532 10 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFG-MMA--AQFKAFLDAT 85 (192)
Q Consensus 10 ~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sP~y~g-~~~--~~~k~fld~~ 85 (192)
+.+...+.. .|++++++++.... ...++.++|+||++ +|.... ..| ..++.||..+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~~~~~~-------------------~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 25 HWIRVALGL-AEQPVVVVRVFAGE-------------------PLPAPDDFAGVIITGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred HHHHHHhcc-CCceEEEEeccCCC-------------------CCCChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHH
Confidence 344445555 47788888876521 12456788988876 664322 222 3345666554
No 95
>PRK08250 glutamine amidotransferase; Provisional
Probab=54.16 E-value=51 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=22.8
Q ss_pred HhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEE-ecccc
Q 029532 14 KGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTR 70 (192)
Q Consensus 14 ~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-gsP~y 70 (192)
.-+++ .|++++++++....+ ...++.++|+||+ |+|-.
T Consensus 19 ~~~~~-~g~~~~~~~~~~g~~------------------~p~~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 19 KWAEN-RGYDISYSRVYAGEA------------------LPENADGFDLLIVMGGPQS 57 (235)
T ss_pred HHHHH-CCCeEEEEEccCCCC------------------CCCCccccCEEEECCCCCC
Confidence 33444 477888877553110 1235678999877 77754
No 96
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=53.12 E-value=29 Score=26.58 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.+.+.+.+++ .|+++..+.+-+..+.+ .+.+......+..+|.|||.||. .++.|++.+.
T Consensus 13 ~~~l~~~l~~-~G~~v~~~p~~~~~~~~----------~~~~~~~~~~~~~~d~iiftS~~-------av~~~~~~~~ 72 (249)
T PRK05928 13 AEELVELLRE-LGFVALHFPLIEIEPGR----------QLPQLAAQLAALGADWVIFTSKN-------AVEFLLSALK 72 (249)
T ss_pred HHHHHHHHHH-cCCCEEEeccEEEecCC----------CcChHHHHhhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 4556677777 58777665544321100 00000113678899999999975 5566666653
No 97
>PRK07053 glutamine amidotransferase; Provisional
Probab=53.04 E-value=28 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEE-ecccc
Q 029532 12 IKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPTR 70 (192)
Q Consensus 12 i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-gsP~y 70 (192)
+.+.+++ .|.++++++..+.. . ...++.++|+||+ |+|.-
T Consensus 19 i~~~L~~-~g~~~~v~~~~~~~---------------~---~~~~~~~~d~lii~Ggp~~ 59 (234)
T PRK07053 19 FEQVLGA-RGYRVRYVDVGVDD---------------L---ETLDALEPDLLVVLGGPIG 59 (234)
T ss_pred HHHHHHH-CCCeEEEEecCCCc---------------c---CCCCccCCCEEEECCCCCC
Confidence 4555556 48888888764310 1 0245667898877 77754
No 98
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=52.64 E-value=86 Score=25.84 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k~ 80 (192)
+|++-..|.++++.|++ .|++++++|+....|-+. +...+.+.....||+.---+ .|++...+-.
T Consensus 209 ~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPlD~-------------~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~ 274 (327)
T CHL00144 209 YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPLDL-------------GTISKSVKKTHKVLIVEECMKTGGIGAELIA 274 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCCCH-------------HHHHHHHHhhCcEEEEECCCCCCCHHHHHHH
Confidence 68888889899999988 699999999987533100 01235566676777665444 5777777777
Q ss_pred HHHh
Q 029532 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 275 ~l~e 278 (327)
T CHL00144 275 QINE 278 (327)
T ss_pred HHHH
Confidence 6644
No 99
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=52.22 E-value=26 Score=28.19 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=41.6
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCC-ChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII-TPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
.|...++..+++ .|..+.++........ ...+..-...++.... ....+.++|.||+++|+. ..-.+++++
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~~~-~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~------~~~~~l~~l 84 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSAAT-LKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE------ATEEVLKEL 84 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcHHH-HHHHhhcCcccccccchhhhhcccCCEEEEeccHH------HHHHHHHHh
Confidence 466788888988 5888888886653210 1000000111111111 147788899999999985 444555555
Q ss_pred c
Q 029532 86 G 86 (192)
Q Consensus 86 ~ 86 (192)
.
T Consensus 85 ~ 85 (279)
T COG0287 85 A 85 (279)
T ss_pred c
Confidence 3
No 100
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=51.67 E-value=34 Score=26.98 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=31.8
Q ss_pred EEEEeccccC--CCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcC
Q 029532 62 GFVFGFPTRF--GMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHG 127 (192)
Q Consensus 62 ~ii~gsP~y~--g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g 127 (192)
+||+|+..|. +.+++.++.=||.-..++ -.||...++.|+|...... ..-..|++.|..+|
T Consensus 48 ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LY----k~gk~~~ilvSGg~~~~~~-~Ea~~M~~yLi~~G 110 (239)
T PRK10834 48 GVVLGTAKYYRTGVINQYYRYRIQGAINAY----NSGKVNYLLLSGDNALQSY-NEPMTMRKDLIAAG 110 (239)
T ss_pred EEEcCCcccCCCCCcCHHHHHHHHHHHHHH----HhCCCCEEEEeCCCCCCCC-CHHHHHHHHHHHcC
Confidence 6778988774 556666665555543332 2455555666765432211 11223555554444
No 101
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=51.47 E-value=22 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.8
Q ss_pred cccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCC
Q 029532 68 PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 107 (192)
Q Consensus 68 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~ 107 (192)
|.+.......++.|+++-. .+.|+++.+++|+|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 5666777778999999974 567788878877664
No 102
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=51.29 E-value=37 Score=25.54 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecc
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 68 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 68 (192)
.||...+++.+.. .|+++++++- .+++.++|+||+.-|
T Consensus 8 ~gn~~~l~~~l~~-----~g~~v~v~~~------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 8 VGNLGSVKRALKR-----VGAEPVVVKD------------------------SKEAELADKLILPGV 45 (196)
T ss_pred CcHHHHHHHHHHH-----CCCcEEEEcC------------------------HHHhccCCEEEECCC
Confidence 4777777766653 3778887761 146778999999764
No 103
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=50.34 E-value=1.2e+02 Score=26.51 Aligned_cols=83 Identities=17% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~f 81 (192)
+|..++.|+.+.+.+.+ ....+.++++. +.+ .++-+--.+++..|-|-+..| +.-|
T Consensus 57 ~GtA~~~A~~~~e~~~s-ld~~~~llnl~-y~~--------------------~d~pen~~~~lv~~~~~~~~~--~d~~ 112 (601)
T KOG1160|consen 57 TGTAKKAAKSVHEKLKS-LDELPKLLNLD-YSD--------------------FDVPENALYFLVLPSYDIDPP--LDYF 112 (601)
T ss_pred cchHHHHHHHHHHHHHh-cccchhhcCCC-CCc--------------------cCCCcceEEEEEecccCCCCc--HHHH
Confidence 57788889999888877 34455666655 221 122334467778888877776 3444
Q ss_pred HHhhc---ccc--ccCCCCCCcEEEEEecCCC
Q 029532 82 LDATG---GLW--RTQQLAGKPAGMFYSTGSQ 108 (192)
Q Consensus 82 ld~~~---~~~--~~~~l~gK~~~~~~s~g~~ 108 (192)
+..+. .-+ ....|+|-+.++|+.+...
T Consensus 113 ~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~ 144 (601)
T KOG1160|consen 113 LQWLEESANDFRVGSFPLRGLVYAVFGLGDSE 144 (601)
T ss_pred HHHHHhhhhccccCCccccCceEEEEeccchh
Confidence 44442 111 1235778888899876443
No 104
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=50.25 E-value=41 Score=23.62 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=36.8
Q ss_pred ccCCCchHHHHHHHHhhccc----ccc----CCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 69 TRFGMMAAQFKAFLDATGGL----WRT----QQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 69 ~y~g~~~~~~k~fld~~~~~----~~~----~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
+++.+++|..+.|++++... ... ..+ +.++.++ |+.|..|.....+..+.+.+..+-.-|++.+
T Consensus 1 IvY~S~TGNte~fv~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n~~~gV~gSG 72 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHNLLRGVAASG 72 (125)
T ss_pred CEEEcccccHHHHHHHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhhcEEEEEEcC
Confidence 35788999999999887521 101 123 5777777 8877655444444444444444334444443
No 105
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=50.10 E-value=1.1e+02 Score=25.55 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCC--HHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQF 78 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~ 78 (192)
+|++-..|..+++.|++ .|++++++|+....| .+. ..+.+...+.||+.-=-+ .|++...+
T Consensus 236 ~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPlD~~~---------------l~~~~~~t~~vvtvEE~~~~GGlGs~V 299 (356)
T PLN02683 236 FSKMVGYALKAAEILAK-EGISAEVINLRSIRPLDRDT---------------INASVRKTNRLVTVEEGWPQHGVGAEI 299 (356)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCccCHHH---------------HHHHHhhcCeEEEEeCCCcCCCHHHHH
Confidence 67888888888888887 699999999987533 111 235666777776664443 57777777
Q ss_pred HHHHHh
Q 029532 79 KAFLDA 84 (192)
Q Consensus 79 k~fld~ 84 (192)
..++-.
T Consensus 300 a~~l~e 305 (356)
T PLN02683 300 CASVVE 305 (356)
T ss_pred HHHHHH
Confidence 777654
No 106
>PRK08818 prephenate dehydrogenase; Provisional
Probab=49.84 E-value=32 Score=28.93 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
|-..++..+++..+.+|.-+|..+.. .....+.+.++|.||+++|+. .+..++..+
T Consensus 16 iGgslA~alk~~~~~~V~g~D~~d~~----------------~~~~~~~v~~aDlVilavPv~------~~~~~l~~l 71 (370)
T PRK08818 16 YGRWLARFLRTRMQLEVIGHDPADPG----------------SLDPATLLQRADVLIFSAPIR------HTAALIEEY 71 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCccc----------------cCCHHHHhcCCCEEEEeCCHH------HHHHHHHHH
Confidence 44556666654125666666643210 001135688999999999984 445555554
No 107
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=49.35 E-value=91 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEE-eccc
Q 029532 12 IKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF-GFPT 69 (192)
Q Consensus 12 i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-gsP~ 69 (192)
+.+.+++ .|+++++++..... ....++.++|+||+ |.|-
T Consensus 14 ~~~~l~~-~G~~~~~~~~~~~~------------------~~~~~~~~~dgvil~gG~~ 53 (184)
T cd01743 14 LVQYLRE-LGAEVVVVRNDEIT------------------LEELELLNPDAIVISPGPG 53 (184)
T ss_pred HHHHHHH-cCCceEEEeCCCCC------------------HHHHhhcCCCEEEECCCCC
Confidence 3444455 48899988875421 01235688999887 5663
No 108
>PRK06490 glutamine amidotransferase; Provisional
Probab=46.70 E-value=62 Score=25.32 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=9.9
Q ss_pred hHhhhCCEEEE-eccc
Q 029532 55 NELAEADGFVF-GFPT 69 (192)
Q Consensus 55 ~~l~~aD~ii~-gsP~ 69 (192)
+++.++|+||+ |+|-
T Consensus 48 ~~l~~~dgvii~Ggp~ 63 (239)
T PRK06490 48 DTLEDHAGAVIFGGPM 63 (239)
T ss_pred CcccccCEEEEECCCC
Confidence 46778897655 4664
No 109
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.99 E-value=1.1e+02 Score=21.81 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhcccc
Q 029532 10 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLW 89 (192)
Q Consensus 10 ~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~ 89 (192)
+.+...+++ .|.+ ++++....+.+.+ .+...+.|.=+++-....++--..|+.+++++.
T Consensus 19 ~iv~~~l~~-~Gfe--Vi~LG~~v~~e~~---------------v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~--- 77 (134)
T TIGR01501 19 KILDHAFTN-AGFN--VVNLGVLSPQEEF---------------IKAAIETKADAILVSSLYGHGEIDCKGLRQKCD--- 77 (134)
T ss_pred HHHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEecccccCHHHHHHHHHHHH---
Confidence 344555666 5755 6677654443322 366667677666666666777778999999986
Q ss_pred ccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCE
Q 029532 90 RTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMI 129 (192)
Q Consensus 90 ~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~ 129 (192)
...+.+++ +..+|...-. +....+.+..|+..|+.
T Consensus 78 -~~gl~~~~---vivGG~~vi~-~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 78 -EAGLEGIL---LYVGGNLVVG-KQDFPDVEKRFKEMGFD 112 (134)
T ss_pred -HCCCCCCE---EEecCCcCcC-hhhhHHHHHHHHHcCCC
Confidence 23455543 2233321111 11122344556777754
No 110
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=45.71 E-value=1.6e+02 Score=23.85 Aligned_cols=107 Identities=16% Similarity=0.025 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCC-CHHHhcccCCCCCCCCCCCChhHhhh---CCEEEEeccccCCCchHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAE---ADGFVFGFPTRFGMMAAQ 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---aD~ii~gsP~y~g~~~~~ 77 (192)
+|-|.++...+.+.+.+ .|.. .++-+.... ..++. ... -++ ...++-+ -|..|+..|- ..
T Consensus 14 ~~~~~~~g~~~l~~l~~-~g~~-~v~pVnp~~~~~~v~-G~~-----~y~--sv~dlp~~~~~DlAvi~vp~------~~ 77 (291)
T PRK05678 14 QGITGKQGTFHTEQMLA-YGTN-IVGGVTPGKGGTTVL-GLP-----VFN--TVAEAVEATGANASVIYVPP------PF 77 (291)
T ss_pred eCCCchHHHHHHHHHHH-CCCC-EEEEECCCCCCCeEe-Cee-----ccC--CHHHHhhccCCCEEEEEcCH------HH
Confidence 35566777777777766 4665 555444320 00010 000 011 2466666 5999999993 34
Q ss_pred HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 78 FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 78 ~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+...++.+. . +|-+.+++.+.|.. .+ ....+....+.+||.++|+..
T Consensus 78 v~~~l~e~~------~-~gvk~avI~s~Gf~---~~-~~~~l~~~a~~~girvlGPNc 124 (291)
T PRK05678 78 AADAILEAI------D-AGIDLIVCITEGIP---VL-DMLEVKAYLERKKTRLIGPNC 124 (291)
T ss_pred HHHHHHHHH------H-CCCCEEEEECCCCC---HH-HHHHHHHHHHHcCCEEECCCC
Confidence 444444542 1 44456566665542 11 123677778899999999754
No 111
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=45.34 E-value=43 Score=24.76 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=17.6
Q ss_pred hhHhhhCCEEEEeccccCCCchHH
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQ 77 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~ 77 (192)
.+.+.+||.||.+|+.=. -+...
T Consensus 82 ~~~l~~aDiVIsat~~~~-ii~~~ 104 (168)
T cd01080 82 KEHTKQADIVIVAVGKPG-LVKGD 104 (168)
T ss_pred HHHHhhCCEEEEcCCCCc-eecHH
Confidence 478999999999998854 34443
No 112
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=45.27 E-value=72 Score=23.50 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEe-ccccCCCchHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFGMMAAQFKAFL 82 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sP~y~g~~~~~~k~fl 82 (192)
+|..+.+ .+++ .|++++++++.... . . ..+++.++|+||+. +|..-.. ....+.++
T Consensus 9 ~~~~l~~----~l~~-~~~~~~v~~~~~~~-~-~---------------~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i 65 (192)
T PF00117_consen 9 FTHSLVR----ALRE-LGIDVEVVRVDSDF-E-E---------------PLEDLDDYDGIIISGGPGSPYD-IEGLIELI 65 (192)
T ss_dssp THHHHHH----HHHH-TTEEEEEEETTGGH-H-H---------------HHHHTTTSSEEEEECESSSTTS-HHHHHHHH
T ss_pred HHHHHHH----HHHH-CCCeEEEEECCCch-h-h---------------hhhhhcCCCEEEECCcCCcccc-cccccccc
Confidence 4554444 4444 47889999876410 0 0 01257889998876 5555555 55666667
Q ss_pred Hhhc
Q 029532 83 DATG 86 (192)
Q Consensus 83 d~~~ 86 (192)
.++.
T Consensus 66 ~~~~ 69 (192)
T PF00117_consen 66 REAR 69 (192)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6653
No 113
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=44.91 E-value=61 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=23.9
Q ss_pred ChhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEe
Q 029532 53 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYS 104 (192)
Q Consensus 53 ~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s 104 (192)
..+++..||.||+..-+-- +. ..+|.||++.-...
T Consensus 32 t~~~i~~Ad~VIia~d~~i-----------~~------~~rf~gk~v~~~s~ 66 (88)
T PRK10474 32 TAEDVASADMVILTKDIGI-----------KF------EERFAGKTIVRVNI 66 (88)
T ss_pred CHHHHHhCCEEEEEecCCC-----------cc------hhccCCCceEEecH
Confidence 3689999999999854422 01 13678898865554
No 114
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=43.68 E-value=2.2e+02 Score=24.79 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=74.4
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCC----CCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHH
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP----PKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fl 82 (192)
.|...++..+.+ .|.+|.+++................ ..++ +....+.+..+|.||+..|.. ..+...+
T Consensus 9 ~MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s-~~e~v~~l~~~dvIil~v~~~-----~~v~~Vi 81 (467)
T TIGR00873 9 VMGSNLALNMAD-HGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYS-IEEFVQSLERPRKIMLMVKAG-----APVDAVI 81 (467)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHhhccCCCCceecCC-HHHHHhhcCCCCEEEEECCCc-----HHHHHHH
Confidence 366677777777 5999999986542111111110000 0011 100122334689999987763 4556666
Q ss_pred HhhccccccCCC-CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecCC
Q 029532 83 DATGGLWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGD 161 (192)
Q Consensus 83 d~~~~~~~~~~l-~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (192)
+.+.+ .+ +|+.+ .-+|.. ....+. .....+...|+.+++.++.-+. + +...|.+.+.
T Consensus 82 ~~l~~-----~L~~g~iI---ID~gns--~~~~t~-~~~~~l~~~gi~fvdapVsGG~-----~----gA~~G~~im~-- 139 (467)
T TIGR00873 82 NQLLP-----LLEKGDII---IDGGNS--HYPDTE-RRYKELKAKGILFVGSGVSGGE-----E----GARKGPSIMP-- 139 (467)
T ss_pred HHHHh-----hCCCCCEE---EECCCc--CHHHHH-HHHHHHHhcCCEEEcCCCCCCH-----H----HHhcCCcCCC--
Confidence 66542 22 34433 333221 222232 3445677889999987764321 0 1112221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 029532 162 GSRQPTELELEQAFHQGKHIAGI 184 (192)
Q Consensus 162 ~~~~p~~~~~~~~~~lg~~la~~ 184 (192)
.-+++..++++.+-+.++..
T Consensus 140 ---GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 140 ---GGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred ---CCCHHHHHHHHHHHHHHhhh
Confidence 12567888888887777754
No 115
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=43.53 E-value=25 Score=24.15 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCC
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 32 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~ 32 (192)
+|++-..|..+++.|++ .|++++++++.-.
T Consensus 17 ~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 17 YGSMVEEALEAAEELEE-EGIKAGVIDLRTI 46 (124)
T ss_dssp ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred ehHHHHHHHHHHHHHHH-cCCceeEEeeEEE
Confidence 68888899999999998 6999999998754
No 116
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=43.37 E-value=64 Score=24.50 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=45.6
Q ss_pred ChhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCC----Ch-HH-H---HHHHHHHH
Q 029532 53 TPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG----GQ-ET-T---ALTAITQL 123 (192)
Q Consensus 53 ~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g----~~-~~-~---l~~~~~~l 123 (192)
..+.+..+|.|++.+|.....-....++++|.... .|=+-.++++.+.... .. .. . -..+++.+
T Consensus 58 l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~-------agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l 130 (233)
T PF05368_consen 58 LVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA-------AGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYL 130 (233)
T ss_dssp HHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH-------HT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc-------cccceEEEEEecccccccccccccchhhhhhhhhhhhh
Confidence 35789999999999998877777888999999741 2223335666554331 11 11 1 13456667
Q ss_pred HHcCCEEe
Q 029532 124 VHHGMIFV 131 (192)
Q Consensus 124 ~~~g~~vv 131 (192)
+..++...
T Consensus 131 ~~~~i~~t 138 (233)
T PF05368_consen 131 RESGIPYT 138 (233)
T ss_dssp HHCTSEBE
T ss_pred hhccccce
Confidence 76666553
No 117
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=42.90 E-value=1.1e+02 Score=21.91 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=31.2
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 109 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~ 109 (192)
..-+.||++++.-| +..+|+.-+.+.+ +..-.-|.+..+++++-++
T Consensus 45 ~sPRhADiLlVTG~-----vT~~~~e~lkk~Y----ea~PePKiViA~GaCa~~G 90 (148)
T COG3260 45 NSPRHADILLVTGA-----VTRQMREPLKKAY----EAMPEPKIVIAVGACALSG 90 (148)
T ss_pred CCCccccEEEEecc-----ccHHHHHHHHHHH----HhCCCCcEEEEEcccccCC
Confidence 45567888877644 4567777777765 2344678888888886654
No 118
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=41.68 E-value=1.1e+02 Score=20.77 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhcc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~ 87 (192)
+|-.+.+.+++ .|+++..++-.+. ....+...+|.+++-.|.-...-.-.+...++-..
T Consensus 13 ia~r~~ra~r~-~Gi~tv~v~s~~d-------------------~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~- 71 (110)
T PF00289_consen 13 IAVRIIRALRE-LGIETVAVNSNPD-------------------TVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIAR- 71 (110)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEEGGG-------------------TTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHH-
T ss_pred HHHHHHHHHHH-hCCcceeccCchh-------------------cccccccccccceecCcchhhhhhccHHHHhhHhh-
Confidence 35667777888 5998887775432 12468888999887764433222222333333332
Q ss_pred ccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 88 LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
. . ...+++.-+|. -.+. ..|.+.+...|+.++|+.
T Consensus 72 ----~--~-g~~~i~pGyg~---lse~--~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 72 ----K--E-GADAIHPGYGF---LSEN--AEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp ----H--T-TESEEESTSST---TTTH--HHHHHHHHHTT-EESSS-
T ss_pred ----h--h-cCcccccccch---hHHH--HHHHHHHHHCCCEEECcC
Confidence 0 1 23333333222 2222 257777789999998863
No 119
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=41.29 E-value=56 Score=24.60 Aligned_cols=37 Identities=16% Similarity=0.420 Sum_probs=25.6
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEec
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 67 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 67 (192)
=+..+.+.+++ .|.+++++.+.+ .+++.++|+|||.-
T Consensus 15 ~~~~~~~~l~~-~g~~~~~~~~~~----------------------~~~l~~~d~iii~G 51 (200)
T PRK13527 15 HIDALKRALDE-LGIDGEVVEVRR----------------------PGDLPDCDALIIPG 51 (200)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCC----------------------hHHhccCCEEEECC
Confidence 34456666666 478888877653 25677899998874
No 120
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.10 E-value=44 Score=25.17 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEE
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVF 65 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 65 (192)
||...+++++. + .|+++++++ + .+++.++|+||+
T Consensus 11 gn~~s~~~~l~----~-~g~~~~~v~--~----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 11 ANLSSVKFAIE----R-LGYEPVVSR--D----------------------PDVILAADKLFL 44 (196)
T ss_pred chHHHHHHHHH----H-CCCeEEEEC--C----------------------HHHhCCCCEEEE
Confidence 68887777544 3 377777764 2 267788999998
No 121
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=41.01 E-value=1.7e+02 Score=24.50 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEe-ccccCCCchHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFG-FPTRFGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sP~y~g~~~~~~k~ 80 (192)
+|++-..+..+++.+++ .|+++.++++....|-+. +...+.+..++.||+. -....|++...+..
T Consensus 241 ~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pld~-------------e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~ 306 (355)
T PTZ00182 241 YGSQVHVALKAAEELAK-EGISCEVIDLRSLRPWDR-------------ETIVKSVKKTGRCVIVHEAPPTCGIGAEIAA 306 (355)
T ss_pred eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCH-------------HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH
Confidence 68888888888888877 589999999876533100 0013456666666654 23335667666666
Q ss_pred HHHh
Q 029532 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 307 ~l~e 310 (355)
T PTZ00182 307 QIME 310 (355)
T ss_pred HHHH
Confidence 5543
No 122
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=40.88 E-value=49 Score=24.96 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=9.3
Q ss_pred HhhhCCEEEEec
Q 029532 56 ELAEADGFVFGF 67 (192)
Q Consensus 56 ~l~~aD~ii~gs 67 (192)
++.++|+|||.-
T Consensus 37 ~l~~~D~lilPG 48 (198)
T cd03130 37 ELPDADGLYLGG 48 (198)
T ss_pred CCCCCCEEEECC
Confidence 445699999986
No 123
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=40.69 E-value=1.1e+02 Score=20.36 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=32.8
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 107 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~ 107 (192)
++..+||.|||-|-+.-.+--..+...|.++... .-+++++.+-+++..
T Consensus 32 ~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~----~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 32 DDPEEADVIIINTCTVRESAEQKSRNRIRKLKKL----KKPGAKIVVTGCMAQ 80 (98)
T ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHh----cCCCCEEEEEeCccc
Confidence 4457899999999998777666666666666421 114566666666544
No 124
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=40.65 E-value=2.4e+02 Score=24.32 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=55.9
Q ss_pred HHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhh-hCCEEEEeccccCCCchHHHHHHHHh
Q 029532 6 EKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA-EADGFVFGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 6 ~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aD~ii~gsP~y~g~~~~~~k~fld~ 84 (192)
.++...+.+.+.+ .|..-.++.++.... ++. ...+ ++ ..+++. .-|.+|+..|. ..+...++.
T Consensus 20 ~~~g~~~~~~l~~-~gf~g~v~~Vnp~~~-~i~-G~~~-----~~--sl~~lp~~~Dlavi~vp~------~~~~~~l~e 83 (447)
T TIGR02717 20 GKVGYAIMKNLIE-GGYKGKIYPVNPKAG-EIL-GVKA-----YP--SVLEIPDPVDLAVIVVPA------KYVPQVVEE 83 (447)
T ss_pred CchHHHHHHHHHh-CCCCCcEEEECCCCC-ccC-Cccc-----cC--CHHHCCCCCCEEEEecCH------HHHHHHHHH
Confidence 3455666666666 466444555543211 111 0000 11 123332 35999999983 445555555
Q ss_pred hccccccCCCCCCcEEEEEecCCCCCCh--HHHHHHHHHHHHHcCCEEecCCc
Q 029532 85 TGGLWRTQQLAGKPAGMFYSTGSQGGGQ--ETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~s~g~~~g~~--~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+. . .|-+.+++.+.|....+. ....+.+.+..+.+|+.++++..
T Consensus 84 ~~------~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc 129 (447)
T TIGR02717 84 CG------E-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNC 129 (447)
T ss_pred HH------h-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCe
Confidence 53 2 344455555655432221 11235677778899999998743
No 125
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=40.53 E-value=50 Score=22.05 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
++.+++.+.+..+.++.++|+.+. . .-+|.+|++|-. -..+++...+.+
T Consensus 2 ~~~i~~~l~~kka~dI~vldv~~~----------------------~--~~~dy~VI~Tg~----S~rh~~aia~~v 50 (99)
T TIGR00090 2 LELIVEALDDKKAEDIVVLDVRGK----------------------S--SIADYFVIASGT----SSRHVKAIADNV 50 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEECCCC----------------------C--cccCEEEEEEeC----CHHHHHHHHHHH
Confidence 455666665545678999999863 1 356889999854 345555555554
No 126
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=40.41 E-value=2.1e+02 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred hhHhhhCCEEEEeccccCCCc-hHHHHHHHHhhc
Q 029532 54 PNELAEADGFVFGFPTRFGMM-AAQFKAFLDATG 86 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~-~~~~k~fld~~~ 86 (192)
.+.+.++|.+|+-+|- |.. +...|+|++.+.
T Consensus 134 ~EAv~~aei~I~ftPf--G~~q~~Iikkii~~lp 165 (340)
T TIGR01723 134 REAVEDADIIITWLPK--GNKQPDIIKKFIDDIP 165 (340)
T ss_pred HHHhcCCCEEEEEcCC--CCCchHHHHHHHhhCC
Confidence 6889999999999994 664 788999999983
No 127
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.37 E-value=1e+02 Score=20.10 Aligned_cols=42 Identities=17% Similarity=-0.008 Sum_probs=30.4
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
...+..+|.||+-|-.-..++...+|..-.+ .++|+...-+.
T Consensus 43 ~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~~~~ 84 (97)
T PF10087_consen 43 PSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYSRSR 84 (97)
T ss_pred HHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEECCC
Confidence 5789999999999988777777777755544 45777544333
No 128
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=39.51 E-value=1.8e+02 Score=24.05 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 69 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 69 (192)
.+...++..+.+ .|++|.+.+-............+... . ...+.+.++|.|++..|.
T Consensus 27 smG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~G~~~---~--s~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 27 SQGHAHALNLRD-SGVDVVVGLREGSKSWKKAEADGFEV---L--TVAEAAKWADVIMILLPD 83 (330)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHCCCee---C--CHHHHHhcCCEEEEcCCH
Confidence 367788888887 58887765533211111111111100 0 123568889999999994
No 129
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=38.99 E-value=70 Score=28.01 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC-CCChhHhhhCCEEEEe
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFG 66 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~ii~g 66 (192)
+|...++++.+.+++ .|+++++-- .... ... ..+.+++.+||.||+.
T Consensus 18 ht~mAaeaL~~aA~~-~G~~i~VEt-qg~~--------------g~~~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 18 HTYMVAEALEQKARS-LGHTIKVET-QGSS--------------GVENRLSSEEIAAADYVILA 65 (482)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEe-cCCc--------------cCCCCCCHHHHHhCCEEEEe
Confidence 567677888888888 588766522 1110 000 1235899999999999
No 130
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=38.91 E-value=1.6e+02 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcC
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVP 30 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~ 30 (192)
+||..+++.+ ++ .|++++++...
T Consensus 9 ~~~~~l~~~l----~~-~g~~~~~~~~~ 31 (188)
T TIGR00888 9 QYTQLIARRL----RE-LGVYSELVPNT 31 (188)
T ss_pred hHHHHHHHHH----HH-cCCEEEEEeCC
Confidence 5666666665 33 37788887654
No 131
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=38.66 E-value=1e+02 Score=23.69 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=16.3
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 59 EADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 59 ~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
..|+|+|.||. .++.|++.+.
T Consensus 170 ~~d~i~f~S~~-------~~~~f~~~~~ 190 (240)
T PRK09189 170 PFDAVLLYSRV-------AARRFFALMR 190 (240)
T ss_pred CCCEEEEeCHH-------HHHHHHHHHh
Confidence 36999999987 4688887763
No 132
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=37.52 E-value=1.9e+02 Score=22.39 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=26.8
Q ss_pred hccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc
Q 029532 15 GASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 15 ~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 70 (192)
-+.+ .|...+++++.+- ++|. .+++..+|++|+.-.-|
T Consensus 33 llg~-ege~wd~frV~~g---------------efP~--~~Dl~ky~gfvIsGS~~ 70 (245)
T KOG3179|consen 33 LLGD-EGEQWDLFRVIDG---------------EFPQ--EEDLEKYDGFVISGSKH 70 (245)
T ss_pred Hhcc-cCceeEEEEEecC---------------CCCC--hhhhhhhceEEEeCCcc
Confidence 3444 5777888887652 3454 48899999999986666
No 133
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.24 E-value=24 Score=23.53 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=31.7
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 59 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 59 ~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
+.|+++.- ...+-+-.+.+|+++. -.||++.+++..+.. . -.++...|...|+.+-
T Consensus 4 D~dGvl~~----g~~~ipga~e~l~~L~-------~~g~~~~~lTNns~~---s---~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 4 DLDGVLYN----GNEPIPGAVEALDALR-------ERGKPVVFLTNNSSR---S---REEYAKKLKKLGIPVD 59 (101)
T ss_dssp ESTTTSEE----TTEE-TTHHHHHHHHH-------HTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred eCccEeEe----CCCcCcCHHHHHHHHH-------HcCCCEEEEeCCCCC---C---HHHHHHHHHhcCcCCC
Confidence 44555543 2223344588899984 268999877765332 1 1256677788887653
No 134
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=37.13 E-value=2.2e+02 Score=24.85 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k~ 80 (192)
+|+.-..|..+++.|++ .|++++++|+....|-+. +...+.+.....||..-=-| .|++...+..
T Consensus 348 ~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPlD~-------------~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~ 413 (464)
T PRK11892 348 FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPMDT-------------ETIVESVKKTNRLVTVEEGWPQSGVGAEIAA 413 (464)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcCCH-------------HHHHHHHHhcCeEEEEeCCCcCCcHHHHHHH
Confidence 67888888888888887 699999999987533100 01235566677666654333 4677777776
Q ss_pred HHHh
Q 029532 81 FLDA 84 (192)
Q Consensus 81 fld~ 84 (192)
++-.
T Consensus 414 ~l~e 417 (464)
T PRK11892 414 RVME 417 (464)
T ss_pred HHHH
Confidence 6644
No 135
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=37.06 E-value=1.1e+02 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=11.5
Q ss_pred hHhhhCCEEEEecccc
Q 029532 55 NELAEADGFVFGFPTR 70 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y 70 (192)
+++.++|+||+.-|--
T Consensus 35 ~~l~~~d~iIlPG~g~ 50 (210)
T CHL00188 35 SELAQVHALVLPGVGS 50 (210)
T ss_pred HHhhhCCEEEECCCCc
Confidence 5677899999865433
No 136
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=36.50 E-value=2.1e+02 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=20.2
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.+.+.++|.||+++|+- .+..++..+.
T Consensus 40 ~~~~~~~DlvvlavP~~------~~~~~l~~~~ 66 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS------AIEDVLEEIA 66 (258)
T ss_dssp HHHGGCCSEEEE-S-HH------HHHHHHHHHH
T ss_pred HhHhcCCCEEEEcCCHH------HHHHHHHHhh
Confidence 47899999999999984 5777777775
No 137
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.34 E-value=1.1e+02 Score=20.87 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh-hhCCEEEEeccccCCCchHHHHHHHHh
Q 029532 6 EKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFGFPTRFGMMAAQFKAFLDA 84 (192)
Q Consensus 6 ~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~ii~gsP~y~g~~~~~~k~fld~ 84 (192)
.+.+..+.+.+.+ .|.++..++......... .-++ ...++ ...|.+++.+|- ..+-.+++.
T Consensus 13 ~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G~---------~~y~--sl~e~p~~iDlavv~~~~------~~~~~~v~~ 74 (116)
T PF13380_consen 13 GKFGYRVLRNLKA-AGYEVYPVNPKGGEILGI---------KCYP--SLAEIPEPIDLAVVCVPP------DKVPEIVDE 74 (116)
T ss_dssp TSHHHHHHHHHHH-TT-EEEEESTTCSEETTE---------E-BS--SGGGCSST-SEEEE-S-H------HHHHHHHHH
T ss_pred CChHHHHHHHHHh-CCCEEEEECCCceEECcE---------Eeec--cccCCCCCCCEEEEEcCH------HHHHHHHHH
Confidence 3456677777777 587766665543210000 0011 12333 678999998874 556666666
Q ss_pred hccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 85 TGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 85 ~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+. . .|-+..+|.++ ...+ ++.+.++.+|+.++++..
T Consensus 75 ~~------~-~g~~~v~~~~g----~~~~----~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 75 AA------A-LGVKAVWLQPG----AESE----ELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HH------H-HT-SEEEE-TT----S--H----HHHHHHHHTT-EEEESS-
T ss_pred HH------H-cCCCEEEEEcc----hHHH----HHHHHHHHcCCEEEeCCc
Confidence 64 1 23445455443 1222 567777889999997643
No 138
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=36.27 E-value=2.3e+02 Score=22.76 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=57.8
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhcc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~ 87 (192)
|...++..+.+ .|.+|.+++........... .+..... ...+.+.++|.||+..|.. ..++..+.....
T Consensus 12 mG~~mA~~l~~-~G~~V~v~d~~~~~~~~~~~-~g~~~~~----s~~~~~~~aDvVi~~vp~~-----~~~~~vl~~~~~ 80 (296)
T PRK15461 12 MGSPMASNLLK-QGHQLQVFDVNPQAVDALVD-KGATPAA----SPAQAAAGAEFVITMLPNG-----DLVRSVLFGENG 80 (296)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHH-cCCcccC----CHHHHHhcCCEEEEecCCH-----HHHHHHHcCccc
Confidence 45566666666 48888888765421111111 1110001 1135678999999999975 234444432211
Q ss_pred ccccCCC-CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCcc
Q 029532 88 LWRTQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYT 136 (192)
Q Consensus 88 ~~~~~~l-~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 136 (192)
+. ..+ +|+.+ +-++.+ ...+...+...+...|+.+++.+..
T Consensus 81 i~--~~l~~g~lv-id~sT~-----~p~~~~~l~~~l~~~g~~~ldapV~ 122 (296)
T PRK15461 81 VC--EGLSRDALV-IDMSTI-----HPLQTDKLIADMQAKGFSMMDVPVG 122 (296)
T ss_pred Hh--hcCCCCCEE-EECCCC-----CHHHHHHHHHHHHHcCCcEEEccCC
Confidence 11 112 34433 222221 2334557888888899988876553
No 139
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.80 E-value=65 Score=23.25 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC--CCChhHhhhCCEEEEeccccCCCchHHHHH
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP--IITPNELAEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
|-|-.+...+.+.|.+ .|++|..+-=... ..+. ...-....-|.. +...+.+..+|+||...+..... ...++.
T Consensus 5 GatG~vG~~l~~~L~~-~~~~V~~~~R~~~-~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~-~~~~~~ 80 (183)
T PF13460_consen 5 GATGFVGRALAKQLLR-RGHEVTALVRSPS-KAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKD-VDAAKN 80 (183)
T ss_dssp TTTSHHHHHHHHHHHH-TTSEEEEEESSGG-GHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTH-HHHHHH
T ss_pred CCCChHHHHHHHHHHH-CCCEEEEEecCch-hccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhccc-cccccc
Confidence 4445567777777777 4777776543221 1111 000001112221 12356788999999999887765 566788
Q ss_pred HHHhhccccccCCCCCCcEEEEEecC
Q 029532 81 FLDATGGLWRTQQLAGKPAGMFYSTG 106 (192)
Q Consensus 81 fld~~~~~~~~~~l~gK~~~~~~s~g 106 (192)
+++.+. .-.-|++.++++.+
T Consensus 81 ~~~a~~------~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 81 IIEAAK------KAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHH------HTTSSEEEEEEETT
T ss_pred cccccc------ccccccceeeeccc
Confidence 888874 11234555555554
No 140
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=34.83 E-value=78 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccc
Q 029532 12 IKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 69 (192)
Q Consensus 12 i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 69 (192)
+...++. .|+++++++..+ ++.++|+|||+-..
T Consensus 15 l~~~~~~-~G~~~~~~~~~~------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 15 LDPLARE-PGVDVRYVEVPE------------------------GLGDADLIILPGSK 47 (194)
T ss_pred HHHHHhc-CCceEEEEeCCC------------------------CCCCCCEEEECCCc
Confidence 3344444 488888887542 26688999987654
No 141
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=34.70 E-value=2.2e+02 Score=22.12 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=45.1
Q ss_pred Cce--eEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHH-HHHHhhccccccCCCCCC
Q 029532 21 GVE--AKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK-AFLDATGGLWRTQQLAGK 97 (192)
Q Consensus 21 g~e--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k-~fld~~~~~~~~~~l~gK 97 (192)
..+ +.++++.+..+. .+ |.|+...+++.++|.+|.- ++.+.+- ...+.+. . +|-
T Consensus 21 ~~~~~v~~~~~p~~l~e-fI---------d~pee~Lp~i~~~Dl~I~y------~lHPDl~~~l~~~~~------e-~g~ 77 (217)
T PF02593_consen 21 DFCRSVIVYEIPEDLPE-FI---------DDPEEYLPKIPEADLLIAY------GLHPDLTYELPEIAK------E-AGV 77 (217)
T ss_pred CCCceEEEEeCCccccc-cc---------cChHHHccCCCCCCEEEEe------ccCchhHHHHHHHHH------H-cCC
Confidence 445 777777764221 11 1222223559999998852 2222322 3333331 2 444
Q ss_pred cEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 98 PAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 98 ~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
++.++.+ |.+. .....++.+.+...|+.++-+-
T Consensus 78 kavIvp~--~~~~--~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 78 KAVIVPS--ESPK--PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred CEEEEec--CCCc--cchHHHHHHHHHhcCceeecCc
Confidence 5544433 3332 1223478888999998887543
No 142
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.49 E-value=2.7e+02 Score=23.54 Aligned_cols=115 Identities=16% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhh---hCCEEEEeccccCCCchHH-
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELA---EADGFVFGFPTRFGMMAAQ- 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~aD~ii~gsP~y~g~~~~~- 77 (192)
.|..++|.+.|.+..+. . +.+++-+-..-..+.+ .||+... ..++. +...|.+-||-|.++...-
T Consensus 68 fGg~~~L~~~i~~~~~~-~--~P~~i~v~~tC~~~~i-------GdDi~~v-~~~~~~~~~~~vi~v~t~gf~g~~~~G~ 136 (410)
T cd01968 68 FGGEKKLYKAILEIIER-Y--HPKAVFVYSTCVVALI-------GDDIDAV-CKTASEKFGIPVIPVHSPGFVGNKNLGN 136 (410)
T ss_pred eccHHHHHHHHHHHHHh-C--CCCEEEEECCCchhhh-------ccCHHHH-HHHHHHhhCCCEEEEECCCcccChhHHH
Confidence 46678888888888765 2 2333333221111111 2333211 12222 5778888899998874433
Q ss_pred ---HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 78 ---FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 78 ---~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
++.+++.+...-....-..+.+-+++...+. +. +..+...|...|+.++.
T Consensus 137 ~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d----~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 137 KLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GE----LWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-cc----HHHHHHHHHHcCCeEEE
Confidence 4445554431100011124667777765443 22 33678888899998864
No 143
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=34.46 E-value=3.1e+02 Score=23.76 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh-------hhCCEEEEeccccCCCc
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-------AEADGFVFGFPTRFGMM 74 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~aD~ii~gsP~y~g~~ 74 (192)
.|..++|.+.|.+..+.. . .+++-+-..-..+.+ -||+.-. ..++ .....|.+-||-|.|+.
T Consensus 74 fGg~~~L~~aI~~~~~~~-~--P~~I~V~ttC~~eiI-------GDDi~~v-~~~~~~~~p~~~~~pvi~v~tpgF~g~~ 142 (455)
T PRK14476 74 LGGDENVEEAILNICKKA-K--PKIIGLCTTGLTETR-------GDDVAGA-LKEIRARHPELADTPIVYVSTPDFKGAL 142 (455)
T ss_pred eCCHHHHHHHHHHHHHhh-C--CCEEEEeCcchHhhh-------hccHHHH-HHHHHhhccccCCCeEEEecCCCCCCcH
Confidence 477788888888877542 2 233332221011111 1332211 1222 24578889999998776
Q ss_pred hH----HHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 75 AA----QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 75 ~~----~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
.. .++.+++.+...+....-..+.+-+++-+....+. +.++...|...|+.++
T Consensus 143 ~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D----~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 143 EDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGD----IEELREIIEAFGLEPI 199 (455)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCccc----HHHHHHHHHHcCCceE
Confidence 53 44555555432110112244556666432111223 3478888899999985
No 144
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.94 E-value=1.2e+02 Score=22.32 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCC-CCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 93 QLAGKPAGMFYSTGS-QGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 93 ~l~gK~~~~~~s~g~-~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
.++||++.++-++.. ....+-..|+.|.+.+...|+.|++.+.
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 578999988866422 1122446688888888999999998654
No 145
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=33.90 E-value=69 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecC
Q 029532 79 KAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 79 k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
..|++.+.+......|.||+++++..-+.. ......+...+...|-.+.+.
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g~ 116 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTGR 116 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEEE
Confidence 445555443333578999999999874332 234557888899999998764
No 146
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=33.30 E-value=94 Score=27.82 Aligned_cols=51 Identities=27% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPT 69 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 69 (192)
||...++.+.+.+++ .|+++++--=...-. . ...+.+++.+||.||+.+-+
T Consensus 118 ht~mAAeaL~~aA~~-~G~~i~VEtqg~~g~-----------~---n~lt~~~i~~Ad~VIia~d~ 168 (563)
T PRK10712 118 HTFMAAEAIETEAKK-RGWWVKVETRGSVGA-----------G---NAITPEEVAAADLVIVAADI 168 (563)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEecCCccc-----------C---CCCCHHHHHhCCEEEEecCC
Confidence 677777888888888 588766522111000 0 01236899999999999655
No 147
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.27 E-value=91 Score=23.47 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=11.2
Q ss_pred hHhhhCCEEEEecc
Q 029532 55 NELAEADGFVFGFP 68 (192)
Q Consensus 55 ~~l~~aD~ii~gsP 68 (192)
+++.++|+||+.-|
T Consensus 33 ~~l~~~d~iiipG~ 46 (205)
T PRK13141 33 EEILAADGVILPGV 46 (205)
T ss_pred HHhccCCEEEECCC
Confidence 67789999999653
No 148
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=32.68 E-value=80 Score=21.33 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQV 29 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l 29 (192)
.|..+++.+.+.+++ .|.++++...
T Consensus 13 STSlla~k~k~~~~e-~gi~~~i~a~ 37 (104)
T PRK09590 13 SSSMMAKKTTEYLKE-QGKDIEVDAI 37 (104)
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEe
Confidence 455788999888888 5887776443
No 149
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.57 E-value=60 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 70 (192)
|...++..+.+ .|.+|.+++..+.. ...+.+.++|.||+++|+.
T Consensus 110 mG~slA~~l~~-~G~~V~~~d~~~~~------------------~~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 110 LGRLFAKMLTL-SGYQVRILEQDDWD------------------RAEDILADAGMVIVSVPIH 153 (374)
T ss_pred hhHHHHHHHHH-CCCeEEEeCCCcch------------------hHHHHHhcCCEEEEeCcHH
Confidence 44566666766 47777777754310 0124577999999999986
No 150
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=32.55 E-value=69 Score=23.24 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=25.8
Q ss_pred hhCCEEEEecc-ccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 58 AEADGFVFGFP-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 58 ~~aD~ii~gsP-~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
.++|.|++... .+.....+.++.||.+.. -++|+++.++++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 100 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICGA 100 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEEChH
Confidence 68998776543 332334466888888763 256777666553
No 151
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.44 E-value=90 Score=23.50 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=9.5
Q ss_pred hHhhhCCEEEE
Q 029532 55 NELAEADGFVF 65 (192)
Q Consensus 55 ~~l~~aD~ii~ 65 (192)
+++..+|+|||
T Consensus 33 ~~l~~~d~lil 43 (201)
T PRK13152 33 KDLQKADKLLL 43 (201)
T ss_pred HHHcCCCEEEE
Confidence 56788999999
No 152
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=32.20 E-value=3.2e+02 Score=23.25 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=47.7
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHhhccc------------c------ccCCC-CCC-cEEEEEecCCCCC--ChHHH
Q 029532 58 AEADGFVFGFPTRFGMMAAQFKAFLDATGGL------------W------RTQQL-AGK-PAGMFYSTGSQGG--GQETT 115 (192)
Q Consensus 58 ~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~------------~------~~~~l-~gK-~~~~~~s~g~~~g--~~~~~ 115 (192)
..=|+|++-||+| +++.+++....+- | .+..+ .++ +..++++=-.+.| +.+..
T Consensus 105 ~~gd~Vvi~tPvY-----~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ee 179 (388)
T COG1168 105 KPGDGVVIQTPVY-----PPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEE 179 (388)
T ss_pred cCCCeeEecCCCc-----hHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHH
Confidence 4569999999999 5677777665311 1 01122 233 5556665333322 34566
Q ss_pred HHHHHHHHHHcCCEEecCCccC
Q 029532 116 ALTAITQLVHHGMIFVPIGYTF 137 (192)
Q Consensus 116 l~~~~~~l~~~g~~vv~~~~~~ 137 (192)
|..+.+.+..+|..||..-+..
T Consensus 180 L~~i~elc~kh~v~VISDEIHa 201 (388)
T COG1168 180 LRKIAELCLRHGVRVISDEIHA 201 (388)
T ss_pred HHHHHHHHHHcCCEEEeecccc
Confidence 8889999999999999875543
No 153
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=31.63 E-value=1.3e+02 Score=23.36 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEec-ccc
Q 029532 12 IKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF-PTR 70 (192)
Q Consensus 12 i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs-P~y 70 (192)
+...+++ .|++++++.+.+... ...++.++|+|||.- +.|
T Consensus 15 ~~~al~~-aG~~v~~v~~~~~~~------------------~~~~l~~~d~liipGG~~~ 55 (238)
T cd01740 15 MAYAFEL-AGFEAEDVWHNDLLA------------------GRKDLDDYDGVVLPGGFSY 55 (238)
T ss_pred HHHHHHH-cCCCEEEEeccCCcc------------------ccCCHhhCCEEEECCCCCc
Confidence 4445555 488888887654200 124578999998864 444
No 154
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=31.22 E-value=1e+02 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhccccCCc--eeEEEEcC
Q 029532 3 GHVEKLAEEIKKGASSVEGV--EAKLWQVP 30 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~--ev~~~~l~ 30 (192)
|++..+...+.+.+++ .|+ +++...+.
T Consensus 13 gSS~~ik~kve~~l~~-~gi~~~~~~~~v~ 41 (93)
T COG3414 13 GSSTMIKMKVEEVLKE-LGIDVDVEQCAVD 41 (93)
T ss_pred cHHHHHHHHHHHHHHH-cCCCceeeeEEec
Confidence 5677788889999988 577 44444443
No 155
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=31.05 E-value=2.1e+02 Score=22.67 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=36.9
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
|...++..+.+ .|.+|..++..... .+.....+.. +... ...+.+.++|.||+++|.. .+..+++.+
T Consensus 11 mG~sla~~L~~-~g~~V~~~d~~~~~-~~~a~~~g~~--~~~~-~~~~~~~~aDlVilavp~~------~~~~~~~~l 77 (279)
T PRK07417 11 IGGSLGLDLRS-LGHTVYGVSRREST-CERAIERGLV--DEAS-TDLSLLKDCDLVILALPIG------LLLPPSEQL 77 (279)
T ss_pred HHHHHHHHHHH-CCCEEEEEECCHHH-HHHHHHCCCc--cccc-CCHhHhcCCCEEEEcCCHH------HHHHHHHHH
Confidence 55667777777 48888888854321 1111111100 0010 1134578999999999953 344455555
No 156
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=30.91 E-value=1.3e+02 Score=23.17 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=9.1
Q ss_pred hhhCCEEEEecc
Q 029532 57 LAEADGFVFGFP 68 (192)
Q Consensus 57 l~~aD~ii~gsP 68 (192)
+.++|+|||.--
T Consensus 38 l~~~d~lilpGG 49 (227)
T TIGR01737 38 LPDYDGVVLPGG 49 (227)
T ss_pred CCCCCEEEECCC
Confidence 567999888753
No 157
>PRK05670 anthranilate synthase component II; Provisional
Probab=30.79 E-value=2e+02 Score=21.25 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.9
Q ss_pred HHHHhccccCCceeEEEEcC
Q 029532 11 EIKKGASSVEGVEAKLWQVP 30 (192)
Q Consensus 11 ~i~~~l~~~~g~ev~~~~l~ 30 (192)
.+.+.+++ .|++++++...
T Consensus 14 ~i~~~l~~-~g~~~~v~~~~ 32 (189)
T PRK05670 14 NLVQYLGE-LGAEVVVYRND 32 (189)
T ss_pred HHHHHHHH-CCCcEEEEECC
Confidence 34444555 48888888764
No 158
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=30.72 E-value=2.8e+02 Score=22.23 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=58.3
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhcc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATGG 87 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~ 87 (192)
|...++..+.+ .|.++.+++.... .+.....+....+ ...+.+.++|.||+..|.. ..++..+..-..
T Consensus 11 MG~~ma~~L~~-~G~~v~v~~~~~~--~~~~~~~g~~~~~----s~~~~~~~advVi~~v~~~-----~~v~~v~~~~~g 78 (292)
T PRK15059 11 MGTPMAINLAR-AGHQLHVTTIGPV--ADELLSLGAVSVE----TARQVTEASDIIFIMVPDT-----PQVEEVLFGENG 78 (292)
T ss_pred HHHHHHHHHHH-CCCeEEEEeCCHh--HHHHHHcCCeecC----CHHHHHhcCCEEEEeCCCh-----HHHHHHHcCCcc
Confidence 55667777766 5888888876531 1111111110000 1124467899999999964 455554422111
Q ss_pred ccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCc
Q 029532 88 LWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 88 ~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
+. ....+||.+.-.+| . ...+.+.+...+...|..+++.++
T Consensus 79 ~~-~~~~~g~ivvd~sT---~---~p~~~~~~~~~~~~~G~~~vdaPV 119 (292)
T PRK15059 79 CT-KASLKGKTIVDMSS---I---SPIETKRFARQVNELGGDYLDAPV 119 (292)
T ss_pred hh-ccCCCCCEEEECCC---C---CHHHHHHHHHHHHHcCCCEEEecC
Confidence 10 12234554432222 1 234456788888889998887654
No 159
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=30.64 E-value=1.8e+02 Score=20.13 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
++..+++.+.+.+.+..+.++..+|+.+. -.-+|-+|++|-.-.- +++...|
T Consensus 2 ~~~~l~~~i~~alddkKAeDIv~lDv~~~------------------------s~~tDyfVIatg~s~r----hv~Aiad 53 (115)
T COG0799 2 SMEELLEVIVEALDDKKAEDIVVLDVSGK------------------------SSLTDYFVIATGNSSR----HVKAIAD 53 (115)
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEccCC------------------------cccccEEEEEEeCchH----HHHHHHH
Confidence 35678888888887755668999998863 1246888888865444 4455555
Q ss_pred hh
Q 029532 84 AT 85 (192)
Q Consensus 84 ~~ 85 (192)
.+
T Consensus 54 ~i 55 (115)
T COG0799 54 NV 55 (115)
T ss_pred HH
Confidence 54
No 160
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.52 E-value=3.4e+02 Score=23.08 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=38.9
Q ss_pred hCCEEEEeccccCCCchHH----HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 59 EADGFVFGFPTRFGMMAAQ----FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 59 ~aD~ii~gsP~y~g~~~~~----~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
....|.+-||-|.++...- ++.+++.+... ...-..+.+-+++.+-...+ .+..+...|...|+.++.
T Consensus 116 ~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~--~~~~~~~~VNlig~~~~~~~----d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 116 DFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKP--SEVKKNGKVNLLPGFPLTPG----DVREIKRILEAFGLEPII 187 (428)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcc--cCCCCCCeEEEECCCCCCcc----CHHHHHHHHHHcCCCEEE
Confidence 5667888899998765433 44444444210 01123455666654322221 234788888999998875
No 161
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=30.37 E-value=96 Score=23.47 Aligned_cols=46 Identities=17% Similarity=0.043 Sum_probs=30.0
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 109 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~ 109 (192)
..-+.||.+++. |.++-.|+..+.+++ +..-+-|.+..+++|...+
T Consensus 69 ~sPR~ADvllVt-----G~VT~~m~~~l~~~y----eqmp~pk~VIAvGsCA~~G 114 (186)
T PRK14814 69 FSPRQADMILVL-----GTITYKMAPVLRQIY----DQMAEPKFVISVGACASSG 114 (186)
T ss_pred CCcccceEEEEe-----ccCchhhHHHHHHHH----HhcCCCCeEEEeccccccC
Confidence 455788888875 445566777777765 2233557788888876554
No 162
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=30.08 E-value=1.5e+02 Score=20.80 Aligned_cols=63 Identities=24% Similarity=0.225 Sum_probs=31.4
Q ss_pred EEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCC
Q 029532 62 GFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM 128 (192)
Q Consensus 62 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~ 128 (192)
+||+|.+.+....++.++.=++.-..++. .++.--++.|+|...+.....-..+.+.+...|.
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv 65 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGV 65 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCC
Confidence 58899999977666444444444322221 2333334555554332111122345666666664
No 163
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=29.88 E-value=3.1e+02 Score=22.44 Aligned_cols=58 Identities=7% Similarity=-0.052 Sum_probs=31.3
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 70 (192)
.|+.+++.++.+ .|.++.+..-............+... . ...+.+.++|.|++..|.+
T Consensus 13 ~mG~AiA~~L~~-sG~~Viv~~~~~~~~~~~a~~~Gv~~----~-s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 13 SQGHAQALNLRD-SGLNVIVGLRKGGASWKKATEDGFKV----G-TVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred HHHHHHHHHHHH-CCCeEEEEECcChhhHHHHHHCCCEE----C-CHHHHHhcCCEEEEeCCcH
Confidence 377888899887 58765443322211111111111000 0 1135578999999999954
No 164
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=29.39 E-value=3.6e+02 Score=23.01 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 94 LAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 94 l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
++|+++++++.+.-..|........+...+...|+.+.
T Consensus 185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~ 222 (395)
T PRK07200 185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 222 (395)
T ss_pred cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEE
Confidence 67778877765431111111223344444556677654
No 165
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.31 E-value=1.3e+02 Score=27.45 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCC--CChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
+..+++.+++ .|.++..+.+-+..+. ++... ....++.++|.|||.||. -++.|++.+.
T Consensus 15 a~~la~~L~~-~G~~vi~~Pli~i~p~-----------~~~~~l~~~l~~L~~yd~iIFTS~n-------AV~~~~~~l~ 75 (656)
T PRK06975 15 SAALAAQLAA-AGLDVLDFPLLDIAPV-----------ADDAPLRAALARLSDYALVVFVSPN-------AVDRALARLD 75 (656)
T ss_pred HHHHHHHHHH-cCCCEEEcccEEeeCC-----------CChHHHHHHHHhCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 4455666666 4877766544332110 00000 013567899999999985 4566666654
No 166
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=29.21 E-value=31 Score=27.75 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.9
Q ss_pred HhhhCCEEEEeccc
Q 029532 56 ELAEADGFVFGFPT 69 (192)
Q Consensus 56 ~l~~aD~ii~gsP~ 69 (192)
.=..+||+|++||+
T Consensus 162 ~~~r~DGliVsTPT 175 (281)
T COG0061 162 ESFRGDGLIVSTPT 175 (281)
T ss_pred EEEecCEEEEEcCC
Confidence 34579999999998
No 167
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=29.16 E-value=1.6e+02 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=9.6
Q ss_pred hHhhhCCEEEEec
Q 029532 55 NELAEADGFVFGF 67 (192)
Q Consensus 55 ~~l~~aD~ii~gs 67 (192)
.++.++|+|||.-
T Consensus 37 ~~l~~~D~lvipG 49 (219)
T PRK03619 37 TDLDGVDAVVLPG 49 (219)
T ss_pred CCCCCCCEEEECC
Confidence 3567899988874
No 168
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=28.95 E-value=3.3e+02 Score=23.14 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCC--HHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP--EEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFK 79 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k 79 (192)
+|++...++.+.+.+++ .|..|-++++.-..| .+.+ .+-+..++.|++.-=.+..+..++|.
T Consensus 269 ~GS~~~~~keav~~LR~-~G~kVGllri~~~rPFP~~~i---------------~~~l~~~k~ViVvE~n~s~g~~g~l~ 332 (394)
T PRK08367 269 MGSLAGTLKEFVDKLRE-EGYKVGAAKLTVYRPFPVEEI---------------RALAKKAKVLAFLEKNISFGLGGAVF 332 (394)
T ss_pred eCccHHHHHHHHHHHHh-cCCcceeEEEeEecCCCHHHH---------------HHHHccCCEEEEEeCCCCCCCCCcHH
Confidence 58888889999999988 588888888765432 2222 35677888888765444333345553
No 169
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=28.68 E-value=1.6e+02 Score=18.65 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.1
Q ss_pred hhHhhhCCEEEEeccccCCCch
Q 029532 54 PNELAEADGFVFGFPTRFGMMA 75 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~ 75 (192)
.++|.++|.+|+---..+|.+|
T Consensus 47 l~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 47 LKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred HHHHhhCCEEEEeeccccCCCC
Confidence 5899999998887777777776
No 170
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.67 E-value=2.1e+02 Score=20.18 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=32.5
Q ss_pred HHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 11 EIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 11 ~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.++..++. .|.+ ++++....|.+-+ .+.+.+.+.=+++-....++....++.+++.+.
T Consensus 22 iv~~~lr~-~G~e--Vi~LG~~vp~e~i---------------~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 22 ILDRALTE-AGFE--VINLGVMTSQEEF---------------IDAAIETDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred HHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 33444555 5755 5666654343222 245555444444444445566678899999985
No 171
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.65 E-value=21 Score=23.07 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=30.2
Q ss_pred HHHHHHHHhccccCC---ceeEEE-EcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc
Q 029532 7 KLAEEIKKGASSVEG---VEAKLW-QVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 7 ~la~~i~~~l~~~~g---~ev~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y 70 (192)
.|+..++.++.+ .| .++.++ +-......+........... ....+.+.++|.||++.|-+
T Consensus 9 ~mg~al~~~l~~-~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~advvilav~p~ 72 (96)
T PF03807_consen 9 NMGSALARGLLA-SGIKPHEVIIVSSRSPEKAAELAKEYGVQATA---DDNEEAAQEADVVILAVKPQ 72 (96)
T ss_dssp HHHHHHHHHHHH-TTS-GGEEEEEEESSHHHHHHHHHHCTTEEES---EEHHHHHHHTSEEEE-S-GG
T ss_pred HHHHHHHHHHHH-CCCCceeEEeeccCcHHHHHHHHHhhcccccc---CChHHhhccCCEEEEEECHH
Confidence 478888888877 47 666654 32211001111111100000 01246778899999999875
No 172
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=28.46 E-value=1.1e+02 Score=21.29 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=30.3
Q ss_pred hhhCCEEEE-eccccC-----CCc-----hHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHH
Q 029532 57 LAEADGFVF-GFPTRF-----GMM-----AAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVH 125 (192)
Q Consensus 57 l~~aD~ii~-gsP~y~-----g~~-----~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~ 125 (192)
...||+|++ |.|.-. |+. -..+|..|+.+. +...++.+.-.+..........+.++.+.++.
T Consensus 50 ~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~G-------i~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 50 EKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELG-------IEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred HcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-------CChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 356999999 555332 222 133455555552 45455555444322211222344555555444
Q ss_pred c
Q 029532 126 H 126 (192)
Q Consensus 126 ~ 126 (192)
.
T Consensus 123 l 123 (124)
T PF02662_consen 123 L 123 (124)
T ss_pred c
Confidence 3
No 173
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=28.23 E-value=92 Score=23.90 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=25.2
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHh--hccccccCCCCCCcEEEEEe
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDA--TGGLWRTQQLAGKPAGMFYS 104 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~--~~~~~~~~~l~gK~~~~~~s 104 (192)
.+++..||.||| |- -|..+.-|+.+-.+ ...+ .+....+||+.-+|.
T Consensus 34 ~~~i~~AD~liL--PG-VGaf~~am~~L~~~gl~~~i-~~~~~~~kP~LGICl 82 (204)
T COG0118 34 PEEILKADKLIL--PG-VGAFGAAMANLRERGLIEAI-KEAVESGKPFLGICL 82 (204)
T ss_pred HHHHhhCCEEEe--cC-CCCHHHHHHHHHhcchHHHH-HHHHhcCCCEEEEeH
Confidence 588999999998 32 25555555544333 0000 011234577766654
No 174
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=27.96 E-value=1.3e+02 Score=27.32 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC-CCChhHhhhCCEEEEecccc
Q 029532 4 HVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPTR 70 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~ii~gsP~y 70 (192)
+|...++++.+.+++ .|+++++--=... ... ..+.+++.+||.||+..-.-
T Consensus 178 ht~mAae~L~~aA~~-~g~~i~vE~~g~~---------------g~~~~lt~~~i~~Ad~Viia~d~~ 229 (631)
T PRK09765 178 HTYMAAEYLEKAGRK-LGVNVYVEKQGAN---------------GIEGRLTADQLNSATACIFAAEVA 229 (631)
T ss_pred HHHHHHHHHHHHHHH-CCCeEEEEecCCc---------------CCCCCCCHHHHHhCCEEEEeecCc
Confidence 566667777777777 5776654221110 011 12368999999999986543
No 175
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=27.93 E-value=3.5e+02 Score=22.45 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCC--ChhHhhhCCEEEEeccccCCCchHH--
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPII--TPNELAEADGFVFGFPTRFGMMAAQ-- 77 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~aD~ii~gsP~y~g~~~~~-- 77 (192)
.|..+++.+.+.+.+.+ ..- +++-+-..-..+.+ .+|+... ..++-.....+.+-+|-+.++...-
T Consensus 62 ~Gg~e~l~~~i~~~~~~-~~p--~~i~v~~tc~~~li-------GdDi~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~ 131 (399)
T cd00316 62 FGGGEKLLEAIINELKR-YKP--KVIFVYTTCTTELI-------GDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYD 131 (399)
T ss_pred eCCHHHHHHHHHHHHHH-cCC--CEEEEecCchhhhh-------ccCHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHH
Confidence 35577888888887765 222 33333221111111 1332211 0122347889999999998765544
Q ss_pred --HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 78 --FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 78 --~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
++.+++.+........-..+.+-+++...... .-+..+...|...|+.++.
T Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 132 AAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred HHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEE
Confidence 44444444310000223445666666542221 2245788888899998864
No 176
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=27.72 E-value=79 Score=25.99 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCC
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLP 34 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~ 34 (192)
||..-..+-..++.+.+ .|++++++||....|
T Consensus 208 yg~mv~~al~AAe~l~~-~Gis~EVIDLRTl~P 239 (324)
T COG0022 208 YGAMVHTALEAAEELEK-EGISAEVIDLRTLSP 239 (324)
T ss_pred echHHHHHHHHHHHHhh-cCCCeEEEeccccCc
Confidence 45556666677777777 599999999987644
No 177
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.70 E-value=95 Score=23.27 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEec
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 67 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 67 (192)
.||...+++.+ +. .|+++++++ + .+++.++|+||+.-
T Consensus 9 ~gn~~~~~~~l----~~-~g~~v~~~~--~----------------------~~~l~~~d~lilpG 45 (199)
T PRK13181 9 AGNLRSVANAL----KR-LGVEAVVSS--D----------------------PEEIAGADKVILPG 45 (199)
T ss_pred CChHHHHHHHH----HH-CCCcEEEEc--C----------------------hHHhccCCEEEECC
Confidence 46777666644 44 477877762 1 36678899999854
No 178
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=27.51 E-value=58 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEE
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQ 28 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~ 28 (192)
.|+|.+++.+|+..|=+ .|+.|.+.+
T Consensus 4 ~G~~sKvaraiA~~LC~-rgv~V~m~~ 29 (164)
T PF12076_consen 4 TGNTSKVARAIALALCR-RGVQVVMLS 29 (164)
T ss_pred cccccHHHHHHHHHHHh-cCCEEEEec
Confidence 69999999999999987 588887774
No 179
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.21 E-value=1.2e+02 Score=19.23 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHhccccCCceeEE
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKL 26 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~ 26 (192)
.|.+..++..+.+.+.+ .++.+.+
T Consensus 11 ~~tS~~l~~~i~~~~~~-~~i~~~v 34 (89)
T cd05566 11 VATSTVVASKVKELLKE-NGIDVKV 34 (89)
T ss_pred ccHHHHHHHHHHHHHHH-CCCceEE
Confidence 36677888999999977 4665444
No 180
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.02 E-value=1.7e+02 Score=22.28 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.3
Q ss_pred hhHhhhCCEEEEec
Q 029532 54 PNELAEADGFVFGF 67 (192)
Q Consensus 54 ~~~l~~aD~ii~gs 67 (192)
.+.|.+||+|+|+=
T Consensus 75 ~~~l~~ad~I~l~G 88 (212)
T cd03146 75 LDALLEADVIYVGG 88 (212)
T ss_pred HHHHhcCCEEEECC
Confidence 58899999999975
No 181
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=26.80 E-value=86 Score=23.58 Aligned_cols=47 Identities=17% Similarity=0.028 Sum_probs=31.0
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g 110 (192)
..-+.+|.+++--|+ +..|+..+.+++ +..-+-|.+..++++...+|
T Consensus 69 ~sPR~aDillVeG~V-----T~~m~~~l~~~~----e~~p~pk~VIAvGaCA~~GG 115 (180)
T PRK14820 69 FSPRQADMLMVMGTI-----AKKMAPVLKQVY----LQMAEPRWVVAVGACASSGG 115 (180)
T ss_pred CCCccceEEEEEecC-----CcccHHHHHHHH----HhcCCCCeEEEEecccccCC
Confidence 456788888886554 555577777765 22345688888888866543
No 182
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=26.75 E-value=1.6e+02 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCC
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPET 32 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~ 32 (192)
+|++...+.++.+.+++ .|+++.++++...
T Consensus 254 ~Gs~~~~a~eA~~~L~~-~Gi~v~vi~~~~l 283 (352)
T PRK07119 254 YGTSARIAKSAVDMARE-EGIKVGLFRPITL 283 (352)
T ss_pred cCccHHHHHHHHHHHHH-cCCeEEEEeecee
Confidence 57888888888888887 5889988887654
No 183
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.67 E-value=1.3e+02 Score=23.47 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEec
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 67 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 67 (192)
..+...+.+++ .|+++.-+++...... . ....+.++|+|.+|-
T Consensus 50 Yv~k~~~~l~~-lg~~v~~L~l~~~~~~-~---------------Ie~~l~~~d~IyVgG 92 (224)
T COG3340 50 YVEKVRNALAK-LGLEVSELHLSKPPLA-A---------------IENKLMKADIIYVGG 92 (224)
T ss_pred HHHHHHHHHHH-cCCeeeeeeccCCCHH-H---------------HHHhhhhccEEEECC
Confidence 34455555555 3666655555542111 1 135677799999983
No 184
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.63 E-value=37 Score=27.50 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+||||++||+
T Consensus 175 ~~~DGlIVSTPT 186 (287)
T PRK14077 175 YFGDGVIVATPA 186 (287)
T ss_pred EEcCEEEEeCCC
Confidence 469999999998
No 185
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=26.44 E-value=1.8e+02 Score=19.97 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=11.6
Q ss_pred hHhhhCCEEEEecccc
Q 029532 55 NELAEADGFVFGFPTR 70 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y 70 (192)
.+-.++|.||+|+--.
T Consensus 99 a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 99 VADHGITKLVMGASSD 114 (146)
T ss_pred HHHcCCCEEEEeccCC
Confidence 3445689999998654
No 186
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=26.41 E-value=82 Score=25.04 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=27.9
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCC-CCChhHhhhCCEEEEeccc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVP-IITPNELAEADGFVFGFPT 69 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~aD~ii~gsP~ 69 (192)
-++.+.+.+++ .|.++..+.+-+..+. ++.+ .....++.++|.|||.||.
T Consensus 29 q~~~l~~~L~~-~G~~~~~~P~i~i~~~-----------~~~~~~~~l~~l~~~d~iiftS~N 79 (266)
T PRK08811 29 EHAPLRRAVAR-HGGRLLALSPWRLQRL-----------DTAQARDALRQALAAPIVVFTSPA 79 (266)
T ss_pred HHHHHHHHHHH-CCCcEEEcCceeecCC-----------CchhHHHHHhhcccCCEEEEECHH
Confidence 34566677777 5877665543221000 0000 0013667799999999975
No 187
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=26.39 E-value=1.4e+02 Score=27.19 Aligned_cols=61 Identities=26% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhccccCCc-eeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHH
Q 029532 4 HVEKLAEEIKKGASSVEGV-EAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFL 82 (192)
Q Consensus 4 nT~~la~~i~~~l~~~~g~-ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fl 82 (192)
+|..+|.+....+++ .|+ -|++..|.+. | ..-=..||++-+=+|+--++-|..||.|+
T Consensus 162 ~~~e~a~~llpYl~e-lG~T~IELMPv~e~-p-------------------~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 162 GYFELAIELLPYLKE-LGITHIELMPVAEH-P-------------------GDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred CHHHHHHHHhHHHHH-hCCCEEEEcccccC-C-------------------CCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 578899999999999 587 4777776653 1 23346789999999999899999999999
Q ss_pred Hhh
Q 029532 83 DAT 85 (192)
Q Consensus 83 d~~ 85 (192)
|.+
T Consensus 221 D~a 223 (628)
T COG0296 221 DAA 223 (628)
T ss_pred HHH
Confidence 998
No 188
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=26.26 E-value=1.4e+02 Score=22.60 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=30.6
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g 110 (192)
..-+.||.+++. |.++-.|+..+.++. +..-+-|.+..++++...+|
T Consensus 69 ~SPR~ADillVt-----G~VT~~m~~~l~r~y----e~~p~pK~VIAvGsCA~~GG 115 (183)
T PRK14815 69 FSPRQADVMIVA-----GTVTYKMALAVRRIY----DQMPEPKWVIAMGACASSGG 115 (183)
T ss_pred CCCccccEEEEe-----CcCchhhHHHHHHHH----HhCCCCCEEEEeccccccCC
Confidence 445678888875 555666666666664 22345688888888865543
No 189
>PLN02808 alpha-galactosidase
Probab=26.25 E-value=3.1e+02 Score=23.36 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=37.7
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecC-----CCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 58 AEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG-----SQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 58 ~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g-----~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
++.++-++.-|+.| |.-||.+.|++. =+|-++++....| +...|.......-.+.+..+|+.++-
T Consensus 82 rd~~G~~~~d~~rF---P~G~~~lad~iH-------~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK 151 (386)
T PLN02808 82 RDSQGNLVPKASTF---PSGIKALADYVH-------SKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLK 151 (386)
T ss_pred cCCCCCEeeChhhc---CccHHHHHHHHH-------HCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEe
Confidence 45566666666654 346888888884 1555666665432 21112223334445566788887764
No 190
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=26.19 E-value=3.8e+02 Score=22.24 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=17.8
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
+.+.++|.||+..|.. ..++..++.+
T Consensus 77 eaa~~ADvVIlaVP~~-----~~v~~Vl~~L 102 (342)
T PRK12557 77 EAAKHGEIHILFTPFG-----KKTVEIAKNI 102 (342)
T ss_pred HHHhCCCEEEEECCCc-----HHHHHHHHHH
Confidence 5578899999999963 2345555544
No 191
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=25.97 E-value=2.4e+02 Score=19.90 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=40.3
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
...+..+|++||....-...-...++.|+..+.. ...++.++.++++--................+...++.++
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~----~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 3567789999998776544444567777776641 1235677777776311110111112234444455666554
No 192
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=25.81 E-value=1.9e+02 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=11.5
Q ss_pred hhHhhhCCEEEEe
Q 029532 54 PNELAEADGFVFG 66 (192)
Q Consensus 54 ~~~l~~aD~ii~g 66 (192)
.+.|.+||+|+|+
T Consensus 77 ~~~l~~ad~I~~~ 89 (250)
T TIGR02069 77 IALLSNATGIFFT 89 (250)
T ss_pred HHHHhhCCEEEEe
Confidence 5789999999997
No 193
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=25.68 E-value=96 Score=25.12 Aligned_cols=44 Identities=18% Similarity=-0.009 Sum_probs=27.3
Q ss_pred hHhhhCCEEEEecc-ccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 55 NELAEADGFVFGFP-TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 55 ~~l~~aD~ii~gsP-~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
+++.++|.||+... .......+.+..||.+.. -++|.++.++++
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~g 115 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAH-------ARGARLCSICSG 115 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHH-------HcCCEEEEEcHH
Confidence 45678999998442 111223567777777753 266777767664
No 194
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=25.63 E-value=3.3e+02 Score=21.32 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecccc-CCCchHHHHHH
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTR-FGMMAAQFKAF 81 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~g~~~~~~k~f 81 (192)
|..+-+-+.+...+.+.+|++ ++||....|.+-+ .+...+-...+++...- --+|++ ++..
T Consensus 114 GDvHdIGk~iV~~ml~~aGfe--vidLG~dvP~e~f---------------ve~a~e~k~d~v~~SalMTttm~~-~~~v 175 (227)
T COG5012 114 GDVHDIGKNIVATMLEAAGFE--VIDLGRDVPVEEF---------------VEKAKELKPDLVSMSALMTTTMIG-MKDV 175 (227)
T ss_pred ccHHHHHHHHHHHHHHhCCcE--EEecCCCCCHHHH---------------HHHHHHcCCcEEechHHHHHHHHH-HHHH
Confidence 334444433333332224644 6787765443322 24444444445554444 345554 8999
Q ss_pred HHhhccccccCCCCCCcEE
Q 029532 82 LDATGGLWRTQQLAGKPAG 100 (192)
Q Consensus 82 ld~~~~~~~~~~l~gK~~~ 100 (192)
+|.+. ..-+++|...
T Consensus 176 iE~L~----eeGiRd~v~v 190 (227)
T COG5012 176 IELLK----EEGIRDKVIV 190 (227)
T ss_pred HHHHH----HcCCccCeEE
Confidence 99986 3456777653
No 195
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=25.56 E-value=1.4e+02 Score=26.52 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEec
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGF 67 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 67 (192)
||...+++++.+ .|+++.+++. ..++.++|+||+.-
T Consensus 17 GN~~sl~~al~~-----~G~~v~~v~~------------------------~~~l~~~D~lIlpG 52 (538)
T PLN02617 17 GNVRSVRNAIRH-----LGFTIKDVQT------------------------PEDILNADRLIFPG 52 (538)
T ss_pred CCHHHHHHHHHH-----CCCeEEEECC------------------------hhhhccCCEEEECC
Confidence 677766666654 3667765531 25778999999964
No 196
>PRK06444 prephenate dehydrogenase; Provisional
Probab=25.52 E-value=53 Score=24.97 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccccCCceeE
Q 029532 6 EKLAEEIKKGASSVEGVEAK 25 (192)
Q Consensus 6 ~~la~~i~~~l~~~~g~ev~ 25 (192)
-+|.+.++..+++ .|.+|.
T Consensus 10 G~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 10 GRLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred CcHHHHHHHHHHh-CCCEEE
Confidence 4577778888877 477654
No 197
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=25.48 E-value=3.4e+02 Score=21.48 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=31.6
Q ss_pred HhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 56 ELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 56 ~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
-...+|. ++.-|.|-- .-|+.|+.|-. ..|++.-...+-+++... ........+.+.+...|+.+-.
T Consensus 109 ~~~~fD~-f~TDPPyT~---~G~~LFlsRgi-----~~Lk~~g~~gy~~~~~~~-~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 109 LRGKFDV-FFTDPPYTP---EGLKLFLSRGI-----EALKGEGCAGYFGFTHKE-ASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp TSS-BSE-EEE---SSH---HHHHHHHHHHH-----HTB-STT-EEEEEE-TTT---HHHHHHHHHHHHTS--EEEE
T ss_pred HhcCCCE-EEeCCCCCH---HHHHHHHHHHH-----HHhCCCCceEEEEEecCc-CcHHHHHHHHHHHHHCCcCHHH
Confidence 3456665 556677632 67899999964 245555433333443321 1122234566777788877643
No 198
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=25.19 E-value=3.3e+02 Score=21.22 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=25.9
Q ss_pred CCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCC
Q 029532 96 GKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIG 134 (192)
Q Consensus 96 gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 134 (192)
+|+++.+=+++..... ....+..++.|...|+.+....
T Consensus 32 ~~~i~FIPtAs~~~~~-~~Yv~k~~~~l~~lg~~v~~L~ 69 (224)
T COG3340 32 RKTIAFIPTASVDSED-DFYVEKVRNALAKLGLEVSELH 69 (224)
T ss_pred CceEEEEecCccccch-HHHHHHHHHHHHHcCCeeeeee
Confidence 4477766665544333 3456788899999999997653
No 199
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.19 E-value=4.4e+02 Score=24.45 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAF 81 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~f 81 (192)
+|++-..|..+++.|++ .|++++++|+.-..|-+. +...+.+...+.||..==-+.|++-..+..+
T Consensus 575 ~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPLD~-------------e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~ 640 (701)
T PLN02225 575 YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPLDI-------------KLVRDLCQNHKFLITVEEGCVGGFGSHVAQF 640 (701)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCH-------------HHHHHHHhhcCeEEEEcCCCCCchHHHHHHH
Confidence 67888888888888887 699999999876533110 0123566778877777444458888888877
Q ss_pred HHhh
Q 029532 82 LDAT 85 (192)
Q Consensus 82 ld~~ 85 (192)
+-..
T Consensus 641 l~~~ 644 (701)
T PLN02225 641 IALD 644 (701)
T ss_pred HHhc
Confidence 7553
No 200
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.13 E-value=1.6e+02 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=11.5
Q ss_pred hhHhhhCCEEEEec
Q 029532 54 PNELAEADGFVFGF 67 (192)
Q Consensus 54 ~~~l~~aD~ii~gs 67 (192)
.+++.++|+|||.-
T Consensus 36 ~~~l~~~d~lIlpG 49 (209)
T PRK13146 36 PDAVAAADRVVLPG 49 (209)
T ss_pred HHHhcCCCEEEECC
Confidence 47899999999953
No 201
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=25.07 E-value=3.8e+02 Score=22.67 Aligned_cols=70 Identities=11% Similarity=-0.066 Sum_probs=43.3
Q ss_pred hhHhhhCCEEEEeccccCCCchHH-HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQ-FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~-~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
.+.+.+....+.-+|-++..--++ .-..+=.+.... ...+.||++++++.+ .... .+...+..+||.++.
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-g~~L~gktvGIIG~G-----~IG~---~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-GFSLHDRTVGIVGVG-----NVGR---RLQARLEALGIKTLL 144 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-CCCcCCCEEEEECcC-----HHHH---HHHHHHHHCCCEEEE
Confidence 466778888888899887653332 222121111111 236899999999873 2222 466677889999975
No 202
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.00 E-value=1.5e+02 Score=22.41 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=21.6
Q ss_pred CcEEEEEecCC--CCCChHHHHHHHHHHHHHcCCEE
Q 029532 97 KPAGMFYSTGS--QGGGQETTALTAITQLVHHGMIF 130 (192)
Q Consensus 97 K~~~~~~s~g~--~~g~~~~~l~~~~~~l~~~g~~v 130 (192)
|+++++++=|= ..||.|...++|...+...|+.+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 56677777653 34666766777777766656553
No 203
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.87 E-value=36 Score=27.32 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=11.2
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++|||
T Consensus 156 ~~~DGlIVsTPT 167 (271)
T PRK01185 156 FKADGVIVATPT 167 (271)
T ss_pred EEeeEEEEeCCC
Confidence 689999999998
No 204
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.81 E-value=41 Score=27.49 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=10.8
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++|||
T Consensus 183 ~~~DGlIVsTPT 194 (306)
T PRK03372 183 FGCDGVLVSTPT 194 (306)
T ss_pred EecCEEEEeCCC
Confidence 468999999998
No 205
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.78 E-value=40 Score=27.53 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++|||
T Consensus 179 ~~~DGlIVsTPT 190 (305)
T PRK02649 179 IAADGVILSTPT 190 (305)
T ss_pred EecCeEEEeCCC
Confidence 589999999998
No 206
>PRK08655 prephenate dehydrogenase; Provisional
Probab=24.77 E-value=94 Score=26.71 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 7 KLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 7 ~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
.|...++..+.+ .|.+|.+++.............+.. ......+.+.++|.||+++|.. .+..+++.+.
T Consensus 11 ~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~----~~~~~~e~~~~aDvVIlavp~~------~~~~vl~~l~ 79 (437)
T PRK08655 11 GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVE----YANDNIDAAKDADIVIISVPIN------VTEDVIKEVA 79 (437)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCe----eccCHHHHhccCCEEEEecCHH------HHHHHHHHHH
Confidence 466777888877 5888888875432111111111110 0001135678999999999974 4455556653
No 207
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.75 E-value=2.6e+02 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=17.3
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhh
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDAT 85 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~ 85 (192)
+.+.++|.||++.|. ..+...+..+
T Consensus 59 e~~~~aDiIiLavkP------~~~~~vl~~l 83 (272)
T PRK12491 59 EVANSADILILSIKP------DLYSSVINQI 83 (272)
T ss_pred HHHhhCCEEEEEeCh------HHHHHHHHHH
Confidence 456799999999995 3444444444
No 208
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.48 E-value=1.6e+02 Score=22.31 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEecc
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFP 68 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 68 (192)
||...+.+++.+ .|+++.+++ + .+++.++|+||+--+
T Consensus 10 gN~~s~~~al~~-----~g~~~~~v~--~----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 10 GNISNVKRAIEH-----LGYEVVVSN--T----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred ccHHHHHHHHHH-----cCCCEEEEe--C----------------------HHHhccCCEEEECCC
Confidence 666666666554 367777764 2 377888999988443
No 209
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.45 E-value=1e+02 Score=24.03 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=27.2
Q ss_pred HHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCC--CChhHhhhCCEEEEeccc
Q 029532 9 AEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI--ITPNELAEADGFVFGFPT 69 (192)
Q Consensus 9 a~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~aD~ii~gsP~ 69 (192)
++.+++.+++ .|+++..+.+-+..+. ++.+. ....++.++|.|||.||.
T Consensus 15 ~~~l~~~l~~-~G~~~~~~P~i~i~p~-----------~~~~~~~~~l~~l~~~d~iifTS~n 65 (255)
T PRK05752 15 CAALAASLAE-AGIFSSSLPLLAIEPL-----------PETPEQRALLLELDRYCAVIVVSKP 65 (255)
T ss_pred HHHHHHHHHH-cCCCEEEcCcEEEeeC-----------CCCHHHHHHHhcCCCCCEEEEECHH
Confidence 4566677777 5877665533221110 00000 013567899999999975
No 210
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.31 E-value=37 Score=27.55 Aligned_cols=12 Identities=42% Similarity=0.579 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++|||
T Consensus 174 ~~~DGlIVsTPT 185 (292)
T PRK01911 174 YWADGLIVATPT 185 (292)
T ss_pred EeeceeEECCCC
Confidence 469999999999
No 211
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=24.29 E-value=1.7e+02 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=11.2
Q ss_pred hHhhhCCEEEEecc
Q 029532 55 NELAEADGFVFGFP 68 (192)
Q Consensus 55 ~~l~~aD~ii~gsP 68 (192)
.++.++|+||+.-.
T Consensus 42 ~~~~~~dgvil~Gg 55 (188)
T cd01741 42 PDLDDYDGLVILGG 55 (188)
T ss_pred CCcccCCEEEECCC
Confidence 56889999999743
No 212
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=24.09 E-value=1.5e+02 Score=20.61 Aligned_cols=48 Identities=8% Similarity=-0.047 Sum_probs=30.2
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
..-+..+|++|+....-...-...+..|++.+.. ....+.++.++++-
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~----~~~~~~pivvv~nK 114 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELRE----YADPNVVIMLVGNK 114 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEEc
Confidence 4567889999999766543333445667766531 11246788877763
No 213
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=24.07 E-value=1.7e+02 Score=21.05 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecC
Q 029532 95 AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 95 ~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
+-|++++++.+..+. +.-.....+|..+|..+++.
T Consensus 15 ~~K~IAvVG~S~~P~----r~sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 15 SAKTIAVVGASDKPD----RPSYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred hCceEEEEecCCCCC----ccHHHHHHHHHHCCCEEEee
Confidence 569999999875542 22335777889999999874
No 214
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=24.00 E-value=2.1e+02 Score=21.58 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=12.2
Q ss_pred hhHhhhCCEEEEec
Q 029532 54 PNELAEADGFVFGF 67 (192)
Q Consensus 54 ~~~l~~aD~ii~gs 67 (192)
.+.|.+||+|+|+-
T Consensus 75 ~~~l~~ad~I~~~G 88 (210)
T cd03129 75 VARLLEADGIFVGG 88 (210)
T ss_pred HHHHhhCCEEEEcC
Confidence 57899999999974
No 215
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.99 E-value=2.4e+02 Score=19.16 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEEecCCCCCC--hHHHHHHHHHHHHHcCCEEecCCc
Q 029532 92 QQLAGKPAGMFYSTGSQGGG--QETTALTAITQLVHHGMIFVPIGY 135 (192)
Q Consensus 92 ~~l~gK~~~~~~s~g~~~g~--~~~~l~~~~~~l~~~g~~vv~~~~ 135 (192)
..++||++.++-++.. .|- +-..+..|...+...|+.|++.+.
T Consensus 17 ~~y~Gkv~LIVNvAs~-Cg~t~qy~~L~~L~~ky~~~gl~ILaFPc 61 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASK-CGYTKQYKQLNELYEKYKDKGLEILAFPC 61 (108)
T ss_dssp GGGTTSEEEEEEEESS-STTHHHHHHHHHHHHHHGGGTEEEEEEEB
T ss_pred HHcCCCEEEEEecccc-cCCccccHHHHHHHHHHhcCCeEEEeeeh
Confidence 4689999987766432 122 334567777777888999987554
No 216
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.78 E-value=42 Score=26.75 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 135 ~~gDGlIVsTPt 146 (259)
T PRK00561 135 YRGSGLLIGPRT 146 (259)
T ss_pred EecCEEEEeCch
Confidence 589999999998
No 217
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=23.71 E-value=2.1e+02 Score=25.02 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
-+..+++.|++ .|+++..+..-+..+ ...++...+++.++|-|||.||. -++.|++++.
T Consensus 262 q~~~l~~~L~~-~GA~v~~~P~i~~~~------------~~~~~~~l~~l~~ydwlvFTS~n-------gV~~Ff~~l~ 320 (474)
T PRK07168 262 KTSVMKQKLQE-AGAEIYQIPTFKKEE------------YTLTLEQINEIFNVNRLVFCSAE-------SVEILMQSCS 320 (474)
T ss_pred HHHHHHHHHHH-cCCEEEEeccEEeeC------------CCCcHHHHHHhccCCEEEEcCHH-------HHHHHHHHHH
Confidence 45567777777 587765443221100 00001124789999999999874 6799999986
No 218
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.64 E-value=45 Score=26.66 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 147 ~~~DGlIVsTPt 158 (264)
T PRK03501 147 FRGDGMVVSTPT 158 (264)
T ss_pred EecCEEEEeCCC
Confidence 479999999998
No 219
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=23.59 E-value=1e+02 Score=22.80 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=26.2
Q ss_pred hHhhhCCEEEEecc---cc--CCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 55 NELAEADGFVFGFP---TR--FGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 55 ~~l~~aD~ii~gsP---~y--~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
++..++|.||+... .. ...-.+.+..|+.+.. -++|.++.++++
T Consensus 65 ~~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~G 113 (195)
T cd03138 65 ADVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQH-------ANGATVAAACTG 113 (195)
T ss_pred cccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHH-------HcCCEEEEecHH
Confidence 45678999998432 11 1223456777776653 256777666654
No 220
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.39 E-value=46 Score=26.57 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++||+
T Consensus 146 ~~gDGlIVsTpt 157 (265)
T PRK04885 146 FRGDGLCVSTPT 157 (265)
T ss_pred EEcCEEEEECCC
Confidence 589999999998
No 221
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=23.38 E-value=1.1e+02 Score=23.46 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=26.6
Q ss_pred HhhhCCEEEEec---cccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEec
Q 029532 56 ELAEADGFVFGF---PTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYST 105 (192)
Q Consensus 56 ~l~~aD~ii~gs---P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~ 105 (192)
++.++|+|++.- |.+...-...+..|+.++. -++|+++.++++
T Consensus 87 ~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaIC~g 132 (221)
T cd03141 87 DPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY-------ENGKVVAAVCHG 132 (221)
T ss_pred CHhHceEEEECCCcccccccccCHHHHHHHHHHH-------HcCCEEEEEcch
Confidence 356899999873 3343444566777777653 256666666553
No 222
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.17 E-value=4.6e+02 Score=22.40 Aligned_cols=69 Identities=6% Similarity=-0.076 Sum_probs=39.4
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHhhccccccC-C--CCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEe
Q 029532 59 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQ-Q--LAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFV 131 (192)
Q Consensus 59 ~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~-~--l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv 131 (192)
....|.+-||-|-|+...-...+++.+...+... . -..+.+-+++. +...+. .+..+...|...|+.++
T Consensus 120 ~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~--~~~~~d--~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 120 DFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPG--FDTYAG--NMREIKRLLELMGVDYT 191 (435)
T ss_pred CCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECC--CCCCcc--hHHHHHHHHHHcCCCEE
Confidence 4678888899998877655555555543211111 0 12334545532 221111 24578888889999886
No 223
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.11 E-value=47 Score=26.32 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++||+
T Consensus 144 ~~~DG~ivsTpt 155 (256)
T PRK14075 144 FFADGVVISTPT 155 (256)
T ss_pred EecCEEEEeCCC
Confidence 579999999998
No 224
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=23.03 E-value=2.3e+02 Score=20.30 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCC-CChhHhhhCCEEEEecccc-CCCchHHHHHHHHhhccccc
Q 029532 13 KKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPI-ITPNELAEADGFVFGFPTR-FGMMAAQFKAFLDATGGLWR 90 (192)
Q Consensus 13 ~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~aD~ii~gsP~y-~g~~~~~~k~fld~~~~~~~ 90 (192)
.+.+++ .+.++.++++..... . ....+++. ...+.+.+||.+++..-+- |+++.. +|++.
T Consensus 24 ~~~l~~-~~~~v~v~d~~~~~~---~-----~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~----iL~~~----- 85 (147)
T PF04016_consen 24 VEKLKE-RGAEVRVFDLNPDNI---G-----EEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDD----ILELA----- 85 (147)
T ss_dssp HHHHCC-CCSEEEEEESSGGG----------SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHH----HHHHT-----
T ss_pred HHHHhc-CCCCEEEEECCCCCC---C-----CCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHH----HHHhC-----
Confidence 445555 477899999875210 0 00011111 1257899999998875554 666654 44454
Q ss_pred cCCCCCCcEEEEEec
Q 029532 91 TQQLAGKPAGMFYST 105 (192)
Q Consensus 91 ~~~l~gK~~~~~~s~ 105 (192)
. +++.+.+++.+
T Consensus 86 --~-~~~~vil~GpS 97 (147)
T PF04016_consen 86 --R-NAREVILYGPS 97 (147)
T ss_dssp --T-TSSEEEEESCC
T ss_pred --c-cCCeEEEEecC
Confidence 2 57788777764
No 225
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=23.01 E-value=2e+02 Score=21.28 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCceeEEEEcCCC-CCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHH
Q 029532 20 EGVEAKLWQVPET-LPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLD 83 (192)
Q Consensus 20 ~g~ev~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld 83 (192)
.|.++.++...+. ..++... ...++|..||.|| +|=.+....-..+..-++
T Consensus 29 p~l~l~~~~~~el~~~~~~~~------------~~~~aia~ADii~-~smlF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 29 PGLELSVFAAAELERDPEALE------------ECEAAIARADIIF-GSMLFIEDHVRPLLPALE 80 (164)
T ss_pred CCeEEEEEeHHHhhcChHHHH------------HHHHHHHhCCEEE-eehhhhHHHHHHHHHHHH
Confidence 5789999987765 2221110 1258999999654 555554444444444444
No 226
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=22.98 E-value=3.9e+02 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.9
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
+.+.++|.||++.|.. .+..++.++.
T Consensus 78 eal~~ADiIIlAVPs~------~i~~vl~~l~ 103 (342)
T TIGR03376 78 EAAKGADILVFVIPHQ------FLEGICKQLK 103 (342)
T ss_pred HHHhcCCEEEEECChH------HHHHHHHHHH
Confidence 4578899999999986 4455555553
No 227
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=22.95 E-value=5.4e+02 Score=22.81 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCC---hhHhhhCCEEEEeccccCC-CchH-
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIIT---PNELAEADGFVFGFPTRFG-MMAA- 76 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~aD~ii~gsP~y~g-~~~~- 76 (192)
.|-.++|.+.|.+.++. .. ..+.+-+...-.... .-||++... .++..+...|-+-||-|-| +..+
T Consensus 109 fGGe~kL~~~I~ea~~~-~~-~p~~I~V~tTC~t~l-------IGDDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg 179 (513)
T TIGR01861 109 FGAEKLLKQNIIEAFKA-FP-HIKRMTIYQTCATAL-------IGDDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGG 179 (513)
T ss_pred eCcHHHHHHHHHHHHHh-CC-CCCeEEEEccCchhh-------ccCCHHHHHHHHHHhcCCCcEEEEeCCCccCccccch
Confidence 46677788888887754 11 122233222101111 123332211 1223346788889999987 4443
Q ss_pred ---HHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 77 ---QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 77 ---~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
.++.+++++........-....+-+++.+-+. |.. ..+...|...|+.++.
T Consensus 180 ~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~-gD~----~eik~lLe~~Gl~v~~ 233 (513)
T TIGR01861 180 HHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQ-GDQ----EVMVDYFQRMGIQVLS 233 (513)
T ss_pred HHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCc-cCH----HHHHHHHHHCCCeEEE
Confidence 47788887642110011112345567665543 232 3677788899999874
No 228
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=22.88 E-value=91 Score=27.09 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=21.9
Q ss_pred ccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCC
Q 029532 69 TRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGS 107 (192)
Q Consensus 69 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~ 107 (192)
+|-+++...|-..||... ...+.||++++| |||+
T Consensus 329 ~YtaSlyl~L~Sll~~~~----~~~~~g~ri~~f-SYGS 362 (454)
T TIGR01833 329 MYTASLYGCLASLLSSKS----AQELAGKRVGMF-SYGS 362 (454)
T ss_pred hhhhHHHHHHHHHHhhCC----ccccCCCEEEEE-eccC
Confidence 444556666777776542 125789999888 5554
No 229
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.88 E-value=47 Score=26.66 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++||+
T Consensus 154 ~~~DGlIVsTPt 165 (272)
T PRK02231 154 QRSDGLIISTPT 165 (272)
T ss_pred EecCeEEEECCC
Confidence 379999999998
No 230
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.88 E-value=5.1e+02 Score=22.54 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh---hhCCEEEEeccccCCCch---
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL---AEADGFVFGFPTRFGMMA--- 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~aD~ii~gsP~y~g~~~--- 75 (192)
+|..++|.+.|.+..+. .. .+++-+...-..+.+ .||+... ..++ .....|.+-||-|-++..
T Consensus 101 fGg~~kL~~~I~ei~~~-~~--P~~I~V~tTC~~~lI-------GdDi~~v-~~~~~~~~~~pvi~v~t~Gf~g~~~~G~ 169 (475)
T PRK14478 101 FGGEKKLFKAIDEIIEK-YA--PPAVFVYQTCVVALI-------GDDIDAV-CKRAAEKFGIPVIPVNSPGFVGNKNLGN 169 (475)
T ss_pred eCCHHHHHHHHHHHHHh-cC--CCEEEEeCCChHHHh-------ccCHHHH-HHHHHHhhCCCEEEEECCCcccchhhhH
Confidence 47788899999888865 22 333333321111111 1333211 1222 257788888888877433
Q ss_pred -HHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 76 -AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 -~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
..++.+++.+........-..+.+-+++.+.+. +. +..+...|...|+.++.
T Consensus 170 ~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~-gd----~~elk~lL~~~Gl~v~~ 222 (475)
T PRK14478 170 KLAGEALLDHVIGTVEPEDTTPYDINILGEYNLA-GE----LWQVKPLLDRLGIRVVA 222 (475)
T ss_pred HHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCC-CC----HHHHHHHHHHcCCeEEE
Confidence 345556665431100111234567777766543 22 23677788899999874
No 231
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.76 E-value=47 Score=27.02 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=10.9
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|++|++|||
T Consensus 179 ~~~DGlIVsTPT 190 (296)
T PRK04539 179 QRSDGLIVSTPT 190 (296)
T ss_pred EecCeEEEECCC
Confidence 379999999999
No 232
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=22.40 E-value=90 Score=23.49 Aligned_cols=47 Identities=19% Similarity=0.034 Sum_probs=29.8
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g 110 (192)
..-+.||.+++.-|+ +..|...++++. +..-+-|.+..++++...+|
T Consensus 71 ~sPR~ADillVeG~V-----T~~m~~~l~~~~----e~~p~pK~VIAvGaCA~~GG 117 (181)
T PRK14817 71 FSPRQADLLMVVGTV-----NCKQAPILQRVY----EQMADPKWVMAFGVCASSGG 117 (181)
T ss_pred CCCcceeEEEEEecC-----CccchHHHHHHH----HHcccCCEEEEeccccccCC
Confidence 556889988887655 344455555654 12335678888888866543
No 233
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=22.38 E-value=3e+02 Score=21.69 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=46.3
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecC
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPI 133 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 133 (192)
...+.=.+||+|.+-.--| ..|+.||+++. ... |.+ +|.. .....+..+...|...|+.+.|.
T Consensus 146 ~~~~~~~~GIlft~~~~KG---~~L~~fL~~~~------~~p-k~I-IfID------D~~~nl~sv~~a~k~~~I~f~G~ 208 (252)
T PF11019_consen 146 SRAPSFYDGILFTGGQDKG---EVLKYFLDKIN------QSP-KKI-IFID------DNKENLKSVEKACKKSGIDFIGF 208 (252)
T ss_pred CCCceeecCeEEeCCCccH---HHHHHHHHHcC------CCC-CeE-EEEe------CCHHHHHHHHHHHhhCCCcEEEE
Confidence 3556667899998876555 78999999985 222 344 3433 23456778999999999998876
Q ss_pred Ccc
Q 029532 134 GYT 136 (192)
Q Consensus 134 ~~~ 136 (192)
-|.
T Consensus 209 ~Yt 211 (252)
T PF11019_consen 209 HYT 211 (252)
T ss_pred EEc
Confidence 554
No 234
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.27 E-value=50 Score=26.94 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 177 ~~gDGlIVsTPt 188 (305)
T PRK02645 177 YQGDGLIVSTPT 188 (305)
T ss_pred EecCEEEEecCC
Confidence 489999999998
No 235
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=22.06 E-value=3.2e+02 Score=21.86 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=37.5
Q ss_pred HHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCC---CC----CCCC-CCCh-hHhhhCCEEEEeccccCCCchHHH
Q 029532 8 LAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAP---PK----SDVP-IITP-NELAEADGFVFGFPTRFGMMAAQF 78 (192)
Q Consensus 8 la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~---~~----~~~~-~~~~-~~l~~aD~ii~gsP~y~g~~~~~~ 78 (192)
|...++..+.+ .|.+|.+++..+............. .. .... .... +.+.++|.||+.+|.+ .+
T Consensus 12 mG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~------~~ 84 (325)
T PRK00094 12 WGTALAIVLAR-NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ------AL 84 (325)
T ss_pred HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH------HH
Confidence 45566666666 4889988876432111111110000 00 0010 0122 3567999999999974 45
Q ss_pred HHHHHhhc
Q 029532 79 KAFLDATG 86 (192)
Q Consensus 79 k~fld~~~ 86 (192)
...++.+.
T Consensus 85 ~~v~~~l~ 92 (325)
T PRK00094 85 REVLKQLK 92 (325)
T ss_pred HHHHHHHH
Confidence 55555553
No 236
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.02 E-value=51 Score=26.50 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=11.1
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 163 ~~gDGvIvsTpt 174 (277)
T PRK03708 163 VRADGLIISTPT 174 (277)
T ss_pred EecCEEEEeCCC
Confidence 589999999998
No 237
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.83 E-value=3.2e+02 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=20.0
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
+.+.++|.||+++|.+ .+...++.+.
T Consensus 73 ~a~~~aDlVilavps~------~~~~vl~~i~ 98 (341)
T PRK12439 73 EAANCADVVVMGVPSH------GFRGVLTELA 98 (341)
T ss_pred HHHhcCCEEEEEeCHH------HHHHHHHHHH
Confidence 4578899999999965 5666777764
No 238
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.80 E-value=2.2e+02 Score=18.02 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhccccc----cCCC-CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 75 AAQFKAFLDATGGLWR----TQQL-AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 75 ~~~~k~fld~~~~~~~----~~~l-~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
||.++.|++.+.+-|. .-+. .+..+-++....-.. . ....+...|...|+.+..
T Consensus 12 pGal~~Fl~~l~p~~~ITeF~YR~~~~~~a~vlvGi~~~~-~---~~~~l~~~l~~~g~~~~d 70 (81)
T cd04907 12 PGALKKFLNELLPKWNITLFHYRNQGSDYGRVLVGIQVPD-A---DLDELKERLDALGYPYQE 70 (81)
T ss_pred CCHHHHHHHHhCCCCeEeEEEEecCCCCceeEEEEEEeCh-H---HHHHHHHHHHHcCCCeEE
Confidence 6889999999974331 0011 123333333322111 1 355788888888887654
No 239
>PLN02692 alpha-galactosidase
Probab=21.78 E-value=4.6e+02 Score=22.56 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=35.5
Q ss_pred hCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecC-----CCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 59 EADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTG-----SQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 59 ~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g-----~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
+.++-++..|.-| |.-||.+.|++.. +|-++++.+..| +...|.........+.+..+|+.++-
T Consensus 107 d~~G~~~~d~~kF---P~G~k~ladyiH~-------~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK 175 (412)
T PLN02692 107 DEKGNLVPKKSTF---PSGIKALADYVHS-------KGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLK 175 (412)
T ss_pred CCCCCeeeChhhc---CCcHHHHHHHHHH-------CCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEe
Confidence 3344455555543 3458999999841 555666655332 22222223334455566889987764
No 240
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=21.68 E-value=77 Score=24.01 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHhccccCCceeEEEEcCCCCC---HHHhcccCCCCCCCCCCCChhHhh--hCCEEEEeccc
Q 029532 11 EIKKGASSVEGVEAKLWQVPETLP---EEVLGKMSAPPKSDVPIITPNELA--EADGFVFGFPT 69 (192)
Q Consensus 11 ~i~~~l~~~~g~ev~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~gsP~ 69 (192)
++++.+++ .|.++..+.+-+..+ ..... ...+.+. .+|.|||.||.
T Consensus 2 ~l~~~l~~-~G~~~~~~P~i~~~~~~~~~~l~------------~~l~~l~~~~~d~viftS~~ 52 (231)
T PF02602_consen 2 ELAALLRA-LGAEVIELPLIEIEPLPDLASLE------------AALEQLPPGNYDWVIFTSPN 52 (231)
T ss_dssp HHHHHHHH-TTEEEEEEESEEEEECCHHHHHH------------HHHHHHTGCCSSEEEESSHH
T ss_pred HHHHHHHH-CCCcEEEECCEEEEeCCCHHHHH------------HHHHhcccCCCCEEEEECHH
Confidence 34556666 587776665544322 11110 0135555 99999999985
No 241
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.67 E-value=50 Score=26.82 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=11.2
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 173 ~~~DGlivsTpt 184 (295)
T PRK01231 173 QRSDGLIVSTPT 184 (295)
T ss_pred EEcceEEEeCCC
Confidence 689999999998
No 242
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.61 E-value=4.3e+02 Score=21.30 Aligned_cols=62 Identities=24% Similarity=0.295 Sum_probs=38.6
Q ss_pred CCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecCCCCCCCCHHHHHHH
Q 029532 95 AGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELEQA 174 (192)
Q Consensus 95 ~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~ 174 (192)
..+++++|=|+ - || ...++++...|-...+.+++..- ..|||. .+.++-++..
T Consensus 4 ~~~~IgvFDSG--V-GG-LsVlrei~~~LP~e~~iY~~D~a--------------~~PYG~---------ks~e~I~~~~ 56 (269)
T COG0796 4 PQPPIGVFDSG--V-GG-LSVLREIRRQLPDEDIIYVGDTA--------------RFPYGE---------KSEEEIRERT 56 (269)
T ss_pred cCCeEEEEECC--C-Cc-HHHHHHHHHHCCCCcEEEEecCC--------------CCCCCC---------CCHHHHHHHH
Confidence 45788888663 1 23 45677888888788888887632 346664 3444455555
Q ss_pred HHHHHHHHH
Q 029532 175 FHQGKHIAG 183 (192)
Q Consensus 175 ~~lg~~la~ 183 (192)
.++...|.+
T Consensus 57 ~~i~~~l~~ 65 (269)
T COG0796 57 LEIVDFLLE 65 (269)
T ss_pred HHHHHHHHH
Confidence 555555543
No 243
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.57 E-value=6.3e+02 Score=23.15 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh-hhCCEEEEeccccCCCchHHHHH
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL-AEADGFVFGFPTRFGMMAAQFKA 80 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aD~ii~gsP~y~g~~~~~~k~ 80 (192)
+|+.-..|..+++.|++ .|++++++|+....|-+. .....+ .....||..==-.-|++...+..
T Consensus 552 ~G~~v~~Al~AA~~L~~-~GI~v~VId~rsikPlD~--------------~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va~ 616 (641)
T PLN02234 552 YGSAVQRCLEAASMLSE-RGLKITVADARFCKPLDV--------------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQ 616 (641)
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEecCCcCCCCH--------------HHHHHHHHhCCEEEEECCCCCCcHHHHHHH
Confidence 57777788888888877 699999999986533110 012333 34555554422223888888888
Q ss_pred HHHhh
Q 029532 81 FLDAT 85 (192)
Q Consensus 81 fld~~ 85 (192)
++-..
T Consensus 617 ~l~e~ 621 (641)
T PLN02234 617 FLALD 621 (641)
T ss_pred HHHHc
Confidence 88664
No 244
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=21.57 E-value=2.5e+02 Score=20.96 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=29.3
Q ss_pred hhHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCC
Q 029532 54 PNELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQG 109 (192)
Q Consensus 54 ~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~ 109 (192)
...-++||.+++.-|+- -.+.+.++...|.+ -.-|.+..++++..++
T Consensus 65 ~aSPRhADvLlVtG~vT-~km~~~l~~~yeqm--------PePK~VIA~G~CA~sG 111 (173)
T PRK14818 65 RASPRQADFMIVAGTLT-YKMAERARLLYDQM--------PEPKYVISMGSCSNCG 111 (173)
T ss_pred cCCcccccEEEEeCcCc-cccHHHHHHHHHhC--------CCCCEEEEeccccccC
Confidence 45678889888876553 33334444444443 3568888888876553
No 245
>PRK05665 amidotransferase; Provisional
Probab=21.35 E-value=4e+02 Score=20.78 Aligned_cols=25 Identities=4% Similarity=-0.091 Sum_probs=14.3
Q ss_pred hHhhhCCEEEEe-ccccCCCchHHHH
Q 029532 55 NELAEADGFVFG-FPTRFGMMAAQFK 79 (192)
Q Consensus 55 ~~l~~aD~ii~g-sP~y~g~~~~~~k 79 (192)
.++.++|+||+. +|---+.-.+.+.
T Consensus 53 ~~~~~~dgiiitGs~~~v~~~~pwi~ 78 (240)
T PRK05665 53 ADDEKFDAYLVTGSKADSFGTDPWIQ 78 (240)
T ss_pred CCcccCCEEEECCCCCCccccchHHH
Confidence 356679998875 6554333334433
No 246
>PRK00758 GMP synthase subunit A; Validated
Probab=21.30 E-value=2.9e+02 Score=20.23 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhC-CEEEEe-cc
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEA-DGFVFG-FP 68 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-D~ii~g-sP 68 (192)
++|+.+++.+ ++ .|+++.+++... ..+++.++ |+||+. +|
T Consensus 10 ~~~~~i~~~l----~~-~g~~~~~~~~~~---------------------~~~~l~~~~dgivi~Gg~ 51 (184)
T PRK00758 10 QYNHLIHRTL----RY-LGVDAKIIPNTT---------------------PVEEIKAFEDGLILSGGP 51 (184)
T ss_pred chHHHHHHHH----HH-cCCcEEEEECCC---------------------CHHHHhhcCCEEEECCCC
Confidence 4566665544 33 377777776332 13567777 987775 55
No 247
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=21.26 E-value=23 Score=26.63 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHhccccCCceeEEEEcCCCC-CHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCch
Q 029532 3 GHVEKLAEEIKKGASSVEGVEAKLWQVPETL-PEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMA 75 (192)
Q Consensus 3 GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~ 75 (192)
-+|=+|..++++.+.. .|++|.++.=.... ++..+....-...+++.+...+.+.++|.+|..+-+=-+.+.
T Consensus 26 ~SSG~~G~~lA~~~~~-~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf~p~ 98 (185)
T PF04127_consen 26 RSSGKMGAALAEEAAR-RGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDFRPE 98 (185)
T ss_dssp S--SHHHHHHHHHHHH-TT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SEEES
T ss_pred CCcCHHHHHHHHHHHH-CCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchhheeeh
Confidence 4566788889999888 59999998855321 111110000000011211224567789999999877655554
No 248
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.14 E-value=4.5e+02 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhccccCCceeEEEEcCCC
Q 029532 5 VEKLAEEIKKGASSVEGVEAKLWQVPET 32 (192)
Q Consensus 5 T~~la~~i~~~l~~~~g~ev~~~~l~~~ 32 (192)
+...++...+..++ -|++++++++++.
T Consensus 46 s~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 72 (284)
T PRK14179 46 SQVYVRNKERSALA-AGFKSEVVRLPET 72 (284)
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 34456666666777 4888888888764
No 249
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=21.12 E-value=6.2e+02 Score=24.25 Aligned_cols=115 Identities=15% Similarity=0.057 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh---hhCCEEEEeccccCCCch---
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL---AEADGFVFGFPTRFGMMA--- 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~aD~ii~gsP~y~g~~~--- 75 (192)
.|..++|.+.|.+..+. . ..+++-+...-..+.+ .||+... ..++ .....|.+-||-|-|+..
T Consensus 94 fGG~~kL~~aI~~~~~~-~--~P~~I~V~tTC~~elI-------GDDi~~v-~~~~~~~~~~pvi~v~tpGF~gs~~~G~ 162 (917)
T PRK14477 94 FGGEKKLYRAILELAER-Y--QPKAVFVYATCVTALT-------GDDVEAV-CKAAAEKVGIPVIPVNTPGFIGDKNIGN 162 (917)
T ss_pred eCcHHHHHHHHHHHHHh-c--CCCEEEEECCchHHHh-------ccCHHHH-HHHHHHhhCCcEEEEECCCccCchhhHH
Confidence 47778888888887765 2 2334443332111121 1333211 1222 356788888999987654
Q ss_pred -HHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 76 -AQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 -~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
..++.+++.+........-..+.+-+++.+.+. +. +..+...|...|+.++.
T Consensus 163 ~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~-gd----~~elk~lL~~~Gi~v~~ 215 (917)
T PRK14477 163 RLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIA-GD----LWGMLPLFDRLGIRVLS 215 (917)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCc-ch----HHHHHHHHHHcCCeEEE
Confidence 445666666532110112234567777765443 22 33677778889999864
No 250
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.05 E-value=5.2e+02 Score=22.00 Aligned_cols=118 Identities=19% Similarity=0.105 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh--hhCCEEEEeccccCCCch-H--
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL--AEADGFVFGFPTRFGMMA-A-- 76 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~aD~ii~gsP~y~g~~~-~-- 76 (192)
.|..++|.+.|.+..+.. ..+++-+...-..+.+ .||+.. ...++ ...+.|.+-||-|.++.. +
T Consensus 68 ~Gg~~kL~~~I~~~~~~~---~p~~I~V~ttC~~~~I-------GdDi~~-v~~~~~~~~~~vi~v~t~gf~g~~~~G~~ 136 (427)
T cd01971 68 FGGEDRLRELIKSTLSII---DADLFVVLTGCIAEII-------GDDVGA-VVSEFQEGGAPIVYLETGGFKGNNYAGHE 136 (427)
T ss_pred eCCHHHHHHHHHHHHHhC---CCCEEEEEcCCcHHHh-------hcCHHH-HHHHhhhcCCCEEEEECCCcCcccccHHH
Confidence 466778888888876541 2333333321111111 133221 12233 346889999999987653 3
Q ss_pred -HHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 77 -QFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 77 -~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
.++.+++.+... ...-..+.+-+++.+.........-+..+...|...|+.+..
T Consensus 137 ~a~~al~~~~~~~--~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 137 IVLKAIIDQYVGQ--SEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred HHHHHHHHHhccC--CCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 356666655311 001233456666643111100011234688888899998854
No 251
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.03 E-value=5.3e+02 Score=22.02 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHh------hhCCEEEEeccccCCCch
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNEL------AEADGFVFGFPTRFGMMA 75 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~aD~ii~gsP~y~g~~~ 75 (192)
.|..++|.++|.+..+.. +.+++-+-..-..+.+ .||+... .+++ .....|-+-||-|.++..
T Consensus 66 fGg~~kL~~aI~~~~~~~---~P~~I~V~ttc~~~ii-------GdDi~~v-~~~~~~~~~~~~~~vi~v~t~gF~g~~~ 134 (429)
T cd03466 66 YGGEKNLKKGLKNVIEQY---NPEVIGIATTCLSETI-------GEDVPRI-IREFREEVDDSEPKIIPASTPGYGGTHV 134 (429)
T ss_pred ECcHHHHHHHHHHHHHhc---CCCEEEEeCCchHHHh-------hcCHHHH-HHHHhhcccCCCCcEEEEECCCCcccHH
Confidence 467788888888877652 2333333221011111 1332211 1222 345678888999987765
Q ss_pred HH----HHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEec
Q 029532 76 AQ----FKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVP 132 (192)
Q Consensus 76 ~~----~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 132 (192)
.- ++.+++++.. ..-+.+.+-+++.+-+ ..-+..+...|...|+.++-
T Consensus 135 ~G~~~a~~al~~~~~~----~~~~~~~VNlig~~~~-----~~D~~ei~~lL~~~Gl~~~~ 186 (429)
T cd03466 135 EGYDTAVRSIVKNIAV----DPDKIEKINVIAGMMS-----PADIREIKEILREFGIEYIL 186 (429)
T ss_pred HHHHHHHHHHHHHhcc----CCCCCCcEEEECCCCC-----hhHHHHHHHHHHHcCCCeEE
Confidence 33 4444444421 1112344555543311 12255788889999999853
No 252
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.99 E-value=56 Score=25.85 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=10.4
Q ss_pred hCCEEEEeccc
Q 029532 59 EADGFVFGFPT 69 (192)
Q Consensus 59 ~aD~ii~gsP~ 69 (192)
.+|+||++||+
T Consensus 133 ~gDGlIVSTPt 143 (246)
T PRK04761 133 VCDGVLVATPA 143 (246)
T ss_pred ecCeEEEeCCc
Confidence 69999999998
No 253
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=20.98 E-value=92 Score=26.61 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHhccccCCceeEEEEcCC
Q 029532 1 MYGHVEKLAEEIKKGASSVEGVEAKLWQVPE 31 (192)
Q Consensus 1 ~~GnT~~la~~i~~~l~~~~g~ev~~~~l~~ 31 (192)
|.|.|...++.+.+.|++ .|.||-+|+...
T Consensus 192 mfGvTTp~V~~~~~~Le~-~G~Ev~VFHAtG 221 (403)
T PF06792_consen 192 MFGVTTPCVDAIRERLEE-EGYEVLVFHATG 221 (403)
T ss_pred CCCCcHHHHHHHHHHHHh-cCCeEEEEcCCC
Confidence 679999999999999999 699999998765
No 254
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=20.94 E-value=1.6e+02 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=28.9
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGG 110 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g 110 (192)
..-++||.+|+. |.++-.|+..+.++. +..-+-|.+..++++...+|
T Consensus 77 ~sPRhADvllVt-----G~VT~~m~~~l~~~~----e~~p~pK~VIAvGsCA~~GG 123 (182)
T PRK14816 77 ASPRQADMIMVC-----GTITNKMAPVLKRLY----DQMADPKYVIAVGGCAVSGG 123 (182)
T ss_pred CCCCcceEEEEe-----cCCcchhHHHHHHHH----HhcCCCCEEEEeccccccCC
Confidence 445668887775 444555555565654 12235688888888866543
No 255
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.90 E-value=2.9e+02 Score=18.88 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccccCCceeEEEEcCCCCCHH-HhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCC
Q 029532 6 EKLAEEIKKGASSVEGVEAKLWQVPETLPEE-VLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGM 73 (192)
Q Consensus 6 ~~la~~i~~~l~~~~g~ev~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~ 73 (192)
..-++...+.+++ -|++++.+.+++....+ +.... ....+=.+-|||++-.|..-+-
T Consensus 44 ~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~i----------~~lN~D~~V~GIlvq~PLP~~i 101 (117)
T PF00763_consen 44 ISYVRSKQKAAEK-LGIEFELIELPEDISEEELLELI----------EKLNEDPSVHGILVQLPLPKHI 101 (117)
T ss_dssp HHHHHHHHHHHHH-HT-EEEEEEE-TTSSHHHHHHHH----------HHHHH-TT-SEEEEESSSSTTS
T ss_pred HHHHHHHHHHHHH-cCCceEEEECCCCcCHHHHHHHH----------HHHhCCCCCCEEEEcCCCCCCc
Confidence 3445556666666 48888888886543322 21100 0012233458999999996443
No 256
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=20.80 E-value=4.8e+02 Score=21.48 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCCEEecCCccCCCCccccccccCCCCCccceecCCCCCCCCHHHHH
Q 029532 93 QLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTFAGDGSRQPTELELE 172 (192)
Q Consensus 93 ~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 172 (192)
.++|++++.++-+ ... ...+.......||.+.-.. | . ...|+++-++
T Consensus 150 ~l~g~k~a~vGDg----NNv---~nSl~~~~a~~G~dv~ia~-----P--------------------k-~~~p~~~~~~ 196 (310)
T COG0078 150 SLKGLKLAYVGDG----NNV---ANSLLLAAAKLGMDVRIAT-----P--------------------K-GYEPDPEVVE 196 (310)
T ss_pred cccCcEEEEEcCc----chH---HHHHHHHHHHhCCeEEEEC-----C--------------------C-cCCcCHHHHH
Confidence 4899999877653 122 2245445567787764210 0 1 1368888888
Q ss_pred HHHHHHH
Q 029532 173 QAFHQGK 179 (192)
Q Consensus 173 ~~~~lg~ 179 (192)
.|+++++
T Consensus 197 ~a~~~a~ 203 (310)
T COG0078 197 KAKENAK 203 (310)
T ss_pred HHHHHHH
Confidence 8888765
No 257
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=20.78 E-value=53 Score=26.58 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=11.0
Q ss_pred hhCCEEEEeccc
Q 029532 58 AEADGFVFGFPT 69 (192)
Q Consensus 58 ~~aD~ii~gsP~ 69 (192)
..+|+||++||+
T Consensus 174 ~~gDGlIVsTPt 185 (291)
T PRK02155 174 QRSDGLIVATPT 185 (291)
T ss_pred EecCeEEEECCC
Confidence 489999999998
No 258
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.73 E-value=1.9e+02 Score=23.19 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=22.9
Q ss_pred hhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 58 AEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 58 ~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
..+|++++..|.|+..-...+..++..+.
T Consensus 98 ~Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 98 LGYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred cCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 45799999999998766677777777764
No 259
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=20.54 E-value=2.3e+02 Score=23.84 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhccccCCceeEEEEcCCCC
Q 029532 2 YGHVEKLAEEIKKGASSVEGVEAKLWQVPETL 33 (192)
Q Consensus 2 ~GnT~~la~~i~~~l~~~~g~ev~~~~l~~~~ 33 (192)
+|++...+..+.+.+++ .|..+.++++....
T Consensus 281 ~Gs~~~~a~eAv~~Lr~-~G~~v~~l~~~~l~ 311 (376)
T PRK08659 281 YGSVARSARRAVKEARE-EGIKVGLFRLITVW 311 (376)
T ss_pred eCccHHHHHHHHHHHHh-cCCceEEEEeCeec
Confidence 57777888888888877 58888888887653
No 260
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.40 E-value=3.2e+02 Score=19.24 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHhccccCCceeEEEEcCCCCCHHHhcccCCCCCCCCCCCChhHhhhCCEEEEeccccCCCchHHHHHHHHhhc
Q 029532 10 EEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPIITPNELAEADGFVFGFPTRFGMMAAQFKAFLDATG 86 (192)
Q Consensus 10 ~~i~~~l~~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~ 86 (192)
+.++..+++ .|.+ ++++.-..+.+.+ .+...+.|+=+++-....++--..|+..++.+.
T Consensus 17 niv~~~L~~-~Gfe--VidLG~~v~~e~~---------------v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 17 KILDHAFTE-AGFN--VVNLGVLSPQEEF---------------IDAAIETDADAILVSSLYGHGEIDCKGLREKCD 75 (128)
T ss_pred HHHHHHHHH-CCCE--EEECCCCCCHHHH---------------HHHHHHcCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 344555666 5755 6677655443332 366666666666666677777789999999985
No 261
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.34 E-value=3.7e+02 Score=23.79 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=19.9
Q ss_pred CCCHHHHH--HHHHHHhccccCCceeEEE
Q 029532 1 MYGHVEKL--AEEIKKGASSVEGVEAKLW 27 (192)
Q Consensus 1 ~~GnT~~l--a~~i~~~l~~~~g~ev~~~ 27 (192)
|+|.|.++ ++.+.+.|++ .|++..+-
T Consensus 1 ~~~~~~~~~~~~~l~~~L~~-~Gv~~vFg 28 (561)
T PRK06048 1 MTGSTEKMTGARAIIKCLEK-EGVEVIFG 28 (561)
T ss_pred CCCccccccHHHHHHHHHHH-cCCCEEEE
Confidence 67777766 8999999998 58775443
No 262
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.27 E-value=3.9e+02 Score=20.23 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=43.8
Q ss_pred hHhhhCCEEEEeccccCCCchHHHHHHHHhhccccccCCCCCCcEEEEEecCCCCCChHHHHHHHHHHHHHcCC-EEecC
Q 029532 55 NELAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGMFYSTGSQGGGQETTALTAITQLVHHGM-IFVPI 133 (192)
Q Consensus 55 ~~l~~aD~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~s~g~~~g~~~~~l~~~~~~l~~~g~-~vv~~ 133 (192)
.++.+.|+|++|-- ++++..+...++++. -.||.++-+.+- .++..+.+.|..+|+ .++-.
T Consensus 98 ~~~~~~daiFIGGg---~~i~~ile~~~~~l~-------~ggrlV~naitl--------E~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 98 PDLPSPDAIFIGGG---GNIEEILEAAWERLK-------PGGRLVANAITL--------ETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred cCCCCCCEEEECCC---CCHHHHHHHHHHHcC-------cCCeEEEEeecH--------HHHHHHHHHHHHcCCceEEEE
Confidence 46668999999976 788888888888873 356666555442 234456667788888 66654
Q ss_pred Cc
Q 029532 134 GY 135 (192)
Q Consensus 134 ~~ 135 (192)
.+
T Consensus 160 ~i 161 (187)
T COG2242 160 QI 161 (187)
T ss_pred Ee
Confidence 43
Done!