BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029533
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 81  GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
           G I N   L+ +YG     +T ++  +++  Y+   ++GP    + + D+QG FAF LYD
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 127

Query: 138 SSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
           S      +  D  G +P + G D  G L ++ +++ +   C ++   FP G Y
Sbjct: 128 SEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 179


>pdb|1FX5|A Chain A, Crystal Structure Analysis Of Ulex Europaeus Lectin I
 pdb|1FX5|B Chain B, Crystal Structure Analysis Of Ulex Europaeus Lectin I
 pdb|1JXN|A Chain A, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|B Chain B, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|C Chain C, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
 pdb|1JXN|D Chain D, Crystal Structure Of The Lectin I From Ulex Europaeus In
           Complex With The Methyl Glycoside Of Alpha-l-fucose
          Length = 242

 Score = 30.8 bits (68), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 85  NVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQV 123
           N     ++YGLN  AN  II   + +TL     YP+DQ 
Sbjct: 154 NAERWNKRYGLNNVANVEIIYEASSKTLTASLTYPSDQT 192


>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
 pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
 pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
           Escherichia Coli Complexed With Aspartate
 pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
           Escherichia Coli Complexed With Aspartate
 pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
 pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
 pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
 pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
 pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
 pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
          Length = 390

 Score = 27.3 bits (59), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 49  GSSGVIAYSLNRQNPLLPRLFAVVDD----IFCLFQGHI-ENVALLKQQYGLNKTANEVI 103
           G  GV  + +      L  ++ ++++    I  L   H+  NV L +Q     +    + 
Sbjct: 193 GKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTID 252

Query: 104 IVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEG 163
           I      +  D    PA+ + R +Q                L+SD +GS PFF   D EG
Sbjct: 253 IT-----SSIDEPVAPAEGIARAVQAGIPL-------ARVTLSSDGNGSQPFF---DDEG 297

Query: 164 HL 165
           +L
Sbjct: 298 NL 299


>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant Y137f
 pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant Y137f
          Length = 390

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 49  GSSGVIAYSLNRQNPLLPRLFAVVDD----IFCLFQGHI-ENVALLKQQYGLNKTANEVI 103
           G  GV  + +      L  ++ ++++    I  L   H+  NV L +Q     +    + 
Sbjct: 193 GKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTID 252

Query: 104 IVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEG 163
           I      +  D    PA+ + R +Q                L+SD +GS PFF   D EG
Sbjct: 253 IT-----SSIDEPVAPAEGIARAVQAGIPL-------ARVTLSSDGNGSQPFF---DDEG 297

Query: 164 HL 165
           +L
Sbjct: 298 NL 299


>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant E77q
 pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
           Mutant E77q
          Length = 390

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 49  GSSGVIAYSLNRQNPLLPRLFAVVDD----IFCLFQGHI-ENVALLKQQYGLNKTANEVI 103
           G  GV  + +      L  ++ ++++    I  L   H+  NV L +Q     +    + 
Sbjct: 193 GKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTID 252

Query: 104 IVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEG 163
           I      +  D    PA+ + R +Q                L+SD +GS PFF   D EG
Sbjct: 253 IT-----SSIDEPVAPAEGIARAVQAGIPL-------ARVTLSSDGNGSQPFF---DDEG 297

Query: 164 HL 165
           +L
Sbjct: 298 NL 299


>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
          Length = 350

 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 123 VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSE 162
           VV       +F+L D +      ASD  G  P  WG+D E
Sbjct: 156 VVDPTDRSISFLLGDGAGAVIVAASDEPGISPSVWGSDGE 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,711,394
Number of Sequences: 62578
Number of extensions: 222795
Number of successful extensions: 481
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 10
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)