Query 029533
Match_columns 192
No_of_seqs 180 out of 1496
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 14:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 1.3E-44 2.8E-49 293.3 20.8 190 2-192 1-190 (224)
2 PLN02549 asparagine synthase ( 100.0 5.4E-38 1.2E-42 287.1 18.9 157 25-192 17-181 (578)
3 PRK09431 asnB asparagine synth 100.0 6.4E-38 1.4E-42 285.8 18.8 155 26-191 18-181 (554)
4 PF12481 DUF3700: Aluminium in 100.0 7.4E-38 1.6E-42 250.3 16.2 191 2-192 1-194 (228)
5 PTZ00077 asparagine synthetase 100.0 1.1E-37 2.4E-42 285.5 19.1 155 27-191 19-188 (586)
6 COG0367 AsnB Asparagine syntha 100.0 5.7E-36 1.2E-40 272.3 15.1 155 26-192 17-186 (542)
7 cd00712 AsnB Glutamine amidotr 100.0 7.8E-35 1.7E-39 237.6 18.5 157 24-191 14-206 (220)
8 TIGR01536 asn_synth_AEB aspara 100.0 7.8E-35 1.7E-39 261.0 18.3 155 26-191 15-207 (467)
9 TIGR03104 trio_amidotrans aspa 100.0 1.4E-34 3E-39 265.9 17.9 141 25-176 16-167 (589)
10 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.1E-33 2.4E-38 225.0 14.6 155 26-191 18-181 (181)
11 TIGR03108 eps_aminotran_1 exos 100.0 2.7E-33 5.9E-38 259.0 17.7 157 25-191 17-209 (628)
12 PRK08525 amidophosphoribosyltr 100.0 6.9E-32 1.5E-36 240.5 19.7 164 26-191 14-216 (445)
13 PRK07631 amidophosphoribosyltr 100.0 2.4E-31 5.2E-36 237.9 19.0 163 26-191 24-225 (475)
14 cd00714 GFAT Glutamine amidotr 100.0 4.2E-31 9.2E-36 215.3 18.7 157 27-191 14-213 (215)
15 PRK06388 amidophosphoribosyltr 100.0 5.6E-31 1.2E-35 235.7 19.1 164 25-191 31-233 (474)
16 KOG0571 Asparagine synthase (g 100.0 2.3E-32 5E-37 236.2 9.7 157 26-192 17-181 (543)
17 PRK07272 amidophosphoribosyltr 100.0 1.7E-30 3.6E-35 233.0 19.6 165 25-191 23-227 (484)
18 PRK08341 amidophosphoribosyltr 100.0 3.7E-30 8E-35 228.8 19.5 162 25-191 15-214 (442)
19 PRK07349 amidophosphoribosyltr 100.0 3.6E-30 7.8E-35 231.4 19.3 164 26-191 47-254 (500)
20 PRK06781 amidophosphoribosyltr 100.0 4.2E-30 9.1E-35 230.0 19.5 163 26-191 24-225 (471)
21 PLN02440 amidophosphoribosyltr 100.0 5.2E-30 1.1E-34 230.2 19.1 164 26-191 14-216 (479)
22 PRK09246 amidophosphoribosyltr 100.0 4.9E-30 1.1E-34 231.6 18.8 162 27-191 15-229 (501)
23 cd01907 GlxB Glutamine amidotr 100.0 5.6E-30 1.2E-34 213.0 17.7 162 25-192 15-248 (249)
24 PRK09123 amidophosphoribosyltr 100.0 8.9E-30 1.9E-34 228.4 19.4 164 25-191 33-236 (479)
25 PRK07847 amidophosphoribosyltr 100.0 1.9E-29 4.2E-34 227.2 19.5 163 27-192 38-246 (510)
26 cd00715 GPATase_N Glutamine am 100.0 2.5E-29 5.3E-34 209.3 17.8 165 26-192 13-217 (252)
27 cd01909 betaLS_CarA_N Glutamin 100.0 1.5E-29 3.3E-34 203.5 15.0 111 71-191 48-179 (199)
28 PRK05793 amidophosphoribosyltr 100.0 5.1E-29 1.1E-33 223.3 18.1 163 26-191 29-230 (469)
29 PRK00331 glucosamine--fructose 100.0 1E-28 2.2E-33 227.7 19.2 158 26-191 14-214 (604)
30 TIGR01134 purF amidophosphorib 100.0 1E-28 2.2E-33 220.2 18.3 162 25-191 13-216 (442)
31 TIGR01135 glmS glucosamine--fr 100.0 9.5E-29 2E-33 228.0 18.0 157 27-191 14-213 (607)
32 cd00352 Gn_AT_II Glutamine ami 100.0 2.4E-28 5.2E-33 197.2 16.5 159 30-191 21-220 (220)
33 PF13537 GATase_7: Glutamine a 100.0 4.4E-29 9.5E-34 187.2 10.7 115 58-176 1-125 (125)
34 PTZ00295 glucosamine-fructose- 99.9 1.1E-26 2.4E-31 215.5 18.1 161 25-191 36-244 (640)
35 PF13522 GATase_6: Glutamine a 99.9 1.5E-25 3.3E-30 169.9 12.7 119 41-170 1-133 (133)
36 COG0034 PurF Glutamine phospho 99.9 3.3E-25 7.1E-30 193.8 16.5 164 26-191 19-223 (470)
37 PLN02981 glucosamine:fructose- 99.9 6E-24 1.3E-28 198.3 16.3 163 25-191 19-266 (680)
38 PTZ00394 glucosamine-fructose- 99.9 3.4E-23 7.4E-28 192.8 17.1 162 25-191 19-269 (670)
39 KOG0572 Glutamine phosphoribos 99.9 4.9E-23 1.1E-27 176.2 14.0 160 30-191 20-230 (474)
40 COG0449 GlmS Glucosamine 6-pho 99.9 1.1E-21 2.3E-26 178.0 14.6 158 26-191 15-211 (597)
41 cd00713 GltS Glutamine amidotr 99.7 4E-17 8.8E-22 143.6 14.8 130 52-191 201-390 (413)
42 cd01908 YafJ Glutamine amidotr 99.7 1.2E-15 2.6E-20 127.4 12.5 130 51-192 81-253 (257)
43 KOG0573 Asparagine synthase [A 99.6 7.9E-15 1.7E-19 128.3 12.1 151 23-188 14-171 (520)
44 TIGR03442 conserved hypothetic 99.6 1.6E-14 3.5E-19 120.4 12.8 121 58-192 88-240 (251)
45 PF00310 GATase_2: Glutamine a 99.5 1.2E-13 2.6E-18 120.5 12.5 110 51-171 196-361 (361)
46 KOG1268 Glucosamine 6-phosphat 99.5 1.3E-13 2.9E-18 122.5 8.5 134 23-159 17-202 (670)
47 PRK11750 gltB glutamate syntha 99.3 3.7E-11 8.1E-16 118.2 13.4 131 52-191 212-400 (1485)
48 PF13230 GATase_4: Glutamine a 98.3 1.2E-05 2.5E-10 68.0 10.8 130 56-192 75-247 (271)
49 PF09147 DUF1933: Domain of un 98.2 1.1E-05 2.4E-10 63.4 9.6 94 71-174 45-142 (201)
50 COG0067 GltB Glutamate synthas 98.0 3.9E-05 8.4E-10 67.1 9.3 120 52-179 202-349 (371)
51 COG0121 Predicted glutamine am 95.0 0.21 4.6E-06 41.8 9.0 51 52-105 72-132 (252)
52 KOG0399 Glutamate synthase [Am 90.5 1.8 3.9E-05 43.7 9.1 50 123-174 406-455 (2142)
53 PF04566 RNA_pol_Rpb2_4: RNA p 58.1 13 0.00029 24.2 2.9 25 133-158 35-61 (63)
54 PF08973 TM1506: Domain of unk 44.7 7.9 0.00017 29.3 0.2 27 128-157 10-36 (134)
55 COG0067 GltB Glutamate synthas 42.5 16 0.00035 32.4 1.8 49 122-172 322-370 (371)
56 TIGR03823 FliZ flagellar regul 36.0 25 0.00053 27.4 1.7 19 73-91 33-51 (168)
57 PRK11582 flagella biosynthesis 35.5 26 0.00055 27.4 1.7 19 73-91 33-51 (169)
58 COG4911 Uncharacterized conser 31.3 49 0.0011 24.2 2.5 25 119-143 73-97 (123)
59 PF06339 Ectoine_synth: Ectoin 28.1 67 0.0014 24.1 2.8 13 140-152 23-35 (126)
60 PF12594 DUF3764: Protein of u 27.3 28 0.0006 24.4 0.6 19 145-163 28-46 (86)
61 PF04641 Rtf2: Rtf2 RING-finge 23.9 57 0.0012 27.2 2.1 20 74-93 47-66 (260)
62 PRK07225 DNA-directed RNA poly 23.0 2.5E+02 0.0055 26.6 6.3 61 76-159 6-68 (605)
63 KOG0876 Manganese superoxide d 22.2 4.6E+02 0.01 21.8 7.1 82 76-159 92-182 (234)
64 cd08785 CARD_CARD9-like Caspas 20.6 75 0.0016 22.1 1.8 29 18-46 41-69 (86)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=1.3e-44 Score=293.34 Aligned_cols=190 Identities=62% Similarity=1.050 Sum_probs=170.3
Q ss_pred eeeeccccccCCcccCCCCCCchhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccCCCceeeeCCcEEEEEEE
Q 029533 2 LAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQG 81 (192)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~qP~~~~~~~~~~lv~nG 81 (192)
|++|+|.||++||+++++++.+. +..-.++++.+....|+...+.+++.++|+++|...+..+|.+++.++++++++||
T Consensus 1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG 79 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG 79 (224)
T ss_pred CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence 78999999999999998875443 33446799999999999888888888999999988888888878888899999999
Q ss_pred EEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec
Q 029533 82 HIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS 161 (192)
Q Consensus 82 ~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~ 161 (192)
+|||+.+|+++|+..++.+|+|+|+++|+++.++|+++..+++++|+|+|||+|||++++++++|||++|++||||+.+.
T Consensus 80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~ 159 (224)
T cd01910 80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA 159 (224)
T ss_pred EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence 99999999999987778899999999999865666666668999999999999999999999999999999999999866
Q ss_pred CCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533 162 EGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 162 ~~~~~faSe~~al~~~~~~~~~~~ppG~~~~ 192 (192)
+|.++||||+++|...|.+.+.+|||||||+
T Consensus 160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~ 190 (224)
T cd01910 160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFH 190 (224)
T ss_pred CCEEEEEeCHHHhhhhhccEEEEECCCCEEe
Confidence 7899999999999999977899999999985
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=5.4e-38 Score=287.09 Aligned_cols=157 Identities=19% Similarity=0.303 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-C-C
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-L-N 96 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-~-~ 96 (192)
....+.+|++.|+|||||+.+++..+..+|+ |+|++++ ||+ ++.++++++++||+|||+.+|+++|. . +
T Consensus 17 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lg--h~RLsI~d~~~g~QP~-~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f 93 (578)
T PLN02549 17 KRSRVLELSRRLRHRGPDWSGLYGNEDCYLA--HERLAIMDPESGDQPL-YNEDKTIVVTANGEIYNHKELREKLKLHKF 93 (578)
T ss_pred hHHHHHHHHHHhcCcCCCccCEEEeCCeEEE--EeeeeEeCCCCCCCCc-CcCCCCEEEEEEEEEEcHHHHHHHHHhCCC
Confidence 3457889999999999999999998888888 9999864 998 56678899999999999999999986 3 8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533 97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (192)
Q Consensus 97 ~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~ 176 (192)
++.+|+|+|+++|++ ||. +++++|+|+|||++||..++++++||||+|+|||||+.+.++.++||||+++|..
T Consensus 94 ~t~sD~Evil~ly~~------~G~-~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~ 166 (578)
T PLN02549 94 RTGSDCEVIAHLYEE------HGE-EFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCD 166 (578)
T ss_pred CCCCHHHHHHHHHHH------HHH-HHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHH
Confidence 899999999999998 786 7999999999999999989999999999999999999865678999999999998
Q ss_pred ccCceeEEeCCCeeeC
Q 029533 177 GCGKSFAPFPKGIYEI 192 (192)
Q Consensus 177 ~~~~~~~~~ppG~~~~ 192 (192)
.|. .+.+|||||++.
T Consensus 167 ~~~-~I~~lpPGh~l~ 181 (578)
T PLN02549 167 DCE-RFEEFPPGHYYS 181 (578)
T ss_pred HhC-CEEEeCCCeEEE
Confidence 874 599999999973
No 3
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=6.4e-38 Score=285.75 Aligned_cols=155 Identities=21% Similarity=0.407 Sum_probs=142.1
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC--C-C
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG--L-N 96 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~--~-~ 96 (192)
...+.+|+++|+|||||+.+++..++++|+ |+|++++ ||+ ++.++++++++||||||+.+|+++|. . +
T Consensus 18 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~lg--h~RLsIid~~~g~QP~-~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f 94 (554)
T PRK09431 18 RKKALEMSRLMRHRGPDWSGIYASDNAILG--HERLSIVDVNGGAQPL-YNEDGTHVLAVNGEIYNHQELRAELGDKYAF 94 (554)
T ss_pred HHHHHHHHHHhhCCCCCcCCEEEeCCeEEE--EEEeeecCCCCCCCCC-CcCCCCEEEEEEEEEecHHHHHHHHhccCCc
Confidence 467889999999999999999998888888 9999965 998 67788999999999999999999985 2 7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533 97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (192)
Q Consensus 97 ~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~ 176 (192)
.+.+|+|+|+++|++ ||. +++++|+|+|||++||..++++++||||+|+|||||+.+.++.++||||+++|..
T Consensus 95 ~t~sD~Evil~ly~~------~G~-~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~ 167 (554)
T PRK09431 95 QTGSDCEVILALYQE------KGP-DFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVP 167 (554)
T ss_pred CCCCHHHHHHHHHHH------HHH-HHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHH
Confidence 899999999999998 887 7999999999999999999999999999999999999864488999999999999
Q ss_pred ccCceeEEeCCCeee
Q 029533 177 GCGKSFAPFPKGIYE 191 (192)
Q Consensus 177 ~~~~~~~~~ppG~~~ 191 (192)
.|. .+..|||||++
T Consensus 168 ~~~-~I~~lpPGh~l 181 (554)
T PRK09431 168 VCK-TIKEFPPGHYY 181 (554)
T ss_pred hcC-CEEEECCCeEE
Confidence 885 59999999987
No 4
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=7.4e-38 Score=250.28 Aligned_cols=191 Identities=58% Similarity=1.002 Sum_probs=180.2
Q ss_pred eeeeccccccCCcccCCCCCC---chhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccCCCceeeeCCcEEEE
Q 029533 2 LAVFDKSVAKAPEALQSPQTE---SACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCL 78 (192)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~qP~~~~~~~~~~lv 78 (192)
|++|+|+||++||++++|.+. +..++...++++.+....|++..+.+++++.|+|+|...+..+|..+..-+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 789999999999999999853 34578889999999999999999999999999999999998889878888899999
Q ss_pred EEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEE
Q 029533 79 FQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWG 158 (192)
Q Consensus 79 ~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~ 158 (192)
|-|.|.|...|+++|++.++.+++.+++++|+.++|+||+...+++++|+|.||||+||..++.+++|||+-|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533 159 TDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 159 ~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~ 192 (192)
.+.||.++||++...|...|++.+.+||+|++|+
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~ 194 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFS 194 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEE
Confidence 9888999999999999999999999999999985
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=285.52 Aligned_cols=155 Identities=19% Similarity=0.338 Sum_probs=139.0
Q ss_pred hHHHHHHHHhHhcCCCCcCeeec-----CCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-
Q 029533 27 LKNGLLANHFSSVHPGSVTVNLG-----SSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG- 94 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~~-----~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~- 94 (192)
..+.+|+++|+|||||+.+++.. +.+.|+ |+|++++ ||+ ++.++++++++||||||+.+|+++|.
T Consensus 19 ~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lg--h~RLsIvd~~~g~QP~-~~~d~~~~lv~NGEIYN~~eLr~~L~~ 95 (586)
T PTZ00077 19 RKALELSKRLRHRGPDWSGIIVLENSPGTYNILA--HERLAIVDLSDGKQPL-LDDDETVALMQNGEIYNHWEIRPELEK 95 (586)
T ss_pred HHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEE--eccceecCCCCCCCCc-CCCCCCEEEEEEEEEcCHHHHHHHHHh
Confidence 46788999999999999999874 456677 9999975 998 67778999999999999999999984
Q ss_pred --C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecc
Q 029533 95 --L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDV 171 (192)
Q Consensus 95 --~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~ 171 (192)
. +.+.+|+|+|+++|++ ||.++++++|+|+|||++||..++++++||||+|+|||||+...++.++||||+
T Consensus 96 ~g~~f~t~sD~Evil~ly~~------~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~ 169 (586)
T PTZ00077 96 EGYKFSSNSDCEIIGHLYKE------YGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSEL 169 (586)
T ss_pred cCCcCCCCCHHHHHHHHHHH------hCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecH
Confidence 3 7899999999999998 885479999999999999999999999999999999999997546789999999
Q ss_pred hhhhhccCceeEEeCCCeee
Q 029533 172 EIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 172 ~al~~~~~~~~~~~ppG~~~ 191 (192)
++|...|. .+.+|||||++
T Consensus 170 kaL~~~~~-~I~~lpPGh~l 188 (586)
T PTZ00077 170 KALHDQCV-EVKQFPPGHYY 188 (586)
T ss_pred HHHHHhcC-CEEEeCCCcEE
Confidence 99998874 59999999997
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-36 Score=272.30 Aligned_cols=155 Identities=17% Similarity=0.330 Sum_probs=141.5
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L- 95 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~- 95 (192)
...+.+|.+.|.|||||..+++...+..++ |.|++++ ||+ ...++++++++||||||+.+|++++. .
T Consensus 17 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~g--h~rL~i~d~~~g~QP~-~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~ 93 (542)
T COG0367 17 KSIIEEMTKLLRHRGPDDSGVWISLNALLG--HRRLSIVDLSGGRQPM-IKEGGKYAIVYNGEIYNVEELRKELREAGYE 93 (542)
T ss_pred hHHHHHHHHHhhccCCCccccEecCCceee--eeEEEEeccccCCCCc-ccCCCcEEEEECCEeeeHHHHHHHHHhcCce
Confidence 668999999999999999999998888888 9999965 998 44567799999999999999999996 3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533 96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175 (192)
Q Consensus 96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~ 175 (192)
|.+.+|+|+|+++|++ ||. +++++|+|+|||++||..+++|+++|||+|+|||||+.+ ++.++||||.++|.
T Consensus 94 f~t~sDtEvil~~y~~------~g~-~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~ 165 (542)
T COG0367 94 FRTYSDTEVILTLYEE------WGE-DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALL 165 (542)
T ss_pred eccccchHHHHHHHHH------HHH-HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhh
Confidence 8999999999999998 886 799999999999999999999999999999999999996 56799999999999
Q ss_pred hc-----cCceeEEeCCCeeeC
Q 029533 176 KG-----CGKSFAPFPKGIYEI 192 (192)
Q Consensus 176 ~~-----~~~~~~~~ppG~~~~ 192 (192)
.. +. .++++|||++++
T Consensus 166 ~~~~~~~~~-~i~~l~pg~~l~ 186 (542)
T COG0367 166 AHPVVRFLR-DIKELPPGHLLE 186 (542)
T ss_pred hCCcccccC-CeEEcCCCcEEE
Confidence 88 64 599999999873
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=7.8e-35 Score=237.55 Aligned_cols=157 Identities=20% Similarity=0.363 Sum_probs=139.0
Q ss_pred hhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeeccccccc------CCCceeeeCCcEEEEEEEEEcChHHHHHHhCC--
Q 029533 24 ACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNP------LLPRLFAVVDDIFCLFQGHIENVALLKQQYGL-- 95 (192)
Q Consensus 24 ~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~------~qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~-- 95 (192)
.....+..|+..|+|||||+.+++..+..+++ |+|+++ .||+ ...++++++++||+|||+.+|+++++.
T Consensus 14 ~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lg--h~rl~~~~~~~~~qP~-~~~~~~~~~~~nG~i~N~~~L~~~l~~~~ 90 (220)
T cd00712 14 VDRATLERMLDALAHRGPDGSGIWIDEGVALG--HRRLSIIDLSGGAQPM-VSEDGRLVLVFNGEIYNYRELRAELEALG 90 (220)
T ss_pred chHHHHHHHHHHHhccCCCCCCEEEECCEEEE--EEeeeecCcccCCCCe-EeCCCCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 45678899999999999999999998888888 999884 3897 455678999999999999999998852
Q ss_pred --CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchh
Q 029533 96 --NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEI 173 (192)
Q Consensus 96 --~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~a 173 (192)
+.+.+|+|+++++|++ ||. +++++|+|+||+++||.++++++++||++|.|||||+.. ++.++||||.++
T Consensus 91 ~~~~~~sD~e~l~~~~~~------~g~-~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~ 162 (220)
T cd00712 91 HRFRTHSDTEVILHLYEE------WGE-DCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKA 162 (220)
T ss_pred CcCCCCChHHHHHHHHHH------HhH-HHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHH
Confidence 6889999999999997 775 899999999999999998999999999999999999996 578999999999
Q ss_pred hhhccC--------------------------ceeEEeCCCeee
Q 029533 174 VKKGCG--------------------------KSFAPFPKGIYE 191 (192)
Q Consensus 174 l~~~~~--------------------------~~~~~~ppG~~~ 191 (192)
|...+. +.++.+||||++
T Consensus 163 l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l 206 (220)
T cd00712 163 LLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYL 206 (220)
T ss_pred HHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEE
Confidence 977543 358999999986
No 8
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=7.8e-35 Score=261.00 Aligned_cols=155 Identities=18% Similarity=0.305 Sum_probs=137.7
Q ss_pred hhHHHHHHHHhHhcCCCCcCee-ecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533 26 ALKNGLLANHFSSVHPGSVTVN-LGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L 95 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~-~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~ 95 (192)
...+.+|+++|+|||||+.++| ..++++|| |+|++++ ||+ .+.++++++++||+|||+.+|+++|. .
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lg--h~rl~i~d~~~~~qP~-~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~ 91 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILG--HRRLAIIDLSGGAQPM-SNEGKTYVIVFNGEIYNHEELREELEAKGY 91 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEE--EEEeEEeCCCCCCCee-ECCCCCEEEEEeeEEcCHHHHHHHHHhcCC
Confidence 4578999999999999999999 88888888 9999864 997 56678899999999999999999984 3
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533 96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (192)
Q Consensus 96 -~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al 174 (192)
+.+.+|+|+++++|++ ||. +++++|+|+|||++||..+++++++||++|+|||||+.+ ++.++||||+++|
T Consensus 92 ~~~~~~D~e~il~~y~~------~g~-~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL 163 (467)
T TIGR01536 92 TFQTDSDTEVILHLYEE------WGE-ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKAL 163 (467)
T ss_pred ccCCCCHHHHHHHHHHH------HHH-HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHH
Confidence 7889999999999998 885 899999999999999999999999999999999999986 6789999999998
Q ss_pred hhcc---------------------------CceeEEeCCCeee
Q 029533 175 KKGC---------------------------GKSFAPFPKGIYE 191 (192)
Q Consensus 175 ~~~~---------------------------~~~~~~~ppG~~~ 191 (192)
...+ .+.++.+|||++.
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l 207 (467)
T TIGR01536 164 LAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDL 207 (467)
T ss_pred HhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEE
Confidence 7643 1347888999975
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1.4e-34 Score=265.91 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=128.4
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC-------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL-------LPRLFAVVDDIFCLFQGHIENVALLKQQYG--- 94 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~-------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~--- 94 (192)
+...+.+|+++|+|||||+.+++..++.+|| |+|++++ ||+ .+.+++++++|||+|||+.+|+++|.
T Consensus 16 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lg--h~rl~i~~~~~~~~QP~-~~~~~~~~~v~nGeiyN~~eL~~~l~~~g 92 (589)
T TIGR03104 16 DVAAVVRMLAVLAPRGPDAGGVHAQGPVALG--HRRLKIIDLSEASQQPM-VDAELGLALVFNGCIYNYRELRAELEALG 92 (589)
T ss_pred hHHHHHHHHHhhcCCCCCcCCcEecCCEEEE--EEeeEecCCCcCCCCCe-ECCCCCEEEEECCEecCHHHHHHHHHhcC
Confidence 4567899999999999999999998888888 9998854 897 56778899999999999999999983
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchh
Q 029533 95 L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEI 173 (192)
Q Consensus 95 ~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~a 173 (192)
. +.+.+|+|+++++|++ ||. +++++|+|+|||++||..+++++++|||+|+|||||+.+ ++.++||||+++
T Consensus 93 ~~f~~~sD~Evil~~y~~------~G~-~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~ka 164 (589)
T TIGR03104 93 YRFFSDGDTEVILKAYHA------WGR-DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPA 164 (589)
T ss_pred CcccCCCHHHHHHHHHHH------HHH-HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHH
Confidence 3 7889999999999998 886 899999999999999999999999999999999999985 578999999999
Q ss_pred hhh
Q 029533 174 VKK 176 (192)
Q Consensus 174 l~~ 176 (192)
|+.
T Consensus 165 Ll~ 167 (589)
T TIGR03104 165 LLA 167 (589)
T ss_pred HHh
Confidence 974
No 10
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=1.1e-33 Score=224.95 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=123.7
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCC--eEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhCCCC
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSS--GVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYGLNK 97 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~--~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~~~ 97 (192)
...+.+|+++|+|||||+.+++..+. ..+.++|+|++++ ||+ ...+++++++|||+|||+.+|++
T Consensus 18 ~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~~l~~------ 90 (181)
T cd03766 18 SLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPL-VDQSTGNVLQWNGELYNIDGVED------ 90 (181)
T ss_pred hhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCC-EeCCCCEEEEECCEEECcccccC------
Confidence 35678999999999999999887532 2344448888854 998 44456899999999999999874
Q ss_pred CCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec-CCeEEEEecchhhhh
Q 029533 98 TANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-EGHLVLSDDVEIVKK 176 (192)
Q Consensus 98 ~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~-~~~~~faSe~~al~~ 176 (192)
+.+|+|+++++|++..+.. .++.+++++|+|+|||++||..+++++++|||+|+|||||+... ++.++|||+.....
T Consensus 91 s~sDtEvi~~l~~~~g~~~-~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~- 168 (181)
T cd03766 91 EENDTEVIFELLANCSSES-QDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS- 168 (181)
T ss_pred CCCHHHHHHHHHHHHhhhH-HHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC-
Confidence 6899999999998721100 13458999999999999999989999999999999999999864 67899999976432
Q ss_pred ccCceeEEeCCCeee
Q 029533 177 GCGKSFAPFPKGIYE 191 (192)
Q Consensus 177 ~~~~~~~~~ppG~~~ 191 (192)
. ....++||+-+|
T Consensus 169 -~-~~~~e~~~~g~~ 181 (181)
T cd03766 169 -G-SGFQEVLAGGIY 181 (181)
T ss_pred -C-CceEECCCCccC
Confidence 1 258999996553
No 11
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=2.7e-33 Score=259.04 Aligned_cols=157 Identities=18% Similarity=0.278 Sum_probs=138.7
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L 95 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~ 95 (192)
+...+.+|+++|.|||||+.+++..++.+|| |+|++++ ||+ .+.+++++++|||+|||+.+|+++|. .
T Consensus 17 ~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lg--h~rl~i~d~~~~~qP~-~~~~~~~~lv~nGei~N~~eL~~~l~~~g~ 93 (628)
T TIGR03108 17 DRDLLRRMNDAQAHRGPDGGGVHVEPGIGLG--HRRLSIIDLSGGQQPL-FNEDGSVVVVFNGEIYNFQELVAELQALGH 93 (628)
T ss_pred cHHHHHHHHHHhcCCCCCccCeEeeCCEEEE--EEeeeecCCCCCCCCc-CcCCCCEEEEECCeECCHHHHHHHHHhcCC
Confidence 4457899999999999999999998888888 9999864 998 56778999999999999999999873 3
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533 96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (192)
Q Consensus 96 -~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al 174 (192)
+.+.+|+|+++++|++ ||. +++++|+|+|||++||+.+++++++||++|+|||||+...++.++||||+++|
T Consensus 94 ~~~~~sD~Evi~~~~~~------~g~-~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al 166 (628)
T TIGR03108 94 VFRTRSDTEVIVHAWEE------WGE-ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKAL 166 (628)
T ss_pred ccCCCChHHHHHHHHHH------HHH-HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHH
Confidence 7889999999999998 886 89999999999999999999999999999999999997545789999999998
Q ss_pred hhcc--------------------------CceeEEeCCCeee
Q 029533 175 KKGC--------------------------GKSFAPFPKGIYE 191 (192)
Q Consensus 175 ~~~~--------------------------~~~~~~~ppG~~~ 191 (192)
.... .+.|+.+||||+.
T Consensus 167 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l 209 (628)
T TIGR03108 167 TAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTL 209 (628)
T ss_pred HhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEE
Confidence 6531 1358999999985
No 12
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.9e-32 Score=240.55 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=132.9
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
...+..|+.+|+|||+|+.|++... .+.++++|+||+++ ||+... .
T Consensus 14 ~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~ 93 (445)
T PRK08525 14 AKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYD 93 (445)
T ss_pred HHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEeecC
Confidence 3566789999999999999986521 11244459999854 998432 4
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
+++++++|||+|||+.+|+++|. . |.+.+|+|+++++|.+..+... .++.+++++|+|+|||+++|+ ++++++
T Consensus 94 ~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~~ 171 (445)
T PRK08525 94 LGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSR--SKMFAI 171 (445)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCceEEEEEeC--CEEEEE
Confidence 67899999999999999999983 3 8899999999999976321110 234579999999999999984 789999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||++|+|||||+..+++.++||||.++|..++.+.+++++||++.
T Consensus 172 RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v 216 (445)
T PRK08525 172 RDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEML 216 (445)
T ss_pred ECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEE
Confidence 999999999999754567999999999988777778999999986
No 13
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.98 E-value=2.4e-31 Score=237.95 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=133.7
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCcee-ee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLF-AV 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~-~~ 71 (192)
...+..++.+|+|||+|+.|+.... .+.++++|+|++++ ||++. +.
T Consensus 24 ~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~ 103 (475)
T PRK07631 24 AQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQ 103 (475)
T ss_pred HHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEeEcC
Confidence 4567789999999999999976411 12244559999754 99853 34
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
+++++++|||+|+|+++|+++|. . |.+.+|+|+++++|.+...... .++.+++++|+|+|||+++|. ++++++
T Consensus 104 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~aa 181 (475)
T PRK07631 104 TGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYVA 181 (475)
T ss_pred CCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEEE
Confidence 67899999999999999999983 3 8899999999999986321110 245679999999999999985 689999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
|||+|+||||||.. ++.++||||.+||..++.+.+++++|||++
T Consensus 182 RDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv 225 (475)
T PRK07631 182 LDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELL 225 (475)
T ss_pred ECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEE
Confidence 99999999999996 568999999999988887789999999986
No 14
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.98 E-value=4.2e-31 Score=215.25 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=130.3
Q ss_pred hHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceeee
Q 029533 27 LKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFAV 71 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~~ 71 (192)
..+..|+.+++|||||+.+++.. +..+|+ |+|+++. ||+ ...
T Consensus 14 ~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qPf-~~~ 90 (215)
T cd00714 14 DILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIG--HTRWATHGEPTDVNAHPH-RSC 90 (215)
T ss_pred HHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEE--EEEccCCCCCCccCCCCC-CcC
Confidence 56789999999999999998764 234455 9999853 998 344
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCCC-CEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA 143 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~~-~~l 143 (192)
+++++++|||+|||+.+|+++|. . +.+.+|+|+++++|.+..+.+. .+++++++.|+|+|||++||+.+ ++|
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l 170 (215)
T cd00714 91 DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEI 170 (215)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEE
Confidence 57899999999999999999983 3 7889999999999986432211 24557999999999999999876 499
Q ss_pred EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+++|| .|||||+.. ++.++||||.++|...+. .+..+.+|++.
T Consensus 171 ~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~ 213 (215)
T cd00714 171 VAARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIA 213 (215)
T ss_pred EEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEE
Confidence 99999 499999985 578999999999999985 58999999875
No 15
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=5.6e-31 Score=235.66 Aligned_cols=164 Identities=12% Similarity=0.152 Sum_probs=134.6
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecC-C-----------------------eEEeecccccccC--------CCceee-e
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGS-S-----------------------GVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~-~-----------------------~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
....+..++.+|+|||+|+.|+.... . +.++++|+||+++ ||+..+ .
T Consensus 31 ~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~ 110 (474)
T PRK06388 31 AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSS 110 (474)
T ss_pred hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEeecC
Confidence 34578899999999999999977521 1 1245559999864 898534 3
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-CC-chHHHHhccccceeEEEEEeCCCCEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-GP-YPADQVVRDIQGKFAFILYDSSSKNAFL 145 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~ 145 (192)
.++++++|||+|+|+.+|+++|. . |.+.+|+|+++++|.+...+ +. .++++++++|+|+|||++++. ++|++
T Consensus 111 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a 188 (474)
T PRK06388 111 LGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMIN--DRLYA 188 (474)
T ss_pred CCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEEC--CEEEE
Confidence 57899999999999999999984 3 89999999999999643211 10 235679999999999999964 79999
Q ss_pred EEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 146 aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+||++|+||||||.. ++.++||||.+||..++.+.+++++||++.
T Consensus 189 ~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv 233 (474)
T PRK06388 189 IRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVV 233 (474)
T ss_pred EECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEE
Confidence 999999999999985 567999999999999887789999999985
No 16
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.97 E-value=2.3e-32 Score=236.16 Aligned_cols=157 Identities=20% Similarity=0.375 Sum_probs=141.4
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-C-CC
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-L-NK 97 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-~-~~ 97 (192)
.....++.+.++|||||-++..+.+...++ |.|++++ ||+ ++.++.+++..||||||+.+||+.+. + ++
T Consensus 17 ~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~--heRLAIvdp~sg~QPi-~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~ 93 (543)
T KOG0571|consen 17 KPKALELSRRIRHRGPDWSGLAQRNDNILG--HERLAIVDPTSGAQPI-VGEDGTYVVTVNGEIYNHKKLREHCKDFEFQ 93 (543)
T ss_pred ChhhhhHHHhhcCCCCCcchhheecccccc--ccceeEecCCcCCccc-ccCCCcEEEEECceeccHHHHHHHhhhcccc
Confidence 345677889999999999998877777788 9999976 998 67788888889999999999999987 5 88
Q ss_pred CCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhc
Q 029533 98 TANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKG 177 (192)
Q Consensus 98 ~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~ 177 (192)
+.+|+|+|+++|.+ +|.+++...|+|.|||+++|..++++++|||++|++|||||.+.+++++||||.+.|...
T Consensus 94 T~sDcEvIi~lY~k------hg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~ 167 (543)
T KOG0571|consen 94 TGSDCEVIIHLYEK------HGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDD 167 (543)
T ss_pred cCCCceeeeehHhh------cCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhh
Confidence 89999999999997 444689999999999999999999999999999999999999888999999999999999
Q ss_pred cCceeEEeCCCeeeC
Q 029533 178 CGKSFAPFPKGIYEI 192 (192)
Q Consensus 178 ~~~~~~~~ppG~~~~ 192 (192)
|. .++.|||||+|+
T Consensus 168 C~-~i~~fpPgh~y~ 181 (543)
T KOG0571|consen 168 CE-KIESFPPGHYYT 181 (543)
T ss_pred hh-ceeecCCcceee
Confidence 96 589999999984
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.7e-30 Score=232.95 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=134.5
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecC--------------------------CeEEeecccccccC--------CCceee
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGS--------------------------SGVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~--------------------------~~~l~~~~~r~~~~--------qP~~~~ 70 (192)
....+..++.+|+|||+|+.|+.... .+.++++|+|++++ ||+...
T Consensus 23 ~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~~ 102 (484)
T PRK07272 23 AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFH 102 (484)
T ss_pred HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEee
Confidence 34567899999999999999976521 02244559999854 998432
Q ss_pred -eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533 71 -VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAF 144 (192)
Q Consensus 71 -~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~ 144 (192)
.+++++++|||+|+|+.+||++|. . |.+.+|+|++++++.+..+... .++.+++++|+|+|||++++. ++|+
T Consensus 103 ~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~G~ya~~i~~~--~~l~ 180 (484)
T PRK07272 103 FHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTE--DKLI 180 (484)
T ss_pred cCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHccCceeEEEEEC--CEEE
Confidence 357899999999999999999983 3 8899999999999986321110 245689999999999999985 7899
Q ss_pred EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++|||+|+||||||..+++.++||||.+||..++.+.+++++|||++
T Consensus 181 a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv 227 (484)
T PRK07272 181 AALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIV 227 (484)
T ss_pred EEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEE
Confidence 99999999999999854567999999999998887788999999986
No 18
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.7e-30 Score=228.80 Aligned_cols=162 Identities=11% Similarity=0.121 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecC------------------------CeEEeecccccccC------CCceee-eCC
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGS------------------------SGVIAYSLNRQNPL------LPRLFA-VVD 73 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~------------------------~~~l~~~~~r~~~~------qP~~~~-~~~ 73 (192)
....+..++.+|+|||+|+.|+.+.+ .+.++++|+|++++ ||+... .++
T Consensus 15 ~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~~~~~QP~~~~~~~g 94 (442)
T PRK08341 15 APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGY 94 (442)
T ss_pred cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCCCcCcCCEEeecCCC
Confidence 44578899999999999999985411 12344459999965 998543 257
Q ss_pred cEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhh-cCCC--chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 74 DIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLR-DRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 74 ~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~-~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
+++++|||+|+|+.+|+++|. . |.+.+|+|++++++.+.. +.+. .++++++++|+|+|||++++. ++++++
T Consensus 95 ~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~ 172 (442)
T PRK08341 95 KIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVA 172 (442)
T ss_pred CEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEE
Confidence 899999999999999999984 3 899999999998775422 2121 245678999999999999984 789999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||++|+||||||. .+ .++||||.+||..++. .+++++|||++
T Consensus 173 RD~~GirPL~~G~-~~-~~~~ASE~~Al~~~~~-~v~~l~PGeiv 214 (442)
T PRK08341 173 RDPVGFRPLSYGE-GD-GHYFASEDSALRMFVN-EIRDVFPGEVF 214 (442)
T ss_pred EcCCCceEEEEEE-CC-EEEEEeCcHHHHhhCC-eEEEeCCCEEE
Confidence 9999999999998 44 4899999999998874 79999999986
No 19
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.6e-30 Score=231.44 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=132.5
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
...+..++.+|+|||+|+.|+.... .+.++++|+|++++ ||+... .
T Consensus 47 ~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~ 126 (500)
T PRK07349 47 AKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETR 126 (500)
T ss_pred HHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEeecC
Confidence 3455689999999999999975411 11234559999853 998433 2
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-Cc--hHHHHhccccceeEEEEEeCCCCEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-PY--PADQVVRDIQGKFAFILYDSSSKNAF 144 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~~--g~~~~~~~L~G~fa~vi~d~~~~~l~ 144 (192)
.++++++|||+|+|+.+||++|. . |.+.+|+|+++++|.+..+++ .| ++++++++|+|+|||++++. ++|+
T Consensus 127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~ 204 (500)
T PRK07349 127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM 204 (500)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence 47899999999999999999983 3 889999999999997633222 23 45679999999999999874 7899
Q ss_pred EEEcCCCCCcEEEEEec---CCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 145 LASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 145 ~aRD~~G~rPL~~~~~~---~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++||++|+||||||... ++.++||||.+||..++.+.+++++||+++
T Consensus 205 aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv 254 (500)
T PRK07349 205 GVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELV 254 (500)
T ss_pred EEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEE
Confidence 99999999999999742 357999999999988877789999999986
No 20
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=4.2e-30 Score=229.99 Aligned_cols=163 Identities=13% Similarity=0.178 Sum_probs=133.3
Q ss_pred hhHHHHHHHHhHhcCCCCcCeee-cCC------------------------eEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNL-GSS------------------------GVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~-~~~------------------------~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
...+..++.+|+|||+|+.|+.. +++ +.++++|+|++++ ||+... .
T Consensus 24 ~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~ 103 (471)
T PRK06781 24 AQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFS 103 (471)
T ss_pred HHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEecC
Confidence 35667899999999999999764 111 1234459999753 998432 3
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
+++++++|||+|+|+++|+++|. . |.+.+|+|+++++|.+..+... .++.+++++|+|+||+++++. ++++++
T Consensus 104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~aa 181 (471)
T PRK06781 104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTG--NEMIVA 181 (471)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEEE
Confidence 57899999999999999999984 3 8899999999999986321110 255788999999999999984 789999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||++|+|||||+.. ++.++||||.++|..++.+.+++++||++.
T Consensus 182 RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv 225 (471)
T PRK06781 182 LDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELL 225 (471)
T ss_pred ECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEE
Confidence 99999999999996 567999999999998877789999999986
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=99.97 E-value=5.2e-30 Score=230.22 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=132.2
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
...+..|+.+|+|||+|+.++...+ .+.++++|.|+++. ||+... .
T Consensus 14 ~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~ 93 (479)
T PLN02440 14 SRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYR 93 (479)
T ss_pred HHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCceeecC
Confidence 3567899999999999999976411 11234449999853 998433 3
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
.++++++|||+|+|+++|+++|. . +.+.+|+|+++++|.+..+... .++.++++.|+|+||+++||. ++|+++
T Consensus 94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~ 171 (479)
T PLN02440 94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAV 171 (479)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEE
Confidence 46799999999999999999984 2 7899999999999975211110 134579999999999999995 579999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||++|+|||||+..+++.++||||.++|..++.+.+++++|||++
T Consensus 172 RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv 216 (479)
T PLN02440 172 RDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVI 216 (479)
T ss_pred ECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEE
Confidence 999999999999754567999999999998877789999999986
No 22
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=4.9e-30 Score=231.60 Aligned_cols=162 Identities=11% Similarity=0.072 Sum_probs=132.0
Q ss_pred hHHHHHHHHhHhcCCCCcCeee---------------------------cCCeEEeecccccccC--------CCceeee
Q 029533 27 LKNGLLANHFSSVHPGSVTVNL---------------------------GSSGVIAYSLNRQNPL--------LPRLFAV 71 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~l~~~~~r~~~~--------qP~~~~~ 71 (192)
..+..|+.+|+|||||+.|++. .+..++| |.|+++. ||++.+.
T Consensus 15 ~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IG--HvRysT~G~~~~~n~QP~~~~~ 92 (501)
T PRK09246 15 QSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIG--HVRYPTAGSSSSAEAQPFYVNS 92 (501)
T ss_pred HHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEE--EEcCCcCCCCCcccCCCEEEeC
Confidence 4677899999999999999875 1334455 9999754 9985555
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC-----CCCCCCHHHHHHHHHHHhhcC--C------C--chHHHHhccccceeEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG-----LNKTANEVIIVIEAYRTLRDR--G------P--YPADQVVRDIQGKFAFILY 136 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~-----~~~~~~D~e~l~~ly~~~~~~--~------~--~g~~~~~~~L~G~fa~vi~ 136 (192)
..+++++|||+|+|+++|+++|. .+.+.+|+|++++++.+.... + . .++.++++.|+|+||++++
T Consensus 93 ~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~ 172 (501)
T PRK09246 93 PYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAM 172 (501)
T ss_pred CCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEE
Confidence 55699999999999999999883 278899999999999753111 1 1 2455789999999999988
Q ss_pred eCCCCEEEEEEcCCCCCcEEEEEec---CCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 137 DSSSKNAFLASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 137 d~~~~~l~~aRD~~G~rPL~~~~~~---~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
.. .++|+++||++|+|||||+..+ ++.++||||.+||..++.+.+++++|||++
T Consensus 173 ~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv 229 (501)
T PRK09246 173 II-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAI 229 (501)
T ss_pred ec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEE
Confidence 43 4679999999999999999852 347999999999999887889999999986
No 23
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.97 E-value=5.6e-30 Score=212.99 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHhHhcCC-CCcCeeecC----------------------------------CeEEeecccccccC-----
Q 029533 25 CALKNGLLANHFSSVHP-GSVTVNLGS----------------------------------SGVIAYSLNRQNPL----- 64 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGp-d~~~~~~~~----------------------------------~~~l~~~~~r~~~~----- 64 (192)
....+..|+.+|+|||+ |+.++++.. .+.++++|+|+++.
T Consensus 15 ~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~ 94 (249)
T cd01907 15 VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWW 94 (249)
T ss_pred cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCc
Confidence 45678899999999999 999987631 13344559999753
Q ss_pred ---CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-CC-------------------
Q 029533 65 ---LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-GP------------------- 117 (192)
Q Consensus 65 ---qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~~------------------- 117 (192)
||+ .. ++++++|||+|+|+.+|+++|. . +.+.+|+|+++++++...+. +.
T Consensus 95 ~n~qP~-~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~ 171 (249)
T cd01907 95 YGAHPF-SI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELL 171 (249)
T ss_pred cCCCCe-ec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHH
Confidence 997 22 4899999999999999999884 3 78999999999998753221 21
Q ss_pred --chHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc---CceeEEeCCCeeeC
Q 029533 118 --YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---GKSFAPFPKGIYEI 192 (192)
Q Consensus 118 --~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~---~~~~~~~ppG~~~~ 192 (192)
..+..+++.|+|+|||++++. ++++++|||+|.|||||+.. ++.++||||.++|...+ .+.+.+++||++++
T Consensus 172 ~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 172 LALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred HHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 022357899999999999985 67999999999999999986 57899999999999875 46789999999974
No 24
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=8.9e-30 Score=228.42 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecCC--------------------------eEEeecccccccC--------CCceee
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGSS--------------------------GVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~--------------------------~~l~~~~~r~~~~--------qP~~~~ 70 (192)
....+..++.+|+|||+|+.|+....+ +.++++|+|++++ ||+...
T Consensus 33 ~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~ 112 (479)
T PRK09123 33 AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAE 112 (479)
T ss_pred hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceee
Confidence 445678899999999999999764211 1234449999854 998433
Q ss_pred -eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533 71 -VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAF 144 (192)
Q Consensus 71 -~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~ 144 (192)
.+++++++|||+|+|+.+||++|. . +.+.+|+|++++++.+..+... .++.++++.|+|+||+++|+. ++++
T Consensus 113 ~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vil~~--~~l~ 190 (479)
T PRK09123 113 LEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTN--TKLI 190 (479)
T ss_pred cCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEEEEC--CEEE
Confidence 367899999999999999999983 3 7899999999999975321110 134579999999999999985 6999
Q ss_pred EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++||++|+|||||+.. ++.++||||.++|..+..+.+++++||+++
T Consensus 191 a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv 236 (479)
T PRK09123 191 GARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELV 236 (479)
T ss_pred EEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEE
Confidence 9999999999999986 578999999999987766779999999986
No 25
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=227.22 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=132.0
Q ss_pred hHHHHHHHHhHhcCCCCcCeeecCC-------------------------eEEeecccccccC--------CCceee--e
Q 029533 27 LKNGLLANHFSSVHPGSVTVNLGSS-------------------------GVIAYSLNRQNPL--------LPRLFA--V 71 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~~~~-------------------------~~l~~~~~r~~~~--------qP~~~~--~ 71 (192)
..+..++.+|+|||+|+.|+...++ +.++++|+|+++. ||+... .
T Consensus 38 ~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~ 117 (510)
T PRK07847 38 KLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAA 117 (510)
T ss_pred HHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCC
Confidence 4567899999999999999765211 1234559999863 998432 2
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C------CCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCC
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L------NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSS 140 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~------~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~ 140 (192)
.++++++|||+|+|+.+|+++|. . +.+.+|+|+|++++.+..+.+. .++.++++.|+|+|||+++|.
T Consensus 118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~-- 195 (510)
T PRK07847 118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE-- 195 (510)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence 57899999999999999999883 2 6899999999999986322111 245579999999999999995
Q ss_pred CEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533 141 KNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 141 ~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~ 192 (192)
++|+++||++|+|||||+.. ++.++||||.++|.....+.++++||||+++
T Consensus 196 ~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~ 246 (510)
T PRK07847 196 HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIA 246 (510)
T ss_pred CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEE
Confidence 78999999999999999996 5679999999999987667799999999863
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.97 E-value=2.5e-29 Score=209.28 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=131.8
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCC-------------------------eEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSS-------------------------GVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~-------------------------~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
...+..|++.|+|||||+.++....+ +.++++|+|+++. ||+... .
T Consensus 13 ~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~ 92 (252)
T cd00715 13 ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSP 92 (252)
T ss_pred HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecC
Confidence 45678999999999999999764211 1133449998853 998432 2
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCCCEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFL 145 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~ 145 (192)
+++++++|||+|+|+++|+++|. . +.+.+|+|++++++.+..+++. .+++++++.|+|.||++++|. ++|++
T Consensus 93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~ 170 (252)
T cd00715 93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA 170 (252)
T ss_pred CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence 57899999999999999999884 2 6788999999999986322111 234579999999999999997 89999
Q ss_pred EEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533 146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 146 aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~ 192 (192)
+||++|.|||||+...++.++||||.++|.....+.++++|||++++
T Consensus 171 ~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~ 217 (252)
T cd00715 171 VRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVV 217 (252)
T ss_pred EECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEE
Confidence 99999999999998643789999999999886545789999999863
No 27
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.97 E-value=1.5e-29 Score=203.47 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=98.8
Q ss_pred eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
..+++++++||||||+.+|+++|. . +.+.+|+|+++++|++ ||. +++++|+|+|||+|||++ ++|++|
T Consensus 48 ~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~------~G~-~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 48 RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR------LGL-HAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH------HhH-HHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 345799999999999999999984 2 7889999999999998 897 899999999999999998 999999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhcc-----------------CceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC-----------------GKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~-----------------~~~~~~~ppG~~~ 191 (192)
|||+|+|||||... +.++||||+++|.... .+.++.+|||++.
T Consensus 120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l 179 (199)
T cd01909 120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVN 179 (199)
T ss_pred ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEE
Confidence 99999999999884 7899999999997531 1358999999986
No 28
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.96 E-value=5.1e-29 Score=223.31 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=133.1
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~ 71 (192)
.+.+..++.+|+|||+|+.|+...+ .+.++++|+|+++. ||+... .
T Consensus 29 ~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~ 108 (469)
T PRK05793 29 ASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYK 108 (469)
T ss_pred HHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEeecC
Confidence 3456789999999999999976421 12244459999854 998443 3
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
+++++++|||+|+|+.+|+++|. . +.+.+|+|++++++.+..+.+. .++.+++++|+|+||+++++. ++++++
T Consensus 109 ~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~ 186 (469)
T PRK05793 109 LGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGV 186 (469)
T ss_pred CCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEE
Confidence 57899999999999999999983 3 7899999999999986322111 245679999999999999984 789999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||++|+|||||+.. ++.++||||.++|..++.+.+++++|||+.
T Consensus 187 RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv 230 (469)
T PRK05793 187 RDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIV 230 (469)
T ss_pred ECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEE
Confidence 99999999999996 567999999999998877789999999986
No 29
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.96 E-value=1e-28 Score=227.70 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=131.9
Q ss_pred hhHHHHHHHHhHhcCCCCcCeee---------------------------cCCeEEeecccccccC--------CCceee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNL---------------------------GSSGVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~l~~~~~r~~~~--------qP~~~~ 70 (192)
...+..|+.+|+|||||+.|++. .+..++| |+|++++ ||+ .+
T Consensus 14 ~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~ig--H~R~at~g~~~~~n~qP~-~~ 90 (604)
T PRK00331 14 AEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIG--HTRWATHGKPTERNAHPH-TD 90 (604)
T ss_pred HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEE--EEecCCCCCCccccCCcc-cc
Confidence 35778999999999999999875 1234555 9999854 898 44
Q ss_pred eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEeCCC-CE
Q 029533 71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSS-KN 142 (192)
Q Consensus 71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d~~~-~~ 142 (192)
.+++++++|||+|||+++|+++|. . +.+.+|+|+++++|.+..+.+ . .++++++++|+|+|||++||+.+ ++
T Consensus 91 ~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~ 170 (604)
T PRK00331 91 CSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDT 170 (604)
T ss_pred CCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCE
Confidence 568899999999999999999983 3 788999999999998643222 1 24568999999999999999886 89
Q ss_pred EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++++||+ |||||+.. ++.++||||.++|...+. .+++++||++.
T Consensus 171 l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~ 214 (604)
T PRK00331 171 IVAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIA 214 (604)
T ss_pred EEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEE
Confidence 9999996 99999995 567999999999999875 58999999986
No 30
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.96 E-value=1e-28 Score=220.18 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCcee
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLF 69 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~ 69 (192)
....+..|+.+|+|||+|+.+++.. +..++| |.|+++. ||+..
T Consensus 13 ~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~Ig--HvR~aT~G~~~~~n~QPf~~ 90 (442)
T TIGR01134 13 AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIG--HVRYSTAGSSSLSNAQPFVV 90 (442)
T ss_pred HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEE--EEEecCCCCCCccCCCCEEE
Confidence 3456778999999999999998641 234455 9999853 99854
Q ss_pred eeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhc-CCC--chHHHHhccccceeEEEEEeCCCCE
Q 029533 70 AVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRD-RGP--YPADQVVRDIQGKFAFILYDSSSKN 142 (192)
Q Consensus 70 ~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~-~~~--~g~~~~~~~L~G~fa~vi~d~~~~~ 142 (192)
+..++++++|||+|+|+++|+++|. . +.+.+|+|+++++|.+... .+. .++.+++++|+|+||++++| .++
T Consensus 91 ~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~ 168 (442)
T TIGR01134 91 NSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDG 168 (442)
T ss_pred eCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCE
Confidence 4445699999999999999999884 2 7889999999999986321 111 24567999999999999997 479
Q ss_pred EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++++||++|.|||||+.. ++.++||||.++|.....+.+++++||+++
T Consensus 169 L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv 216 (442)
T TIGR01134 169 LIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAV 216 (442)
T ss_pred EEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEE
Confidence 999999999999999986 578999999999987666789999999986
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.96 E-value=9.5e-29 Score=228.02 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=131.2
Q ss_pred hHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceeee
Q 029533 27 LKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFAV 71 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~~ 71 (192)
..+..|+.+|+|||||+.|++.. +.+++| |+|++++ ||+ ...
T Consensus 14 ~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qP~-~~~ 90 (607)
T TIGR01135 14 PILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIG--HTRWATHGKPTEENAHPH-TDE 90 (607)
T ss_pred HHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEE--EeeccCCCCCCccCCCCc-CcC
Confidence 57889999999999999998762 233555 9999854 998 445
Q ss_pred CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEeCCC-CEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSS-KNA 143 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d~~~-~~l 143 (192)
+++++++|||+|||+.+|+++|. . +.+.+|+|+++++|.+..+.+ . .++++++++|+|+|||++||+.+ +++
T Consensus 91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l 170 (607)
T TIGR01135 91 GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETL 170 (607)
T ss_pred CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEE
Confidence 67899999999999999999984 3 788999999999998743321 1 35668999999999999999875 569
Q ss_pred EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+++||+ |||||+.. ++.++||||.++|...+. .+.++|||+++
T Consensus 171 ~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~ 213 (607)
T TIGR01135 171 VAARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIA 213 (607)
T ss_pred EEEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEE
Confidence 999995 99999985 678999999999999884 57899999986
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=2.4e-28 Score=197.25 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=131.4
Q ss_pred HHHHHHhHhcCCCCcCeeecC---------------------------CeEEeecccccccC--------CCceeeeCCc
Q 029533 30 GLLANHFSSVHPGSVTVNLGS---------------------------SGVIAYSLNRQNPL--------LPRLFAVVDD 74 (192)
Q Consensus 30 ~~m~~~l~~RGpd~~~~~~~~---------------------------~~~l~~~~~r~~~~--------qP~~~~~~~~ 74 (192)
..|+..+.|||||+.+++... ..+++ |.|+++. ||+. ...++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--H~R~at~g~~~~~n~hPf~-~~~~~ 97 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALG--HVRLATNGLPSEANAQPFR-SEDGR 97 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEE--EeEeeecCCCCCCCCCCcC-cCCCC
Confidence 579999999999999987543 45556 9998853 9983 33368
Q ss_pred EEEEEEEEEcChHHHHHHhC----CCCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCCCEEEEEEc
Q 029533 75 IFCLFQGHIENVALLKQQYG----LNKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLASD 148 (192)
Q Consensus 75 ~~lv~nG~I~N~~eL~~~l~----~~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD 148 (192)
++++|||+|+|+.+|++++. .+.+.+|+|+++++|.+..+.+. ..+.++++.++|.|+|+++|..+++++++||
T Consensus 98 ~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd 177 (220)
T cd00352 98 IALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD 177 (220)
T ss_pred EEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEEC
Confidence 99999999999999999875 26788999999999987321110 1245899999999999999988899999999
Q ss_pred CCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 149 ADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 149 ~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++|.+||||+.+.++.++||||..++...+.+.+.++|||+++
T Consensus 178 ~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred CCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 9999999999962578999999999988775569999999974
No 33
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=4.4e-29 Score=187.23 Aligned_cols=115 Identities=20% Similarity=0.427 Sum_probs=73.2
Q ss_pred ccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHHHHHHHhhcCCCchHHHHhccc
Q 029533 58 LNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDI 127 (192)
Q Consensus 58 ~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L 127 (192)
|+|+++. ||+..+.++++++++||+|||+++|+++|.. +.+.+|+|+++++|++..+ |+. +++++|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~---~~~-~~~~~l 76 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYRE---WGE-DFLKRL 76 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH------HGG-GGGGT-
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHH---HHH-HHHHhC
Confidence 5566643 9983356788999999999999999999952 6788999999999985211 554 899999
Q ss_pred cceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533 128 QGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176 (192)
Q Consensus 128 ~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~ 176 (192)
+|.|||++||+.+++++++||++|+|||||+..+++.++||||+++|++
T Consensus 77 ~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 77 DGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp -EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred CceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999999988999999999999999999964368999999999864
No 34
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=1.1e-26 Score=215.54 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=130.9
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeec-C-C------------------------------eEEeecccccccC--------
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLG-S-S------------------------------GVIAYSLNRQNPL-------- 64 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~-~-~------------------------------~~l~~~~~r~~~~-------- 64 (192)
....+..++.+|+|||+|+.|+... + + +.++++|+||+++
T Consensus 36 ~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~ 115 (640)
T PTZ00295 36 ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENA 115 (640)
T ss_pred hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCC
Confidence 4456789999999999999997651 1 0 1234559999854
Q ss_pred CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEe
Q 029533 65 LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYD 137 (192)
Q Consensus 65 qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d 137 (192)
||+ ...+++++++|||+|+|+.+||++|. . +.+.+|+|++++++.+..+.+ . .++++++++|+|+|||++||
T Consensus 116 qP~-~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~ 194 (640)
T PTZ00295 116 HPH-CDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIH 194 (640)
T ss_pred CCC-CCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEE
Confidence 998 34457899999999999999999883 3 789999999999987532222 1 24567999999999999999
Q ss_pred CC-CCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 138 SS-SKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 138 ~~-~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+. .++++++||+ |||||+.. ++.++||||.++|...+.+ +..++||++.
T Consensus 195 ~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~ 244 (640)
T PTZ00295 195 KDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIA 244 (640)
T ss_pred eCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEE
Confidence 76 4899999997 99999985 5679999999999988865 6679999985
No 35
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.93 E-value=1.5e-25 Score=169.93 Aligned_cols=119 Identities=22% Similarity=0.401 Sum_probs=104.2
Q ss_pred CCCcCe--eecCCeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHH
Q 029533 41 PGSVTV--NLGSSGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVI 106 (192)
Q Consensus 41 pd~~~~--~~~~~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~ 106 (192)
||..++ +..+.++|+ |+|+++. ||+ .+.+++++++|||+|+|+.+|++++.. +.+.+|+|+++
T Consensus 1 pd~~~~~~~~~~~~~lg--H~R~AT~G~~~~~~~hPf-~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~ 77 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALG--HTRYATVGSPTEENNHPF-SNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIA 77 (133)
T ss_pred CChHHHHHhcCCCEEEE--EeecCCCCCCCCcCCCCC-cCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHH
Confidence 556565 566678888 9999854 998 667789999999999999999998852 78899999999
Q ss_pred HHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEec
Q 029533 107 EAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDD 170 (192)
Q Consensus 107 ~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe 170 (192)
+++++ +| +++++.|+|.|++++++...++++++||+.|.|||||+.. ++.++||||
T Consensus 78 ~li~~------~g-~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 78 ALIHR------WG-EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHH------HH-HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99976 67 5899999999999999988899999999999999999996 688999998
No 36
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.93 E-value=3.3e-25 Score=193.80 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=134.4
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecCCe--------------------------EEeecccccccC--------CCceeee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGSSG--------------------------VIAYSLNRQNPL--------LPRLFAV 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~--------------------------~l~~~~~r~~~~--------qP~~~~~ 71 (192)
.+.+..++.+|+|||.++.++...++. ..+++|.|.++. ||+..+.
T Consensus 19 ~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~ 98 (470)
T COG0034 19 AQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNS 98 (470)
T ss_pred HHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCCCCcccccccceEEec
Confidence 346788999999999999987543220 224459998753 9985443
Q ss_pred -CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhc-CCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533 72 -VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRD-RGP-YPADQVVRDIQGKFAFILYDSSSKNAF 144 (192)
Q Consensus 72 -~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~-~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~ 144 (192)
.+.++++|||.|.|..+||++|. . |.+.+|+|++++++.+-.. .+. .+++++++.++|.||++++.. ++|+
T Consensus 99 ~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~li 176 (470)
T COG0034 99 PGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGLI 176 (470)
T ss_pred CCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeEE
Confidence 45799999999999999999984 2 8899999999999986321 111 356778899999999999985 5999
Q ss_pred EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
++|||.|+|||.+|...||.++||||.+||..++.+.+++++||++.
T Consensus 177 a~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v 223 (470)
T COG0034 177 AVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAV 223 (470)
T ss_pred EEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEE
Confidence 99999999999999965666999999999999999999999999985
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.91 E-value=6e-24 Score=198.27 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecC-C---------------------------------------eEEeecccccccC
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGS-S---------------------------------------GVIAYSLNRQNPL 64 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~-~---------------------------------------~~l~~~~~r~~~~ 64 (192)
....+...+.+|+|||.|+.|+.+.. + +.++++|+||+++
T Consensus 19 ~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~IGH~R~at~ 98 (680)
T PLN02981 19 ILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATH 98 (680)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEEEEEcccccC
Confidence 44678899999999999999987521 1 1245559999864
Q ss_pred --------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-----C--C--chHHHH
Q 029533 65 --------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-----G--P--YPADQV 123 (192)
Q Consensus 65 --------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-----~--~--~g~~~~ 123 (192)
||+....++.++++|||+|+|+.+||++|. . |.+.+|+|++++++++..+. + . .++.++
T Consensus 99 g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~ 178 (680)
T PLN02981 99 GPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEV 178 (680)
T ss_pred CCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHH
Confidence 998433347899999999999999999983 3 89999999999986542211 1 1 245579
Q ss_pred hccccceeEEEEEeCCC-CEEEEEEcCCCCCcEEEEEec--C---------------------CeEEEEecchhhhhccC
Q 029533 124 VRDIQGKFAFILYDSSS-KNAFLASDADGSVPFFWGTDS--E---------------------GHLVLSDDVEIVKKGCG 179 (192)
Q Consensus 124 ~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPL~~~~~~--~---------------------~~~~faSe~~al~~~~~ 179 (192)
+++|+|+|||+++++.. ++++++||+ +||++|..+ + +.+++|||.+||...+
T Consensus 179 ~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~- 254 (680)
T PLN02981 179 MRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHT- 254 (680)
T ss_pred HHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhc-
Confidence 99999999999999764 899999996 999999852 1 3699999999999985
Q ss_pred ceeEEeCCCeee
Q 029533 180 KSFAPFPKGIYE 191 (192)
Q Consensus 180 ~~~~~~ppG~~~ 191 (192)
+.+++++||++.
T Consensus 255 ~~~~~l~~gei~ 266 (680)
T PLN02981 255 KRVLVIEDNEVV 266 (680)
T ss_pred CEEEEECCCeEE
Confidence 579999999986
No 38
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.91 E-value=3.4e-23 Score=192.81 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeec-----------------C----------------------------------CeE
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLG-----------------S----------------------------------SGV 53 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~-----------------~----------------------------------~~~ 53 (192)
-...+...+.+|+|||.|+.|+... + .+.
T Consensus 19 ~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~~~~~~~~~~~~~~~~g~ 98 (670)
T PTZ00394 19 ILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHH 98 (670)
T ss_pred HHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhcchhhhhccccccCCCCC
Confidence 4457889999999999999886553 1 012
Q ss_pred EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-C--C-
Q 029533 54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-G--P- 117 (192)
Q Consensus 54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~--~- 117 (192)
++++|+||+++ ||+ .+.+++++++|||+|||+.+||++|. . |.+.+|+|++++++++..+. + .
T Consensus 99 ~~igH~R~at~g~~~~~n~qP~-~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~ 177 (670)
T PTZ00394 99 VGIAHTRWATHGGVCERNCHPQ-QSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNF 177 (670)
T ss_pred EEEEEeeceecCCCCcCCCCCc-CCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCH
Confidence 45669999864 998 45578899999999999999999983 3 89999999999887653321 2 1
Q ss_pred -chHHHHhccccceeEEEEEeCC-CCEEEEEEcCCCCCcEEEEEecC--------------------CeEEEEecchhhh
Q 029533 118 -YPADQVVRDIQGKFAFILYDSS-SKNAFLASDADGSVPFFWGTDSE--------------------GHLVLSDDVEIVK 175 (192)
Q Consensus 118 -~g~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPL~~~~~~~--------------------~~~~faSe~~al~ 175 (192)
.++.+++++|+|+|||++.+.. .++|+++||+ +||++|..++ +.++|||+..+|.
T Consensus 178 ~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~ 254 (670)
T PTZ00394 178 ADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFA 254 (670)
T ss_pred HHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHH
Confidence 2456899999999999999643 4899999998 9999998531 4799999999999
Q ss_pred hccCceeEEeCCCeee
Q 029533 176 KGCGKSFAPFPKGIYE 191 (192)
Q Consensus 176 ~~~~~~~~~~ppG~~~ 191 (192)
..+. .+..+++|++.
T Consensus 255 ~~t~-~~~~l~dg~~~ 269 (670)
T PTZ00394 255 EYTR-EVVFLEDGDIA 269 (670)
T ss_pred Hhhc-eEEEecCCeEE
Confidence 9985 58999999986
No 39
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.90 E-value=4.9e-23 Score=176.21 Aligned_cols=160 Identities=13% Similarity=0.165 Sum_probs=129.2
Q ss_pred HHHHHHhHhcCCCCcCeeecC--------------------------CeEEeecccccccC--------CCceeeeC-Cc
Q 029533 30 GLLANHFSSVHPGSVTVNLGS--------------------------SGVIAYSLNRQNPL--------LPRLFAVV-DD 74 (192)
Q Consensus 30 ~~m~~~l~~RGpd~~~~~~~~--------------------------~~~l~~~~~r~~~~--------qP~~~~~~-~~ 74 (192)
....-+|+|||.|+-++-..+ .+.++++|+|+++. ||++.+.. +.
T Consensus 20 ~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~ 99 (474)
T KOG0572|consen 20 ALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGS 99 (474)
T ss_pred HhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccccccccccccceEeeccCce
Confidence 334478999999998865421 24466779998853 99966543 56
Q ss_pred EEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHh----h--cCCCc--hHHHHhccccceeEEEEEeCCCCE
Q 029533 75 IFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTL----R--DRGPY--PADQVVRDIQGKFAFILYDSSSKN 142 (192)
Q Consensus 75 ~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~----~--~~~~~--g~~~~~~~L~G~fa~vi~d~~~~~ 142 (192)
++++|||++-|+++||+++. . +.|.+|+|+|++++... . +..+| .++.+.+.++|.||++++-. ++
T Consensus 100 lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~ 177 (474)
T KOG0572|consen 100 LAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DK 177 (474)
T ss_pred EEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--cE
Confidence 99999999999999999984 2 78999999999998642 1 11223 46789999999999999974 67
Q ss_pred EEEEEcCCCCCcEEEEEecCC----eEEEEecchhhhhccCceeEEeCCCeee
Q 029533 143 AFLASDADGSVPFFWGTDSEG----HLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 143 l~~aRD~~G~rPL~~~~~~~~----~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
||+.|||+|.|||++|+..+. .+++|||.+++..+..+..+++.||++.
T Consensus 178 l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV 230 (474)
T KOG0572|consen 178 LYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIV 230 (474)
T ss_pred EEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEE
Confidence 999999999999999984332 7999999999999988889999999975
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.1e-21 Score=178.05 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=132.1
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceeeeC
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFAVV 72 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~~~ 72 (192)
...+.+.+++|..||-|+.|+...+ .+.+|++|+||+++ ||+ .+
T Consensus 15 ~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG~P~~~NAHPh-~~-- 91 (597)
T COG0449 15 IDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHGGPTRANAHPH-SD-- 91 (597)
T ss_pred HHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccCCCCCCcCCCCCC-CC--
Confidence 4578899999999999999976431 13455669999976 887 33
Q ss_pred CcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCC-CEEEEE
Q 029533 73 DDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSS-KNAFLA 146 (192)
Q Consensus 73 ~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~-~~l~~a 146 (192)
++++|||||.|.|+.+||++|. . |.+++|+|++.|++++..+++. .+++.++++|+|+||+++.|.+. ++|++|
T Consensus 92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a 171 (597)
T COG0449 92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA 171 (597)
T ss_pred CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence 8999999999999999999995 4 9999999999999987544321 35667899999999999999986 799999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
|.. .||+.|.. ++..++||+..+++..+. .+..+..|++-
T Consensus 172 r~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~-~~~~l~dgd~~ 211 (597)
T COG0449 172 RKG---SPLVIGVG-EGENFLASDVSALLNFTR-RFVYLEEGDIA 211 (597)
T ss_pred cCC---CCeEEEec-CCcceEecChhhhhhhhc-eEEEeCCCCEE
Confidence 995 99999994 678899999999999885 48888888763
No 41
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.74 E-value=4e-17 Score=143.62 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=99.3
Q ss_pred eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC--------------------C-CCCCCHH
Q 029533 52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG--------------------L-NKTANEV 102 (192)
Q Consensus 52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~--------------------~-~~~~~D~ 102 (192)
..++..|+|.++. ||+ .+++|||||.|+..+++.+. + ..+.||+
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPf-------r~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS 273 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPF-------RYLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDS 273 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcc-------eeEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChH
Confidence 3355559999854 886 25999999999998877652 1 3468999
Q ss_pred HHHHHHHHHhhcCC-C--chHH-------------------------HHhccccceeEEEEEeCCCCEEEEEEcCCCCCc
Q 029533 103 IIVIEAYRTLRDRG-P--YPAD-------------------------QVVRDIQGKFAFILYDSSSKNAFLASDADGSVP 154 (192)
Q Consensus 103 e~l~~ly~~~~~~~-~--~g~~-------------------------~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP 154 (192)
+.+.++++.+...+ + ..+. .+++.++|+||+++.|. +.++++|||.|.||
T Consensus 274 ~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRP 351 (413)
T cd00713 274 ASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRP 351 (413)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcc
Confidence 99999887543222 1 1111 45688999999999884 78999999999999
Q ss_pred EEEEEecCCeEEEEecchhhhhccCceeE---EeCCCeee
Q 029533 155 FFWGTDSEGHLVLSDDVEIVKKGCGKSFA---PFPKGIYE 191 (192)
Q Consensus 155 L~~~~~~~~~~~faSe~~al~~~~~~~~~---~~ppG~~~ 191 (192)
|+|+.++++.+++|||..++.. ..+.+. ++.||+++
T Consensus 352 l~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v 390 (413)
T cd00713 352 ARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEML 390 (413)
T ss_pred eEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEE
Confidence 9999876667999999999955 444565 89999986
No 42
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.66 E-value=1.2e-15 Score=127.42 Aligned_cols=130 Identities=15% Similarity=0.255 Sum_probs=102.0
Q ss_pred CeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-----CCCCCCHHHHHHHHHHHhh-cCC
Q 029533 51 SGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-----LNKTANEVIIVIEAYRTLR-DRG 116 (192)
Q Consensus 51 ~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-----~~~~~~D~e~l~~ly~~~~-~~~ 116 (192)
.++|+ |.|+++. ||+.. ++++++|||.|.|++++++.+. .+.+.+|+|++++++.+.. +.+
T Consensus 81 ~~~l~--H~R~At~G~~~~~n~hPf~~---~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~ 155 (257)
T cd01908 81 PLVLA--HVRAATVGPVSLENCHPFTR---GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD 155 (257)
T ss_pred cEEEE--EEecCCCCCCccccCCCccc---CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcC
Confidence 34555 9998853 89732 4899999999999999998874 2688999999999886532 211
Q ss_pred C-------chHHHHhcccc-----ceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec-----------------CCeEEE
Q 029533 117 P-------YPADQVVRDIQ-----GKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-----------------EGHLVL 167 (192)
Q Consensus 117 ~-------~g~~~~~~~L~-----G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~-----------------~~~~~f 167 (192)
+ .++.+.++.|+ |.|++++.|. ++|+++||+. .+||||+... ++.++|
T Consensus 156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 232 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV 232 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence 1 35667888898 7889888874 7899999998 8999999853 368999
Q ss_pred EecchhhhhccCceeEEeCCCeeeC
Q 029533 168 SDDVEIVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 168 aSe~~al~~~~~~~~~~~ppG~~~~ 192 (192)
|||..+... .++++|||++++
T Consensus 233 aSE~l~~~~----~w~~v~~ge~~~ 253 (257)
T cd01908 233 ASEPLTDDE----GWTEVPPGELVV 253 (257)
T ss_pred EeCCCCCCC----CceEeCCCEEEE
Confidence 999887643 489999999863
No 43
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.60 E-value=7.9e-15 Score=128.30 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=106.1
Q ss_pred chhhhHHHHHHHHhHhcCCCCcCe-eecC--CeEEe---eccccc-ccCCCceeeeCCcEEEEEEEEEcChHHHHHHhCC
Q 029533 23 SACALKNGLLANHFSSVHPGSVTV-NLGS--SGVIA---YSLNRQ-NPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL 95 (192)
Q Consensus 23 ~~~~~~~~~m~~~l~~RGpd~~~~-~~~~--~~~l~---~~~~r~-~~~qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~ 95 (192)
..+.....+|...+..||||..+- .... +..+. +.|.|- .+.||+ .+++++++.|||+|||..-
T Consensus 14 l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpv--v~d~~~vfl~NGeIyn~~~------- 84 (520)
T KOG0573|consen 14 LNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPV--VEDDRYVFLFNGEIYNGEK------- 84 (520)
T ss_pred ccccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCce--ecccceEEEecceeccCCC-------
Confidence 445556788999999999998763 3322 11111 112233 344997 4556689999999999652
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533 96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175 (192)
Q Consensus 96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~ 175 (192)
..+..|+.++++....+.+. .++.+.++.++|+|||++||...++||++||++|+|+|.|+.+..+...++|..-
T Consensus 85 s~~~~d~~~l~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g--- 159 (520)
T KOG0573|consen 85 SDTLFDTDILAEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG--- 159 (520)
T ss_pred ccccchHHHHHHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc---
Confidence 34567999998888765433 3577899999999999999999999999999999999999997545434333321
Q ss_pred hccCceeEEeCCC
Q 029533 176 KGCGKSFAPFPKG 188 (192)
Q Consensus 176 ~~~~~~~~~~ppG 188 (192)
...+.+.|+||+
T Consensus 160 -~~~~~i~e~~~~ 171 (520)
T KOG0573|consen 160 -TSGKLIYEVPPV 171 (520)
T ss_pred -cCCccccccCch
Confidence 122335688887
No 44
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.60 E-value=1.6e-14 Score=120.42 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=92.6
Q ss_pred ccccccC---------CCceeeeCCcEEEEEEEEEcChH-----HHHHHhC-----CCCCCCHHHHHHHHHHHhh-cCCC
Q 029533 58 LNRQNPL---------LPRLFAVVDDIFCLFQGHIENVA-----LLKQQYG-----LNKTANEVIIVIEAYRTLR-DRGP 117 (192)
Q Consensus 58 ~~r~~~~---------qP~~~~~~~~~~lv~nG~I~N~~-----eL~~~l~-----~~~~~~D~e~l~~ly~~~~-~~~~ 117 (192)
|.|+++. ||+. .++++++|||.|.|++ +|++++. .+.+.+|+|++.+++.+.. +..+
T Consensus 88 HvR~AT~G~~~~~~N~hPf~---~g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~ 164 (251)
T TIGR03442 88 AVRSATVGMAIDESACAPFS---DGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDP 164 (251)
T ss_pred EeeeCCCCCCcchhcCCCCC---cCCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 8887632 9973 3789999999999997 4555553 2678999999988886532 2111
Q ss_pred ----chHHHHhccccce-------eEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCc-eeEEe
Q 029533 118 ----YPADQVVRDIQGK-------FAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK-SFAPF 185 (192)
Q Consensus 118 ----~g~~~~~~~L~G~-------fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~-~~~~~ 185 (192)
..+.++++.|.|. |++++.| .++|++.||+. ||||+.. ++.++||||. +..+ .++++
T Consensus 165 ~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~-~~~~vvASEp-----l~~~~~W~~v 233 (251)
T TIGR03442 165 RALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKD-PEGVIVASEP-----YDDDPGWQDV 233 (251)
T ss_pred chHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEc-CCEEEEEeCC-----cCCCCCceEe
Confidence 2455677888888 9999998 48999999985 9999985 4679999998 3333 79999
Q ss_pred CCCeeeC
Q 029533 186 PKGIYEI 192 (192)
Q Consensus 186 ppG~~~~ 192 (192)
|||++++
T Consensus 234 ~pge~v~ 240 (251)
T TIGR03442 234 PDRHLLS 240 (251)
T ss_pred CCCeEEE
Confidence 9999863
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.53 E-value=1.2e-13 Score=120.46 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=77.7
Q ss_pred CeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCC----------------CCHH
Q 029533 51 SGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKT----------------ANEV 102 (192)
Q Consensus 51 ~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~----------------~~D~ 102 (192)
..+++ |+|+++. ||+ .+++|||+|.|...+++.+. . ..+ .||+
T Consensus 196 ~~~i~--H~RysTnt~p~w~~AqPf-------~~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 196 HFAIG--HQRYSTNTFPSWENAQPF-------RALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp SEEEE--EEEE-SSSSCSGGGSSSE-------EEEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred eEEEE--EEecCCCCCCcchhcChH-------HHhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 45555 9999854 887 18999999999999988763 1 333 8999
Q ss_pred HHHHHHHHHhhcCC----------------------C------chHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCc
Q 029533 103 IIVIEAYRTLRDRG----------------------P------YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVP 154 (192)
Q Consensus 103 e~l~~ly~~~~~~~----------------------~------~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP 154 (192)
+.+.++++.+...+ + .-...+++.++|.|++++.|. +.++++|||.|.||
T Consensus 267 ~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP 344 (361)
T PF00310_consen 267 EVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRP 344 (361)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcc
Confidence 99988887543333 0 013456788999999999874 67999999999999
Q ss_pred EEEEEecCCeEEEEecc
Q 029533 155 FFWGTDSEGHLVLSDDV 171 (192)
Q Consensus 155 L~~~~~~~~~~~faSe~ 171 (192)
+.|+.++|+.+++|||.
T Consensus 345 ~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 345 LRYGITEDGLVVLASEA 361 (361)
T ss_dssp -EEEEETTCEEEEESST
T ss_pred eEEEEECCCEEEEEeCC
Confidence 99999867889999984
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.47 E-value=1.3e-13 Score=122.52 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=103.9
Q ss_pred chhhhHHHHHHHHhHhcCCCCcCeeecC---------------------------------CeEEeecccccccC-----
Q 029533 23 SACALKNGLLANHFSSVHPGSVTVNLGS---------------------------------SGVIAYSLNRQNPL----- 64 (192)
Q Consensus 23 ~~~~~~~~~m~~~l~~RGpd~~~~~~~~---------------------------------~~~l~~~~~r~~~~----- 64 (192)
.+.-.++-.-+.+|..||-|+.|+..++ ..-++++|+||+++
T Consensus 17 ~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~ 96 (670)
T KOG1268|consen 17 GEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSE 96 (670)
T ss_pred HHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeeeeeeeeeehhhcCCCCc
Confidence 3444566778889999999998887542 02244559999965
Q ss_pred ---CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC--ch----HHHHhcccccee
Q 029533 65 ---LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP--YP----ADQVVRDIQGKF 131 (192)
Q Consensus 65 ---qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~--~g----~~~~~~~L~G~f 131 (192)
||+..+..+.++++|||.|.||++|++.|. + |.+++|+|+++.+++...+.-+ .. ++.++++++|+|
T Consensus 97 ~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaF 176 (670)
T KOG1268|consen 97 VNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAF 176 (670)
T ss_pred cCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHH
Confidence 887555668899999999999999999884 4 8899999999999987765422 11 456899999999
Q ss_pred EEEEEeCC-CCEEEEEEcCCCCCcEEEEE
Q 029533 132 AFILYDSS-SKNAFLASDADGSVPFFWGT 159 (192)
Q Consensus 132 a~vi~d~~-~~~l~~aRD~~G~rPL~~~~ 159 (192)
++++-... .+++.+.|+. .||..|.
T Consensus 177 alvfkS~hfP~e~Va~Rrg---SPlliGv 202 (670)
T KOG1268|consen 177 GLLFKSSHFPGEVVAARKG---SPLLIGV 202 (670)
T ss_pred HHHHHhhcCCcceeeeccC---Ccceeee
Confidence 99987654 4899999994 7888775
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.29 E-value=3.7e-11 Score=118.20 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=93.2
Q ss_pred eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChH----HHHHH--h-------------CC-CCCCCHHH
Q 029533 52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVA----LLKQQ--Y-------------GL-NKTANEVI 103 (192)
Q Consensus 52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~----eL~~~--l-------------~~-~~~~~D~e 103 (192)
..++..|+|.++. ||+ -.++|||||.-.. .++.+ . .+ ....||++
T Consensus 212 s~~al~HsRFSTNT~PsW~~AqPF-------R~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa 284 (1485)
T PRK11750 212 SAICVFHQRFSTNTLPRWPLAQPF-------RYLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSS 284 (1485)
T ss_pred EEEEEEECcCCCCCCCCCCcCCCc-------eeeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHH
Confidence 3455569999864 775 2489999997333 22211 0 01 24568998
Q ss_pred HHHHHHHHhhcCC-----------C--ch--------H-------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcE
Q 029533 104 IVIEAYRTLRDRG-----------P--YP--------A-------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPF 155 (192)
Q Consensus 104 ~l~~ly~~~~~~~-----------~--~g--------~-------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL 155 (192)
.+-.+++-+-..| | |. . ..+++-++|+||+++.| .+.+++.|||.|.|||
T Consensus 285 ~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPl 362 (1485)
T PRK11750 285 SLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPA 362 (1485)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccc
Confidence 8766665432221 0 21 1 12456689999999998 4899999999999999
Q ss_pred EEEEecCCeEEEEecchhhhhccCceeE--EeCCCeee
Q 029533 156 FWGTDSEGHLVLSDDVEIVKKGCGKSFA--PFPKGIYE 191 (192)
Q Consensus 156 ~~~~~~~~~~~faSe~~al~~~~~~~~~--~~ppG~~~ 191 (192)
.|+.++|+.+++|||..++.....+.++ ++.||+++
T Consensus 363 r~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi 400 (1485)
T PRK11750 363 RYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELL 400 (1485)
T ss_pred eEEEEcCCEEEEEecceeeecccceeEEecccCCCeEE
Confidence 9988767789999999998776666677 99999986
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.25 E-value=1.2e-05 Score=67.95 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=64.0
Q ss_pred ecccccccC--------CCceee-eCCcEEEEEEEEEcChHHHHH-HhCCCCCCCHHHHHHHHHHH-hhcCC---Cc---
Q 029533 56 YSLNRQNPL--------LPRLFA-VVDDIFCLFQGHIENVALLKQ-QYGLNKTANEVIIVIEAYRT-LRDRG---PY--- 118 (192)
Q Consensus 56 ~~~~r~~~~--------qP~~~~-~~~~~~lv~nG~I~N~~eL~~-~l~~~~~~~D~e~l~~ly~~-~~~~~---~~--- 118 (192)
++|.|.+.. ||+... ..++.+.+|||.|.+++.++. .+. ..+.+|+|.+..++-. +.+.+ +.
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~ 153 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALE 153 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHH
Confidence 348887742 997432 135789999999999876652 222 5678999998877643 22221 10
Q ss_pred ----hHHHHhcccc--ceeEEEEEeCCCCEEEEEEcC----CCCCcEE-------------EE---EecCCeEEEEecch
Q 029533 119 ----PADQVVRDIQ--GKFAFILYDSSSKNAFLASDA----DGSVPFF-------------WG---TDSEGHLVLSDDVE 172 (192)
Q Consensus 119 ----g~~~~~~~L~--G~fa~vi~d~~~~~l~~aRD~----~G~rPL~-------------~~---~~~~~~~~faSe~~ 172 (192)
.+.+..+++. |.++|++.|. +.|++.|+. .-+++.+ .. ...+..++||||.=
T Consensus 154 ~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePL 231 (271)
T PF13230_consen 154 ELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPL 231 (271)
T ss_dssp HHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS--
T ss_pred HHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccC
Confidence 1233445544 6888999884 799999992 1122222 00 11245788999854
Q ss_pred hhhhccCceeEEeCCCeeeC
Q 029533 173 IVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 173 al~~~~~~~~~~~ppG~~~~ 192 (192)
. ..+...++|+|++++
T Consensus 232 t----~~e~W~~vp~g~~l~ 247 (271)
T PF13230_consen 232 T----DDEDWEPVPPGSLLV 247 (271)
T ss_dssp ------SS--EE--SSEEEE
T ss_pred C----CCCCeEEcCCCcEEE
Confidence 3 123589999999863
No 49
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.24 E-value=1.1e-05 Score=63.42 Aligned_cols=94 Identities=17% Similarity=0.309 Sum_probs=65.2
Q ss_pred eCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533 71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 146 (192)
Q Consensus 71 ~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~a 146 (192)
.+.+...-.-|.|||+.-|+.-.+. ....+|+|+++.++.++ |. .++.--+|+|+|.|=|+ +++|.+.
T Consensus 45 ~~~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~l------G~-~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 45 RFERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRL------GN-SALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp EETTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-------G-GGGGG--SSEEEEEEET-TSEEEEE
T ss_pred EecCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHh------hh-hhhhhhcCceEEEEecC-CCcEEEE
Confidence 4456678889999999888766553 23469999999998874 43 68888999999999875 7899999
Q ss_pred EcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533 147 SDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (192)
Q Consensus 147 RD~~G~rPL~~~~~~~~~~~faSe~~al 174 (192)
.|+-|..|.|.-.+ +..++...+|-+
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V 142 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLV 142 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHH
T ss_pred ecCCCCceEEEEec--CceEEecceEEE
Confidence 99999999998774 456777766644
No 50
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=98.00 E-value=3.9e-05 Score=67.14 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=81.5
Q ss_pred eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC----CCCCCCHHHHHHHHHHHhhcCC-C-
Q 029533 52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG----LNKTANEVIIVIEAYRTLRDRG-P- 117 (192)
Q Consensus 52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~----~~~~~~D~e~l~~ly~~~~~~~-~- 117 (192)
+.++..|+|.++. ||+ -.++|||||.++..-++.+. .+++.+|+|.+..++.-..+.+ +
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPf-------r~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs 274 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPF-------RLLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDS 274 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCcc-------eeeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcc
Confidence 3455559999864 775 24699999998877666553 2678888888887774321111 0
Q ss_pred ------------chH-HHHhccccceeEEEEEeCC-CCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccC
Q 029533 118 ------------YPA-DQVVRDIQGKFAFILYDSS-SKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179 (192)
Q Consensus 118 ------------~g~-~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~ 179 (192)
.|. ..-...|.|+||++.-..- ++...+.+|+.+.+|.+-|.. +..+.++|+..|++..++
T Consensus 275 ~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng 349 (371)
T COG0067 275 ASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG 349 (371)
T ss_pred hhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC
Confidence 011 1234568889998875422 356777899999999888874 567888899888877654
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.00 E-value=0.21 Score=41.84 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=30.9
Q ss_pred eEEeecccccccC--------CCceeee-CCcEEEEEEEEEcChHHH-HHHhCCCCCCCHHHHH
Q 029533 52 GVIAYSLNRQNPL--------LPRLFAV-VDDIFCLFQGHIENVALL-KQQYGLNKTANEVIIV 105 (192)
Q Consensus 52 ~~l~~~~~r~~~~--------qP~~~~~-~~~~~lv~nG~I~N~~eL-~~~l~~~~~~~D~e~l 105 (192)
.+++ |.|.+.. ||++... .....++|||.|.+++.+ ...+. ....+|++..
T Consensus 72 ~via--HvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~ 132 (252)
T COG0121 72 LVIA--HVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAA 132 (252)
T ss_pred EEEE--EEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHH
Confidence 4444 8887742 8974332 345689999999999863 33332 2334555543
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.51 E-value=1.8 Score=43.74 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred HhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533 123 VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV 174 (192)
Q Consensus 123 ~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al 174 (192)
.++-.+|+--+.+-|. +.+=+.=||.|.||-=|+.+.|+.+++|||.-.+
T Consensus 406 ~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv 455 (2142)
T KOG0399|consen 406 QMEPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVV 455 (2142)
T ss_pred cCCCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeeccccc
Confidence 4567888876666653 5666667999999998888888999999997654
No 53
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=58.14 E-value=13 Score=24.24 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEeCCCCEEEEEEcCCCC--CcEEEE
Q 029533 133 FILYDSSSKNAFLASDADGS--VPFFWG 158 (192)
Q Consensus 133 ~vi~d~~~~~l~~aRD~~G~--rPL~~~ 158 (192)
-+.+|...+++++..|. |+ |||+.-
T Consensus 35 si~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 35 SIVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp EEEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred EEEEeccCCEEEEEccC-CcccceeEEe
Confidence 35688888999999997 74 888763
No 54
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=44.74 E-value=7.9 Score=29.34 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=18.6
Q ss_pred cceeEEEEEeCCCCEEEEEEcCCCCCcEEE
Q 029533 128 QGKFAFILYDSSSKNAFLASDADGSVPFFW 157 (192)
Q Consensus 128 ~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~ 157 (192)
+|.|+++++.. ++++-..++ |++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~r-Gv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDGR-GVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE--S-TTHHHHH
T ss_pred hCCceEEEEeC--CEEEEeCCC-ChHHHHH
Confidence 57899999864 567766665 9999983
No 55
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=42.47 E-value=16 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecch
Q 029533 122 QVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVE 172 (192)
Q Consensus 122 ~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~ 172 (192)
.+..-.+|.=+.++.|. +++-+-||+.|.||-=|..++++.++++||..
T Consensus 322 ~l~epwdGpa~~~f~dg--se~gA~ldrngLrp~Ry~~t~d~~vv~~se~g 370 (371)
T COG0067 322 ALMEPWDGPADIVFTDG--SEEGAILDRNGLRPARYWITKDGEVVVASEAG 370 (371)
T ss_pred hCCCCccCCcceeEEee--eeeeeeeccCCCCcceEEEecCCEEEEEEecc
Confidence 45677899999999985 68888899999999988888889999999864
No 56
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=36.01 E-value=25 Score=27.45 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.3
Q ss_pred CcEEEEEEEEEcChHHHHH
Q 029533 73 DDIFCLFQGHIENVALLKQ 91 (192)
Q Consensus 73 ~~~~lv~nG~I~N~~eL~~ 91 (192)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987753
No 57
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=35.52 E-value=26 Score=27.38 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.2
Q ss_pred CcEEEEEEEEEcChHHHHH
Q 029533 73 DDIFCLFQGHIENVALLKQ 91 (192)
Q Consensus 73 ~~~~lv~nG~I~N~~eL~~ 91 (192)
+++.+|+||+|-|.+.+.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987653
No 58
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=49 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=19.6
Q ss_pred hHHHHhccccceeEEEEEeCCCCEE
Q 029533 119 PADQVVRDIQGKFAFILYDSSSKNA 143 (192)
Q Consensus 119 g~~~~~~~L~G~fa~vi~d~~~~~l 143 (192)
|+.++....+|.|++..|--+...+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 5668899999999999996554443
No 59
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=28.08 E-value=67 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.5
Q ss_pred CCEEEEEEcCCCC
Q 029533 140 SKNAFLASDADGS 152 (192)
Q Consensus 140 ~~~l~~aRD~~G~ 152 (192)
+++++++.|.+|.
T Consensus 23 SrRlll~~DgmGF 35 (126)
T PF06339_consen 23 SRRLLLKDDGMGF 35 (126)
T ss_pred EEEEEEccCCCCE
Confidence 3788999998884
No 60
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=27.27 E-value=28 Score=24.37 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=14.7
Q ss_pred EEEcCCCCCcEEEEEecCC
Q 029533 145 LASDADGSVPFFWGTDSEG 163 (192)
Q Consensus 145 ~aRD~~G~rPL~~~~~~~~ 163 (192)
..++.+|++|||-|...|+
T Consensus 28 ~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 28 AMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHhcCCeEEEEecccCC
Confidence 4567899999999986543
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.88 E-value=57 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.8
Q ss_pred cEEEEEEEEEcChHHHHHHh
Q 029533 74 DIFCLFQGHIENVALLKQQY 93 (192)
Q Consensus 74 ~~~lv~nG~I~N~~eL~~~l 93 (192)
.++....|.|||.+.+...|
T Consensus 47 PiV~d~~G~LynKeaile~L 66 (260)
T PF04641_consen 47 PIVSDRLGRLYNKEAILEFL 66 (260)
T ss_pred CeeeCCCCeeEcHHHHHHHH
Confidence 46677899999998876655
No 62
>PRK07225 DNA-directed RNA polymerase subunit B'; Validated
Probab=22.99 E-value=2.5e+02 Score=26.63 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=37.8
Q ss_pred EEEEEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCC--C
Q 029533 76 FCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGS--V 153 (192)
Q Consensus 76 ~lv~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~--r 153 (192)
.|..||.+.-+. .|.+-+++.++.+++.+ .|. .+.=++||...+++++..|. |+ |
T Consensus 6 ~VflNG~~vG~~------------~~~~~lv~~lR~lRr~g---------~i~-~~vsI~~~~~~~ei~I~tD~-GR~~R 62 (605)
T PRK07225 6 KVYVNGKLIGTH------------DDPEELVEEIREARRSG---------EIS-EEVNVSYKEETNEVIINTDA-GRARR 62 (605)
T ss_pred EEEECCEEEEEE------------CCHHHHHHHHHHHHccC---------CCC-CcEEEEEECCCCEEEEEccC-Cccce
Confidence 466688765431 23444555555533222 133 45456678777899999997 74 9
Q ss_pred cEEEEE
Q 029533 154 PFFWGT 159 (192)
Q Consensus 154 PL~~~~ 159 (192)
||+.-.
T Consensus 63 Pl~iv~ 68 (605)
T PRK07225 63 PLIVVE 68 (605)
T ss_pred eEEEEe
Confidence 999864
No 63
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=22.19 E-value=4.6e+02 Score=21.79 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=50.0
Q ss_pred EEEEEE--EEcChHHHHHHhCC-CCCCCHHHHHHHHHHHhhcCCC-ch----HHHHhccccc-eeEEEEEeCCCCEEEEE
Q 029533 76 FCLFQG--HIENVALLKQQYGL-NKTANEVIIVIEAYRTLRDRGP-YP----ADQVVRDIQG-KFAFILYDSSSKNAFLA 146 (192)
Q Consensus 76 ~lv~nG--~I~N~~eL~~~l~~-~~~~~D~e~l~~ly~~~~~~~~-~g----~~~~~~~L~G-~fa~vi~d~~~~~l~~a 146 (192)
+..||| .|||+.-..+-+.. -.+....+.++.++++ +-|- +. +......+.| -|.++++++..++|++.
T Consensus 92 a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~--~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~ 169 (234)
T KOG0876|consen 92 APKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDS--SFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFIL 169 (234)
T ss_pred hhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHH--hhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEE
Confidence 455554 88898766555532 1223334455666654 1111 00 1122334666 69999999887899999
Q ss_pred EcCCCCCcEEEEE
Q 029533 147 SDADGSVPFFWGT 159 (192)
Q Consensus 147 RD~~G~rPL~~~~ 159 (192)
+-.--.-||++..
T Consensus 170 ~T~Na~~P~~~~t 182 (234)
T KOG0876|consen 170 TTYNAGDPLVWTT 182 (234)
T ss_pred ecCCCCCCeeccC
Confidence 9887778988874
No 64
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=20.60 E-value=75 Score=22.08 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=21.3
Q ss_pred CCCCCchhhhHHHHHHHHhHhcCCCCcCe
Q 029533 18 SPQTESACALKNGLLANHFSSVHPGSVTV 46 (192)
Q Consensus 18 ~~~~~~~~~~~~~~m~~~l~~RGpd~~~~ 46 (192)
+..+..........+++.|..|||.++..
T Consensus 41 ~~~t~~~r~~ka~~LLdiL~~rG~~Af~~ 69 (86)
T cd08785 41 SSPRLPIRANRTGRLLDILATRGKRGYVA 69 (86)
T ss_pred CCCccccHHHHHHHHHHHHHhcCcchHHH
Confidence 33444445577899999999999988653
Done!