Query 029533
Match_columns 192
No_of_seqs 180 out of 1496
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 23:52:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 3.9E-35 1.3E-39 266.6 16.2 156 25-191 16-180 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 1.1E-31 3.6E-36 220.6 17.9 155 27-191 14-212 (240)
3 1ao0_A Glutamine phosphoribosy 100.0 8.2E-32 2.8E-36 239.9 18.3 161 26-191 13-215 (459)
4 1ecf_A Glutamine phosphoribosy 100.0 3.6E-30 1.2E-34 231.7 18.7 164 27-191 14-230 (504)
5 2bpl_A Glucosamine--fructose-6 100.0 1.3E-28 4.3E-33 225.9 17.4 158 26-191 13-212 (608)
6 1jgt_A Beta-lactam synthetase; 100.0 3.6E-28 1.2E-32 219.1 13.3 119 63-191 56-193 (513)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 8.6E-26 3E-30 203.1 7.2 127 53-191 27-186 (503)
8 3mdn_A Glutamine aminotransfer 99.9 2.3E-22 8E-27 168.2 11.9 130 54-191 83-245 (274)
9 1te5_A Conserved hypothetical 99.7 8.5E-18 2.9E-22 139.2 6.2 132 54-192 73-245 (257)
10 1ea0_A Glutamate synthase [NAD 99.7 2E-16 6.9E-21 154.5 12.5 129 54-191 204-391 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.6 2.4E-15 8.3E-20 147.2 14.2 157 26-191 145-390 (1520)
12 1vk9_A Conserved hypothetical 49.4 3.2 0.00011 31.0 -0.2 26 128-156 27-52 (151)
13 1ylx_A Hypothetical protein AP 33.5 25 0.00085 24.2 2.2 62 17-78 5-74 (103)
14 2riv_B Thyroxine-binding globu 25.0 96 0.0033 17.2 3.7 21 127-147 12-33 (40)
15 2xn6_B Thyroxine-binding globu 23.6 95 0.0032 16.6 3.7 21 127-147 7-28 (35)
16 3ndd_B Alpha-1-antitrypsin; se 22.7 1E+02 0.0035 16.6 3.7 21 127-147 8-29 (36)
17 1hle_B Horse leukocyte elastas 21.5 97 0.0033 16.0 3.7 19 128-146 7-26 (31)
18 2h4p_B MENT, heterochromatin-a 21.0 1.1E+02 0.0036 16.2 3.7 14 128-141 8-21 (34)
19 4afx_B Protein Z dependent pro 20.6 1.1E+02 0.0039 16.4 3.4 21 127-147 8-29 (36)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=3.9e-35 Score=266.63 Aligned_cols=156 Identities=23% Similarity=0.426 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533 25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L 95 (192)
Q Consensus 25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~ 95 (192)
....+.+|++.|+|||||+.+++..++.+|+ |+|++++ ||+ .+.+++++++|||+|||+.+|+++|. .
T Consensus 16 ~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lg--h~Rlsi~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~ 92 (553)
T 1ct9_A 16 LRKKALELSRLMRHRGPDWSGIYASDNAILA--HERLSIVDVNAGAQPL-YNQQKTHVLAVNGEIYNHQALRAEYGDRYQ 92 (553)
T ss_dssp HHHHHHHHHHTTGGGCBTEEEEEECSSEEEE--EEECCCSCTTTCCSSE-ECTTSCEEEEEEEEETTHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhccCCCcccEEEECCEEEE--EEeeeeeCCCCCCCCe-EeCCCCEEEEEEEEEECHHHHHHHHhccCc
Confidence 3557789999999999999999998888888 9999865 997 55678899999999999999999985 2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533 96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175 (192)
Q Consensus 96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~ 175 (192)
+.+.+|+|+|+++|++ ||. +++++|+|+|||++||..+++++++||++|+|||||+...++.++||||.++|.
T Consensus 93 f~s~sDtEvil~l~~~------~g~-~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~ 165 (553)
T 1ct9_A 93 FQTGSDCEVILALYQE------KGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV 165 (553)
T ss_dssp CCSCCTTHHHHHHHHH------HTT-TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT
T ss_pred cCCCCcHHHHHHHHHH------HHH-HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHH
Confidence 7889999999999997 775 799999999999999998899999999999999999984357899999999998
Q ss_pred hccCceeEEeCCCeee
Q 029533 176 KGCGKSFAPFPKGIYE 191 (192)
Q Consensus 176 ~~~~~~~~~~ppG~~~ 191 (192)
..+ +.+.++|||+++
T Consensus 166 ~~~-~~i~~l~pG~~~ 180 (553)
T 1ct9_A 166 PVC-RTIKEFPAGSYL 180 (553)
T ss_dssp TTC-SEEEECCTTEEE
T ss_pred hhc-CCEEEECCCeEE
Confidence 876 469999999986
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.98 E-value=1.1e-31 Score=220.64 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=129.4
Q ss_pred hHHHHHHHHhHhcCCCCcCee-ec---------------------------CCeEEeecccccccC--------CCceee
Q 029533 27 LKNGLLANHFSSVHPGSVTVN-LG---------------------------SSGVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~-~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~ 70 (192)
..+..|++.|+|||||+.+++ .. +..+|+ |+|++++ ||+ .+
T Consensus 14 ~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qP~-~~ 90 (240)
T 1xff_A 14 EILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIA--HTRWATHGEPSEVNAHPH-VS 90 (240)
T ss_dssp HHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEE--EEECCSSSCSSTTTSSCE-EE
T ss_pred HHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEE--EEeccCCCCCCcccCCCc-cc
Confidence 578899999999999999988 52 345555 9999854 897 33
Q ss_pred eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCC-CCE
Q 029533 71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSS-SKN 142 (192)
Q Consensus 71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~-~~~ 142 (192)
++++++|||+|||+.+|+++|. . +.+.+|+|+++++|++..+.+. .++++++++|+|+|||++||.. .++
T Consensus 91 --~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~ 168 (240)
T 1xff_A 91 --EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDT 168 (240)
T ss_dssp --TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTC
T ss_pred --CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCE
Confidence 7899999999999999999883 3 7899999999999987432121 2345799999999999999985 689
Q ss_pred EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
|+++||+ |||||+.. ++.++||||.++|...+. .+.++|||+++
T Consensus 169 l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pG~~~ 212 (240)
T 1xff_A 169 LLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIA 212 (240)
T ss_dssp EEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEE
T ss_pred EEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCC-eEEEECCCEEE
Confidence 9999997 99999985 577999999999988875 48999999986
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.98 E-value=8.2e-32 Score=239.88 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=132.2
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~ 70 (192)
...+..|+..|+|||||+.+++.. +..++| |+|++++ ||+...
T Consensus 13 ~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~ig--H~R~at~g~~~~~n~qP~~~~ 90 (459)
T 1ao0_A 13 PQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIG--HVRYATAGGGGYENVQPLLFR 90 (459)
T ss_dssp HHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEE--EEECCC----CGGGSSSEEEB
T ss_pred HHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEE--EEecCCCCCCCccCCCCceec
Confidence 345678999999999999998763 234455 9999853 998432
Q ss_pred --eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEE
Q 029533 71 --VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNA 143 (192)
Q Consensus 71 --~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l 143 (192)
.+++++++|||+|+|+.+|+++|. . +.+.+|+|+++++|.+..+... .++.+++++|+|+|||++|| .++|
T Consensus 91 ~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d--~~~l 168 (459)
T 1ao0_A 91 SQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEM 168 (459)
T ss_dssp CTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEEC--SSEE
T ss_pred cCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEe--CCEE
Confidence 457899999999999999999883 3 8899999999999986210000 13458999999999999999 4799
Q ss_pred EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+++||++|+|||||+.. ++.++||||.++|.....+.++++|||+++
T Consensus 169 ~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~ 215 (459)
T 1ao0_A 169 IVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEML 215 (459)
T ss_dssp EEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred EEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEE
Confidence 99999999999999996 578999999999988766779999999986
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=3.6e-30 Score=231.70 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=131.9
Q ss_pred hHHHHHHHHhHhcCCCCcCeeecC-C-------------------------eEEeecccccccC--------CCceeeeC
Q 029533 27 LKNGLLANHFSSVHPGSVTVNLGS-S-------------------------GVIAYSLNRQNPL--------LPRLFAVV 72 (192)
Q Consensus 27 ~~~~~m~~~l~~RGpd~~~~~~~~-~-------------------------~~l~~~~~r~~~~--------qP~~~~~~ 72 (192)
..+..|+..|+|||||+.+++... + +.++++|+|++++ ||+..+..
T Consensus 14 ~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT~G~~~~~n~QP~~~~~~ 93 (504)
T 1ecf_A 14 QSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSP 93 (504)
T ss_dssp HHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTTBCTTSCCSCEEECSS
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCcCCCCCccccCCeEeccC
Confidence 467899999999999999987642 1 1234449999853 99844444
Q ss_pred CcEEEEEEEEEcChHHHHHHhC----C-CCCCCHHHHHHHHHHHhhcC-CC---------chHHHHhccccceeEEEEEe
Q 029533 73 DDIFCLFQGHIENVALLKQQYG----L-NKTANEVIIVIEAYRTLRDR-GP---------YPADQVVRDIQGKFAFILYD 137 (192)
Q Consensus 73 ~~~~lv~nG~I~N~~eL~~~l~----~-~~~~~D~e~l~~ly~~~~~~-~~---------~g~~~~~~~L~G~fa~vi~d 137 (192)
.+++++|||+|+|+.+|+++|. . +.+.+|+|+++++|.+..+. +. .++.+++++|+|+|||++|+
T Consensus 94 ~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~ 173 (504)
T 1ecf_A 94 YGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMI 173 (504)
T ss_dssp SCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred CCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEE
Confidence 5699999999999999999872 3 78999999999999763211 10 13457899999999999997
Q ss_pred CCCCEEEEEEcCCCCCcEEEEEec--C--CeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 138 SSSKNAFLASDADGSVPFFWGTDS--E--GHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 138 ~~~~~l~~aRD~~G~rPL~~~~~~--~--~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
. .++|+++|||+|+|||||+... + +.++||||.++|...+.+.+++++||+++
T Consensus 174 ~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v 230 (504)
T 1ecf_A 174 I-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAI 230 (504)
T ss_dssp T-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred c-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEE
Confidence 5 4589999999999999999862 3 37999999999998877779999999986
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.96 E-value=1.3e-28 Score=225.92 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=131.1
Q ss_pred hhHHHHHHHHhHhcCCCCcCeeec--CC------------------------eEEeecccccccC--------CCceeee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNLG--SS------------------------GVIAYSLNRQNPL--------LPRLFAV 71 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~~--~~------------------------~~l~~~~~r~~~~--------qP~~~~~ 71 (192)
...+..|++.|.|||||+.+++.. ++ +.++++|+||+++ ||+ .+
T Consensus 13 ~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at~g~~~~~n~qP~-~~- 90 (608)
T 2bpl_A 13 AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH-VS- 90 (608)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCCSSSCCGGGCSCE-EE-
T ss_pred HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCCCCCCCccCCCCc-cC-
Confidence 457889999999999999998754 11 2234449999854 997 33
Q ss_pred CCcEEEEEEEEEcChHHHHHHh---CC-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCCC-CEE
Q 029533 72 VDDIFCLFQGHIENVALLKQQY---GL-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA 143 (192)
Q Consensus 72 ~~~~~lv~nG~I~N~~eL~~~l---~~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~~-~~l 143 (192)
++++++|||+|+|+.+|+++| +. +.+.+|+|+++++|++..+.|. .++++++++|+|+|||++||... ++|
T Consensus 91 -~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l 169 (608)
T 2bpl_A 91 -EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTL 169 (608)
T ss_dssp -TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCE
T ss_pred -CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEE
Confidence 789999999999999999988 34 8899999999999987432231 24567999999999999999887 899
Q ss_pred EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533 144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191 (192)
Q Consensus 144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~ 191 (192)
+++||+ |||||+.. ++.++||||.++|...+. .+.+++||+++
T Consensus 170 ~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~-~~~~l~~G~i~ 212 (608)
T 2bpl_A 170 LAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIA 212 (608)
T ss_dssp EEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCC-EEEECCTTCEE
T ss_pred EEEECC---CceEEEEe-CCeEEEEechHHHHhcCC-eEEEECCCeEE
Confidence 999997 99999995 577999999999988874 68999999986
No 6
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.95 E-value=3.6e-28 Score=219.11 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=103.8
Q ss_pred cCCCceeee---CCcEEEEEEEEEcChHHHHHHhCC-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeC
Q 029533 63 PLLPRLFAV---VDDIFCLFQGHIENVALLKQQYGL-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDS 138 (192)
Q Consensus 63 ~~qP~~~~~---~~~~~lv~nG~I~N~~eL~~~l~~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~ 138 (192)
..||+..+. +++++++|||+|||+.+|+++|+. +.+.+|+|+|+++|++ ||. +++++|+|+|||++||.
T Consensus 56 ~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~------~g~-~~~~~l~G~fA~~i~d~ 128 (513)
T 1jgt_A 56 VAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER------YDL-HAFRLVNGRFATVVRTG 128 (513)
T ss_dssp SCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH------HGG-GGGGTCCEEEEEEEEET
T ss_pred cCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH------HhH-HhHhhcCeeEEEEEEEC
Confidence 358873322 378999999999999999999864 7899999999999998 786 79999999999999997
Q ss_pred CCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc---------------CceeEEeCCCeee
Q 029533 139 SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---------------GKSFAPFPKGIYE 191 (192)
Q Consensus 139 ~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~---------------~~~~~~~ppG~~~ 191 (192)
. +++++||++|+|||||+.. ++.++||||+++|...+ .+.++.+||||++
T Consensus 129 ~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l 193 (513)
T 1jgt_A 129 D--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVM 193 (513)
T ss_dssp T--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEE
T ss_pred C--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEE
Confidence 4 4999999999999999985 68899999999998876 2579999999986
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.92 E-value=8.6e-26 Score=203.13 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=108.1
Q ss_pred EEeecccccccC-----CCceeeeCCcEEEEEEEEEcChH---HHHHHhC-CCCCCCHHHHHHHHHHHhhcCCCchHHHH
Q 029533 53 VIAYSLNRQNPL-----LPRLFAVVDDIFCLFQGHIENVA---LLKQQYG-LNKTANEVIIVIEAYRTLRDRGPYPADQV 123 (192)
Q Consensus 53 ~l~~~~~r~~~~-----qP~~~~~~~~~~lv~nG~I~N~~---eL~~~l~-~~~~~~D~e~l~~ly~~~~~~~~~g~~~~ 123 (192)
.++++|+|+++. ||+ .+.+++++++ |+|||+. +|+++|. .+.+.+|+|+|+++|++ ||. ++
T Consensus 27 ~~~igh~R~~t~~~~~~QP~-~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~------~g~-~~ 96 (503)
T 1q15_A 27 GEALSNGYLFIEQNGHYQKC-EMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR------LGA-NA 96 (503)
T ss_dssp EEEETTEEEEEETTCCEEEE-ECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH------HCG-GG
T ss_pred ceeEeeeeEEEcCCCCCCCc-CcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH------HHH-HH
Confidence 345559999854 997 4556677777 9999999 9999885 36788999999999997 776 79
Q ss_pred hccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCe-----------------EEEEecchhhhhc-------cC
Q 029533 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGH-----------------LVLSDDVEIVKKG-------CG 179 (192)
Q Consensus 124 ~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~-----------------~~faSe~~al~~~-------~~ 179 (192)
+++|+|+|||++||..++ |+++||++|+|||||+.. ++. ++||||.++|... ..
T Consensus 97 l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~ 174 (503)
T 1q15_A 97 LALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPV 174 (503)
T ss_dssp GGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSB
T ss_pred HHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCccc
Confidence 999999999999998878 999999999999999985 566 8999999999875 12
Q ss_pred ceeEEeCCCeee
Q 029533 180 KSFAPFPKGIYE 191 (192)
Q Consensus 180 ~~~~~~ppG~~~ 191 (192)
+.++.+|||+++
T Consensus 175 ~~v~~l~pG~~~ 186 (503)
T 1q15_A 175 KNAQRLKPGAVH 186 (503)
T ss_dssp TTEEECCSSEEE
T ss_pred CCeEEECCCeEE
Confidence 469999999986
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.88 E-value=2.3e-22 Score=168.19 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=97.1
Q ss_pred EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-----C----CCCCCHHHHHHHHHHHhh-cC
Q 029533 54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-----L----NKTANEVIIVIEAYRTLR-DR 115 (192)
Q Consensus 54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-----~----~~~~~D~e~l~~ly~~~~-~~ 115 (192)
++++|+|+++. ||+. . ++++++|||+|+|+.+|+++|. . +.+.+|+|+++++|.+.. +.
T Consensus 83 ~~igHvR~AT~g~~s~~n~qPf~-~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 83 LFLSHVRASTGSCISRNNCHPFA-A--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEC------------CCCEE-E--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred EEEEEEccccCCCCcccCCCCcc-c--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 44559999854 9973 2 6899999999999999998873 1 268899999999995421 11
Q ss_pred CC-chHHHHhccccce-----------eEEEEEeCCCCEEEEEEcC-CCCCcEEEEEecC--CeEEEEecchhhhhccCc
Q 029533 116 GP-YPADQVVRDIQGK-----------FAFILYDSSSKNAFLASDA-DGSVPFFWGTDSE--GHLVLSDDVEIVKKGCGK 180 (192)
Q Consensus 116 ~~-~g~~~~~~~L~G~-----------fa~vi~d~~~~~l~~aRD~-~G~rPL~~~~~~~--~~~~faSe~~al~~~~~~ 180 (192)
.+ .++.+++++|+|+ |+|+++|. ++|+++||+ .|++||+|+...+ +.++||||. |...+ +
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~-~ 234 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE-G 234 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC-S
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC-c
Confidence 11 2456799999998 99999984 799999998 9999977776543 689999999 43333 4
Q ss_pred eeEEeCCCeee
Q 029533 181 SFAPFPKGIYE 191 (192)
Q Consensus 181 ~~~~~ppG~~~ 191 (192)
.++++|||+++
T Consensus 235 ~~~~v~pGeiv 245 (274)
T 3mdn_A 235 DWTELRPGRML 245 (274)
T ss_dssp CCEECCSSEEE
T ss_pred eEEEECcCEEE
Confidence 59999999986
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.70 E-value=8.5e-18 Score=139.23 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=97.6
Q ss_pred EeecccccccC--------CCceeee-CCcEEEEEEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcC----CC--c
Q 029533 54 IAYSLNRQNPL--------LPRLFAV-VDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDR----GP--Y 118 (192)
Q Consensus 54 l~~~~~r~~~~--------qP~~~~~-~~~~~lv~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~----~~--~ 118 (192)
++++|+|+++. ||+.... .++++++|||.|.|+.+ +.++..+.+.+|+|++++++.+..+. .+ .
T Consensus 73 ~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 73 TVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 45559999854 9984332 35799999999999998 66544488999999999998753211 11 2
Q ss_pred hHHHHhcccc------ceeEEEEEeCCCCEEEEEEc----------CCCCCcEEE-------EE---ecCCeEEEEecch
Q 029533 119 PADQVVRDIQ------GKFAFILYDSSSKNAFLASD----------ADGSVPFFW-------GT---DSEGHLVLSDDVE 172 (192)
Q Consensus 119 g~~~~~~~L~------G~fa~vi~d~~~~~l~~aRD----------~~G~rPL~~-------~~---~~~~~~~faSe~~ 172 (192)
.+.++++++. |.|++++.|. ++|+++|| |+|.|||+. +. ..++.++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 4445666665 9999999884 79999999 999999975 31 113468999995
Q ss_pred hhhhccCceeEEeCCCeeeC
Q 029533 173 IVKKGCGKSFAPFPKGIYEI 192 (192)
Q Consensus 173 al~~~~~~~~~~~ppG~~~~ 192 (192)
|. . .+.++++|||++++
T Consensus 229 -l~-~-~~~wr~v~pGe~v~ 245 (257)
T 1te5_A 229 -LT-D-NENWTLQQSGEWVL 245 (257)
T ss_dssp -SS-S-SSSCEEECTTCEEE
T ss_pred -cC-C-CCCeeEeCCCEEEE
Confidence 43 2 35699999999863
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.67 E-value=2e-16 Score=154.53 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=100.4
Q ss_pred EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHh-------------------C-C-CCCCCHHHH
Q 029533 54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQY-------------------G-L-NKTANEVII 104 (192)
Q Consensus 54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l-------------------~-~-~~~~~D~e~ 104 (192)
++..|+|.++. ||+. +++|||+|.|...+++.+ + . +.+.+|+|+
T Consensus 204 ~aigH~RySTnt~p~w~~AQPf~-------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSev 276 (1479)
T 1ea0_A 204 FAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGS 276 (1479)
T ss_dssp EEEEEECCCSCSCCCSTTSSCCS-------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHH
T ss_pred EEEeeecccCCCCCCcccCCccE-------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHH
Confidence 44559999853 8972 399999999999998653 1 2 678899999
Q ss_pred HHHHHHHhhcCCC---chH-------------------------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEE
Q 029533 105 VIEAYRTLRDRGP---YPA-------------------------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFF 156 (192)
Q Consensus 105 l~~ly~~~~~~~~---~g~-------------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~ 156 (192)
+.++++.+...+. ..+ ..+++.++|+||+++.| .+.++++|||.|.|||.
T Consensus 277 ld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~d--g~~l~a~~DrnGlRPl~ 354 (1479)
T 1ea0_A 277 LDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRPMR 354 (1479)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSCCE
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEe--CCEEEEEecCCCCcceE
Confidence 9666554322220 011 13468999999999987 48999999999999999
Q ss_pred EEEecCCeEEEEecchhhhhccCceeE--EeCCCeee
Q 029533 157 WGTDSEGHLVLSDDVEIVKKGCGKSFA--PFPKGIYE 191 (192)
Q Consensus 157 ~~~~~~~~~~faSe~~al~~~~~~~~~--~~ppG~~~ 191 (192)
|+.++|+.+++|||..+|...+.+.++ ++.||+++
T Consensus 355 ~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv 391 (1479)
T 1ea0_A 355 YTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMI 391 (1479)
T ss_dssp EEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEE
T ss_pred EEEECCCEEEEEcccccccCcchheeeccCCCCCeEE
Confidence 999767789999999999777666667 99999986
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.63 E-value=2.4e-15 Score=147.24 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=114.2
Q ss_pred hhHHHHHHHHhHhcCCCCcCeee-cC--------------------------CeEEeecccccccC--------CCceee
Q 029533 26 ALKNGLLANHFSSVHPGSVTVNL-GS--------------------------SGVIAYSLNRQNPL--------LPRLFA 70 (192)
Q Consensus 26 ~~~~~~m~~~l~~RGpd~~~~~~-~~--------------------------~~~l~~~~~r~~~~--------qP~~~~ 70 (192)
...+....+.+.||+.++..+.. +. .+.++..|+|.++. ||+.
T Consensus 145 ~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~-- 222 (1520)
T 1ofd_A 145 DRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR-- 222 (1520)
T ss_dssp HHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS--
T ss_pred HHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh--
Confidence 34567788999999854332221 10 12344559999854 9972
Q ss_pred eCCcEEEEEEEEEcChHHHH------HH------h--------C--CCCCCCHHHHHHHHHHHhhcCCC---chH-----
Q 029533 71 VVDDIFCLFQGHIENVALLK------QQ------Y--------G--LNKTANEVIIVIEAYRTLRDRGP---YPA----- 120 (192)
Q Consensus 71 ~~~~~~lv~nG~I~N~~eL~------~~------l--------~--~~~~~~D~e~l~~ly~~~~~~~~---~g~----- 120 (192)
+++|||+|.|...++ +. + + .+.+.+|+|++.++++.+...+. ..+
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP 297 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP 297 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence 399999999887777 21 1 2 27889999999766653322220 011
Q ss_pred ----------------------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc
Q 029533 121 ----------------------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC 178 (192)
Q Consensus 121 ----------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~ 178 (192)
..+++.++|+||+++.|. +.++++|||.|.|||.|+.++|+.+++|||..+|...+
T Consensus 298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~ 375 (1520)
T 1ofd_A 298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE 375 (1520)
T ss_dssp CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence 112588999999999884 89999999999999999998667899999999997777
Q ss_pred CceeE--EeCCCeee
Q 029533 179 GKSFA--PFPKGIYE 191 (192)
Q Consensus 179 ~~~~~--~~ppG~~~ 191 (192)
.+.++ ++.||+++
T Consensus 376 a~~vrkg~l~PGemv 390 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMI 390 (1520)
T ss_dssp GGEEEEEECCTTCEE
T ss_pred hheeeccCCCCCeEE
Confidence 67777 99999986
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=49.43 E-value=3.2 Score=31.02 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=21.0
Q ss_pred cceeEEEEEeCCCCEEEEEEcCCCCCcEE
Q 029533 128 QGKFAFILYDSSSKNAFLASDADGSVPFF 156 (192)
Q Consensus 128 ~G~fa~vi~d~~~~~l~~aRD~~G~rPL~ 156 (192)
+|.|++++.+ .+.++-..++ |++|||
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~ 52 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVV 52 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHH
Confidence 5799999954 4678887776 999998
No 13
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=33.52 E-value=25 Score=24.16 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCCCCCchhhhHHHHHHHHhHhcCCCCcCeee----cCCeEEeecccccc----cCCCceeeeCCcEEEE
Q 029533 17 QSPQTESACALKNGLLANHFSSVHPGSVTVNL----GSSGVIAYSLNRQN----PLLPRLFAVVDDIFCL 78 (192)
Q Consensus 17 ~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~----~~~~~l~~~~~r~~----~~qP~~~~~~~~~~lv 78 (192)
++..++.........|-..|...|-|+.+++- ++.+++||+-..-. ++.|++-+.++++++.
T Consensus 5 ef~~Re~ii~el~~~~~~~l~~Ygld~vgifEEeGegn~YY~GYTVkKdd~~~~ih~PfikdedG~La~e 74 (103)
T 1ylx_A 5 EFAPRSVVIEEFIDTLEPMMEAYGLDQVGIFEEHGEGNRYYVGYTINKDDEMITIHMPFVKNERGELALE 74 (103)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHTCSCEEEEEEECSTTEEEEEEEEEETTEEEEEEEEEEECTTSCEEEC
T ss_pred hhccHHHHHHHHHHHHHHHHHHhCCcceeeeeecCCCceEEEEEEEccCCeEEEEeccceecCCCceeee
Confidence 34455555666677788888899999999874 45788887643221 3367755666666554
No 14
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=24.95 E-value=96 Score=17.19 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=13.2
Q ss_pred ccceeEEEEEeCCCCE-EEEEE
Q 029533 127 IQGKFAFILYDSSSKN-AFLAS 147 (192)
Q Consensus 127 L~G~fa~vi~d~~~~~-l~~aR 147 (192)
.+=.|-|+|+|..++. ||++|
T Consensus 12 ~drPFlf~I~~~~t~~iLF~G~ 33 (40)
T 2riv_B 12 IDRSFMLLILERSTRSILFLGK 33 (40)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEeCCCCcEEEEEE
Confidence 4667888888766553 45544
No 15
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=23.58 E-value=95 Score=16.63 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=12.1
Q ss_pred ccceeEEEEEeCCCCE-EEEEE
Q 029533 127 IQGKFAFILYDSSSKN-AFLAS 147 (192)
Q Consensus 127 L~G~fa~vi~d~~~~~-l~~aR 147 (192)
.+=.|-|+|+|..++. ||++|
T Consensus 7 ~drPFlf~I~~~~t~~iLF~G~ 28 (35)
T 2xn6_B 7 IDRSFMLLILERSTRSILFLGK 28 (35)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEECCCCcEEEEEE
Confidence 3456777777765543 34443
No 16
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=22.66 E-value=1e+02 Score=16.65 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=11.9
Q ss_pred ccceeEEEEEeCCCC-EEEEEE
Q 029533 127 IQGKFAFILYDSSSK-NAFLAS 147 (192)
Q Consensus 127 L~G~fa~vi~d~~~~-~l~~aR 147 (192)
++-.|-|+|+|..++ -|+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 3ndd_B 8 FNKPFVFLMIEQNTKSPLFMGK 29 (36)
T ss_dssp CCSCEEEEEEETTTCCEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 355677777776543 344444
No 17
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=21.50 E-value=97 Score=16.00 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=10.9
Q ss_pred cceeEEEEEeCCCCE-EEEE
Q 029533 128 QGKFAFILYDSSSKN-AFLA 146 (192)
Q Consensus 128 ~G~fa~vi~d~~~~~-l~~a 146 (192)
+=.|-|+|+|..++. |+++
T Consensus 7 drPFlf~I~~~~t~~iLF~G 26 (31)
T 1hle_B 7 DHPFIFFIRHNPSANILFLG 26 (31)
T ss_dssp CSCEEEEEEETTTTEEEEEE
T ss_pred eCCEEEEEEECCCCcEEEEE
Confidence 446777777765543 3443
No 18
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=20.98 E-value=1.1e+02 Score=16.23 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=8.6
Q ss_pred cceeEEEEEeCCCC
Q 029533 128 QGKFAFILYDSSSK 141 (192)
Q Consensus 128 ~G~fa~vi~d~~~~ 141 (192)
+=.|-|+|+|..++
T Consensus 8 drPFlf~I~~~~t~ 21 (34)
T 2h4p_B 8 DHPFHFFIRHNKSK 21 (34)
T ss_dssp CSCEEEEEEETTTT
T ss_pred cCCEEEEEEECCCC
Confidence 44667777766554
No 19
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=20.64 E-value=1.1e+02 Score=16.44 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=12.6
Q ss_pred ccceeEEEEEeCCCCE-EEEEE
Q 029533 127 IQGKFAFILYDSSSKN-AFLAS 147 (192)
Q Consensus 127 L~G~fa~vi~d~~~~~-l~~aR 147 (192)
++-.|-|+|+|..++. |+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 4afx_B 8 IDRPFHFMIYEETSGMLLFLGR 29 (36)
T ss_dssp CCSCEEEEEEETTTTEEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 4557777777765543 44444
Done!