BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029535
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 93 GQTLLGWCQIPVNDIGFPPGGS--VRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDTSLD 150
G+ +LG+CQ+ +++ +PPG + V +++ G G+V++ VPD L
Sbjct: 559 GERVLGFCQLYLSEKDYPPGYAFDVEAMNF---PTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 151 ACHVIGIPLI 160
C GI +I
Sbjct: 616 -CRTAGIRVI 624
>pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|C Chain C, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|D Chain D, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|E Chain E, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|F Chain F, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|G Chain G, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
pdb|3LY2|H Chain H, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
Wi Coumarin-Based Inhibitor
Length = 357
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv
Length = 337
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 4 SRFGVNTENEDHLAKELEDLNKWGLNIFN 32
>pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex
With A Pyrazolopyridine Inhibitor
pdb|3FRG|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3GWT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A Quinoline Inhibitor
pdb|3O56|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
pdb|3O57|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex With A 5- Heterocycle Pyrazolopyridine Inhibitor
Length = 353
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 4 SRFGVNTENEDHLAKELEDLNKWGLNIFN 32
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 17 TLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWG 61
+ FS++ + T A T G C +RTR+ + ++PT+
Sbjct: 150 SAFSNKGFTTKELVTLSGAHTIGQAQCTAFRTRIYNESNIDPTYA 194
>pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XLZ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Filaminast
pdb|1XM4|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Piclamilast
pdb|1XMU|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Roflumilast
pdb|1XMY|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Rolipram
Length = 398
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XM6|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R)- Mesopram
pdb|1XN0|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XN0|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With (R,S)- Rolipram
pdb|1XOS|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Sildenafil
Length = 398
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XLX|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Cilomilast
pdb|1XOT|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1XOT|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Vardenafil
pdb|1Y2H|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2H|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 1-(2-
Chloro-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
Length = 398
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|1P6F|A Chain A, Structure Of The Human Natural Cytotoxicity Receptor
Nkp46
Length = 242
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 63 KFYVPTDCNAFFANRYACIY 82
KFY+P D N+ A +Y+CIY
Sbjct: 61 KFYIP-DMNSRMAGQYSCIY 79
>pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
pdb|3HMV|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b In
Complex Tetrahydrobenzothiophene Inhibitor
Length = 378
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 4 SRFGVNTENEDHLAKELEDLNKWGLNIFN 32
>pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
pdb|3G45|B Chain B, Crystal Structure Of Human Phosphodiesterase 4b With
Regulatory Domain And D155988
Length = 421
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 82 SRFGVNTENEDHLAKELEDLNKWGLNIFN 110
>pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO6|B Chain B, Crystal Structure Of Pde4b2b Complexed With Rolipram (r &
S)
pdb|1RO9|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1RO9|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With 8-Br-Amp
pdb|1ROR|A Chain A, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
pdb|1ROR|B Chain B, Crystal Structures Of The Catalytic Domain Of
Phosphodiesterase 4b2b Complexed With Amp
Length = 378
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 4 SRFGVNTENEDHLAKELEDLNKWGLNIFN 32
>pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
pdb|1TB5|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b In Complex
With Amp
Length = 381
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 7 SRFGVNTENEDHLAKELEDLNKWGLNIFN 35
>pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509.
pdb|3KKT|B Chain B, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)-
Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp
Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of
The C-Terminal Helix Residues 502- 509
Length = 398
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 24 SRFGVNTENEDHLAKELEDLNKWGLNIFN 52
>pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b
pdb|1F0J|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4b2b
Length = 377
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 163 NRLGVNCEEESRLRNEREVSPTYGLNLTN 191
+R GVN E E L E E +GLN+ N
Sbjct: 3 SRFGVNTENEDHLAKELEDLNKWGLNIFN 31
>pdb|1OLL|A Chain A, Extracellular Region Of The Human Receptor Nkp46
Length = 188
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 63 KFYVPTDCNAFFANRYACIY 82
KFY+P D N+ A +Y+CIY
Sbjct: 58 KFYIP-DMNSRMAGQYSCIY 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,114,200
Number of Sequences: 62578
Number of extensions: 262219
Number of successful extensions: 332
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 18
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)