Query 029535
Match_columns 192
No_of_seqs 148 out of 1088
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 14:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-25 3.3E-30 170.7 14.2 117 1-140 4-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 7.4E-24 1.6E-28 160.2 12.0 122 1-136 2-125 (125)
3 cd04022 C2A_MCTP_PRT_plant C2 99.9 1.6E-22 3.5E-27 153.7 14.8 124 1-142 2-127 (127)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 1.9E-22 4E-27 153.2 13.9 124 1-139 1-126 (126)
5 cd04019 C2C_MCTP_PRT_plant C2 99.9 2.3E-22 4.9E-27 158.3 14.1 125 1-143 2-134 (150)
6 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.3E-21 2.8E-26 147.4 14.5 120 1-142 2-121 (121)
7 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 2E-21 4.4E-26 148.2 14.8 128 1-141 2-133 (133)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.6E-21 3.4E-26 149.6 13.7 113 1-136 2-125 (126)
9 cd08681 C2_fungal_Inn1p-like C 99.9 1.1E-21 2.4E-26 146.8 12.2 116 1-140 3-118 (118)
10 cd08395 C2C_Munc13 C2 domain t 99.9 2.1E-21 4.5E-26 147.8 13.2 111 1-124 2-112 (120)
11 cd08378 C2B_MCTP_PRT_plant C2 99.9 2.1E-21 4.6E-26 147.2 13.1 117 1-141 2-120 (121)
12 cd04044 C2A_Tricalbin-like C2 99.9 3.7E-21 8E-26 144.4 12.8 121 1-142 4-124 (124)
13 cd08400 C2_Ras_p21A1 C2 domain 99.9 1.2E-20 2.6E-25 143.8 14.6 117 1-142 6-124 (126)
14 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.8E-20 6E-25 139.0 13.8 115 1-140 3-118 (119)
15 cd08678 C2_C21orf25-like C2 do 99.8 6.3E-20 1.4E-24 139.4 15.9 122 1-145 1-124 (126)
16 cd04015 C2_plant_PLD C2 domain 99.8 3.4E-20 7.5E-25 146.9 14.8 121 1-141 9-158 (158)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 5.5E-20 1.2E-24 139.5 15.0 119 1-140 2-121 (121)
18 cd04036 C2_cPLA2 C2 domain pre 99.8 3.6E-20 7.8E-25 139.1 13.7 117 1-141 2-118 (119)
19 cd04024 C2A_Synaptotagmin-like 99.8 6.5E-20 1.4E-24 138.5 12.9 123 1-140 3-128 (128)
20 cd08375 C2_Intersectin C2 doma 99.8 9.8E-20 2.1E-24 140.9 13.9 117 1-140 17-135 (136)
21 cd08373 C2A_Ferlin C2 domain f 99.8 2.3E-19 4.9E-24 136.3 14.9 120 5-146 2-121 (127)
22 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.8E-20 1.7E-24 140.2 12.0 111 1-122 17-127 (128)
23 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.3E-19 4.9E-24 133.8 13.8 114 1-141 2-115 (116)
24 cd08688 C2_KIAA0528-like C2 do 99.8 9.8E-20 2.1E-24 135.4 11.6 108 1-124 1-109 (110)
25 cd08677 C2A_Synaptotagmin-13 C 99.8 6.1E-20 1.3E-24 139.3 10.5 92 1-108 16-107 (118)
26 cd08382 C2_Smurf-like C2 domai 99.8 2.4E-19 5.1E-24 135.9 13.8 116 1-138 2-122 (123)
27 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.5E-19 5.4E-24 135.2 13.6 116 1-139 2-123 (123)
28 KOG1030 Predicted Ca2+-depende 99.8 5.5E-20 1.2E-24 146.0 9.6 89 1-109 8-96 (168)
29 cd04017 C2D_Ferlin C2 domain f 99.8 5.8E-19 1.3E-23 135.8 14.9 126 1-143 3-134 (135)
30 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 6.5E-19 1.4E-23 133.1 14.2 118 1-139 2-120 (121)
31 cd04049 C2_putative_Elicitor-r 99.8 3.4E-19 7.4E-24 134.6 12.7 94 1-109 3-96 (124)
32 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.7E-19 5.7E-24 136.4 12.1 108 1-122 17-124 (125)
33 cd08381 C2B_PI3K_class_II C2 d 99.8 2.2E-19 4.7E-24 136.4 11.3 106 1-122 15-121 (122)
34 cd08393 C2A_SLP-1_2 C2 domain 99.8 2E-19 4.3E-24 137.0 10.8 108 1-122 17-124 (125)
35 cd04011 C2B_Ferlin C2 domain s 99.8 2.8E-19 6E-24 132.9 11.4 106 1-125 6-111 (111)
36 cd04046 C2_Calpain C2 domain p 99.8 8.7E-19 1.9E-23 133.3 14.0 116 1-143 5-124 (126)
37 cd04043 C2_Munc13_fungal C2 do 99.8 1.4E-18 3E-23 131.3 14.9 120 1-142 3-122 (126)
38 cd04014 C2_PKC_epsilon C2 doma 99.8 1.3E-18 2.8E-23 133.1 14.8 118 1-142 6-130 (132)
39 cd04050 C2B_Synaptotagmin-like 99.8 4.8E-19 1E-23 130.5 10.7 101 1-124 2-102 (105)
40 cd08691 C2_NEDL1-like C2 domai 99.8 2.7E-18 5.9E-23 133.4 14.7 120 2-138 4-136 (137)
41 cd04010 C2B_RasA3 C2 domain se 99.8 1.2E-18 2.6E-23 137.0 12.5 113 1-126 2-124 (148)
42 cd08388 C2A_Synaptotagmin-4-11 99.8 1.5E-18 3.3E-23 132.7 12.6 108 1-122 18-126 (128)
43 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.6E-18 3.4E-23 129.5 12.4 116 1-140 3-121 (121)
44 cd08680 C2_Kibra C2 domain fou 99.8 8.9E-19 1.9E-23 133.9 10.9 108 1-122 16-124 (124)
45 cd04041 C2A_fungal C2 domain f 99.8 7.9E-19 1.7E-23 130.7 10.1 97 1-109 3-99 (111)
46 cd04021 C2_E3_ubiquitin_ligase 99.8 3.7E-18 8E-23 129.9 13.8 117 1-138 4-124 (125)
47 cd08394 C2A_Munc13 C2 domain f 99.8 1.8E-18 4E-23 132.7 11.5 98 1-124 4-101 (127)
48 cd04039 C2_PSD C2 domain prese 99.8 1.6E-18 3.6E-23 129.2 10.6 94 1-109 3-97 (108)
49 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.4E-18 5.2E-23 129.8 11.5 105 1-122 18-122 (124)
50 cd04027 C2B_Munc13 C2 domain s 99.8 4.7E-18 1E-22 129.5 13.0 113 1-138 3-127 (127)
51 cd04028 C2B_RIM1alpha C2 domai 99.8 3.5E-18 7.6E-23 134.2 12.3 108 1-125 31-139 (146)
52 cd08389 C2A_Synaptotagmin-14_1 99.8 2.4E-18 5.3E-23 130.9 11.0 105 1-123 18-123 (124)
53 PLN03008 Phospholipase D delta 99.8 2.4E-18 5.2E-23 163.9 13.5 107 22-148 76-184 (868)
54 cd00275 C2_PLC_like C2 domain 99.8 1E-17 2.2E-22 126.3 14.3 123 1-140 4-127 (128)
55 cd08387 C2A_Synaptotagmin-8 C2 99.8 4.4E-18 9.6E-23 128.5 11.7 106 1-123 18-123 (124)
56 cd08521 C2A_SLP C2 domain firs 99.8 5.2E-18 1.1E-22 127.4 11.6 108 1-122 16-123 (123)
57 cd04040 C2D_Tricalbin-like C2 99.8 1E-17 2.2E-22 124.5 12.8 114 1-136 1-114 (115)
58 cd08685 C2_RGS-like C2 domain 99.8 5.7E-18 1.2E-22 128.2 11.0 105 1-122 14-119 (119)
59 cd04018 C2C_Ferlin C2 domain t 99.8 7.9E-18 1.7E-22 132.8 12.2 109 1-124 2-125 (151)
60 cd04030 C2C_KIAA1228 C2 domain 99.8 1.1E-17 2.3E-22 126.5 11.8 107 1-122 18-126 (127)
61 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.1E-17 4.5E-22 124.7 12.2 107 1-123 18-124 (125)
62 cd08383 C2A_RasGAP C2 domain ( 99.7 5.3E-17 1.2E-21 120.7 13.8 115 1-140 2-117 (117)
63 cd04013 C2_SynGAP_like C2 doma 99.7 5.4E-17 1.2E-21 127.4 14.4 120 1-147 13-145 (146)
64 cd04031 C2A_RIM1alpha C2 domai 99.7 2.2E-17 4.7E-22 124.3 11.3 106 1-122 18-124 (125)
65 cd04045 C2C_Tricalbin-like C2 99.7 3.3E-17 7.1E-22 124.0 12.2 103 1-126 3-105 (120)
66 cd08690 C2_Freud-1 C2 domain f 99.7 7.3E-17 1.6E-21 127.9 14.5 131 1-143 4-139 (155)
67 cd04052 C2B_Tricalbin-like C2 99.7 4.3E-17 9.3E-22 121.4 11.3 103 19-143 9-111 (111)
68 cd04009 C2B_Munc13-like C2 dom 99.7 4.4E-17 9.5E-22 125.0 10.5 101 1-109 18-118 (133)
69 cd08406 C2B_Synaptotagmin-12 C 99.7 3.5E-17 7.6E-22 126.9 9.9 95 1-107 17-111 (136)
70 cd08390 C2A_Synaptotagmin-15-1 99.7 1.1E-16 2.4E-21 120.2 12.3 106 1-122 16-121 (123)
71 cd08407 C2B_Synaptotagmin-13 C 99.7 5.2E-17 1.1E-21 126.4 10.3 96 1-106 17-112 (138)
72 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.4E-17 5.2E-22 125.9 8.1 108 1-125 15-122 (133)
73 cd08686 C2_ABR C2 domain in th 99.7 3.9E-16 8.6E-21 118.4 14.3 110 1-140 1-118 (118)
74 cd08404 C2B_Synaptotagmin-4 C2 99.7 3E-17 6.6E-22 126.2 7.4 114 1-132 17-130 (136)
75 cd04038 C2_ArfGAP C2 domain pr 99.7 1.3E-16 2.8E-21 125.0 10.7 88 1-109 4-91 (145)
76 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.5E-16 3.2E-21 122.2 9.8 95 1-107 17-111 (136)
77 cd08675 C2B_RasGAP C2 domain s 99.7 4.5E-16 9.9E-21 120.5 12.3 111 1-126 1-122 (137)
78 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.3E-16 4.9E-21 125.6 10.7 108 1-123 29-137 (162)
79 cd08408 C2B_Synaptotagmin-14_1 99.7 2.2E-16 4.7E-21 122.5 10.3 97 1-108 17-113 (138)
80 cd04026 C2_PKC_alpha_gamma C2 99.7 3.8E-16 8.1E-21 119.0 11.3 109 1-126 15-123 (131)
81 cd08410 C2B_Synaptotagmin-17 C 99.7 2.8E-16 6E-21 121.1 10.3 111 1-127 16-126 (135)
82 cd04032 C2_Perforin C2 domain 99.7 2.6E-16 5.7E-21 120.8 10.0 89 1-108 30-118 (127)
83 cd08402 C2B_Synaptotagmin-1 C2 99.7 3.1E-16 6.6E-21 120.4 10.1 95 1-107 17-111 (136)
84 cd08692 C2B_Tac2-N C2 domain s 99.7 4.1E-16 8.8E-21 121.0 10.6 95 1-107 16-110 (135)
85 cd08403 C2B_Synaptotagmin-3-5- 99.7 3.3E-16 7.2E-21 119.9 9.9 94 1-106 16-109 (134)
86 cd04035 C2A_Rabphilin_Doc2 C2 99.7 8.2E-16 1.8E-20 115.9 11.8 97 1-110 17-114 (123)
87 cd08409 C2B_Synaptotagmin-15 C 99.7 4.5E-16 9.8E-21 120.3 9.9 94 1-107 17-110 (137)
88 cd04037 C2E_Ferlin C2 domain f 99.7 1.1E-15 2.3E-20 116.2 11.2 92 1-109 2-93 (124)
89 PLN02270 phospholipase D alpha 99.7 1.6E-15 3.4E-20 144.5 14.7 129 1-148 10-155 (808)
90 cd08676 C2A_Munc13-like C2 dom 99.6 1.3E-15 2.8E-20 120.4 10.9 105 1-122 30-153 (153)
91 KOG1028 Ca2+-dependent phospho 99.6 2.3E-15 5E-20 136.1 13.3 127 1-144 169-297 (421)
92 cd00276 C2B_Synaptotagmin C2 d 99.6 2E-15 4.3E-20 114.6 10.1 110 1-127 16-125 (134)
93 cd04048 C2A_Copine C2 domain f 99.6 3.6E-15 7.8E-20 112.2 10.9 105 4-123 5-113 (120)
94 PLN02223 phosphoinositide phos 99.6 5.7E-15 1.2E-19 135.8 13.2 122 1-140 411-534 (537)
95 KOG0169 Phosphoinositide-speci 99.6 3.5E-15 7.6E-20 140.2 11.6 126 1-142 618-745 (746)
96 PF00168 C2: C2 domain; Inter 99.6 8.9E-15 1.9E-19 101.2 9.6 85 1-101 1-85 (85)
97 PLN02952 phosphoinositide phos 99.6 1.3E-14 2.9E-19 135.4 13.3 123 1-141 472-597 (599)
98 cd04047 C2B_Copine C2 domain s 99.6 4.4E-14 9.5E-19 104.3 10.4 96 3-109 4-100 (110)
99 PLN03200 cellulose synthase-in 99.6 1.4E-14 3E-19 148.6 10.1 117 1-142 1982-2101(2102)
100 PLN02230 phosphoinositide phos 99.6 4.3E-14 9.3E-19 131.9 12.6 123 1-140 471-597 (598)
101 PLN02222 phosphoinositide phos 99.5 1.2E-13 2.6E-18 128.7 13.9 121 1-139 454-579 (581)
102 PLN02228 Phosphoinositide phos 99.5 2.2E-13 4.8E-18 126.6 13.3 126 1-143 433-563 (567)
103 KOG0696 Serine/threonine prote 99.5 9.1E-15 2E-19 130.9 3.2 107 1-124 182-288 (683)
104 COG5038 Ca2+-dependent lipid-b 99.4 4.4E-13 9.5E-18 130.5 11.1 124 1-145 438-561 (1227)
105 smart00239 C2 Protein kinase C 99.4 7.5E-12 1.6E-16 87.9 11.1 93 1-109 2-94 (101)
106 cd00030 C2 C2 domain. The C2 d 99.4 9.3E-12 2E-16 86.6 10.9 90 1-108 1-90 (102)
107 PLN02352 phospholipase D epsil 99.4 5.3E-12 1.2E-16 120.2 12.2 121 1-147 12-136 (758)
108 cd08689 C2_fungal_Pkc1p C2 dom 99.4 3E-12 6.4E-17 95.2 7.5 88 1-109 1-88 (109)
109 KOG2059 Ras GTPase-activating 99.3 6.2E-12 1.4E-16 117.5 10.1 140 1-162 7-149 (800)
110 cd08374 C2F_Ferlin C2 domain s 99.3 3.5E-11 7.5E-16 93.2 10.0 100 1-109 2-123 (133)
111 KOG1011 Neurotransmitter relea 99.3 5.1E-12 1.1E-16 117.6 6.1 118 1-143 297-428 (1283)
112 KOG1264 Phospholipase C [Lipid 99.2 5.7E-11 1.2E-15 112.7 10.5 123 1-143 1067-1191(1267)
113 KOG1028 Ca2+-dependent phospho 99.2 5.7E-11 1.2E-15 107.6 9.8 94 1-106 300-393 (421)
114 COG5038 Ca2+-dependent lipid-b 99.1 3.3E-10 7.2E-15 110.8 9.0 122 1-143 1042-1163(1227)
115 KOG1011 Neurotransmitter relea 98.9 5.8E-09 1.3E-13 97.6 8.3 110 2-124 1128-1237(1283)
116 KOG1031 Predicted Ca2+-depende 98.9 8E-09 1.7E-13 95.7 8.4 123 1-141 5-136 (1169)
117 KOG1328 Synaptic vesicle prote 98.6 3.4E-08 7.5E-13 93.3 4.4 99 1-107 949-1047(1103)
118 KOG1265 Phospholipase C [Lipid 98.5 2.4E-07 5.1E-12 89.1 8.2 105 1-132 705-812 (1189)
119 KOG1328 Synaptic vesicle prote 98.4 1.1E-07 2.4E-12 90.0 2.0 131 3-146 118-306 (1103)
120 KOG2059 Ras GTPase-activating 98.2 3.2E-06 7E-11 79.9 7.6 125 5-143 137-278 (800)
121 KOG0905 Phosphoinositide 3-kin 98.0 6.9E-06 1.5E-10 81.3 4.3 108 1-123 1526-1634(1639)
122 KOG1013 Synaptic vesicle prote 97.8 3.1E-06 6.6E-11 74.1 -1.0 129 1-142 95-230 (362)
123 cd08683 C2_C2cd3 C2 domain fou 97.7 6.6E-05 1.4E-09 58.0 4.8 101 1-110 1-133 (143)
124 cd08398 C2_PI3K_class_I_alpha 97.6 0.00044 9.6E-09 55.0 8.9 92 1-106 10-105 (158)
125 PLN02964 phosphatidylserine de 97.5 0.00012 2.6E-09 69.8 5.4 100 2-127 57-156 (644)
126 cd08693 C2_PI3K_class_I_beta_d 97.5 0.00053 1.1E-08 55.3 8.4 77 1-89 10-86 (173)
127 KOG1326 Membrane-associated pr 97.5 6.5E-05 1.4E-09 73.5 2.7 89 2-107 616-704 (1105)
128 cd08380 C2_PI3K_like C2 domain 97.4 0.0011 2.5E-08 51.9 8.3 96 1-107 10-107 (156)
129 KOG1013 Synaptic vesicle prote 97.4 0.00033 7.1E-09 61.5 5.4 93 1-105 235-327 (362)
130 KOG3837 Uncharacterized conser 97.2 0.00026 5.7E-09 63.9 3.7 129 1-143 369-505 (523)
131 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00083 1.8E-08 48.9 5.0 93 2-109 2-94 (103)
132 cd08397 C2_PI3K_class_III C2 d 96.9 0.0034 7.4E-08 49.9 7.1 79 22-107 29-107 (159)
133 cd04012 C2A_PI3K_class_II C2 d 96.9 0.0041 8.9E-08 49.8 7.3 98 1-107 10-119 (171)
134 cd08399 C2_PI3K_class_I_gamma 96.9 0.021 4.6E-07 46.3 11.2 127 1-142 12-139 (178)
135 PF00792 PI3K_C2: Phosphoinosi 96.8 0.0082 1.8E-07 46.4 7.9 78 24-107 3-85 (142)
136 PF10358 NT-C2: N-terminal C2 96.7 0.14 2.9E-06 39.0 14.2 128 1-147 9-141 (143)
137 KOG2060 Rab3 effector RIM1 and 96.6 0.002 4.3E-08 57.5 3.9 111 1-127 271-382 (405)
138 KOG1326 Membrane-associated pr 96.5 0.00083 1.8E-08 66.0 0.4 115 3-138 210-329 (1105)
139 KOG1327 Copine [Signal transdu 96.3 0.0083 1.8E-07 55.9 5.8 93 6-108 143-235 (529)
140 PF11618 DUF3250: Protein of u 96.0 0.059 1.3E-06 40.2 8.2 94 44-142 11-106 (107)
141 cd08695 C2_Dock-B C2 domains f 96.0 0.034 7.4E-07 45.6 7.4 60 43-106 52-113 (189)
142 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.12 2.6E-06 41.2 9.3 100 43-144 44-153 (156)
143 PF14429 DOCK-C2: C2 domain in 95.7 0.057 1.2E-06 43.5 7.7 59 44-106 59-120 (184)
144 cd08679 C2_DOCK180_related C2 95.3 0.089 1.9E-06 42.2 7.4 58 45-106 53-115 (178)
145 cd08694 C2_Dock-A C2 domains f 95.2 0.11 2.3E-06 42.9 7.6 59 43-105 52-114 (196)
146 PF12416 DUF3668: Cep120 prote 94.9 0.39 8.5E-06 42.8 11.0 126 2-145 3-136 (340)
147 smart00142 PI3K_C2 Phosphoinos 92.8 0.75 1.6E-05 33.4 7.4 60 23-89 32-91 (100)
148 cd08696 C2_Dock-C C2 domains f 92.7 0.6 1.3E-05 37.9 7.4 59 44-106 54-118 (179)
149 KOG1329 Phospholipase D1 [Lipi 91.8 0.35 7.5E-06 47.7 5.8 107 23-147 138-246 (887)
150 cd08697 C2_Dock-D C2 domains f 91.2 1.2 2.5E-05 36.5 7.5 59 44-106 56-123 (185)
151 cd08687 C2_PKN-like C2 domain 89.9 1.2 2.5E-05 32.7 5.7 72 44-140 21-92 (98)
152 KOG1452 Predicted Rho GTPase-a 89.2 0.82 1.8E-05 40.6 5.3 113 2-143 54-169 (442)
153 PF14924 DUF4497: Protein of u 88.0 2.1 4.5E-05 31.8 6.1 62 80-142 30-105 (112)
154 PF15625 CC2D2AN-C2: CC2D2A N- 83.9 8.9 0.00019 30.5 8.3 71 22-108 36-107 (168)
155 PF14186 Aida_C2: Cytoskeletal 82.8 6 0.00013 31.2 6.7 97 1-108 15-113 (147)
156 PF06219 DUF1005: Protein of u 72.5 28 0.00061 32.1 8.7 96 79-177 95-208 (460)
157 PF07162 B9-C2: Ciliary basal 65.5 66 0.0014 25.4 12.1 74 45-125 40-117 (168)
158 KOG3543 Ca2+-dependent activat 59.5 73 0.0016 31.3 9.0 114 1-142 343-460 (1218)
159 KOG2419 Phosphatidylserine dec 43.3 3.2 6.9E-05 40.2 -2.6 53 4-70 285-340 (975)
160 KOG0904 Phosphatidylinositol 3 42.2 89 0.0019 31.7 6.9 33 54-88 389-421 (1076)
161 KOG1327 Copine [Signal transdu 41.4 44 0.00095 31.7 4.5 59 45-109 42-104 (529)
162 cd05137 RasGAP_CLA2_BUD2 CLA2/ 39.7 35 0.00075 31.1 3.5 45 96-143 1-46 (395)
163 KOG0694 Serine/threonine prote 36.0 28 0.00061 33.9 2.4 51 22-89 27-77 (694)
164 PF08150 FerB: FerB (NUC096) d 35.8 79 0.0017 22.2 4.1 50 92-141 14-74 (76)
165 PF08120 Toxin_32: Tamulustoxi 34.8 26 0.00056 20.3 1.2 19 165-187 3-21 (35)
166 PF08151 FerI: FerI (NUC094) d 23.5 1.7E+02 0.0037 20.1 4.0 40 104-143 3-44 (72)
167 KOG4027 Uncharacterized conser 23.4 2.2E+02 0.0049 23.0 5.2 49 57-107 63-111 (187)
168 PTZ00447 apical membrane antig 22.0 6.2E+02 0.013 23.2 9.6 59 79-142 115-174 (508)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.94 E-value=1.5e-25 Score=170.74 Aligned_cols=117 Identities=21% Similarity=0.456 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ + +++||||++.+ + .+++||+++.+++.||+|||+|+|.+.+ . ...
T Consensus 4 L~v~v~~Ak~l~~~~---~-g~sDPYv~i~l------g----~~~~kT~v~~~~~~nP~WNe~F~f~v~~-~-----~~~ 63 (121)
T cd04016 4 LSITVVQAKLVKNYG---L-TRMDPYCRIRV------G----HAVYETPTAYNGAKNPRWNKTIQCTLPE-G-----VDS 63 (121)
T ss_pred EEEEEEEccCCCcCC---C-CCCCceEEEEE------C----CEEEEeEEccCCCCCCccCeEEEEEecC-C-----CcE
Confidence 789999999998875 4 48999999987 3 3688999998778999999999999976 2 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc-ccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND-IGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~-l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++.+++|++||.+.|+|.+ +... .....||+|....|.+..|.|||+++|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNG---ETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCC---CCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999999999999999999999974 5432 224569999876676678999999975
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.91 E-value=7.4e-24 Score=160.24 Aligned_cols=122 Identities=33% Similarity=0.602 Sum_probs=99.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+ ++ .++++|+++.+++.||.|||+|.|.+.+..+ ......
T Consensus 2 L~V~V~sA~~L~~~~--~~-~~~dpYv~v~~------~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~-~~~~~~ 68 (125)
T cd04051 2 LEITIISAEDLKNVN--LF-GKMKVYAVVWI------DP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLL-QQGRLA 68 (125)
T ss_pred EEEEEEEcccCCCCC--cc-cCCceEEEEEE------CC---CcccccccccCCCCCCCCCCEEEEEcChHhc-ccCccE
Confidence 789999999999987 34 48999999987 22 2578999987778999999999999977321 111258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC--CcceeEEEEEEeCCCCcccEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG--GSVRNLSYRLRARDGSRGHGVVNL 136 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~--~~~~~~~y~L~~~~G~k~~G~l~l 136 (192)
|.|+|||++.+++|++||++.|+|.++..... ...+..||+|.+++| +++|+|||
T Consensus 69 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred EEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 99999999987789999999999999975432 135678999999887 99999986
No 3
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=1.6e-22 Score=153.72 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=98.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||.|.+ + .+++||+++. ++.||.|||+|.|.+.+..... ...
T Consensus 2 L~V~vi~A~~L~~~d--~-~g~~dpyv~v~~------~----~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~--~~~ 65 (127)
T cd04022 2 LVVEVVDAQDLMPKD--G-QGSSSAYVELDF------D----GQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLS--NLV 65 (127)
T ss_pred eEEEEEEeeCCCCCC--C-CCCcCcEEEEEE------C----CEEecceeEc-CCCCCccceEEEEEccCHHHcc--CCe
Confidence 789999999999887 2 357999999976 2 2578999986 5899999999999987522111 247
Q ss_pred EEEEEEEccCCC-CCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLIS-GQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~-~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+. +|++||++.|+|+++.. .+.....||+|.++. .++.+|+|+|.++|++
T Consensus 66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEEEeeCCCCcCCCCeeeEEEEcHHHcCC--CCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 999999998876 79999999999999972 234456799998753 2368999999999864
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.89 E-value=1.9e-22 Score=153.19 Aligned_cols=124 Identities=23% Similarity=0.383 Sum_probs=95.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
++|+|++|++|+..+ . .+.+||||+|.+ + .+++||+++++ +.||+|||+|.|.+......+.....
T Consensus 1 ~~V~V~~A~~L~~~d--~-~g~~dpYv~v~l------~----~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCKG--K-SGTNDAYVIIQL------G----KEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCCC--C-CcCCCceEEEEE------C----CeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCE
Confidence 689999999999887 3 358999999976 2 25789999975 69999999999998762110011258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC--CcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~ 139 (192)
|.|+|||++.+++|++||++.|+|+++.... +.....||+|....+ .+..|+|+|.++
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999998888999999999999996322 233457999985433 257899999873
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=2.3e-22 Score=158.30 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=102.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ .+ +.+||||++.+ + .++.+|+++.+++.||+|||+|.|.+.+ .. ...
T Consensus 2 L~V~Vi~A~~L~~~d--~~-g~sDPYV~v~l------~----~~~~kTk~~~~~t~nP~WNE~F~f~v~~-~~----~~~ 63 (150)
T cd04019 2 LRVTVIEAQDLVPSD--KN-RVPEVFVKAQL------G----NQVLRTRPSQTRNGNPSWNEELMFVAAE-PF----EDH 63 (150)
T ss_pred EEEEEEEeECCCCCC--CC-CCCCeEEEEEE------C----CEEeeeEeccCCCCCCcccCcEEEEecC-cc----CCe
Confidence 789999999999988 34 58999999986 3 2688999987667999999999999876 21 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC-CCCcceeEEEEEEeCCC-------CcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP-PGGSVRNLSYRLRARDG-------SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~-~~~~~~~~~y~L~~~~G-------~k~~G~l~l~v~f~~~ 143 (192)
|.|+|+|++.+++|++||++.|||.++... ..+.....||+|.+..| .+.+|.|+|.+.|.+.
T Consensus 64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998877899999999999999643 22344567999997653 3678999999999974
No 6
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=1.3e-21 Score=147.40 Aligned_cols=120 Identities=17% Similarity=0.385 Sum_probs=98.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ...++|++.. ++.||.|||+|.|.+.+. ...
T Consensus 2 L~v~v~~a~~L~~~d--~~-g~~Dpyv~v~~------~~---~~~~kT~~~~-~t~nP~Wne~f~f~v~~~------~~~ 62 (121)
T cd04042 2 LDIHLKEGRNLAARD--RG-GTSDPYVKFKY------GG---KTVYKSKTIY-KNLNPVWDEKFTLPIEDV------TQP 62 (121)
T ss_pred eEEEEEEeeCCCCcC--CC-CCCCCeEEEEE------CC---EEEEEeeecc-CCCCCccceeEEEEecCC------CCe
Confidence 689999999999987 34 58999999975 32 3578999886 589999999999998651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|||++.+++|++||.+.++|.++... .....||+|.++.+.+..|+|+|.+.|.|
T Consensus 63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEeCCCCCCCcceEEEEEEHHHcCCC---CCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999988999999999999999743 22456899987655478999999999875
No 7
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.88 E-value=2e-21 Score=148.18 Aligned_cols=128 Identities=20% Similarity=0.440 Sum_probs=100.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+.. .++ ...+.+|++.+ ++.||.|||+|.|.+... . ..
T Consensus 2 L~v~Vi~a~~L~~~d--~~-~~~Dpyv~v~~~~~~--~~~-~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~----~--~~ 68 (133)
T cd04033 2 LRVKVLAGIDLAKKD--IF-GASDPYVKISLYDPD--GNG-EIDSVQTKTIK-KTLNPKWNEEFFFRVNPR----E--HR 68 (133)
T ss_pred EEEEEEEeECCCccc--CC-CCcCcEEEEEEECCC--CCC-cccceeeeEEc-CCCCCcEeeEEEEEEcCC----C--CE
Confidence 689999999999887 33 589999999875421 111 12367899886 589999999999998662 1 37
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCC---CcceeEEEEEEeCC-CCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG---GSVRNLSYRLRARD-GSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~---~~~~~~~y~L~~~~-G~k~~G~l~l~v~f~ 141 (192)
|.|+|+|++.+++|++||.+.+++.++..... ......||+|..+. .++.+|+|+|++.|.
T Consensus 69 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 69 LLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99999999998889999999999999965322 23566799998653 237899999999984
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.6e-21 Score=149.58 Aligned_cols=113 Identities=20% Similarity=0.336 Sum_probs=91.4
Q ss_pred CEEEEEEeeC---CCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQG---LKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~---L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|+|+|++|++ |+..+ . .|.+||||++.+ + .++.||+++. ++.||+|||+|.|.+.+.
T Consensus 2 L~v~v~~A~~~~~l~~~d--~-~g~sDPYv~i~~------g----~~~~rTk~~~-~~~nP~WnE~f~f~v~~~------ 61 (126)
T cd08379 2 LEVGILGAQGLDVLRAKD--G-RGSTDAYCVAKY------G----PKWVRTRTVE-DSSNPRWNEQYTWPVYDP------ 61 (126)
T ss_pred eEEEEEEeECCccccccc--c-CCCCCeeEEEEE------C----CEEeEcCccc-CCCCCcceeEEEEEecCC------
Confidence 7999999999 77776 3 368999999986 3 3688999997 489999999999999762
Q ss_pred eeEEEEEEEEccCCC------CCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEE
Q 029535 78 YACIYLQLYTKTLIS------GQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNL 136 (192)
Q Consensus 78 ~~~L~veV~d~~~~~------~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l 136 (192)
...|.|+|||++.++ +|++||++.|+|+++... .....||+|...+ |.+..|.|+.
T Consensus 62 ~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 62 CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCCccCCcEEEe
Confidence 147999999998763 899999999999998642 3345799999754 3467888875
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.87 E-value=1.1e-21 Score=146.76 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=93.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||++.+ ++ ++.+|+++.+++.||.|||.|.|.+... . ...
T Consensus 3 L~V~v~~A~~L~~~~--~~-~~~dpyv~v~~------~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~--~~~ 64 (118)
T cd08681 3 LVVVVLKARNLPNKR--KL-DKQDPYCVLRI------GG----VTKKTKTDFRGGQHPEWDEELRFEITED---K--KPI 64 (118)
T ss_pred EEEEEEEccCCCCCC--cC-CCCCceEEEEE------CC----CccccccccCCCCCCccCceEEEEecCC---C--CCE
Confidence 689999999999987 34 58999999976 32 4678998766689999999999999762 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++..+ |++||++.+++.++..... ...||+|.. +| +..|+|+|.+.|
T Consensus 65 l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~---~~~w~~L~~-~~-~~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRK-PDLIGDTEVDLSPALKEGE---FDDWYELTL-KG-RYAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCC-CcceEEEEEecHHHhhcCC---CCCcEEecc-CC-cEeeEEEEEEEC
Confidence 999999998764 8999999999999864321 345899874 34 789999999986
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.87 E-value=2.1e-21 Score=147.76 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=87.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . |.+||||.|.+++.. .++ +.++++|+++. ++.||+|||+|.|.+..+... ....
T Consensus 2 L~V~Vi~A~~L~~~d---~-g~~DPYVkV~l~g~~--~~~-k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~~--~~~~ 71 (120)
T cd08395 2 VTVKVVAANDLKWQT---T-GMFRPFVEVNLIGPH--LSD-KKRKFATKSKN-NNWSPKYNETFQFILGNEDDP--ESYE 71 (120)
T ss_pred EEEEEEECcCCCccc---C-CCCCCEEEEEEecCC--Ccc-cccEeeeEEec-CCCCCccCcEEEEEeeCcCCC--ceeE
Confidence 789999999999876 2 589999999986521 122 24678999884 789999999999999753212 2368
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++.+++|++||.+.+||+++.... ....|++|..
T Consensus 72 L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 72 LHICVKDYCFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred EEEEEEEecccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 9999999987778999999999999997433 2456899854
No 11
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=2.1e-21 Score=147.21 Aligned_cols=117 Identities=20% Similarity=0.316 Sum_probs=96.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.. .+||||.+.+ + .++.||++++ ++.||.|||+|.|.+.+. + ...
T Consensus 2 L~V~Vi~a~~L~~~-------~~Dpyv~v~l------~----~~~~kT~v~~-~t~nP~Wne~F~f~~~~~---~--~~~ 58 (121)
T cd08378 2 LYVRVVKARGLPAN-------SNDPVVEVKL------G----NYKGSTKAIE-RTSNPEWNQVFAFSKDRL---Q--GST 58 (121)
T ss_pred EEEEEEEecCCCcc-------cCCCEEEEEE------C----CccccccccC-CCCCCccceEEEEEcCCC---c--CCE
Confidence 78999999999864 4799999986 2 2578999986 479999999999998651 1 148
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC--CCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP--PGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~--~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ ++++||.+.++|+++... +++.....||+|....+.+..|+|+|+++|+
T Consensus 59 L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 59 LEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999876 889999999999998542 2334456799998866568899999999996
No 12
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.86 E-value=3.7e-21 Score=144.36 Aligned_cols=121 Identities=26% Similarity=0.464 Sum_probs=95.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+++.+||||++.+ +++ ....+|+++. ++.||.|||.|.|.+.. . ...
T Consensus 4 l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~------~~~--~~~~kT~~~~-~~~~P~Wne~~~~~v~~-~-----~~~ 66 (124)
T cd04044 4 LAVTIKSARGLKGSD--IIGGTVDPYVTFSI------SNR--RELARTKVKK-DTSNPVWNETKYILVNS-L-----TEP 66 (124)
T ss_pred EEEEEEcccCCCccc--ccCCCCCCeEEEEE------CCC--CcceEeeeec-CCCCCcceEEEEEEeCC-C-----CCE
Confidence 689999999999765 34567899999986 221 2578999986 58999999999999874 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|+|++.+++|++||.+.++|.++..... ....++.+. .+| |++|+|+++++|.|
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-RNG-KPVGELNYDLRFFP 124 (124)
T ss_pred EEEEEEecCCCCCCceeEEEEEEHHHhccCcc--ccCcchhhh-cCC-ccceEEEEEEEeCC
Confidence 99999999988889999999999999975432 222345544 445 88999999999976
No 13
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=1.2e-20 Score=143.84 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=93.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|+||+..+ .+||||.|.+ ++ .+..||++. ++.||.|||+|.|.+.... ...
T Consensus 6 L~V~Vi~A~~L~~~~------~~DPYv~v~l------~~---~~~~kT~v~--~~~nP~WnE~f~f~~~~~~-----~~~ 63 (126)
T cd08400 6 LQLNVLEAHKLPVKH------VPHPYCVISL------NE---VKVARTKVR--EGPNPVWSEEFVFDDLPPD-----VNS 63 (126)
T ss_pred EEEEEEEeeCCCCCC------CCCeeEEEEE------CC---EeEEEeecC--CCCCCccCCEEEEecCCCC-----cCE
Confidence 689999999998643 6799999987 32 346789974 4799999999999865411 136
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l~v~f~~ 142 (192)
|.|.|+|++.+++|++||++.|||.++... .....||+|...+ +.+..|.|+|+++|.+
T Consensus 64 l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 64 FTISLSNKAKRSKDSEIAEVTVQLSKLQNG---QETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEECCCCCCCCeEEEEEEEHhHccCC---CcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 889999999888999999999999998642 2345699998653 2367899999999976
No 14
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.85 E-value=2.8e-20 Score=139.01 Aligned_cols=115 Identities=19% Similarity=0.339 Sum_probs=94.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.+. ...
T Consensus 3 l~v~v~~a~~L~~~~--~~-~~~dPyv~v~~------~~----~~~~T~~~~-~t~nP~W~e~f~~~~~~~------~~~ 62 (119)
T cd08377 3 LQVKVIRASGLAAAD--IG-GKSDPFCVLEL------VN----ARLQTHTIY-KTLNPEWNKIFTFPIKDI------HDV 62 (119)
T ss_pred EEEEEEeeeCCCCCC--CC-CCCCcEEEEEE------CC----Eeeecceec-CCcCCccCcEEEEEecCc------CCE
Confidence 689999999999987 33 57999999976 22 467999987 489999999999998651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f 140 (192)
|.|+|+|++.++++++||.+.++|.++.... ..||+|..+.+ ++.+|+|.|++.|
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 63 LEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-----RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEEECCCCCCCceeeEEEEEHHHCCCCC-----ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999988788999999999999986332 34899987543 3689999999987
No 15
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.85 E-value=6.3e-20 Score=139.39 Aligned_cols=122 Identities=17% Similarity=0.378 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+. . + +.+||||.+.+ +. ..++.+|+++. ++.||+|||+|.|.+... ...
T Consensus 1 l~v~v~~A~~L~~-~---~-g~~dpyv~v~~------~~--~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~------~~~ 60 (126)
T cd08678 1 LLVKNIKANGLSE-A---A-GSSNPYCVLEM------DE--PPQKYQSSTQK-NTSNPFWDEHFLFELSPN------SKE 60 (126)
T ss_pred CEEEEEEecCCCC-C---C-CCcCCEEEEEE------CC--CCcEEEeEEEe-cCCCCccCceEEEEeCCC------CCE
Confidence 7899999999987 3 2 58999999976 21 12578999997 479999999999999651 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC--CCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD--GSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~--G~k~~G~l~l~v~f~~~~~ 145 (192)
|.|+|||++.+++|++||.+.++|.++...... ..||+|.... +.+..|+|++.+.|.+.+.
T Consensus 61 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 61 LLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 999999999888899999999999999754332 3578887542 2368999999999988653
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.85 E-value=3.4e-20 Score=146.92 Aligned_cols=121 Identities=21% Similarity=0.378 Sum_probs=94.7
Q ss_pred CEEEEEEeeCCCCCCC------C---------------------CcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecC
Q 029535 1 MEITILSAQGLKNTSF------T---------------------LFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDH 53 (192)
Q Consensus 1 LeVtVisAk~L~~~~~------~---------------------~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~ 53 (192)
|+|+|++|++|+++|. . ...+.+||||+|.+ ++ .+..||+++++
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l------~~---~~~~rT~v~~~ 79 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL------AG---ARVARTRVIEN 79 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE------CC---eEeeEEEEeCC
Confidence 7899999999999871 0 01246899999986 32 24579999874
Q ss_pred CCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC--ccc
Q 029535 54 GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS--RGH 131 (192)
Q Consensus 54 ~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~--k~~ 131 (192)
+.||.|||+|.|.+.+. ...|.|+|+|++.+ ++++||++.|||+++... .....||+|.+..|. +..
T Consensus 80 -~~nP~WnE~F~~~~~~~------~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~~~~~~~~~ 148 (158)
T cd04015 80 -SENPVWNESFHIYCAHY------ASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDSNGKPPKPG 148 (158)
T ss_pred -CCCCccceEEEEEccCC------CCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCC---CCcceEEECcCCCCCCCCCC
Confidence 69999999999998762 14799999999886 568999999999999742 234569999876552 356
Q ss_pred EEEEEEEEEe
Q 029535 132 GVVNLAIKLE 141 (192)
Q Consensus 132 G~l~l~v~f~ 141 (192)
|.|+++++|.
T Consensus 149 ~~l~v~~~f~ 158 (158)
T cd04015 149 AKIRVSLQFT 158 (158)
T ss_pred CEEEEEEEEC
Confidence 7999999984
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.85 E-value=5.5e-20 Score=139.48 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=95.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+. ..+.+||||.|.+ ++ ..+++|++++ ++.||.|||.|.|.+.+. ...
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l------~~---~~~~kT~v~~-kt~~P~WnE~F~f~v~~~------~~~ 63 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNL------DQ---EEVFRTKTVE-KSLCPFFGEDFYFEIPRT------FRH 63 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEE------CC---ccEEEeeEEE-CCCCCccCCeEEEEcCCC------CCE
Confidence 6899999999998752 2357899999976 22 2468999986 489999999999999862 148
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~f 140 (192)
|.|+|+|++.+++|++||.+.++|+++... .....||+|.... .++.+|.|||+++|
T Consensus 64 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 64 LSFYIYDRDVLRRDSVIGKVAIKKEDLHKY---YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHccCC---CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999988999999999999999642 2345799997532 13679999999875
No 18
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.85 E-value=3.6e-20 Score=139.15 Aligned_cols=117 Identities=16% Similarity=0.298 Sum_probs=92.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+.+ . +.++.||+++++ +.||.|||+|.|.+... . ...
T Consensus 2 L~V~vi~a~~L~~~~--~~-~~~Dpyv~v~~~~------~-~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~---~--~~~ 65 (119)
T cd04036 2 LTVRVLRATNITKGD--LL-STPDCYVELWLPT------A-SDEKKRTKTIKN-SINPVWNETFEFRIQSQ---V--KNV 65 (119)
T ss_pred eEEEEEEeeCCCccC--CC-CCCCcEEEEEEcC------C-CCccCccceecC-CCCCccceEEEEEeCcc---c--CCE
Confidence 689999999999987 33 5899999998622 1 135789999974 79999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+ +|++||++.++|+++... .....||+|.. +.+|.|++.+.+.
T Consensus 66 l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g---~~~~~~~~L~~----~~~g~l~~~~~~~ 118 (119)
T cd04036 66 LELTVMDEDYV-MDDHLGTVLFDVSKLKLG---EKVRVTFSLNP----QGKEELEVEFLLE 118 (119)
T ss_pred EEEEEEECCCC-CCcccEEEEEEHHHCCCC---CcEEEEEECCC----CCCceEEEEEEee
Confidence 99999999988 899999999999998642 33567899852 3478888888763
No 19
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=6.5e-20 Score=138.46 Aligned_cols=123 Identities=16% Similarity=0.261 Sum_probs=96.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+.... +.+||||.|.+ + .++.+|++++ ++.||.|||+|.|.+.+. .. ..
T Consensus 3 l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~------~----~~~~kT~~~~-~t~~P~Wne~f~~~~~~~---~~--~~ 65 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGK-GKSDPYAILSV------G----AQRFKTQTIP-NTLNPKWNYWCEFPIFSA---QN--QL 65 (128)
T ss_pred EEEEEEEeeCCCcccCCCC-CCcCCeEEEEE------C----CEEEecceec-CCcCCccCCcEEEEecCC---CC--CE
Confidence 6899999999998872003 58999998875 2 2578999987 489999999999999761 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC---CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG---SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G---~k~~G~l~l~v~f 140 (192)
|.|+|||++.++++++||.+.|+|.++...........||.|...+. .+..|+|+|.+.|
T Consensus 66 l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 66 LKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999988789999999999999974322233567999876532 2479999999875
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=9.8e-20 Score=140.95 Aligned_cols=117 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+ + .++++|++++ ++.||.|||+|.|.+.+. . ...
T Consensus 17 L~V~Vi~A~~L~~~d--~~-g~~DPYv~v~~------~----~~~~kT~vi~-~t~nP~Wne~f~f~v~~~---~--~~~ 77 (136)
T cd08375 17 LMVVIVEGRDLKPCN--SN-GKSDPYCEVSM------G----SQEHKTKVVS-DTLNPKWNSSMQFFVKDL---E--QDV 77 (136)
T ss_pred EEEEEEEeeCCCCCC--CC-CCcCcEEEEEE------C----CEeeeccccC-CCCCCccCceEEEEecCc---c--CCE
Confidence 689999999999987 34 58999999875 2 2578999987 589999999999998651 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCC--CCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFP--PGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~--~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
|.|+|||++.+++|++||.+.++|.++... .....-..+.++ ++ +.+|+|++.+.|
T Consensus 78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~-~~~g~i~l~~~~ 135 (136)
T cd08375 78 LCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE-VPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc-ccceeEEEEEEe
Confidence 999999999888899999999999999642 112222234444 34 778999999987
No 21
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=2.3e-19 Score=136.25 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=97.1
Q ss_pred EEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEE
Q 029535 5 ILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQ 84 (192)
Q Consensus 5 VisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~ve 84 (192)
|++|++|++ . + +.+||||+|.+ + ..+++|++.+ ++.||.|||+|.|.+.+. ..+ ...|.|+
T Consensus 2 vi~a~~L~~-~---~-g~~Dpyv~v~~------~----~~~~kT~v~~-~~~nP~Wne~f~f~~~~~-~~~--~~~l~~~ 62 (127)
T cd08373 2 VVSLKNLPG-L---K-GKGDRIAKVTF------R----GVKKKTRVLE-NELNPVWNETFEWPLAGS-PDP--DESLEIV 62 (127)
T ss_pred eEEeeCCcc-c---C-CCCCCEEEEEE------C----CEeeecceeC-CCcCCcccceEEEEeCCC-cCC--CCEEEEE
Confidence 799999998 2 3 48999999976 2 2478999987 479999999999999762 112 2589999
Q ss_pred EEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCC
Q 029535 85 LYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPD 146 (192)
Q Consensus 85 V~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~ 146 (192)
|||++.+++|++||.+.++|+++... .....+|+|.+.++...+|+|++.+.|.|+..+
T Consensus 63 v~d~~~~~~d~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 63 VKDYEKVGRNRLIGSATVSLQDLVSE---GLLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEECCCCCCCceEEEEEEEhhHcccC---CceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 99999888899999999999999743 335668999877664468999999999997654
No 22
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.83 E-value=7.8e-20 Score=140.22 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=86.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+.+ + ..+.++.||++++ ++.||+|||+|.|.++...+ ++ ..
T Consensus 17 L~V~V~~a~nL~~~d--~~~g~~dpYVkv~llp----~-~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l-~~--~~ 85 (128)
T cd08392 17 LEITIKACRNLAYGD--EKKKKCHPYVKVCLLP----D-KSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLL-SS--RQ 85 (128)
T ss_pred EEEEEEecCCCCccC--CCCCCCCeEEEEEEEe----C-Ccccceeeccccc-CCCCCccceEEEEEcCHHHh-CC--cE
Confidence 689999999999887 2225899999998743 1 1124588999986 58999999999999877332 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|.|+|.+.++++++||++.|+|+++......+....||+|
T Consensus 86 L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 86 LQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999888999999999999999543323455678986
No 23
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=2.3e-19 Score=133.82 Aligned_cols=114 Identities=18% Similarity=0.353 Sum_probs=92.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +..||||.+.+ + .++.+|++.. ++.||.|||+|.|.+.+. +. ..
T Consensus 2 ~~V~v~~a~~L~~~~--~~-~~~dPyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~--~~ 62 (116)
T cd08376 2 VTIVLVEGKNLPPMD--DN-GLSDPYVKFRL------G----NEKYKSKVCS-KTLNPQWLEQFDLHLFDD---QS--QI 62 (116)
T ss_pred EEEEEEEEECCCCCC--CC-CCCCcEEEEEE------C----CEeEeccccc-CCCCCceeEEEEEEecCC---CC--CE
Confidence 579999999999987 33 58999999976 2 2578999886 589999999999998762 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
|.|+|||++.+++|++||.+.++|+++... .....||+|.. .+|.|++.+.+.
T Consensus 63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~-----~~G~~~~~~~~~ 115 (116)
T cd08376 63 LEIEVWDKDTGKKDEFIGRCEIDLSALPRE---QTHSLELELED-----GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEEECCCCCCCCeEEEEEEeHHHCCCC---CceEEEEEccC-----CCcEEEEEEEec
Confidence 999999999888899999999999998642 34678999852 258899988775
No 24
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.82 E-value=9.8e-20 Score=135.39 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=86.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCee-ceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW-GDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~l~~~~~~ 79 (192)
|+|+|++|++|+.++ ...+..||||++.+ ++ ++.||++++ ++.||.| ||+|.|.+....+ +. .
T Consensus 1 l~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~------~~----~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l-~~--~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMD--RSSDLTDAFVEVKF------GS----TTYKTDVVK-KSLNPVWNSEWFRFEVDDEEL-QD--E 64 (110)
T ss_pred CEEEEEEEECCCccc--cCCCCCCceEEEEE------CC----eeEecceec-CCCCCcccCcEEEEEcChHHc-CC--C
Confidence 789999999999887 23358999999976 22 588999997 5799999 9999999987332 11 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|+|++.++++++||++.++|.++....++.....||+|.+
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 799999999998889999999999999976433333556998864
No 25
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=6.1e-20 Score=139.34 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=76.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+ .+ +.+||||.+.+.. ++ +..+++|+|++ ++.||+|||+|.|.++.+++ + ...
T Consensus 16 L~V~vikA~~L~-~~-----g~sDPYVKv~L~~-----~~-k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l-~--~~t 79 (118)
T cd08677 16 LHVNILEAENIS-VD-----AGCECYISGCVSV-----SE-GQKEAQTALKK-LALHTQWEEELVFPLPEEES-L--DGT 79 (118)
T ss_pred EEEEEEEecCCC-CC-----CCCCeEEEEEEcC-----Cc-CccEEEcceec-CCCCCccccEEEEeCCHHHh-C--CcE
Confidence 689999999999 33 3589999998732 12 24688999987 58999999999999988543 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|+|++.++++++||++.++++++.
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 9999999999999999999999999873
No 26
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.82 E-value=2.4e-19 Score=135.93 Aligned_cols=116 Identities=23% Similarity=0.383 Sum_probs=91.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+ ++ .+.+||++++ ++.||.|||+|.|.+.. . ..
T Consensus 2 l~v~v~~A~~L~~~~--~~-~~~dpyv~v~~------~~---~~~~kT~v~~-~t~nP~Wne~f~~~~~~-~------~~ 61 (123)
T cd08382 2 VRLTVLCADGLAKRD--LF-RLPDPFAVITV------DG---GQTHSTDVAK-KTLDPKWNEHFDLTVGP-S------SI 61 (123)
T ss_pred eEEEEEEecCCCccC--CC-CCCCcEEEEEE------CC---ccceEccEEc-CCCCCcccceEEEEeCC-C------CE
Confidence 689999999999887 44 58999999976 32 3678999986 58999999999999965 1 48
Q ss_pred EEEEEEEccCCCC--CeeeEEEEEeCccccCCCCCcceeEEEEEEeCC---CCcccEEEEEEE
Q 029535 81 IYLQLYTKTLISG--QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD---GSRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~~~--d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~---G~k~~G~l~l~v 138 (192)
|.|+|||++.++. |++||++.+++.++.....+ ...||+|+... ++...|.|.+.+
T Consensus 62 l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 62 ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEEECCCCCCCCCceEeEEEEEHHHccccCCC--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999988754 58999999999999743322 23488887643 236789988875
No 27
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=2.5e-19 Score=135.19 Aligned_cols=116 Identities=18% Similarity=0.295 Sum_probs=92.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ . .+.+||||++.+ + .++.+|+++. ++.||.|||+|.|.+... . ...
T Consensus 2 L~v~vi~a~~L~~~d--~-~~~~DPyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~--~~~ 62 (123)
T cd04025 2 LRCHVLEARDLAPKD--R-NGTSDPFVRVFY------N----GQTLETSVVK-KSCYPRWNEVFEFELMEG---A--DSP 62 (123)
T ss_pred EEEEEEEeeCCCCCC--C-CCCcCceEEEEE------C----CEEEeceeec-CCCCCccCcEEEEEcCCC---C--CCE
Confidence 789999999999887 3 357999999975 2 2568999987 489999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC------CCCcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR------DGSRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~------~G~k~~G~l~l~v~ 139 (192)
|.|+|+|++.++++++||.+.++|.++.... ....||.|... ++ +..|.|+|.++
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~-~~~G~l~~~~~ 123 (123)
T cd04025 63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESG-GNLGSLRLKVR 123 (123)
T ss_pred EEEEEEECCCCCCCcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCcccc-CceEEEEEEeC
Confidence 9999999998888999999999999996432 12458988752 23 67899998763
No 28
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=5.5e-20 Score=146.03 Aligned_cols=89 Identities=18% Similarity=0.359 Sum_probs=79.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|.+|...| |.+++||||.+.+ + .|+.||++.. ++.||+|||.|+|.+.+ + ...
T Consensus 8 L~v~v~~g~~L~~rD---~~~sSDPyVVl~l------g----~q~lkT~~v~-~n~NPeWNe~ltf~v~d-~-----~~~ 67 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRD---FLGSSDPYVVLEL------G----NQKLKTRVVY-KNLNPEWNEELTFTVKD-P-----NTP 67 (168)
T ss_pred EEEEEEeecCeeeec---cccCCCCeEEEEE------C----Ceeeeeeeec-CCCCCcccceEEEEecC-C-----Cce
Confidence 689999999999998 4358999999987 3 4899999885 68999999999999988 2 358
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.++|||++.|+.|++||.|.|||..+.+
T Consensus 68 lkv~VyD~D~fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 68 LKVTVYDKDTFSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred EEEEEEeCCCCCcccccceeeeccHHHHH
Confidence 99999999999999999999999999964
No 29
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.82 E-value=5.8e-19 Score=135.81 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=96.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC-----cccc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN-----AFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~-----~l~~ 75 (192)
|+|+|++|++|+.++ .+ +.+||||+|.+ + .++.+|++++ ++.||.|||.|.|.+..- .+..
T Consensus 3 l~v~V~~a~~L~~~d--~~-g~~dpyv~v~~------~----~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~ 68 (135)
T cd04017 3 LRAYIYQARDLLAAD--KS-GLSDPFARVSF------L----NQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQ 68 (135)
T ss_pred EEEEEEEeecCcCCC--CC-CCCCCEEEEEE------C----CeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhc
Confidence 689999999999887 33 58999999986 2 2578999996 589999999999974320 0101
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEE-eCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQI-PVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~I-pL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
. ...|.|+|+|++.+++|++||++.+ |+..+.....+.....||+|.. .| +.+|+|.+++.+.++
T Consensus 69 ~-~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~-~~~Geil~~~~~~~~ 134 (135)
T cd04017 69 N-PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GG-QSAGELLAAFELIEV 134 (135)
T ss_pred C-CCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CC-CchhheeEEeEEEEe
Confidence 1 1369999999998888999999987 6655543333455678999973 34 689999999998874
No 30
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.81 E-value=6.5e-19 Score=133.15 Aligned_cols=118 Identities=16% Similarity=0.282 Sum_probs=93.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .. +.+||||.+.+ ++ ....||+++.+ +.||.|||.|.|.+.+ . ...
T Consensus 2 l~v~vi~a~~L~~~d--~~-g~~DPYv~v~~------~~---~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~-----~~~ 62 (121)
T cd04054 2 LYIRIVEGKNLPAKD--IT-GSSDPYCIVKV------DN---EVIIRTATVWK-TLNPFWGEEYTVHLPP-G-----FHT 62 (121)
T ss_pred EEEEEEEeeCCcCCC--CC-CCCCceEEEEE------CC---EeeeeeeeEcC-CCCCcccceEEEeeCC-C-----CCE
Confidence 689999999999998 33 58999999976 32 23579999874 8999999999999876 2 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC-CCcccEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD-GSRGHGVVNLAIK 139 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~-G~k~~G~l~l~v~ 139 (192)
|.|+|+|++.++.|++||.+.+++..+...+. ....||+|...+ +++..|+|++.++
T Consensus 63 l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~--~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 63 VSFYVLDEDTLSRDDVIGKVSLTREVISAHPR--GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEECCCCCCCCEEEEEEEcHHHhccCCC--CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999988889999999999988864322 234689987522 2257899999876
No 31
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.81 E-value=3.4e-19 Score=134.61 Aligned_cols=94 Identities=23% Similarity=0.483 Sum_probs=78.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+ + .+..+|++..+++.||.|||+|.|.+..... . ....
T Consensus 3 L~V~V~~A~~L~~~~--~~-~~~dpyv~v~~------~----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~-~~~~ 67 (124)
T cd04049 3 LEVLLISAKGLQDTD--FL-GKIDPYVIIQC------R----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGW-G-GDTK 67 (124)
T ss_pred EEEEEEecCCCCCCC--CC-CCcCceEEEEE------C----CEeeeeeEcCCCCCCCcccceEEEEecCccc-C-CCCE
Confidence 689999999999987 44 58999999976 2 2467899887668999999999999987321 1 1247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|.+.+.+|++||.+.++|.++..
T Consensus 68 l~v~V~d~~~~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 68 LILRIMDKDNFSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred EEEEEEECccCCCCCeEEEEEEEhHHhhh
Confidence 99999999988889999999999999965
No 32
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=2.7e-19 Score=136.42 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=84.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+.+ .+.+..+.||++++ ++.||.|||+|.|.++...+ +. ..
T Consensus 17 L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p-----~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l-~~--~~ 85 (125)
T cd04029 17 LNVHVKECRNLAYGD--EAKKRSNPYVKTYLLP-----DKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQL-ET--RT 85 (125)
T ss_pred EEEEEEEecCCCccC--CCCCCCCcEEEEEEEc-----CCccccceEeeeee-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999876 2235899999998732 11123578999886 58999999999999976332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||++.++++++||.+.|+|.++.... ....||+|
T Consensus 86 L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l 124 (125)
T cd04029 86 LQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS---QHEECLPL 124 (125)
T ss_pred EEEEEEECCCCCCCcEEEEEEEeCCcccccC---CcccEEEC
Confidence 9999999999889999999999999995432 23458887
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=2.2e-19 Score=136.37 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=83.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEc-ccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPT-DCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v-~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .+.+||||+|.+.+ +. .+.++.||++++ ++.||.|||+|.|.+ +... +++ .
T Consensus 15 L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~----~~-~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~-l~~--~ 81 (122)
T cd08381 15 LFVMVMHAKNLPLLD----GSDPDPYVKTYLLP----DP-QKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVED-LQQ--R 81 (122)
T ss_pred EEEEEEEeeCCCCCC----CCCCCCEEEEEEee----CC-ccCCceeCCccC-CCCCCCcccEEEEecCChHH-hCC--C
Confidence 689999999999886 25899999998743 11 124688999987 579999999999987 4422 222 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|||++.++++++||++.|+|+++.... ....||+|
T Consensus 82 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 82 VLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred EEEEEEEeCCCCcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 89999999999888999999999999996432 23458876
No 34
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=2e-19 Score=136.95 Aligned_cols=108 Identities=14% Similarity=0.311 Sum_probs=84.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ...+.+||||++.+++- . ....+.||++++ ++.||+|||+|.|.++...+ +. ..
T Consensus 17 L~V~vi~a~~L~~~d--~~~g~~dpyVkv~l~p~----~-~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l-~~--~~ 85 (125)
T cd08393 17 LHVHVIQCQDLAAAD--PKKQRSDPYVKTYLLPD----K-SNRGKRKTSVKK-KTLNPVFNETLRYKVEREEL-PT--RV 85 (125)
T ss_pred EEEEEEEeCCCCCcC--CCCCCCCcEEEEEEEcC----C-CccccccCccCc-CCCCCccCceEEEECCHHHh-CC--CE
Confidence 689999999999987 22257999999987431 1 113567999997 58999999999999976333 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||++.++++++||++.|+|+++... .....||+|
T Consensus 86 L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L 124 (125)
T cd08393 86 LNLSVWHRDSLGRNSFLGEVEVDLGSWDWS---NTQPTWYPL 124 (125)
T ss_pred EEEEEEeCCCCCCCcEeEEEEEecCccccC---CCCcceEEC
Confidence 999999999988999999999999999532 223458876
No 35
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.81 E-value=2.8e-19 Score=132.91 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=85.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+ . +.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.... .+-....
T Consensus 6 l~V~v~~a~~L~--~-----~~~dpyv~v~~------~~----~~~kT~~~~-~t~nP~wne~f~f~~~~~~-~~l~~~~ 66 (111)
T cd04011 6 VRVRVIEARQLV--G-----GNIDPVVKVEV------GG----QKKYTSVKK-GTNCPFYNEYFFFNFHESP-DELFDKI 66 (111)
T ss_pred EEEEEEEcccCC--C-----CCCCCEEEEEE------CC----EeeeeeEEe-ccCCCccccEEEEecCCCH-HHHhcCe
Confidence 689999999999 2 47899999986 32 578999886 5789999999999975421 1101247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|+|++.+++|++||++.++|+++...+++.....||+|.++
T Consensus 67 l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 67 IKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred EEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeCc
Confidence 999999999888899999999999999876666777889999753
No 36
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.81 E-value=8.7e-19 Score=133.34 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.. ++ ++.+|++++ ++.||.|||.|.|.+... ...
T Consensus 5 ~~V~v~~A~~L~~~d--~~-g~~dPyv~v~~------~~----~~~kT~v~~-~t~nP~Wne~f~f~~~~~------~~~ 64 (126)
T cd04046 5 TQVHVHSAEGLSKQD--SG-GGADPYVIIKC------EG----ESVRSPVQK-DTLSPEFDTQAIFYRKKP------RSP 64 (126)
T ss_pred EEEEEEeCcCCCCCC--CC-CCcCccEEEEE------CC----EEEEeCccC-CCCCCcccceEEEEecCC------CCE
Confidence 689999999999987 44 58999999965 32 578999986 589999999999988652 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe----CCCCcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA----RDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~----~~G~k~~G~l~l~v~f~~~ 143 (192)
|.|+|||++.+ +|++||.+.+++.++... ...+|+|.. .+| +..|.|.+.+.+.+.
T Consensus 65 l~i~V~d~~~~-~d~~lG~~~~~l~~~~~~-----~~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~~ 124 (126)
T cd04046 65 IKIQVWNSNLL-CDEFLGQATLSADPNDSQ-----TLRTLPLRKRGRDAAG-EVPGTISVKVTSSDD 124 (126)
T ss_pred EEEEEEECCCC-CCCceEEEEEecccCCCc-----CceEEEcccCCCCCCC-CCCCEEEEEEEEccc
Confidence 99999999876 689999999999876421 224677743 334 899999999988764
No 37
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.81 E-value=1.4e-18 Score=131.35 Aligned_cols=120 Identities=21% Similarity=0.377 Sum_probs=93.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.. .+. +...+||+++.+ +.||.|||+|.|.+... . ...
T Consensus 3 ~~V~v~~a~~L~~~~--~-~~~~Dpyv~v~~------~~~-~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~---~--~~~ 66 (126)
T cd04043 3 FTIRIVRAENLKADS--S-NGLSDPYVTLVD------TNG-KRRIAKTRTIYD-TLNPRWDEEFELEVPAG---E--PLW 66 (126)
T ss_pred EEEEEEEeECCCCCC--C-CCCCCceEEEEE------CCC-CeeeecccEecC-CCCCcccceEEEEcCCC---C--CCE
Confidence 579999999999987 3 358999999864 221 135689999864 79999999999999772 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+|+|++.++.+++||++.++|.++....++.....|++|. ++|.|++.+.+..
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------~~g~i~l~~~~~~ 122 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------TQGRLLLRVSMEG 122 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------CCCeEEEEEEEee
Confidence 9999999998878999999999999875432234456799983 2678888888765
No 38
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.81 E-value=1.3e-18 Score=133.07 Aligned_cols=118 Identities=22% Similarity=0.401 Sum_probs=93.1
Q ss_pred CEEEEEEeeCCCCCCCCC---c----CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCcc
Q 029535 1 MEITILSAQGLKNTSFTL---F----SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAF 73 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~---~----~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l 73 (192)
|+|+|++|++|++.+... | .+.+||||++.+ ++ .+..+|++++ ++.||.|||+|.|.+.+ .
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~------~~---~~~~kT~~~~-~t~~P~Wne~f~~~v~~-~- 73 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV------DD---THIGKTSTKP-KTNSPVWNEEFTTEVHN-G- 73 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE------CC---EEEeEEeEcC-CCCCCCcceeEEEEcCC-C-
Confidence 689999999999887200 1 147899999976 32 2457899876 58999999999999965 1
Q ss_pred ccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 74 FANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 74 ~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
..|.|+|+|++.++.+++||.+.++|.++... .+.....||+|. ++|.|++.+++..
T Consensus 74 -----~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 -----RNLELTVFHDAAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred -----CEEEEEEEeCCCCCCCceEEEEEEEhHHhccc-CCCcccEEEEcc------CCcEEEEEEEEec
Confidence 47999999998887899999999999999753 123356799983 4689999999876
No 39
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.80 E-value=4.8e-19 Score=130.55 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=82.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . ++.+||||++.+ ++ ++.+|++++ ++.||.|||+|.|.+.+.. ...
T Consensus 2 L~V~v~~A~~L~~~~--~-~~~~dpyv~v~~------~~----~~~kT~v~~-~t~nP~Wne~f~f~v~~~~-----~~~ 62 (105)
T cd04050 2 LFVYLDSAKNLPLAK--S-TKEPSPYVELTV------GK----TTQKSKVKE-RTNNPVWEEGFTFLVRNPE-----NQE 62 (105)
T ss_pred EEEEEeeecCCCCcc--c-CCCCCcEEEEEE------CC----EEEeCcccc-CCCCCcccceEEEEeCCCC-----CCE
Confidence 689999999999887 2 468999999987 32 688999886 5899999999999998621 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++. |++||.+.++|.++...+ +.....||+|.+
T Consensus 63 l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~~ 102 (105)
T cd04050 63 LEIEVKDDKT---GKSLGSLTLPLSELLKEP-DLTLDQPFPLDN 102 (105)
T ss_pred EEEEEEECCC---CCccEEEEEEHHHhhccc-cceeeeeEecCC
Confidence 9999999875 789999999999997544 344567999863
No 40
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=2.7e-18 Score=133.39 Aligned_cols=120 Identities=25% Similarity=0.391 Sum_probs=93.1
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC--------ccEEEeEeecCCCCCCee-ceEEEEEcccCc
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH--------CHVYRTRVDDHGGVNPTW-GDKFYVPTDCNA 72 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~--------~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~ 72 (192)
.|++++|++|+ .+ .| +++||||++.+.+ ++.. .++++|++++ ++.||+| ||+|.|.+..+
T Consensus 4 ~~~~~~A~~L~-~~--~f-g~~DPyvki~~~~-----~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~- 72 (137)
T cd08691 4 SLSGLQARNLK-KG--MF-FNPDPYVKISIQP-----GKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT- 72 (137)
T ss_pred EEEEEEeCCCC-Cc--cC-CCCCceEEEEEEC-----CCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC-
Confidence 68999999998 55 56 4899999998742 1110 2578999996 5899999 99999998652
Q ss_pred cccCceeEEEEEEEEccCCCC---CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEE
Q 029535 73 FFANRYACIYLQLYTKTLISG---QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAI 138 (192)
Q Consensus 73 l~~~~~~~L~veV~d~~~~~~---d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v 138 (192)
..|.|+|+|++..+. |++||++.|||++|...+.......+|+|..++. ++.+|+|.+.+
T Consensus 73 ------~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 ------DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred ------CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 379999999764322 7899999999999986655555777999886543 37899998875
No 41
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=1.2e-18 Score=137.00 Aligned_cols=113 Identities=18% Similarity=0.356 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC---------
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN--------- 71 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~--------- 71 (192)
|.|+|++|++|.... |..||||.|.+.+. ..+.++.+|++++ ++.||+|||+|.|.+...
T Consensus 2 L~V~Vi~ArnL~~~~-----g~sDPYV~V~l~~~-----~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~ 70 (148)
T cd04010 2 LSVRVIECSDLALKN-----GTCDPYASVTLIYS-----NKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFE 70 (148)
T ss_pred EEEEEEeCcCCCCCC-----CCCCceEEEEEeCC-----cccCcccCCccEe-CCCCCccceEEEEEEeccccccccccc
Confidence 689999999999832 58999999987431 1123678999987 589999999999998410
Q ss_pred -ccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 72 -AFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 72 -~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
+..+.+...|.|+|||++.+++|++||.+.|||.++.... .....||+|..++
T Consensus 71 ~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~~ 124 (148)
T cd04010 71 MPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPRE 124 (148)
T ss_pred CCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccC--CcCcceeecCCcc
Confidence 0011122589999999998888999999999999986431 1235699997653
No 42
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=1.5e-18 Score=132.74 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=82.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEE-EcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYV-PTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f-~v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ ..++.+||||+|.+. ++ +.++.||++++ ++.||+|||+|.| .++...+ .+ .
T Consensus 18 L~V~Vi~a~~L~~~~--~~~~~~DpyV~v~l~------~~-~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~-~~--~ 84 (128)
T cd08388 18 LLVNIIECRDLPAMD--EQSGTSDPYVKLQLL------PE-KEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQL-QD--L 84 (128)
T ss_pred EEEEEEEeECCCCCC--CCCCCcCCEEEEEEe------CC-cCceeeccEEc-CCCCCceeeEEEEcccCHHHh-CC--C
Confidence 689999999999987 333689999999873 22 23678999987 4899999999999 4654222 11 3
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|+|++.+++|++||++.|+|+++.-..+++ -.+|.+|
T Consensus 85 ~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~-~~~~~~~ 126 (128)
T cd08388 85 SLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGE-LLVSREI 126 (128)
T ss_pred EEEEEEEEcCCCCCCceeEEEEEeccccCCCCCce-EEEEEec
Confidence 79999999998889999999999999995432223 4456665
No 43
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.6e-18 Score=129.52 Aligned_cols=116 Identities=16% Similarity=0.295 Sum_probs=91.9
Q ss_pred CEEEEEEeeCCCCCCCCC---cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTL---FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~---~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+|++|++|+..+... +.+.+||||++.+ + .+.++|+++. ++.||.|||.|.|.+... .
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~------~----~~~~kT~~~~-~t~~P~W~e~f~~~v~~~---~-- 66 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV------G----AQTFKSKVIK-ENLNPKWNEVYEAVVDEV---P-- 66 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEE------C----CEeEEccccC-CCCCCcccceEEEEeCCC---C--
Confidence 689999999999887210 1357899999976 2 2578999986 489999999999998752 1
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
...|.|+|+|++.+ +|++||.+.++|.++.... ....||+|.+ ..+|.|++.++|
T Consensus 67 ~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~----~~~G~~~~~~~~ 121 (121)
T cd08391 67 GQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG---FIDEWLPLED----VKSGRLHLKLEW 121 (121)
T ss_pred CCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC---ccceEEECcC----CCCceEEEEEeC
Confidence 24899999999887 8899999999999996432 2457999853 357999999875
No 44
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=8.9e-19 Score=133.89 Aligned_cols=108 Identities=17% Similarity=0.294 Sum_probs=84.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC-ccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH-CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~-~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|+.|+||+..+. .+..||||++.+.+ + ..+ ..+.||++.++ +.||+|||+|.|+++.+++ ++ .
T Consensus 16 L~V~V~~arnL~~~~~---~~~~dpyVKv~Llp----~-~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L-~~--~ 83 (124)
T cd08680 16 LVISVEQLRNLSALSI---PENSKVYVRVALLP----C-SSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL-YQ--K 83 (124)
T ss_pred EEEEEeEecCCccccc---CCCCCeEEEEEEcc----C-CCCCCceEEcCccCC-CCCCccccEEEEECCHHHh-hc--C
Confidence 6899999999998862 35789999998743 1 111 35889999874 8999999999999987443 22 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|.|++.+.++++++||.+.|+|+++....+ ....||.|
T Consensus 84 ~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 84 TLQVDVCSVGPDQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred EEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 899999999988889999999999999943322 23457764
No 45
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=7.9e-19 Score=130.70 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=78.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+.+.+||||+|.+.+ + +...++|++++ ++.||.|||+|.|.+...++.. ...
T Consensus 3 L~V~v~~a~~L~~~d--~~~~~~Dpyv~v~~~~------~-~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~--~~~ 70 (111)
T cd04041 3 LVVTIHRATDLPKAD--FGTGSSDPYVTASFAK------F-GKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKA--GER 70 (111)
T ss_pred EEEEEEEeeCCCccc--CCCCCCCccEEEEEcc------C-CCccEeeeeEC-CCCCCccceeEEEEeCchhccC--CCE
Confidence 689999999999988 3325899999997622 1 13568999987 4899999999999876522211 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||++.++|++|..
T Consensus 71 l~~~V~d~d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 71 LSCRLWDSDRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred EEEEEEeCCCCCCCCcceEEEEEHHHHhc
Confidence 99999999998889999999999999984
No 46
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.79 E-value=3.7e-18 Score=129.91 Aligned_cols=117 Identities=24% Similarity=0.409 Sum_probs=92.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|+ |...+ .+ +.+||||.+.+ ++ ..+.+|++.. ++.||.|||+|.|.+... ..
T Consensus 4 L~V~i~~a~-l~~~~--~~-~~~dPyv~v~~------~~---~~~~kT~v~~-~t~~P~Wne~f~~~~~~~-------~~ 62 (125)
T cd04021 4 LQITVESAK-LKSNS--KS-FKPDPYVEVTV------DG---QPPKKTEVSK-KTSNPKWNEHFTVLVTPQ-------ST 62 (125)
T ss_pred EEEEEEeeE-CCCCC--cC-CCCCeEEEEEE------CC---cccEEeeeeC-CCCCCccccEEEEEeCCC-------CE
Confidence 689999999 55554 23 47999999976 32 1378999886 589999999999998651 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcce--eEEEEEEeCC--CCcccEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVR--NLSYRLRARD--GSRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~--~~~y~L~~~~--G~k~~G~l~l~v 138 (192)
|.|+|||++.++.|++||++.++|+++...+.+... ..|+++.+++ +++..|.|++.+
T Consensus 63 l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 63 LEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999988899999999999999764444333 3589998754 347899998875
No 47
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1.8e-18 Score=132.68 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=80.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.++ ..||||.+.+ + .++.+|++.++ .||.|||+|.|.++.. + ..
T Consensus 4 L~V~Vv~Ar~L~~~~------~~dPYV~Ik~------g----~~k~kT~v~~~--~nP~WnE~F~F~~~~~---~---~~ 59 (127)
T cd08394 4 LCVLVKKAKLDGAPD------KFNTYVTLKV------Q----NVKSTTIAVRG--SQPCWEQDFMFEINRL---D---LG 59 (127)
T ss_pred EEEEEEEeeCCCCCC------CCCCeEEEEE------C----CEEeEeeECCC--CCCceeeEEEEEEcCC---C---CE
Confidence 689999999998754 3589999986 3 36889998853 6999999999999762 1 35
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|+|+|++.+ .|++||.+.|||.++... +..+...||+|.-
T Consensus 60 L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~-~~~~~~~Wy~L~~ 101 (127)
T cd08394 60 LVIELWNKGLI-WDTLVGTVWIPLSTIRQS-NEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEEeCCCc-CCCceEEEEEEhHHcccC-CCCCCCccEecCh
Confidence 99999999865 899999999999999754 3455678999973
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.78 E-value=1.6e-18 Score=129.15 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=76.2
Q ss_pred CEEEEEEeeCCCCCCCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+... -++.+||||++.+ + .+++||+++++ +.||+|||+|.|.+.+.. . ..
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~------~----~~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~-~~ 67 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISF------G----RRVFRTSWRRH-TLNPVFNERLAFEVYPHE---K-NF 67 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEE------C----CEeEeeeeecC-CCCCcccceEEEEEeCcc---C-CC
Confidence 689999999999886210 1135899999975 2 25789999974 799999999999986522 1 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|.|+|||++.++.|++||.+.++|++|..
T Consensus 68 ~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 68 DIQFKVLDKDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred EEEEEEEECCCCCCCcceEEEEEEHHHHHh
Confidence 799999999998899999999999999975
No 49
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.78 E-value=2.4e-18 Score=129.80 Aligned_cols=105 Identities=19% Similarity=0.382 Sum_probs=82.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+.+ + +..+++|++++ ++.||.|||+|.|.+....+ .. ..
T Consensus 18 L~V~v~~a~~L~~~d--~-~~~~dpyv~v~l~~------~-~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l-~~--~~ 83 (124)
T cd08385 18 LTVGIIQAADLPAMD--M-GGTSDPYVKVYLLP------D-KKKKFETKVHR-KTLNPVFNETFTFKVPYSEL-GN--KT 83 (124)
T ss_pred EEEEEEEeeCCCCcc--C-CCCCCCEEEEEEEc------C-CCCceecccCc-CCCCCceeeeEEEeCCHHHh-CC--CE
Confidence 689999999999887 3 35799999998632 2 13578999886 58999999999999876222 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|++.++++++||++.++|+++... .....||+|
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l 122 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLG---HVTEEWRDL 122 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCC---CCcceEEEc
Confidence 999999999888899999999999998542 234468876
No 50
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=4.7e-18 Score=129.48 Aligned_cols=113 Identities=25% Similarity=0.376 Sum_probs=88.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +..||||++.+ + .++.+|+++. ++.||.|||+|.|.+.. + . ..
T Consensus 3 L~V~vi~a~~L~~~d--~~-g~~DPyv~v~~------~----~~~~kT~~v~-~t~~P~Wne~f~f~~~~-~---~--~~ 62 (127)
T cd04027 3 ISITVVCAQGLIAKD--KT-GTSDPYVTVQV------G----KTKKRTKTIP-QNLNPVWNEKFHFECHN-S---S--DR 62 (127)
T ss_pred EEEEEEECcCCcCCC--CC-CCcCcEEEEEE------C----CEeeecceec-CCCCCccceEEEEEecC-C---C--CE
Confidence 689999999999988 34 57999999975 2 2467999886 48999999999998865 1 1 37
Q ss_pred EEEEEEEccCC-----------CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEE
Q 029535 81 IYLQLYTKTLI-----------SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAI 138 (192)
Q Consensus 81 L~veV~d~~~~-----------~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v 138 (192)
|.|+|||++.. +.+++||.+.+++.++... ...||.|...++ ++.+|.|.+++
T Consensus 63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 99999998742 3689999999999987421 246999986543 25899999864
No 51
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=3.5e-18 Score=134.16 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=83.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+. ..+..||||++.+.+ +. ....+.||++++ ++.||+|||+|.|.+.. .+ ..
T Consensus 31 L~V~Vi~ArnL~~~~~--~~g~sDPYVKv~Llp----~~-~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l----~~--~~ 96 (146)
T cd04028 31 LEVEVIRARGLVQKPG--SKVLPAPYVKVYLLE----GK-KCIAKKKTKIAR-KTLDPLYQQQLVFDVSP----TG--KT 96 (146)
T ss_pred EEEEEEEeeCCCcccC--CCCCcCCeEEEEEEC----CC-ccccceeceecC-CCCCCccCCeEEEEEcC----CC--CE
Confidence 6899999999987641 235789999998743 11 123588999996 58999999999999863 12 48
Q ss_pred EEEEEE-EccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLY-TKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~-d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|| |++.++++++||.+.|+|+++.... ....||+|...
T Consensus 97 L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~ 139 (146)
T cd04028 97 LQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPT 139 (146)
T ss_pred EEEEEEeCCCCCCCCceEEEEEEEcccccCCC---CceeEEecCCc
Confidence 999999 5777778999999999999984322 23569999754
No 52
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=2.4e-18 Score=130.85 Aligned_cols=105 Identities=17% Similarity=0.328 Sum_probs=83.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|+|++|+||+..+ .++..||||.+.+.+ + +.++.||++++ + .||+|||+|.|+ ++.+. +.+ .
T Consensus 18 L~V~Vi~a~nL~~~~---~~~~~d~yVk~~llp------~-~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~-l~~--~ 82 (124)
T cd08389 18 LTVTVIRAQDIPTKD---RGGASSWQVHLVLLP------S-KKQRAKTKVQR-G-PNPVFNETFTFSRVEPEE-LNN--M 82 (124)
T ss_pred EEEEEEEecCCCchh---cCCCCCcEEEEEEcc------C-Ccceeeccccc-C-CCCcccCEEEECCCCHHH-hcc--C
Confidence 689999999999987 246789999876532 2 24688999886 4 999999999998 76533 222 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|.|+|+|++.++++++||++.|+|+++... .....||+|.
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 8999999999888899999999999999532 3356788873
No 53
>PLN03008 Phospholipase D delta
Probab=99.78 E-value=2.4e-18 Score=163.87 Aligned_cols=107 Identities=22% Similarity=0.407 Sum_probs=88.1
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~ 101 (192)
++||||+|.+ ++ ..+.||+|++ ++.||+|||+|+|.+.+. ...|.|+|||++.+ ++++||++.
T Consensus 76 tSDPYV~I~L------g~---~rv~RTrVi~-n~~NPvWNE~F~f~vah~------~s~L~f~VkD~D~~-gaD~IG~a~ 138 (868)
T PLN03008 76 TSDPYVTVVV------PQ---ATLARTRVLK-NSQEPLWDEKFNISIAHP------FAYLEFQVKDDDVF-GAQIIGTAK 138 (868)
T ss_pred CCCceEEEEE------CC---cceeeEEeCC-CCCCCCcceeEEEEecCC------CceEEEEEEcCCcc-CCceeEEEE
Confidence 5799999987 32 3567999986 588999999999999882 25899999999998 468999999
Q ss_pred EeCccccCCCCCcceeEEEEEEeCCCC--cccEEEEEEEEEeecCCCCC
Q 029535 102 IPVNDIGFPPGGSVRNLSYRLRARDGS--RGHGVVNLAIKLEPVVPDTS 148 (192)
Q Consensus 102 IpL~~l~~~~~~~~~~~~y~L~~~~G~--k~~G~l~l~v~f~~~~~~~~ 148 (192)
|||.+|... .....|++|.+.+|. |..|.|+|+++|.|+..++.
T Consensus 139 IPL~~L~~G---e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~ 184 (868)
T PLN03008 139 IPVRDIASG---ERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHS 184 (868)
T ss_pred EEHHHcCCC---CceEEEEEccccCCCCCCCCcEEEEEEEEEEcccccc
Confidence 999999753 334579999988763 35679999999999988763
No 54
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.78 E-value=1e-17 Score=126.28 Aligned_cols=123 Identities=19% Similarity=0.310 Sum_probs=94.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..++. ..+..||||++.+++. +..+..+.||+++.+++.||.|||+|.|.+.... ...
T Consensus 4 l~v~vi~a~~L~~~~~~-~~~~~dpyv~v~l~~~----~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-----~~~ 73 (128)
T cd00275 4 LTIKIISGQQLPKPKGD-KGSIVDPYVEVEIHGL----PADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-----LAF 73 (128)
T ss_pred EEEEEEeeecCCCCCCC-CCCccCCEEEEEEEeC----CCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-----eEE
Confidence 68999999999987621 1247899999998642 1101367899998766669999999999987521 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC-cccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS-RGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~-k~~G~l~l~v~f 140 (192)
|.|+|+|++.. ++++||++.++|.++... ..+++|.+++|. ...|.|.+.+++
T Consensus 74 l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 74 LRFVVYDEDSG-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEeCCCC-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99999999887 899999999999999532 237899887763 356888888775
No 55
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=4.4e-18 Score=128.49 Aligned_cols=106 Identities=13% Similarity=0.363 Sum_probs=84.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . .+.+||||++.+. ++ +.++++|++.+ ++.||.|||+|.|.+....+ .. ..
T Consensus 18 L~V~v~~a~~L~~~d--~-~g~~dpyv~v~l~------~~-~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l-~~--~~ 83 (124)
T cd08387 18 LNVKLIQARNLQPRD--F-SGTADPYCKVRLL------PD-RSNTKQSKIHK-KTLNPEFDESFVFEVPPQEL-PK--RT 83 (124)
T ss_pred EEEEEEEeeCCCCCC--C-CCCCCCeEEEEEe------cC-CCCcEeCceEc-CCCCCCcccEEEEeCCHHHh-CC--CE
Confidence 679999999999887 3 3589999999862 11 13578999986 58999999999999876322 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|+|++.+++|++||.+.|+|+++.... ....||+|.
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 9999999998888999999999999996332 235688874
No 56
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=5.2e-18 Score=127.35 Aligned_cols=108 Identities=18% Similarity=0.315 Sum_probs=83.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ .+.+.+||||+|.+.+ ......+.+|++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~--~~~~~~dpyv~v~l~~-----~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l-~~--~~ 84 (123)
T cd08521 16 LEVHIKECRNLAYAD--EKKKRSNPYVKVYLLP-----DKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQL-ET--RT 84 (123)
T ss_pred EEEEEEEecCCCCcC--CCCCCCCcEEEEEEec-----CCCcCceeeccccC-CCCCCcccceEEEeCCHHHh-CC--CE
Confidence 689999999999886 2345899999998632 11113578999876 58999999999999876332 22 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|++.++++++||++.++|+++.... ....||+|
T Consensus 85 l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 85 LQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred EEEEEEeCCCCcCCceeeEEEEecccccccC---CCccEEEC
Confidence 9999999998888999999999999995322 23458875
No 57
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=1e-17 Score=124.53 Aligned_cols=114 Identities=25% Similarity=0.426 Sum_probs=90.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||+|.+ ++ ...++|+++. ++.||.|||+|.|.+... . ...
T Consensus 1 l~v~vi~a~~L~~~~--~~-~~~dpyv~v~~------~~---~~~~~T~v~~-~~~~P~Wne~f~~~~~~~---~--~~~ 62 (115)
T cd04040 1 LTVDVISAENLPSAD--RN-GKSDPFVKFYL------NG---EKVFKTKTIK-KTLNPVWNESFEVPVPSR---V--RAV 62 (115)
T ss_pred CEEEEEeeeCCCCCC--CC-CCCCCeEEEEE------CC---Ccceeeceec-CCCCCcccccEEEEeccC---C--CCE
Confidence 789999999999987 33 57999999976 22 2467999886 589999999999998762 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNL 136 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l 136 (192)
|.|+|||++.++++++||++.+++.++... .....|++|... |+...|.|-+
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~-g~~~~~~~~~ 114 (115)
T cd04040 63 LKVEVYDWDRGGKDDLLGSAYIDLSDLEPE---ETTELTLPLDGQ-GGGKLGAVFL 114 (115)
T ss_pred EEEEEEeCCCCCCCCceEEEEEEHHHcCCC---CcEEEEEECcCC-CCccCceEEc
Confidence 999999999888899999999999998643 235678998754 4467887753
No 58
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.76 E-value=5.7e-18 Score=128.18 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=80.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|+.|++|++++ .+.+||||++.+.+ +. .+..+.||++++ ++.||.|||+|.|.+....+ + ..
T Consensus 14 L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p----~~-~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~---~-~~ 79 (119)
T cd08685 14 LTLHVLEAKGLRSTN----SGTCNSYVKISLSP----DK-EVRFRQKTSTVP-DSANPLFHETFSFDVNERDY---Q-KR 79 (119)
T ss_pred EEEEEEEEECCCCCC----CCCCCeeEEEEEEe----CC-CCcceEeCcccc-CCCCCccccEEEEEcChHHh---C-CE
Confidence 689999999999886 25799999998743 11 124577999886 58999999999999976322 1 36
Q ss_pred EEEEEEEccCCC-CCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLIS-GQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~-~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|||.+... ++++||.+.|||.++.... ....||.|
T Consensus 80 l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 80 LLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred EEEEEECCCCCcCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 889999988764 4789999999999996322 23458865
No 59
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=7.9e-18 Score=132.84 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=84.3
Q ss_pred CEEEEEEeeCCCCCCCCCc-----------CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc
Q 029535 1 MEITILSAQGLKNTSFTLF-----------SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD 69 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~-----------~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~ 69 (192)
|.|+|++|++|+.++...+ .+.+||||+|.+ ++ ++.||++++ ++.||+|||+|.|++.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~------~g----~~~kT~v~~-~t~nPvWNE~f~f~v~ 70 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF------AG----QKVKTSVKK-NSYNPEWNEQIVFPEM 70 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE------CC----EeeecceEc-CCCCCCcceEEEEEee
Confidence 6899999999999873111 136899999986 32 467999987 5899999999999875
Q ss_pred cCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCC-C---cceeEEEEEEe
Q 029535 70 CNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPG-G---SVRNLSYRLRA 124 (192)
Q Consensus 70 ~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~-~---~~~~~~y~L~~ 124 (192)
.... ...|.|+|+|++.+++|++||.+.|+|.++..... + ...+.||.+..
T Consensus 71 ~p~~----~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 71 FPPL----CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred CCCc----CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 4221 14799999999998899999999999999965321 1 23567888864
No 60
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.76 E-value=1.1e-17 Score=126.48 Aligned_cols=107 Identities=17% Similarity=0.289 Sum_probs=83.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ .+ +..||||+|.+.+ ++ ....++||++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 18 L~V~vi~a~~L~~~~--~~-~~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l-~~--~~ 85 (127)
T cd04030 18 LIVTVHKCRNLPPCD--SS-DIPDPYVRLYLLP----DK-SKSTRRKTSVKK-DNLNPVFDETFEFPVSLEEL-KR--RT 85 (127)
T ss_pred EEEEEEEEECCCCcc--CC-CCCCceEEEEEEc----CC-CCCceEeccccc-CCCCCEECeEEEEecCHHHh-cC--CE
Confidence 689999999999988 33 5899999998743 11 114688999987 47999999999999876332 22 48
Q ss_pred EEEEEEEccCC--CCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLI--SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~--~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|.+.+ +++++||++.|+|.++... .....||+|
T Consensus 86 l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L 126 (127)
T cd04030 86 LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS---KGFTQWYDL 126 (127)
T ss_pred EEEEEEECCcccCCCCceEEEEEEeccccccc---CCccceEEC
Confidence 99999999875 5789999999999998542 223568876
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=2.1e-17 Score=124.68 Aligned_cols=107 Identities=22% Similarity=0.371 Sum_probs=81.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +.+||||++.+. ++ +.++.+|++.+ ++.||.|||+|.|.....+...+ ..
T Consensus 18 L~v~v~~a~~L~~~d--~~-~~~dpyv~v~~~------~~-~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~--~~ 84 (125)
T cd08386 18 LTLKILKAVELPAKD--FS-GTSDPFVKIYLL------PD-KKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQ--RV 84 (125)
T ss_pred EEEEEEEecCCCCcc--CC-CCCCceEEEEEC------CC-CCcceeeeeec-CCCCCccceeEEEcccCHHHhCC--CE
Confidence 689999999999887 33 579999999762 22 13578999987 58999999999997422111122 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
|.|+|+|++.++++++||++.++|+++... .....||.|.
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~ 124 (125)
T cd08386 85 LYLQVLDYDRFSRNDPIGEVSLPLNKVDLT---EEQTFWKDLK 124 (125)
T ss_pred EEEEEEeCCCCcCCcEeeEEEEecccccCC---CCcceEEecC
Confidence 999999999888899999999999999642 2245688763
No 62
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.75 E-value=5.3e-17 Score=120.70 Aligned_cols=115 Identities=20% Similarity=0.370 Sum_probs=83.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+.. +.+||||.+.+ ++ ..+++|++.+ + .||.|||+|.|.+....+ ....
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~------~~---~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~---~~~~ 61 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSL------DQ---VEVARTKTVE-K-LNPFWGEEFVFDDPPPDV---TFFT 61 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEE------CC---EEeEecceEE-C-CCCcccceEEEecCCccc---cEEE
Confidence 78999999999865 37899999976 32 2457999886 4 999999999999977321 1247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKL 140 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f 140 (192)
|.|.++|.+...++..+|. ++|..+.. +.....||+|...++ ++..|+|+|.++|
T Consensus 62 l~i~v~d~~~~~~~~~~g~--v~l~~~~~---~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 62 LSFYNKDKRSKDRDIVIGK--VALSKLDL---GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecccCCCeeEEEE--EEecCcCC---CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 8888888876545555555 55554432 123456999975443 3578999999986
No 63
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.74 E-value=5.4e-17 Score=127.44 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=92.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|++|++|+.++ ||||+|.+ ++ ...+||++.. ++.||.|||.|.|...+ . ...
T Consensus 13 L~v~V~EAk~Lp~~~--------~~Y~~i~L------d~---~~vaRT~v~~-~~~nP~W~E~F~f~~~~-~-----~~~ 68 (146)
T cd04013 13 LKLWIIEAKGLPPKK--------RYYCELCL------DK---TLYARTTSKL-KTDTLFWGEHFEFSNLP-P-----VSV 68 (146)
T ss_pred EEEEEEEccCCCCcC--------CceEEEEE------CC---EEEEEEEEEc-CCCCCcceeeEEecCCC-c-----ccE
Confidence 689999999997542 79999987 42 3567999986 47899999999998766 2 247
Q ss_pred EEEEEEEcc-CC---CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCC---------cccEEEEEEEEEeecCCCC
Q 029535 81 IYLQLYTKT-LI---SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGS---------RGHGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 81 L~veV~d~~-~~---~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~---------k~~G~l~l~v~f~~~~~~~ 147 (192)
|.|.|++.+ .. .++++||.+.||+.++... .....||+|...+|+ +..+.|+++++|.+....|
T Consensus 69 l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 69 ITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEccCccccccCCcEEEEEEEEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 999997543 22 2678999999999999742 334569999987763 2336999999999875433
No 64
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=2.2e-17 Score=124.28 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEccc-CccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDC-NAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~-~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+. .....+.+|++++ ++.||+|||+|.|.+.. .++ . ..
T Consensus 18 L~V~vi~a~~L~~~~--~~-~~~dpyv~v~l~~~-----~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l-~--~~ 85 (125)
T cd04031 18 LIVTVLQARDLPPRD--DG-SLRNPYVKVYLLPD-----RSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETL-K--ER 85 (125)
T ss_pred EEEEEEEecCCCCcC--CC-CCCCCEEEEEEccC-----CCccccccccccC-CCCCCccccEEEEcccCHHHh-C--CC
Confidence 689999999999987 33 58999999987321 1113578999886 58999999999998533 121 1 24
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
.|.|+|+|++.++++++||.+.++|++... . + ...||+|
T Consensus 86 ~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~-~--~~~W~~L 124 (125)
T cd04031 86 TLEVTVWDYDRDGENDFLGEVVIDLADALL-D-D--EPHWYPL 124 (125)
T ss_pred EEEEEEEeCCCCCCCcEeeEEEEecccccc-c-C--CcceEEC
Confidence 899999999988889999999999999432 1 2 2358887
No 65
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=3.3e-17 Score=124.03 Aligned_cols=103 Identities=24% Similarity=0.344 Sum_probs=83.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||++.+ ++ ..+.+|++.. ++.||.|||+|.|.+.+. ...
T Consensus 3 L~V~Vi~a~~L~~~d--~~-g~~DPYv~v~~------~~---~~~~kT~~~~-~t~~P~Wne~f~~~v~~~------~~~ 63 (120)
T cd04045 3 LRLHIRKANDLKNLE--GV-GKIDPYVRVLV------NG---IVKGRTVTIS-NTLNPVWDEVLYVPVTSP------NQK 63 (120)
T ss_pred EEEEEEeeECCCCcc--CC-CCcCCEEEEEE------CC---EEeeceeEEC-CCcCCccCceEEEEecCC------CCE
Confidence 689999999999987 34 58999999976 22 2568899875 589999999999998762 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|+|++.++.|++||++.++|.++..... .-||.|.+.+
T Consensus 64 L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~----~~~~~~~~~~ 105 (120)
T cd04045 64 ITLEVMDYEKVGKDRSLGSVEINVSDLIKKNE----DGKYVEYDDE 105 (120)
T ss_pred EEEEEEECCCCCCCCeeeEEEEeHHHhhCCCC----CceEEecCCC
Confidence 99999999998889999999999999975422 3488888643
No 66
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.74 E-value=7.3e-17 Score=127.87 Aligned_cols=131 Identities=17% Similarity=0.240 Sum_probs=95.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEE-cCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCc--cc-cC
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITT-YPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNA--FF-AN 76 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~-y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~--l~-~~ 76 (192)
.+++|+.|.+++.... .-.+..||||++.+ |+ ++ +.++.||++++ ++.||+|||+|.|.+.... +. .-
T Consensus 4 ~el~i~~~~~~~l~~~-~~~~~~DpYVk~~l~~p-----~~-~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l 75 (155)
T cd08690 4 IELTIVRCIGIPLPSG-WNPKDLDTYVKFEFPYP-----NE-EPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVF 75 (155)
T ss_pred eEEEEEEeeccccCCC-cCCCCCCeEEEEEEecC-----CC-CCceeecCccc-CCCCCcccceEEEEeccccchhhhhc
Confidence 4799999999654431 12357999999985 33 22 35799999997 5899999999999996521 00 00
Q ss_pred ceeEEEEEEEEccCC-CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 77 RYACIYLQLYTKTLI-SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 77 ~~~~L~veV~d~~~~-~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
....|.|+|||++.+ .+|++||++.++|+.+....+ ...+++|.+... ...|.|++.++.-.+
T Consensus 76 ~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~---~~~~~~L~~~~k-~~Gg~l~v~ir~r~p 139 (155)
T cd08690 76 KRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE---IHESVDLMDGRK-ATGGKLEVKVRLREP 139 (155)
T ss_pred cCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc---ceEEEEhhhCCC-CcCCEEEEEEEecCC
Confidence 114699999999876 579999999999999964322 234899885332 567899999998764
No 67
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=4.3e-17 Score=121.43 Aligned_cols=103 Identities=22% Similarity=0.332 Sum_probs=81.8
Q ss_pred cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeE
Q 029535 19 FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLG 98 (192)
Q Consensus 19 ~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG 98 (192)
+.|.+||||.+.+ ++ ...++|++++ ++.||.|||+|.|.+.+. . ...|.|+|+|++.+ +|++||
T Consensus 9 ~~G~~dPYv~v~v------~~---~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~--~~~l~i~v~d~~~~-~d~~iG 72 (111)
T cd04052 9 KTGLLSPYAELYL------NG---KLVYTTRVKK-KTNNPSWNASTEFLVTDR---R--KSRVTVVVKDDRDR-HDPVLG 72 (111)
T ss_pred cCCCCCceEEEEE------CC---EEEEEEeeec-cCCCCccCCceEEEecCc---C--CCEEEEEEEECCCC-CCCeEE
Confidence 3468999999976 32 2467999876 489999999999999762 1 24799999999988 899999
Q ss_pred EEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 99 WCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 99 ~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+.++|+++.... .....||+|. + +++|.|++++.|.|+
T Consensus 73 ~~~v~L~~l~~~~--~~~~~w~~L~---~-~~~G~i~~~~~~~p~ 111 (111)
T cd04052 73 SVSISLNDLIDAT--SVGQQWFPLS---G-NGQGRIRISALWKPV 111 (111)
T ss_pred EEEecHHHHHhhh--hccceeEECC---C-CCCCEEEEEEEEecC
Confidence 9999999996432 2234689985 3 468999999999885
No 68
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.72 E-value=4.4e-17 Score=125.04 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=77.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+.+. +...+..+.||++++ ++.||+|||+|.|.+..... ......
T Consensus 18 L~V~Vi~A~~L~~~~--~~-g~~dPyv~v~l~~~---~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~-~~~~~~ 89 (133)
T cd04009 18 LRVEILNARNLLPLD--SN-GSSDPFVKVELLPR---HLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQC-SVEGAL 89 (133)
T ss_pred EEEEEEEeeCCCCcC--CC-CCCCCEEEEEEECC---CcCccccccccccCc-CCCCCccCCEEEEEechhhc-ccCCCE
Confidence 679999999999987 33 58999999986321 000013578999987 57999999999999865211 111248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||++.++|.++..
T Consensus 90 l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 90 LLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999988889999999999999964
No 69
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.72 E-value=3.5e-17 Score=126.87 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=76.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ ..+.+||||+|.+++ ++ .+..+.||++++ ++.||+|||+|.|.++...+ +. ..
T Consensus 17 L~V~Vi~A~nL~~~~---~~g~~DpyVkv~l~~----~~-~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l-~~--~~ 84 (136)
T cd08406 17 LTVVVVKARNLVWDN---GKTTADPFVKVYLLQ----DG-RKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVL-QD--LS 84 (136)
T ss_pred EEEEEEEeeCCCCcc---CCCCCCeEEEEEEEe----CC-ccccccCCcccc-CCCCCeeceeEEEECCHHHh-CC--cE
Confidence 689999999999887 236899999998753 22 123577899886 58999999999999987432 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||.+.|.....
T Consensus 85 l~~~V~~~d~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 85 LRVTVAESTEDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred EEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence 999999999888999999999987643
No 70
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=1.1e-16 Score=120.23 Aligned_cols=106 Identities=17% Similarity=0.345 Sum_probs=81.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+. ..+..||||++.+.. + ..+..+|++++ ++.||+|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~------~-~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l-~~--~~ 82 (123)
T cd08390 16 LTVSLIKARNLPPRTK--DVAHCDPFVKVCLLP------D-ERRSLQSKVKR-KTQNPNFDETFVFQVSFKEL-QR--RT 82 (123)
T ss_pred EEEEEEEecCCCCccC--CCCCCCcEEEEEEee------C-CCCceEeeeEc-CCCCCccceEEEEEcCHHHh-cc--cE
Confidence 6899999999998862 135799999997621 1 13567899886 58999999999999876322 11 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|.|+|+|.+.++++++||++.++|.++.... ....|++|
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L 121 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK---GGVVWRDL 121 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCC---CceEEEeC
Confidence 9999999998878999999999999996432 23457776
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.71 E-value=5.2e-17 Score=126.37 Aligned_cols=96 Identities=16% Similarity=0.301 Sum_probs=77.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|+||+..+.+..+ .+||||.|.+.. ++ ++..+.||++++ ++.||+|||+|.|.++++.+ .. ..
T Consensus 17 L~V~V~karnL~~~d~~~~~-~~DpYVKv~l~~----~~-~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L-~~--~~ 86 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLL-GIDVSVKVTLKH----QN-AKLKKKQTKRAK-HKINPVWNEMIMFELPSELL-AA--SS 86 (138)
T ss_pred EEEEEEEecCCCccccCCCC-CCCeEEEEEEEc----CC-cccceeccceee-CCCCCccccEEEEECCHHHh-Cc--cE
Confidence 68999999999988721122 489999998743 22 224578999886 58999999999999987432 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++++++||.+.+++..
T Consensus 87 L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 87 VELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEEEeCCCCcCcceeceEEecCcC
Confidence 99999999999999999999999975
No 72
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=2.4e-17 Score=125.88 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=82.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+ + +.+..+.+|++++ ++.||.|||+|.|.+....+ . ...
T Consensus 15 L~V~Vi~a~~L~~~d--~~-~~~DpyV~v~l~~----~-~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l-~--~~~ 82 (133)
T cd08384 15 LIVGIIRCVNLAAMD--AN-GYSDPFVKLYLKP----D-AGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDL-A--KKT 82 (133)
T ss_pred EEEEEEEEcCCCCcC--CC-CCCCcEEEEEEEc----C-CCccCCceeeeEe-ccCCCCcccEEEEECCHHHh-C--CCE
Confidence 689999999999987 33 5899999998732 1 1123578999987 58999999999999876322 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR 125 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~ 125 (192)
|.|+|+|++.+++|++||.+.+++.... +....||++...
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l~~ 122 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINAKG-----ERLRHWLDCLKN 122 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCCCC-----chHHHHHHHHhC
Confidence 9999999998888999999999998532 122347777654
No 73
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.71 E-value=3.9e-16 Score=118.39 Aligned_cols=110 Identities=21% Similarity=0.342 Sum_probs=79.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCC-ccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKH-CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~-~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|+|+|++|+||+ +..||||++.+ +++.. ..++||++++ ++.||+|||+|.|.+.. . .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v------~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-s------~ 58 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEV------DSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-S------Q 58 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEE------cCccccceeeeeeeec-CCCCCccceEEEEEeCC-C------C
Confidence 789999999996 24799999976 32211 3679999996 58999999999999975 2 4
Q ss_pred EEEEEEEEc-------cCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 80 CIYLQLYTK-------TLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 80 ~L~veV~d~-------~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
.|.+.|||+ +.++.|++||++.|.|..=..... ..+.....| +| =+|+++++|
T Consensus 59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~-~~~~~~~~~---~~----~~~~~s~~~ 118 (118)
T cd08686 59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTK-KWQEKVISM---NG----ITVNLSIKF 118 (118)
T ss_pred EEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccC-CeeEEEEEe---cC----EEEEEEEeC
Confidence 899999997 355689999999988864322222 223334443 22 267777765
No 74
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.70 E-value=3e-17 Score=126.15 Aligned_cols=114 Identities=13% Similarity=0.214 Sum_probs=84.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||++.+.+ ++ ....+.||++++ ++.||.|||+|.|.+....+ + ...
T Consensus 17 L~V~vi~a~~L~~~d--~~-g~~Dpyv~v~l~~----~~-~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~-~--~~~ 84 (136)
T cd08404 17 LTVVVLKARHLPKMD--VS-GLADPYVKVNLYY----GK-KRISKKKTHVKK-CTLNPVFNESFVFDIPSEEL-E--DIS 84 (136)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCeEEEEEEEc----CC-ceeeeEcCcccc-CCCCCccCceEEEECCHHHh-C--CCE
Confidence 679999999999987 33 5899999998742 11 112467899886 58999999999999876322 2 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG 132 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G 132 (192)
|.|+|+|++.++++++||++.+++.... . ....|+.|.+..| ++.+
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~~~~~~~~--~---~~~~w~~l~~~~~-~~i~ 130 (136)
T cd08404 85 VEFLVLDSDRVTKNEVIGRLVLGPKASG--S---GGHHWKEVCNPPR-RQIA 130 (136)
T ss_pred EEEEEEECCCCCCCccEEEEEECCcCCC--c---hHHHHHHHHhCCC-Ceee
Confidence 9999999999889999999999999831 1 1234777765444 4433
No 75
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.70 E-value=1.3e-16 Score=125.03 Aligned_cols=88 Identities=18% Similarity=0.364 Sum_probs=76.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ . +.+||||++.+ + .++.+|++++ ++.||+|||+|.|.+.+. ...
T Consensus 4 L~V~Vi~a~nL~~~d--~--~~sDPYV~v~~------g----~~~~kT~vvk-~t~nP~WnE~f~f~i~~~------~~~ 62 (145)
T cd04038 4 LKVRVVRGTNLAVRD--F--TSSDPYVVLTL------G----NQKVKTRVIK-KNLNPVWNEELTLSVPNP------MAP 62 (145)
T ss_pred EEEEEEeeECCCCCC--C--CCcCcEEEEEE------C----CEEEEeeeEc-CCCCCeecccEEEEecCC------CCE
Confidence 689999999999887 3 47999999976 2 3689999987 489999999999999772 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|||++.+++|++||.+.+++.++..
T Consensus 63 l~~~V~D~d~~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 63 LKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhhh
Confidence 99999999998899999999999999964
No 76
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=1.5e-16 Score=122.19 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=75.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .+ +.+||||+|.+.. ++.+..+.+|++++ ++.||.|||+|.|.+..+.+ . ...
T Consensus 17 L~v~vi~a~~L~~~~--~~-g~~dpyV~v~l~~-----~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~-~--~~~ 84 (136)
T cd08405 17 ITVNIIKARNLKAMD--IN-GTSDPYVKVWLMY-----KDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERL-R--ETT 84 (136)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCceEEEEEEe-----CCCccccccCccee-CCCCCcccceEEEeCCHHHh-C--CCE
Confidence 689999999999887 33 5899999998632 11123567899886 58999999999999875222 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.+++|++||.+.+++.+.
T Consensus 85 l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 85 LIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EEEEEEECCCCCCCcEeEEEEECCccC
Confidence 999999999888899999999999876
No 77
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.69 E-value=4.5e-16 Score=120.48 Aligned_cols=111 Identities=22% Similarity=0.393 Sum_probs=84.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccc------
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFF------ 74 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~------ 74 (192)
|.|+|++|++|+.+. . +.+||||+|.+.. +...++++|+++. ++.||.|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~~---~-g~~dPyv~v~~~~------~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~-~~~~~~~~ 68 (137)
T cd08675 1 LSVRVLECRDLALKS---N-GTCDPFARVTLNY------SSKTDTKRTKVKK-KTNNPRFDEAFYFELTIG-FSYEKKSF 68 (137)
T ss_pred CEEEEEEccCCCccc---C-CCCCcEEEEEEec------CCcCCeeccceee-CCCCCCcceEEEEEcccc-cccccccc
Confidence 789999999998872 2 5899999997622 1124688999987 489999999999998762 10
Q ss_pred -----cCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 75 -----ANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 75 -----~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
+.....|.|+|||++.++++++||.+.++|.++... .....||+|...+
T Consensus 69 ~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 69 KVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred ccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 001248999999999887899999999999998632 1234589987653
No 78
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=2.3e-16 Score=125.58 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=81.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc-cCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD-CNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~-~~~l~~~~~~ 79 (192)
|.|+|++|++|+..+ . .+.+||||++.+.. ++.+.+++||+++++ +.||.|||+|.|.+. ...+ . ..
T Consensus 29 L~V~Vi~A~nL~~~d--~-~g~~DPYVkv~l~~-----~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l-~--~~ 96 (162)
T cd04020 29 LHVWVKEAKNLPALK--S-GGTSDSFVKCYLLP-----DKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL-S--QA 96 (162)
T ss_pred EEEEEEeeeCCCCCC--C-CCCCCCEEEEEEEc-----CCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh-C--CC
Confidence 689999999999987 3 35899999997742 111246889999874 799999999999853 2122 1 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|.|+|||++.+++|++||.+.++++++..... ...||.+.
T Consensus 97 ~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~---~~~w~~~~ 137 (162)
T cd04020 97 CLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ---AVDWMDST 137 (162)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEeCCccccCCC---ccccccCC
Confidence 799999999998889999999999999853221 23466653
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=2.2e-16 Score=122.55 Aligned_cols=97 Identities=15% Similarity=0.421 Sum_probs=77.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ . ++..||||++.+... .+ ....+.||++++ ++.||+|||+|.|.++..++ + ...
T Consensus 17 L~V~VikarnL~~~~--~-~~~~dpyVkv~llp~---~~-~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l-~--~~~ 85 (138)
T cd08408 17 LSVEVIKGSNFKNLA--M-NKAPDTYVKLTLLNS---DG-QEISKSKTSIRR-GQPDPEFKETFVFQVALFQL-S--EVT 85 (138)
T ss_pred EEEEEEEecCCCccc--c-CCCCCeeEEEEEEeC---CC-cceeeccceeec-CCCCCcEeeeEEEECCHHHh-C--ccE
Confidence 689999999999987 3 458999999987431 11 112467999986 58999999999999987432 2 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|+|.+.++++++||++.+++....
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 9999999998889999999999987654
No 80
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=3.8e-16 Score=118.97 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=85.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +..||||+|.+.+. +. ...+++|++.+ ++.||.|||+|.|.+.... . ...
T Consensus 15 l~v~i~~a~nL~~~~--~~-~~~dpyv~v~~~~~---~~--~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~--~--~~~ 81 (131)
T cd04026 15 LTVEVREAKNLIPMD--PN-GLSDPYVKLKLIPD---PK--NETKQKTKTIK-KTLNPVWNETFTFDLKPAD--K--DRR 81 (131)
T ss_pred EEEEEEEeeCCCCcC--CC-CCCCCcEEEEEEcC---CC--CCceecceeec-CCCCCCccceEEEeCCchh--c--CCE
Confidence 579999999999887 33 47999999987321 11 13678999986 5799999999999987621 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARD 126 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~ 126 (192)
|.|+|+|++.++++++||.+.++|+++... ....||+|.+.+
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 999999998888899999999999999743 234699998653
No 81
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.68 E-value=2.8e-16 Score=121.07 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=80.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ .+ +.+||||++.+.. +.....+.+|++++ ++.||+|||+|.|.+..+.+ . ...
T Consensus 16 L~V~vi~a~~L~~~d--~~-g~~DPyV~v~l~~-----~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l-~--~~~ 83 (135)
T cd08410 16 LNVDIIRAKQLLQTD--MS-QGSDPFVKIQLVH-----GLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEEL-E--NVS 83 (135)
T ss_pred EEEEEEEecCCCccc--CC-CCCCeEEEEEEEc-----CCcccceEcCcccc-CCCCCccceeEEEeCCHHHh-C--CCE
Confidence 689999999999988 34 5899999998621 21113467899886 58999999999999965332 1 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|+|++..+++++||.+.|...... ++ ....|+.+....+
T Consensus 84 l~~~V~d~d~~~~~~~iG~~~l~~~~~~--~~--~~~~W~~l~~~~~ 126 (135)
T cd08410 84 LVFTVYGHNVKSSNDFIGRIVIGQYSSG--PS--ETNHWRRMLNSQR 126 (135)
T ss_pred EEEEEEeCCCCCCCcEEEEEEEcCccCC--ch--HHHHHHHHHhCCC
Confidence 9999999998889999999987654432 11 1123666655433
No 82
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=2.6e-16 Score=120.79 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=72.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+. + .+ +..||||+|.+ ++ +++||++++ ++.||+|||+|.|...... . ...
T Consensus 30 L~V~V~~A~~L~~-d--~~-g~~DPYVkV~~------~~----~~~kT~vi~-~t~nPvWNE~F~f~~~~~~--~--~~~ 90 (127)
T cd04032 30 LTVTVLRATGLWG-D--YF-TSTDGYVKVFF------GG----QEKRTEVIW-NNNNPRWNATFDFGSVELS--P--GGK 90 (127)
T ss_pred EEEEEEECCCCCc-C--cC-CCCCeEEEEEE------CC----ccccCceec-CCCCCcCCCEEEEecccCC--C--CCE
Confidence 6899999999984 4 34 47899999975 32 478999996 5799999999999753311 1 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|||++.+++|++||.+.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999999999889999999999999654
No 83
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=3.1e-16 Score=120.44 Aligned_cols=95 Identities=18% Similarity=0.320 Sum_probs=75.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|+..+ . .+.+||||+|.+.+ ++ ....+.+|++.+ ++.||.|||+|.|.+....+ +. ..
T Consensus 17 l~V~Vi~a~~L~~~d--~-~g~~dpyv~v~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l-~~--~~ 84 (136)
T cd08402 17 LTVVILEAKNLKKMD--V-GGLSDPYVKIHLMQ----NG-KRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQI-QK--VH 84 (136)
T ss_pred EEEEEEEeeCCCccc--C-CCCCCCeEEEEEEE----CC-cccceeecccee-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999887 3 35899999998621 11 113467899875 68999999999999876322 11 47
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.+++|++||.+.|++...
T Consensus 85 l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 85 LIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred EEEEEEeCCCCCCCceeEEEEECCccC
Confidence 999999999988899999999999865
No 84
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.67 E-value=4.1e-16 Score=120.97 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=76.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+++.. .+..||||+|.+++. + ++..+.||++.++...||+|||+|.|.++. +.. ...
T Consensus 16 LtV~VikarnL~~~~~---~~~~dpYVKV~L~~~----~-k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~~---~v~ 83 (135)
T cd08692 16 IQLQILEAQNLPSSST---PLTLSFFVKVGMFST----G-GLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QEH---GIQ 83 (135)
T ss_pred EEEEEEEccCCCcccC---CCCCCcEEEEEEEEC----C-CcceeecCccEECCCCCceecceEEEeCCc-hhh---eeE
Confidence 6899999999998741 346799999998752 2 235688999987544579999999999987 322 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|++.++++++||.+.+.....
T Consensus 84 l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 84 FLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEeCCCCcCCceEEEEEECCccC
Confidence 999999999888999999999999764
No 85
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.67 E-value=3.3e-16 Score=119.94 Aligned_cols=94 Identities=19% Similarity=0.378 Sum_probs=74.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|++.+ .+ +.+||||+|.+.. ++ .+..+.+|++.+ ++.||.|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~A~~L~~~d--~~-g~~dpyvkv~l~~----~~-~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~-~~--~~ 83 (134)
T cd08403 16 LTLTIIKARNLKAMD--IT-GFSDPYVKVSLMC----EG-RRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV-DN--VS 83 (134)
T ss_pred EEEEEEEeeCCCccc--cC-CCCCceEEEEEEe----CC-cccceecCCccc-CCCCCcccceEEEECCHHHh-CC--CE
Confidence 689999999999988 34 5899999998632 11 113467899875 68999999999999876332 21 46
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++++++||++.|++..
T Consensus 84 l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 84 LIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred EEEEEEECCCCCCCceeEEEEECCCC
Confidence 99999999998889999999999873
No 86
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=8.2e-16 Score=115.89 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=76.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|+|+|++|++|++.+ .+ +..||||++.+.+ +..+..+.+|++++ ++.||.|||+|.|. +.... .. ..
T Consensus 17 L~V~v~~a~~L~~~~--~~-~~~dpyv~v~~~~-----~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~-~~--~~ 84 (123)
T cd04035 17 LHCTIIRAKGLKAMD--AN-GLSDPYVKLNLLP-----GASKATKLRTKTVH-KTRNPEFNETLTYYGITEED-IQ--RK 84 (123)
T ss_pred EEEEEEEeeCCCCCC--CC-CCCCceEEEEEec-----CCCCCCceeeeeec-CCCCCCccceEEEcCCCHHH-hC--CC
Confidence 689999999999887 33 5899999998743 11123578999986 57999999999996 44311 11 14
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCC
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFP 110 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~ 110 (192)
.|.|+|||++.+ ++++||++.++|++|...
T Consensus 85 ~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 85 TLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 799999999887 899999999999999743
No 87
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.67 E-value=4.5e-16 Score=120.32 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=75.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+..+ + +.+||||+|.+.+ ++....+.||++.+ ++.||+|||+|.|.++..++ .. ..
T Consensus 17 L~V~V~~a~nL~~~~---~-~~~d~yVkv~l~~-----~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l-~~--~~ 83 (137)
T cd08409 17 LTVVVLRARGLRQLD---H-AHTSVYVKVSLMI-----HNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL-DT--AS 83 (137)
T ss_pred EEEEEEEecCCCccc---C-CCCCeEEEEEEEE-----CCEEeeeeecccEe-CCCCCcccceEEEECCHHHh-Cc--cE
Confidence 689999999999876 2 4799999998743 11112467999876 68999999999999986443 22 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|++.+.++++++||++.|+....
T Consensus 84 L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 84 LSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EEEEEEeCCCCCCcceEEEEEECCccc
Confidence 999999999888899999999997554
No 88
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.1e-15 Score=116.19 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=74.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|++.+ .+ +.+||||++.+ ++. ..+.||.+++ ++.||.|||+|.|.+... + ...
T Consensus 2 lrV~Vi~a~~L~~~d--~~-g~~DPYv~v~~------~~~--~~~~kT~~v~-~t~nP~Wne~f~f~~~~~---~--~~~ 64 (124)
T cd04037 2 VRVYVVRARNLQPKD--PN-GKSDPYLKIKL------GKK--KINDRDNYIP-NTLNPVFGKMFELEATLP---G--NSI 64 (124)
T ss_pred EEEEEEECcCCCCCC--CC-CCCCcEEEEEE------CCe--eccceeeEEE-CCCCCccceEEEEEecCC---C--CCE
Confidence 589999999999988 34 58999999976 221 2345787776 489999999999987541 1 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|++.+++|++||++.++|.+...
T Consensus 65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 65 LKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 99999999988899999999999998864
No 89
>PLN02270 phospholipase D alpha
Probab=99.66 E-value=1.6e-15 Score=144.53 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=102.6
Q ss_pred CEEEEEEeeCCCCCCC-CC-------------c-CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEE
Q 029535 1 MEITILSAQGLKNTSF-TL-------------F-SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFY 65 (192)
Q Consensus 1 LeVtVisAk~L~~~~~-~~-------------~-~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~ 65 (192)
|+|+|+.|++|++.+. +. + .+.+||||+|.+ + ++...||+++.+...||.|||.|+
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~------~---~a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL------E---KARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe------C---CcEEEEEeecCCCCCCCccccceE
Confidence 7999999999997420 00 1 135799999987 3 257899999976567999999999
Q ss_pred EEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE--EEEEEEEEeec
Q 029535 66 VPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG--VVNLAIKLEPV 143 (192)
Q Consensus 66 f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G--~l~l~v~f~~~ 143 (192)
+++.+. .+.+.|.|+|.+.+ +..+||.+.||+.+|++.. .-..||++.+.+|+..+| .||++++|.++
T Consensus 81 i~~ah~------~~~v~f~vkd~~~~-g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 81 IYCAHM------ASNIIFTVKDDNPI-GATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred EeeccC------cceEEEEEecCCcc-CceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999993 36899999999987 6679999999999997632 123489999988843333 99999999998
Q ss_pred CCCCC
Q 029535 144 VPDTS 148 (192)
Q Consensus 144 ~~~~~ 148 (192)
.+++.
T Consensus 151 ~~~~~ 155 (808)
T PLN02270 151 TKDRN 155 (808)
T ss_pred ccCcc
Confidence 87763
No 90
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.65 E-value=1.3e-15 Score=120.44 Aligned_cols=105 Identities=20% Similarity=0.423 Sum_probs=77.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCC-C------------------CCccEEEeEeecCCCCCCeec
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSG-D------------------KHCHVYRTRVDDHGGVNPTWG 61 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~-d------------------~~~~~~rT~v~~~~g~nP~WN 61 (192)
|.|+|++|++|.+.+ .. +.+||||.|.+..-..-.+ + ...+.++|+++. ++.||.||
T Consensus 30 L~V~vi~a~~L~~~d--~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~Wn 105 (153)
T cd08676 30 LKVTVIEAKGLLAKD--VN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPVWN 105 (153)
T ss_pred EEEEEEeccCCcccC--CC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCccc
Confidence 689999999999988 34 5899999997632100000 0 001357899886 58999999
Q ss_pred eEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEE
Q 029535 62 DKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRL 122 (192)
Q Consensus 62 E~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L 122 (192)
|+|.|.+... .. ..|.|+|||++ |++||.+.++++++... + ...||+|
T Consensus 106 E~F~f~v~~~---~~--~~L~i~V~D~d----d~~IG~v~i~l~~l~~~--~--~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDV---SN--DQLHLDIWDHD----DDFLGCVNIPLKDLPSC--G--LDSWFKL 153 (153)
T ss_pred cEEEEEeccC---CC--CEEEEEEEecC----CCeEEEEEEEHHHhCCC--C--CCCeEeC
Confidence 9999999651 12 47999999986 78999999999999732 2 2458875
No 91
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.3e-15 Score=136.13 Aligned_cols=127 Identities=17% Similarity=0.318 Sum_probs=100.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|+.|++|+.++ .++..||||++.+. +|+ ..+.+|++++ ++.||.|||+|.|.+...++ + ...
T Consensus 169 L~V~V~qa~~Lp~~d---~~g~sdpyVK~~ll------Pdk-~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l-~--~~~ 234 (421)
T KOG1028|consen 169 LTVRVIQAHDLPAKD---RGGTSDPYVKVYLL------PDK-KGKFKTRVHR-KTLNPVFNETFRFEVPYEEL-S--NRV 234 (421)
T ss_pred EEEEEEEecCCCccc---CCCCCCCeeEEEEc------CCC-CCcceeeeee-cCcCCccccceEeecCHHHh-c--cCE
Confidence 689999999999987 34689999999763 443 5789999997 58999999999999877332 2 358
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeC--CCCcccEEEEEEEEEeecC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRAR--DGSRGHGVVNLAIKLEPVV 144 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~--~G~k~~G~l~l~v~f~~~~ 144 (192)
|.+.|||.++|+++++||++.++|..+..... ...|+.+... ......|+|.+++.+.|..
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~---~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLST---TLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccccc---ceeeeccccccCCcccccceEEEEEEeecCC
Confidence 99999999999999999999999998853221 3457877763 1212348999999999963
No 92
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=2e-15 Score=114.56 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=83.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|+..+ .. +.+||||++.+.+. + ....+++|++.. ++.||.|||+|.|.+....+ +. ..
T Consensus 16 L~V~v~~a~~L~~~~--~~-~~~dpyv~v~l~~~----~-~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l-~~--~~ 83 (134)
T cd00276 16 LTVVVLKARNLPPSD--GK-GLSDPYVKVSLLQG----G-KKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQL-EE--VS 83 (134)
T ss_pred EEEEEEEeeCCCCcc--CC-CCCCcEEEEEEEcC----C-eEeeeecCccee-cCCCCeeeeeEEEECCHHHh-CC--cE
Confidence 689999999999887 23 57999999987431 1 113467999886 58999999999999977322 12 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.|+|+|.+.++++++||.+.++|.+. .. ....||+|....+
T Consensus 84 l~~~v~d~~~~~~~~~lG~~~i~l~~~--~~---~~~~W~~l~~~~~ 125 (134)
T cd00276 84 LVITVVDKDSVGRNEVIGQVVLGPDSG--GE---ELEHWNEMLASPR 125 (134)
T ss_pred EEEEEEecCCCCCCceeEEEEECCCCC--Cc---HHHHHHHHHhCCC
Confidence 999999998877899999999999992 11 1234788776433
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.63 E-value=3.6e-15 Score=112.15 Aligned_cols=105 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred EEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEE
Q 029535 4 TILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYL 83 (192)
Q Consensus 4 tVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~v 83 (192)
-.|+|++|++.+ .+ +.+||||+|.+.+... ......++|++++ ++.||+|||+|.|.+..+. ...|.|
T Consensus 5 ~~i~a~~L~~~d--~~-g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~-----~~~l~~ 72 (120)
T cd04048 5 LSISCRNLLDKD--VL-SKSDPFVVVYVKTGGS---GQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE-----VQKLRF 72 (120)
T ss_pred EEEEccCCCCCC--CC-CCCCcEEEEEEEcCCC---CceEEeccEeEeC-CCCCCCceEEEEEEEEeEe-----eeEEEE
Confidence 358999999988 44 5899999998743210 0112468999997 5899999999999865411 257999
Q ss_pred EEEEccC----CCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 84 QLYTKTL----ISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 84 eV~d~~~----~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
+|||++. ++++++||++.+++.+|.... -...+|+|.
T Consensus 73 ~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 73 EVYDVDSKSKDLSDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred EEEEecCCcCCCCCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 9999986 788999999999999997543 234578873
No 94
>PLN02223 phosphoinositide phospholipase C
Probab=99.62 E-value=5.7e-15 Score=135.83 Aligned_cols=122 Identities=19% Similarity=0.296 Sum_probs=89.6
Q ss_pred CEEEEEEeeCCC-CCCCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCce
Q 029535 1 MEITILSAQGLK-NTSFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~-~~~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~ 78 (192)
|.|+||+|++|. +.+... -....||||+|+++|+. .| ..+.+|++. +||.||+|||+|.|.+...+ .
T Consensus 411 L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp---~D--~~~~kT~v~-nNg~nPvWne~F~F~i~~PE-----L 479 (537)
T PLN02223 411 LKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVP---HD--EKIMKTTVK-NNEWKPTWGEEFTFPLTYPD-----L 479 (537)
T ss_pred EEEEEEEcccccCCcccccCCCCCCCeEEEEEEeecc---CC--cceeEEEeC-CCCcCceecceeEEEEEccC-----c
Confidence 679999999985 211000 01368999999999863 33 246678754 67999999999999987643 3
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEE
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f 140 (192)
+.|+|+|+|++..++|++||.+.+|+..|.... .+.+|++++|.+..+ ..|-++|
T Consensus 480 AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy------R~VpL~~~~g~~l~~-~~Ll~~f 534 (537)
T PLN02223 480 ALISFEVYDYEVSTADAFCGQTCLPVSELIEGI------RAVPLYDERGKACSS-TMLLTRF 534 (537)
T ss_pred eEEEEEEEecCCCCCCcEEEEEecchHHhcCCc------eeEeccCCCcCCCCC-ceEEEEE
Confidence 799999999998778999999999999997433 257899888844233 3444443
No 95
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.61 E-value=3.5e-15 Score=140.16 Aligned_cols=126 Identities=22% Similarity=0.357 Sum_probs=99.7
Q ss_pred CEEEEEEeeCC-CCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGL-KNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L-~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|+|+|++++ ++.+.+.|+...||||.|++.|+ ..| +.+.+|+++.+||.||.|+|+|+|.+...+ .+
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gv---p~D--~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE-----LA 687 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGV---PAD--CAEQKTKVVKNNGFNPIWDEEFEFQLSVPE-----LA 687 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEccc---ccc--hhhhhceeeccCCcCcccCCeEEEEEeccc-----ee
Confidence 68999999955 45554456678999999999886 344 578899988889999999999999998743 47
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEee
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEP 142 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~ 142 (192)
.|+|+|.|++..++|+++|..++|+..|..... ..+|.+..|.. ..-.|-+.+++.+
T Consensus 688 liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR------hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 688 LIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR------HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEEEEEecCCCCcccccceeeccHHHhhCcee------eeeecCCCCccccceeEEEEEEEec
Confidence 999999999998889999999999999975432 47888877743 3445666665543
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.60 E-value=8.9e-15 Score=101.23 Aligned_cols=85 Identities=24% Similarity=0.518 Sum_probs=68.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|++|++|...+ . .+..||||++.+ ++.. ..+++|++..+ +.+|.|||+|.|.+.... ...
T Consensus 1 L~v~I~~a~~L~~~~--~-~~~~~~yv~v~~------~~~~-~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-----~~~ 64 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD--S-NGKPDPYVRVSV------NGSE-STKYKTKVKKN-TSNPVWNEEFEFPLDDPD-----LDS 64 (85)
T ss_dssp EEEEEEEEESSSSSS--T-TSSBEEEEEEEE------ETTT-CEEEEECCBSS-BSSEEEEEEEEEEESHGC-----GTE
T ss_pred CEEEEEEEECCCCcc--c-CCcccccceeec------ceee-eeeeeeeeeec-cccceeeeeeeeeeeccc-----ccc
Confidence 789999999999876 2 248999999987 2221 24689999874 699999999999976632 235
Q ss_pred EEEEEEEccCCCCCeeeEEEE
Q 029535 81 IYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~ 101 (192)
|.|+|||++.+++|++||+++
T Consensus 65 l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 65 LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEEETSSSSEEEEEEEE
T ss_pred eEEEEEECCCCCCCCEEEEEC
Confidence 999999999988899999985
No 97
>PLN02952 phosphoinositide phospholipase C
Probab=99.59 E-value=1.3e-14 Score=135.39 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=93.6
Q ss_pred CEEEEEEeeCCCCCCC-CCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSF-TLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~-~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+||||++|+.... +.++ ...||||+|.++|+. .| ..+.+|+++.+ +.||+|||+|.|.+...+
T Consensus 472 L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p---~D--~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE----- 540 (599)
T PLN02952 472 LKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVP---AD--NAKKKTKIIED-NWYPAWNEEFSFPLTVPE----- 540 (599)
T ss_pred EEEEEEECcccCCCCccccCCccCCCCceEEEEEeccC---CC--CcceeeeeccC-CCCcccCCeeEEEEEcCC-----
Confidence 6799999999853210 0111 246999999999863 33 36779999976 499999999999877632
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEe
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLE 141 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~ 141 (192)
.+.|+|+|+|++..++|++||++.+||..|.... .+.+|++.+| +..+.++|-++|.
T Consensus 541 LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy------R~VpL~~~~G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 541 LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI------RSVPLHDKKG-EKLKNVRLLMRFI 597 (599)
T ss_pred ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc------eeEeCcCCCC-CCCCCEEEEEEEE
Confidence 3789999999988778999999999999997432 2789988888 5555666666653
No 98
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=4.4e-14 Score=104.35 Aligned_cols=96 Identities=21% Similarity=0.369 Sum_probs=72.5
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc-eeEE
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR-YACI 81 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~-~~~L 81 (192)
+-.++|++|+..+ .+ +.+||||+|.+.+ .......+++|++++ ++.||+|| +|.|++.. +...+ ...|
T Consensus 4 ~~~i~a~~L~~~d--~~-~~~DPyv~v~~~~----~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~--l~~~~~~~~l 72 (110)
T cd04047 4 ELQFSGKKLDKKD--FF-GKSDPFLEISRQS----EDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQK--LCNGDYDRPI 72 (110)
T ss_pred EEEEEeCCCCCCC--CC-CCCCeeEEEEEEC----CCCCEEEEEeeeEec-cCCCCceE-EEEEEHHH--hcCCCcCCEE
Confidence 4568999999988 45 4899999997632 100113568999997 47999999 78887643 11111 2589
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|+|||++.+++|++||.+.+++.+|..
T Consensus 73 ~~~V~d~d~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 73 KIEVYDYDSSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred EEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence 9999999998899999999999999973
No 99
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.55 E-value=1.4e-14 Score=148.60 Aligned_cols=117 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|+||+ .+ | +.+||||++.+ +. ..+.||++++ ++.||+|||.|+|.+++.+. ...
T Consensus 1982 L~V~V~~a~nl~-~~---~-~~sdPyv~l~~------g~---~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~----~~~ 2042 (2102)
T PLN03200 1982 LTVTIKRGNNLK-QS---M-GNTNAFCKLTL------GN---GPPRQTKVVS-HSSSPEWKEGFTWAFDSPPK----GQK 2042 (2102)
T ss_pred eEEEEeeccccc-cc---c-CCCCCeEEEEE------CC---CCcccccccC-CCCCCCcccceeeeecCCCC----CCc
Confidence 689999999999 32 4 48999999976 31 2367999997 58999999999998887431 246
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEE---EEEEEEEee
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGV---VNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~---l~l~v~f~~ 142 (192)
|+|+|||++.| +++.||.+.|++.++.... ....||+|.+ +| +..|. |++.++|.+
T Consensus 2043 l~iev~d~d~f-~kd~~G~~~i~l~~vv~~~---~~~~~~~L~~-~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2043 LHISCKSKNTF-GKSSLGKVTIQIDRVVMEG---TYSGEYSLNP-ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eEEEEEecCcc-CCCCCceEEEEHHHHhcCc---eeeeeeecCc-cc-ccCCCcceEEEEEEecC
Confidence 99999999998 4559999999999997532 2345899974 34 45777 999998865
No 100
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.55 E-value=4.3e-14 Score=131.91 Aligned_cols=123 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred CEEEEEEeeCCCCCC-CCCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTS-FTLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~-~~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
|.|+|++++++.... ...+. ...||||+|++||+ ..| ..+.+|++. ++|.||+|||+|.|++...+
T Consensus 471 L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gv---p~D--~~~~kT~v~-~n~~nP~Wneef~F~l~vPE----- 539 (598)
T PLN02230 471 LKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGA---PVD--EVMEKTKIE-YDTWTPIWNKEFIFPLAVPE----- 539 (598)
T ss_pred EEEEEEEccCccCCCccccCCCCCCCCceEEEEEEEC---CCC--Ccccceecc-CCCCCCccCCeeEEEEEcCc-----
Confidence 679999999874221 00111 25799999999995 233 256789966 56899999999999877633
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIKL 140 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~f 140 (192)
.+.|+|+|+|++...+|++||++.||+..|..... ..+|++++|.+..+ .|-+.++|
T Consensus 540 LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR------~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 540 LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH------AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc------eEeccCCCcCCCCCCeeEEEEEe
Confidence 47999999999887789999999999999975331 57888888854333 34444433
No 101
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.53 E-value=1.2e-13 Score=128.68 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=89.9
Q ss_pred CEEEEEEeeCCC--CCCCCCcC--CCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccC
Q 029535 1 MEITILSAQGLK--NTSFTLFS--SRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN 76 (192)
Q Consensus 1 LeVtVisAk~L~--~~~~~~~~--~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~ 76 (192)
|.|+|++|+++. ..+. .+. ...||||+|.++|+ ..| ..+.+|+++.+| .||+|||+|.|.+...+
T Consensus 454 L~V~Visgq~~~l~~~~~-~~~~~~~~dpyV~Vei~G~---p~D--~~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe---- 522 (581)
T PLN02222 454 LRVTIYMGEGWYFDFRHT-HFDQYSPPDFYTRVGIAGV---PGD--TVMKKTKTLEDN-WIPAWDEVFEFPLTVPE---- 522 (581)
T ss_pred EEEEEEEcccccCCCCcc-ccCCCCCCCeeEEEEEecc---CCC--cceeeeEecCCC-CCcccCCeeEEEEEcCc----
Confidence 579999999853 2211 111 36799999999986 334 367899999865 89999999999876633
Q ss_pred ceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEE
Q 029535 77 RYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIK 139 (192)
Q Consensus 77 ~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~ 139 (192)
.+.|+|+|+|++..++|++||++.||+..|...-. ..+|++.+|....+ .|-+.+.
T Consensus 523 -LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR------~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 523 -LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR------AFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred -eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc------eEEccCCCcCCCCCeeEEEEEE
Confidence 47999999999887789999999999999975321 57888888854344 4444443
No 102
>PLN02228 Phosphoinositide phospholipase C
Probab=99.51 E-value=2.2e-13 Score=126.59 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=94.5
Q ss_pred CEEEEEEeeCCCCC--CCCC-cCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCee-ceEEEEEcccCccccC
Q 029535 1 MEITILSAQGLKNT--SFTL-FSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTW-GDKFYVPTDCNAFFAN 76 (192)
Q Consensus 1 LeVtVisAk~L~~~--~~~~-~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~W-NE~f~f~v~~~~l~~~ 76 (192)
|.|+||||++|... ..+. -....||||+|+++|+. .| ..+++|+++.+ |.||+| ||+|.|.+...+
T Consensus 433 L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p---~D--~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pE---- 502 (567)
T PLN02228 433 LKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVP---RD--TVSYRTETAVD-QWFPIWGNDEFLFQLRVPE---- 502 (567)
T ss_pred EEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecC---CC--CCcceeeccCC-CCCceECCCeEEEEEEcCc----
Confidence 68999999998321 1000 01258999999999852 33 35689999865 689999 999999976633
Q ss_pred ceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcc-cEEEEEEEEEeec
Q 029535 77 RYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRG-HGVVNLAIKLEPV 143 (192)
Q Consensus 77 ~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~-~G~l~l~v~f~~~ 143 (192)
.+.|+|+|+|++..++|++||++.|||..|...- ...+|++.+|... ...|-+.+.+.+.
T Consensus 503 -LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY------R~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 503 -LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV------RAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred -eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe------eEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 4799999999987778999999999999996422 2578888888553 4467777777664
No 103
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=9.1e-15 Score=130.93 Aligned_cols=107 Identities=17% Similarity=0.288 Sum_probs=85.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|..|++|-+++. .|-+||||.+.+.+ ++ +...++||++++ .+.||+|||+|+|.+.... ....
T Consensus 182 l~v~i~ea~NLiPMDp---NGlSDPYvk~kliP----D~-~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D----kdrR 248 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPMDP---NGLSDPYVKLKLIP----DP-KNESKQKTKTIK-ATLNPVWNETFTFKLKPSD----KDRR 248 (683)
T ss_pred EEEEehhhccccccCC---CCCCCcceeEEecc----CC-cchhhhhhhhhh-hhcCccccceeEEeccccc----ccce
Confidence 6899999999999984 36899999999843 21 235788999997 5899999999999997732 2257
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
|.|||||++..++++++|...+-+++|...+-. -||.|+.
T Consensus 249 lsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~----GWyKlLs 288 (683)
T KOG0696|consen 249 LSIEVWDWDRTSRNDFMGSLSFGISELQKAPVD----GWYKLLS 288 (683)
T ss_pred eEEEEecccccccccccceecccHHHHhhcchh----hHHHHhh
Confidence 999999999989999999999999999653321 2777764
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.45 E-value=4.4e-13 Score=130.50 Aligned_cols=124 Identities=25% Similarity=0.478 Sum_probs=100.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|.+|++|+..+. .+.+..|||+++... | ....||++.+ +..||+|||+|.+.+.. + ...
T Consensus 438 v~vkI~sa~~lk~~d~-~i~~~vDpyit~~~~-------~--r~~gkT~v~~-nt~nPvwNEt~Yi~lns--~----~d~ 500 (1227)
T COG5038 438 VEVKIKSAEGLKKSDS-TINGTVDPYITVTFS-------D--RVIGKTRVKK-NTLNPVWNETFYILLNS--F----TDP 500 (1227)
T ss_pred EEEEEeeccCcccccc-cccCCCCceEEEEec-------c--ccCCccceee-ccCCccccceEEEEecc--c----CCc
Confidence 5899999999999884 567799999999852 1 2456999887 58999999999999875 2 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~ 145 (192)
|.++|||.+++..|+.+|.+.++|..|.+.+ .....-|++++ ++ +..|.|++.++|.|...
T Consensus 501 L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~--~~~ne~~e~~~-~~-k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNP--VKKNELYEFLR-NT-KNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeEEEEeccccCCcceeeeEEechHHhhhcc--ccccceeeeec-cC-ccceEEEEeeeeecccC
Confidence 9999999888889999999999999997543 22333577764 34 89999999999999753
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.38 E-value=7.5e-12 Score=87.90 Aligned_cols=93 Identities=22% Similarity=0.415 Sum_probs=74.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+|++|++|.... .+ +..+|||.+.+.+ .. .+..+|++..+ ..||.|||+|.|.+.... ...
T Consensus 2 l~i~i~~~~~l~~~~--~~-~~~~~yv~v~~~~------~~-~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~-----~~~ 65 (101)
T smart00239 2 LTVKIISARNLPKKD--KK-GKSDPYVKVSLDG------DP-KEKKKTKVVKN-TLNPVWNETFEFEVPPPE-----LAE 65 (101)
T ss_pred eEEEEEEeeCCCCCC--CC-CCCCceEEEEEeC------Cc-cceEeeeEecC-CCCCcccceEEEEecCcc-----cCE
Confidence 579999999999876 22 4789999998732 10 24789998874 569999999999997721 258
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
|.|+|+|.....++.+||.+.+++.++..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHccc
Confidence 99999999876678999999999999864
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.37 E-value=9.3e-12 Score=86.63 Aligned_cols=90 Identities=21% Similarity=0.461 Sum_probs=73.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|++|++|.... . ....+|||++.+.. ...++|++.. +..||.|||.|.|.+... . ...
T Consensus 1 l~v~i~~~~~l~~~~--~-~~~~~~~v~v~~~~---------~~~~~T~~~~-~~~~P~w~~~~~~~~~~~---~--~~~ 62 (102)
T cd00030 1 LRVTVIEARNLPAKD--L-NGKSDPYVKVSLGG---------KQKFKTKVVK-NTLNPVWNETFEFPVLDP---E--SDT 62 (102)
T ss_pred CEEEEEeeeCCCCcC--C-CCCCCcEEEEEecc---------CceEecceeC-CCCCCcccceEEEEccCC---C--CCE
Confidence 689999999998764 1 24799999998632 2568899886 468999999999998761 1 247
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
|.|+|++.+....+++||.+.+++.++.
T Consensus 63 l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 63 LTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 9999999988767899999999999987
No 107
>PLN02352 phospholipase D epsilon
Probab=99.36 E-value=5.3e-12 Score=120.22 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCCCCC--CCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCce
Q 029535 1 MEITILSAQGLKNTSF--TLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~--~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~ 78 (192)
|++||..|+-+...-. ..++...||||+|.+ + ++...|| . +..||.|||.|.+++.+. .
T Consensus 12 l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~------~---~~~v~rt---~-~~~~p~w~e~f~i~~ah~------~ 72 (758)
T PLN02352 12 LEATIFDATPYTPPFPFNCIFLNGKATYVTIKI------G---NKKVAKT---S-HEYDRVWNQTFQILCAHP------L 72 (758)
T ss_pred eEEEEEEeeehhhcccccccccCCCCceEEEEe------C---CcEEecC---C-CCCCCccccceeEEeeee------c
Confidence 7899999984433210 012223399999987 3 2567888 2 456999999999999982 2
Q ss_pred -eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE-EEEEEEEEeecCCCC
Q 029535 79 -ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG-VVNLAIKLEPVVPDT 147 (192)
Q Consensus 79 -~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G-~l~l~v~f~~~~~~~ 147 (192)
+.+.|.|+| +..+||.+.||+.+|+...+ .-.-||++.+.+|+..+| .|+++++|.++.++|
T Consensus 73 ~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 73 DSTITITLKT-----KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred CCcEEEEEec-----CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence 479999999 47899999999999986421 134599999988855556 999999999998876
No 108
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.35 E-value=3e-12 Score=95.22 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=71.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|+|.+|+||.......|++++||||.+.+ + | ..+.||++. .||+|||.|.|+++. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv------e-d--~~kaRTr~s----rnd~WnE~F~i~Vdk-------~nE 60 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV------E-D--VERARTKPS----RNDRWNEDFEIPVEK-------NNE 60 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE------C-C--EEEEeccCC----CCCcccceEEEEecC-------CcE
Confidence 7899999999998764236678999999986 3 2 468899863 799999999999965 147
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
+.|.|||... ...-+||..-|+++||..
T Consensus 61 iel~VyDk~~-~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 61 EEVIVYDKGG-DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEEEEEeCCC-CeecceeeehhhHHHHHH
Confidence 9999999853 244689999999999963
No 109
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.33 E-value=6.2e-12 Score=117.50 Aligned_cols=140 Identities=20% Similarity=0.337 Sum_probs=111.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|..|++|+..+ .+|..||||+|.+ + +....||.++- .+.-|.|.|.|+|.++- .| ..
T Consensus 7 l~vki~E~knL~~~~---~~g~~D~yC~v~l------D---~E~v~RT~tv~-ksL~PF~gEe~~~~iP~-~F-----~~ 67 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYG---PSGMRDCYCTVNL------D---QEEVCRTATVE-KSLCPFFGEEFYFEIPR-TF-----RY 67 (800)
T ss_pred eeEEEeecccCCCCC---CCCCcCcceEEee------c---chhhhhhhhhh-hhcCCccccceEEecCc-ce-----ee
Confidence 679999999999887 3578999999976 3 24678999986 58999999999999987 33 58
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCCCCCCcc---eecce
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDTSLDAC---HVIGI 157 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~~~~~~~---~~~~~ 157 (192)
|.|-|||++ ++.|++||++.|.=.+|..-+ +...|.+++-.+++. ..+|+|||.+++.++-++....|. .-.+.
T Consensus 68 l~fYv~D~d-~~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~ 144 (800)
T KOG2059|consen 68 LSFYVWDRD-LKRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSSGLVCHVLKTRQGL 144 (800)
T ss_pred EEEEEeccc-cccccccceeeeeHHHHhhCC-CCccceeccccCCCh-hhceeEEEEEEeccccCCCcchhhhhhhcccC
Confidence 999999999 889999999999999997644 444555555556776 799999999999998876655441 12466
Q ss_pred eeccC
Q 029535 158 PLICQ 162 (192)
Q Consensus 158 p~~~~ 162 (192)
|..-.
T Consensus 145 P~~~~ 149 (800)
T KOG2059|consen 145 PIING 149 (800)
T ss_pred ceeCC
Confidence 65543
No 110
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.27 E-value=3.5e-11 Score=93.19 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCC--CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCC--CeeceEEEEEcccCccc--
Q 029535 1 MEITILSAQGLKNTSFTLFSS--RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVN--PTWGDKFYVPTDCNAFF-- 74 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~--~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~n--P~WNE~f~f~v~~~~l~-- 74 (192)
|+|.|..|+++...+.. +.| .+||||++.+.+ + ...+++|.|+. +..| |.||+.|.|++...+..
T Consensus 2 LRViIw~~~~v~~~~~~-~~g~~~sD~yVK~~L~~------~-~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~ 72 (133)
T cd08374 2 LRVIVWNTRDVLNDDTN-ITGEKMSDIYVKGWLDG------L-EEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKK 72 (133)
T ss_pred EEEEEEECcCCcccccc-cCCccccCeEEEEEEcc------C-cccccccceEE-ecCCCCcEEeEEEEEeeecCCccce
Confidence 68999999997655421 233 589999998744 2 13578999987 4788 99999999987651100
Q ss_pred ----------------cCceeEEEEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 75 ----------------ANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 75 ----------------~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
......|.++|||.+.++.|++||.+.++|..+..
T Consensus 73 ~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 73 IVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred eEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 01125899999999999999999999999998854
No 111
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.1e-12 Score=117.60 Aligned_cols=118 Identities=24% Similarity=0.416 Sum_probs=88.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.+||+.|++|...++ .|++||||++++ + ..+.||+++. +..||+|||+|+|.+.++ ...
T Consensus 297 itltvlcaqgl~akdk---tg~sdpyvt~qv------~----ktkrrtrti~-~~lnpvw~ekfhfechns------tdr 356 (1283)
T KOG1011|consen 297 ITLTVLCAQGLIAKDK---TGKSDPYVTAQV------G----KTKRRTRTIH-QELNPVWNEKFHFECHNS------TDR 356 (1283)
T ss_pred eEEeeeecccceeccc---CCCCCCcEEEee------c----ccchhhHhhh-hccchhhhhheeeeecCC------Cce
Confidence 4689999999998873 368999999986 2 4688999986 689999999999999883 247
Q ss_pred EEEEEEEccCC-----------CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEE--EEEEEEEeec
Q 029535 81 IYLQLYTKTLI-----------SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGV--VNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~-----------~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~--l~l~v~f~~~ 143 (192)
+.+.|||++.- .+|+++|...|-+..|- +++ .+||.|..+.. ....|. ||+++.+.+.
T Consensus 357 ikvrvwded~dlksklrqkl~resddflgqtvievrtls----gem-dvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 357 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS----GEM-DVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred eEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc----cch-hhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 89999997521 25899999999998884 122 35999876422 235664 4555555543
No 112
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.22 E-value=5.7e-11 Score=112.66 Aligned_cols=123 Identities=22% Similarity=0.365 Sum_probs=90.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeec-eEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWG-DKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WN-E~f~f~v~~~~l~~~~~~ 79 (192)
|.|.||.|+.|++.. .+...|||+|++.|.- .+ ..+++|.++.+||+||+|| |+|+|.+.+.+ .+
T Consensus 1067 lsv~vigaRHL~k~g----r~i~cPfVevEiiGa~-~D----t~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-----~A 1132 (1267)
T KOG1264|consen 1067 LSVKVLGARHLPKLG----RSIACPFVEVEIIGAE-YD----TNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-----FA 1132 (1267)
T ss_pred EEEEEeeccccccCC----CCccCCcEEEEEeccc-cC----CCceEEEEeccCCCCCCCCCcceEEEeeCCc-----eE
Confidence 578999999999654 2467899999997742 22 2467777777889999999 99999998854 48
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEeec
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEPV 143 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~~ 143 (192)
.|+|.|++++.|+...+||.|..|+..|.... .+.+|.+.-+.. .-..|-+.+.+-++
T Consensus 1133 ~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf------RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1133 FLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF------RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred EEEEEEecccccCCcceeeeeecchhhhhccc------eeeecccCchhhhhhhhheeeeEeccc
Confidence 99999999999988889999999999996532 256765432211 12234455555554
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.7e-11 Score=107.63 Aligned_cols=94 Identities=20% Similarity=0.428 Sum_probs=76.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|.|+.|++|+..+ .++..||||++.++ .++++..+.||.+.+ +..||+|||+|.|.++.+.+ + ...
T Consensus 300 ltv~v~kar~L~~~~---~~~~~d~~Vk~~l~-----~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l-~--~~~ 367 (421)
T KOG1028|consen 300 LTVVVIKARNLKSMD---VGGLSDPYVKVTLL-----DGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQL-A--EVS 367 (421)
T ss_pred EEEEEEEecCCCccc---CCCCCCccEEEEEe-----cCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHh-h--eeE
Confidence 679999999999987 24678999999874 233446788999876 58999999999999987443 2 268
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~ 106 (192)
|.|+|+|++.++.+++||.+.+-...
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCC
Confidence 99999999999999999988877664
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.09 E-value=3.3e-10 Score=110.78 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=91.4
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|.+++|+||+..+. .+..||||.+.+ .+ ...++|++++. ++||+|||.|.+++.+. .. ..
T Consensus 1042 l~I~~~~~~nl~~~d~---ng~sDpfv~~~l------n~---k~vyktkv~Kk-tlNPvwNEe~~i~v~~r---~~--D~ 1103 (1227)
T COG5038 1042 LTIMLRSGENLPSSDE---NGYSDPFVKLFL------NE---KSVYKTKVVKK-TLNPVWNEEFTIEVLNR---VK--DV 1103 (1227)
T ss_pred EEEEEeccCCCccccc---CCCCCceEEEEe------cc---eecccccchhc-cCCCCccccceEeeecc---cc--ce
Confidence 6899999999999982 457999998865 33 24789999975 89999999999999873 22 48
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
|.+.|+|++...+++.||.+.++|..|..+.+ .....+|-.+.-....|.+|....|-+.
T Consensus 1104 ~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~---~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1104 LTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT---TNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred EEEEEeecccCCCccccccccccHhhcCcCCc---cceeeeccCcceEecccEeecceecchh
Confidence 99999999998889999999999999964321 1123333222101356777777777664
No 115
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=5.8e-09 Score=97.59 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=88.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
.|.|+.|.||+.... |..+|||+|.+.|+-. +| +++++.|+... |+.-|.+||+|+|.+..++ ..+.-.|
T Consensus 1128 tvkvvaandlkwqts----gmFrPFVEV~ivGP~l--sD-KKRK~~TKtKs-nnWaPKyNEtF~f~Lg~e~--~Pe~YEL 1197 (1283)
T KOG1011|consen 1128 TVKVVAANDLKWQTS----GMFRPFVEVHIVGPHL--SD-KKRKFSTKTKS-NNWAPKYNETFHFFLGNEG--GPEHYEL 1197 (1283)
T ss_pred EEEEEecccccchhc----cccccceEEEEecCcc--cc-hhhhccccccC-CCcCcccCceeEEEeccCC--CCceEEE
Confidence 689999999998862 5779999999988643 34 36889999775 6899999999999998843 2234589
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA 124 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~ 124 (192)
.|.|+|+.....|+.+|.+.++|.++.... + .-.|++|-+
T Consensus 1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kG--S-~a~W~pLgr 1237 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKG--S-CACWVPLGR 1237 (1283)
T ss_pred EEeehhheeecccceeeeeeeehhhHhhcC--c-eeEeeeccc
Confidence 999999998888999999999999997542 2 345899854
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.86 E-value=8e-09 Score=95.74 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=97.6
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceE-EEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDK-FYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~-f~f~v~~~~l~~~~~~ 79 (192)
|.|+|..|+.|+-++. -+...|.||++.+ . ...+||-|-. ...||.||.. |+|.+++.++ ++ +
T Consensus 5 l~vki~a~r~lpvmdk--asd~tdafveik~------~----n~t~ktdvf~-kslnp~wnsdwfkfevddadl-qd--e 68 (1169)
T KOG1031|consen 5 LGVKIKAARHLPVMDK--ASDLTDAFVEIKF------A----NTTFKTDVFL-KSLNPQWNSDWFKFEVDDADL-QD--E 68 (1169)
T ss_pred ceeEEEeccCCccccc--ccccchheeEEEe------c----ccceehhhhh-hhcCCcccccceEEecChhhh-cc--C
Confidence 5689999999999983 2347899999975 2 2578999876 4899999975 9999998654 33 5
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCC-------CCCcceeEEEEEEeC-CCCcccEEEEEEEEEe
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFP-------PGGSVRNLSYRLRAR-DGSRGHGVVNLAIKLE 141 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~-------~~~~~~~~~y~L~~~-~G~k~~G~l~l~v~f~ 141 (192)
.|++.+.|++..+.++-||++.|.+..|.-. ..+..-.-|+++.+. .| .+|+||+-|+..
T Consensus 69 plqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg--irgeinvivkvd 136 (1169)
T KOG1031|consen 69 PLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG--IRGEINVIVKVD 136 (1169)
T ss_pred CeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc--ccceeEEEEEEe
Confidence 8999999999999999999999999988421 223455679999974 34 789999998854
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.60 E-value=3.4e-08 Score=93.29 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=79.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|-|.|+.|+++-+-|. .|-+||||.|++.+..... ....++|+|++ .+.||+++|+|.|.++.++. ..+++.
T Consensus 949 L~veVlhA~diipLD~---NGlSDPFVviEl~P~~~fp---~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c-~te~Am 1020 (1103)
T KOG1328|consen 949 LVVEVLHAKDIIPLDS---NGLSDPFVVIELIPKFRFP---AVPVQKTKVVS-RTLNPVFDETFEFSVPPEPC-STETAM 1020 (1103)
T ss_pred hhhhhhccccccccCC---CCCCCCeEEEEeccccccc---cchhhhhhhhh-ccccchhhhheeeecCcccc-ccccce
Confidence 4578999999988873 3689999999974422111 14567999987 58999999999999987443 223589
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
|.|+|+|.+-++.+++-|++.+-|.++
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCC
Confidence 999999999998999999999999998
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.54 E-value=2.4e-07 Score=89.13 Aligned_cols=105 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceE-EEEE--cccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDK-FYVP--TDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~-f~f~--v~~~~l~~~~ 77 (192)
|+|+|||++=|.+.+ ..-||+|++||+. .|.....+||++..+|+.||+|||. |.|. +-. +
T Consensus 705 ~sV~VISgqFLSdrk-------vgtyVEVdmfgLP---~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp------e 768 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRK-------VGTYVEVDMFGLP---TDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP------E 768 (1189)
T ss_pred EEEEEEeeeeccccc-------cCceEEEEecCCC---chhhhhhhhhccccCCCCCcccccCCcccceeccc------c
Confidence 579999999999865 3479999999963 3333457899999999999999984 7774 222 1
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHG 132 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G 132 (192)
.+.|+|.||++ +.++||.-.+|+..|... .+ -..|+.+.+ ++-+
T Consensus 769 LA~lRiavyeE----ggK~ig~RIlpvd~l~~G----Yr--hv~LRse~N-qpl~ 812 (1189)
T KOG1265|consen 769 LASLRIAVYEE----GGKFIGQRILPVDGLNAG----YR--HVCLRSESN-QPLT 812 (1189)
T ss_pred hhheeeeeecc----CCceeeeeccchhcccCc----ce--eEEecCCCC-Cccc
Confidence 37999999997 468999999999998642 12 244555554 4444
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.40 E-value=1.1e-07 Score=89.95 Aligned_cols=131 Identities=22% Similarity=0.337 Sum_probs=87.0
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCC--------------------C-CCccEEEeEeecCCCCCCeec
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSG--------------------D-KHCHVYRTRVDDHGGVNPTWG 61 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~--------------------d-~~~~~~rT~v~~~~g~nP~WN 61 (192)
|.+..|+||-+++. .|.+|||+.+.+.....-.. - .-+-.+.|.|++ .+.||.|+
T Consensus 118 is~~~ak~l~akd~---ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~ 193 (1103)
T KOG1328|consen 118 ISLLEAKDLIAKDV---NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWS 193 (1103)
T ss_pred HHHHHhcCccccCC---CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchh
Confidence 34567888887762 35789999766533110000 0 001123577665 58999999
Q ss_pred eEEEEEcccCccccCceeEEEEEEEEccC---------------------------------CCC---CeeeEEEEEeCc
Q 029535 62 DKFYVPTDCNAFFANRYACIYLQLYTKTL---------------------------------ISG---QTLLGWCQIPVN 105 (192)
Q Consensus 62 E~f~f~v~~~~l~~~~~~~L~veV~d~~~---------------------------------~~~---d~~IG~~~IpL~ 105 (192)
|+|.|.+++- + ...+++.|||.+. -+. |+++|-+.|||+
T Consensus 194 EkF~F~IeDv---~--tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 194 EKFQFTIEDV---Q--TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hheeeehhcc---c--cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 9999999882 2 3589999998641 012 789999999999
Q ss_pred cccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEeecCCC
Q 029535 106 DIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEPVVPD 146 (192)
Q Consensus 106 ~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~~~~~ 146 (192)
++-. .|-.+ ||.|.-++. .+.+|.++|.+|+......
T Consensus 269 EiP~--~Gld~--WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 269 EIPP--DGLDQ--WFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred cCCc--chHHH--HhccCcccccccccceEEEEEEEeeeccc
Confidence 9953 33323 666654332 3799999999999886533
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.23 E-value=3.2e-06 Score=79.85 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=82.4
Q ss_pred EEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCc---------cc-
Q 029535 5 ILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNA---------FF- 74 (192)
Q Consensus 5 VisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~---------l~- 74 (192)
+++++++-+- +++.+|||++|...+ +. +....+|++.+ .+.||.|||.|.|.+.... ..
T Consensus 137 ~L~~r~~~P~----~~~~~dp~~~v~~~g-----~~-~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 137 VLKTRQGLPI----INGQCDPFARVTLCG-----PS-KLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred hhhhcccCce----eCCCCCcceEEeecc-----cc-hhhccccceee-eccCcchhhheeeeeccccccccchhcCccc
Confidence 4455555443 235699999997643 22 12346899887 4899999999999887620 00
Q ss_pred cCceeEEEEEEEE-ccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEe-CCCC-----cccEEEEEEEEEeec
Q 029535 75 ANRYACIYLQLYT-KTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRA-RDGS-----RGHGVVNLAIKLEPV 143 (192)
Q Consensus 75 ~~~~~~L~veV~d-~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~-~~G~-----k~~G~l~l~v~f~~~ 143 (192)
+.+...|++++|+ .+.+.++.++|++++|+..+.... -...||-|+- ++|. ---|.+.+.+.+...
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s---~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKS---SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhcc---CccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 0112578999998 455556899999999999886321 1223888774 3331 235778888888775
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.96 E-value=6.9e-06 Score=81.26 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=78.8
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-cccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-TDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v~~~~l~~~~~~ 79 (192)
|.|-|..|++|.-... |...||||+.-+.+ ++. +..|.||+|.+ ++.||++||.+... ++- +.+++ .
T Consensus 1526 LtImV~H~K~L~~Lqd---g~~P~pyVK~YLlP----dp~-k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~-~~l~q--R 1593 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQD---GQDPDPYVKTYLLP----DPR-KTSKRKTKVVR-KTRNPTFNEMLVYDGFPK-EILQQ--R 1593 (1639)
T ss_pred EEEEhhhhcccccccC---CCCCCcceeEEecC----Cch-Hhhhhhhcccc-ccCCCchhhheeecCCch-hhhhh--h
Confidence 4677889999954321 34789999875532 221 25788999998 58999999999986 554 22333 4
Q ss_pred EEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 80 CIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 80 ~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
.|++.|+..+.+..+.++|.+.|||.++--..| ...||+|-
T Consensus 1594 eLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1594 ELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred eeeeeeecccceeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 899999999988889999999999998832222 12499983
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=3.1e-06 Score=74.05 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=87.3
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE--cccCccccCce
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP--TDCNAFFANRY 78 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~--v~~~~l~~~~~ 78 (192)
|+.||..|++|+.++ +.+..|||+...+...+ ....+++|++.. |+.||.|||+.... .++ +. ..
T Consensus 95 ~~~tl~~a~~lk~~~---~~~~~d~~~~~~llpga-----~kl~slr~~t~~-n~lN~~w~etev~~~i~~~-~~---~~ 161 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPMD---INGLADPYVKLHLLPGA-----GKLNSLRTKTTR-NTLNPEWNETEVYEGITDD-DT---HL 161 (362)
T ss_pred cceeechhcccchhh---hhhhcchHHhhhcccch-----hhhhhhhHHhhc-cCcCcceeccceecccccc-hh---hh
Confidence 578999999999998 45689999998875422 124568888875 68999999987764 333 21 23
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCC-cceeEEEEEE--e-CCC-CcccEEEEEEEEEee
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGG-SVRNLSYRLR--A-RDG-SRGHGVVNLAIKLEP 142 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~-~~~~~~y~L~--~-~~G-~k~~G~l~l~v~f~~ 142 (192)
..+++.|+|++.+..+.++|+.+++|..|...... .-.|+..++- + .+. -..+|.|.+++.|-.
T Consensus 162 K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 162 KVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred hhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 57899999999888889999999999988532110 1111122221 1 011 146788877777655
No 123
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.69 E-value=6.6e-05 Score=58.04 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=69.4
Q ss_pred CEEEEEEeeCCCCCC-------CCC-c--CCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc-
Q 029535 1 MEITILSAQGLKNTS-------FTL-F--SSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD- 69 (192)
Q Consensus 1 LeVtVisAk~L~~~~-------~~~-~--~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~- 69 (192)
|.|.|+.|-+|+..- .++ . .--.++||++++. .-++ ....+|+++. .++-|.+|..+.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lS----Fl~~--~e~r~TrtVA-rSFcPeF~Hh~Efpc~l 73 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLS----FLPE--KELRRTRTVA-RSFCPEFNHHVEFPCNL 73 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEec----cCCC--Cceeeccchh-hhcCCCccceEEEeccc
Confidence 678899998887521 100 0 0136899999852 1122 2567888886 5899999999999987
Q ss_pred -------cC----ccccCceeEEEEEEEEccCC----------CCCeeeEEEEEeCccccCC
Q 029535 70 -------CN----AFFANRYACIYLQLYTKTLI----------SGQTLLGWCQIPVNDIGFP 110 (192)
Q Consensus 70 -------~~----~l~~~~~~~L~veV~d~~~~----------~~d~~IG~~~IpL~~l~~~ 110 (192)
+. ++++ .+.+.|+||+...- .+|-++|.+.||+.+|+..
T Consensus 74 v~~~~~Ge~~sLAElLe--~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 74 VVQRNSGEAISLAELLE--SAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred EEEcCCCccccHHHHhh--cceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 10 1122 35899999986421 2567899999999999753
No 124
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.62 E-value=0.00044 Score=55.02 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=59.2
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|++|.++.-.+ ..|-||++++|. ++..-+....|+... ..++.|||.++|++.=..+- ..+.
T Consensus 10 ~~v~i~~~~~~~~~~------~~~l~V~v~l~~----g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP--r~Ar 75 (158)
T cd08398 10 LRIKILCATYVNVND------IDKIYVRTGIYH----GGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP--RSAR 75 (158)
T ss_pred eEEEEEeeccCCCCC------cCeEEEEEEEEE----CCEEccCeeEecccC--CCCCccceeEEcccchhcCC--hhhe
Confidence 579999999987543 468899999874 221001222454343 26899999999987653332 2379
Q ss_pred EEEEEEEccCCC----CCeeeEEEEEeCcc
Q 029535 81 IYLQLYTKTLIS----GQTLLGWCQIPVND 106 (192)
Q Consensus 81 L~veV~d~~~~~----~d~~IG~~~IpL~~ 106 (192)
|.|+|++...-. ...+||++.++|-+
T Consensus 76 L~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 76 LCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 999999864311 12457777766655
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=97.54 E-value=0.00012 Score=69.80 Aligned_cols=100 Identities=17% Similarity=0.307 Sum_probs=72.7
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
.+|+++|+ ++ ..|||..+-.+ + .|.+||.+.+ ++.||+||+...|.+...+ ..+.
T Consensus 57 ~~~~~~~~----~~------~~~~~~~~~~~-----g----~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~-----~~~~ 111 (644)
T PLN02964 57 LLTLVGAE----MK------FKDKWLACVSF-----G----EQTFRTETSD-STDKPVWNSEKKLLLEKNG-----PHLA 111 (644)
T ss_pred EEEeehhh----hc------cCCcEEEEEEe-----c----ceeeeecccc-ccCCcccchhhceEeccCC-----cceE
Confidence 46777776 54 24888765332 2 4899999876 5999999999999887633 1467
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
+|.|+|.+.++.++++|.+.++|.++..+...++. ..|.+.+++|
T Consensus 112 ~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elk-eaF~lfD~dg 156 (644)
T PLN02964 112 RISVFETNRLSKNTLVGYCELDLFDFVTQEPESAC-ESFDLLDPSS 156 (644)
T ss_pred EEEEEecCCCCHHHhhhheeecHhhccHHHHHHHH-HHHHHHCCCC
Confidence 99999999999999999999999998643221211 1366666654
No 126
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.54 E-value=0.00053 Score=55.26 Aligned_cols=77 Identities=17% Similarity=0.356 Sum_probs=52.1
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|++|.+|.-.+ ...+-||++++|- ++..-+....|+... ...++.|||.+.|++.-..|. +.+.
T Consensus 10 f~i~i~~~~~~~~~~-----~~~~l~V~~~lyh----G~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP--r~Ar 77 (173)
T cd08693 10 FSITLHKISNLNAAE-----RTMKVGVQAGLFH----GGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP--RMAR 77 (173)
T ss_pred EEEEEEEeccCccCC-----CCceEEEEEEEEE----CCEEccCceEccccC-CCCccccceeEEcccchhcCC--hhHe
Confidence 579999999998622 2567799988874 321112334566554 346799999999987553332 2379
Q ss_pred EEEEEEEcc
Q 029535 81 IYLQLYTKT 89 (192)
Q Consensus 81 L~veV~d~~ 89 (192)
|.|.||+..
T Consensus 78 Lciti~~~~ 86 (173)
T cd08693 78 LCFAIYEVS 86 (173)
T ss_pred EEEEEEEec
Confidence 999999864
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.47 E-value=6.5e-05 Score=73.47 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=70.0
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
+|.|+.|.+|...|. .|..||||.+.+ ++ +...-++..+. ++.||++++.|.+...- ++ ...|
T Consensus 616 rVyvv~A~~L~p~D~---ng~adpYv~l~l------Gk--~~~~d~~~yip-~tlnPVfgkmfel~~~l-p~----ek~l 678 (1105)
T KOG1326|consen 616 RVYVVEAFSLQPSDG---NGDADPYVKLLL------GK--KRTLDRAHYIP-NTLNPVFGKMFELECLL-PF----EKDL 678 (1105)
T ss_pred EEEEEEeeeccccCC---CCCcCceeeeee------cc--chhhhhhhcCc-CCCCcHHHHHHHhhccc-ch----hhcc
Confidence 689999999999983 368999999875 32 12234556565 58999999999887655 32 1479
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
.++|||++.+++|+.||+..|.|.+=
T Consensus 679 ~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 679 IVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred eeEEEEeecccccchhhceehhhhhc
Confidence 99999999998999999999998853
No 128
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.37 E-value=0.0011 Score=51.90 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=62.0
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
+.|+|.++.++...+ ....+-||++++|- ++..-.....|.... ...++.|||.+.|++.-..+ .. .+.
T Consensus 10 ~~i~i~~~~~~~~~~----~~~~~l~V~~~l~~----g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~L-P~-~ar 78 (156)
T cd08380 10 LRIKIHGITNINLLD----SEDLKLYVRVQLYH----GGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDL-PR-EAR 78 (156)
T ss_pred eEEEEEeeccccccC----CCceeEEEEEEEEE----CCEEccCceeccCCc-CCCCCcccceeEccchhhcC-Ch-hhe
Confidence 467788887776522 12568889998875 221112233454443 24689999999998654333 22 369
Q ss_pred EEEEEEEccCCC--CCeeeEEEEEeCccc
Q 029535 81 IYLQLYTKTLIS--GQTLLGWCQIPVNDI 107 (192)
Q Consensus 81 L~veV~d~~~~~--~d~~IG~~~IpL~~l 107 (192)
|.|.||+..... .+.+||++.++|=+-
T Consensus 79 L~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 79 LCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 999999976432 357899988887664
No 129
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00033 Score=61.53 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=69.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|.|+++.+..|..+|. .+-+||||.+.+ . .+-+ ...+.||.+.+ ++.||.+|+.|.|.+.+..|. .-.
T Consensus 235 l~vt~iRc~~l~ssDs---ng~sDpyvS~~l--~--pdv~-~~fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa---~~k 302 (362)
T KOG1013|consen 235 LIVTIIRCSHLASSDS---NGYSDPYVSQRL--S--PDVG-KKFKKKTQQKK-KTLNPEFDEEFFYDIGPGDLA---YKK 302 (362)
T ss_pred eEEEEEEeeeeecccc---CCCCCccceeec--C--CCcc-hhhcccCcchh-ccCCccccccccccCCccchh---cce
Confidence 5799999999998883 357999998754 2 1211 35788999886 589999999999999885542 248
Q ss_pred EEEEEEEccCCCCCeeeEEEEEeCc
Q 029535 81 IYLQLYTKTLISGQTLLGWCQIPVN 105 (192)
Q Consensus 81 L~veV~d~~~~~~d~~IG~~~IpL~ 105 (192)
+.|.|+|++...+.+++|-...-+.
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc
Confidence 9999999988667778876554433
No 130
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.25 E-value=0.00026 Score=63.89 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=88.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccC-----cccc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCN-----AFFA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~-----~l~~ 75 (192)
|+++|++++++.-... ....|-||.++.-..+ | ..++.+|.+++ ++..|.++|.|.+.+..- ++..
T Consensus 369 lel~ivrg~~~pvp~g---p~hld~fvr~efpl~n----D-~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR 439 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGG---PMHLDQFVRLEFPLEN----D-SRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQR 439 (523)
T ss_pred hHHHHhhcccCCCCCC---chhHHhhhcccccccc----c-ccccCccceee-CCCCCCcccceeeeccCCCcccHHHHH
Confidence 4567777777765541 1246888888753322 3 35888999997 589999999999987541 1100
Q ss_pred --CceeEEEEEEEEccCC-CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 76 --NRYACIYLQLYTKTLI-SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 76 --~~~~~L~veV~d~~~~-~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+ ..+.|++|++..| .+|+++|++.|.|.-|...-+ -+..|+|.+... ...|.|.+.|++-.+
T Consensus 440 ~fkr-~g~kfeifhkggf~rSdkl~gt~nikle~Len~ce---i~e~~~l~DGRK-~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 440 RFKR-LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE---ICEYLPLKDGRK-AVGGKLEVKVRIRQP 505 (523)
T ss_pred HHHh-cCeeEEEeeccccccccceeceeeeeehhhhcccc---hhhceecccccc-ccCCeeEEEEEEecc
Confidence 11 3689999998664 679999999999998864311 234788875322 467899999887653
No 131
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.18 E-value=0.00083 Score=48.87 Aligned_cols=93 Identities=12% Similarity=0.211 Sum_probs=65.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
=|||+.++||..... -+....-|+. |+..+. +...+||.+. .+..||.++|||.|.+.-..+ +...|
T Consensus 2 witv~~c~d~s~~~~--~~e~~~i~ik----g~~tl~---kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL---~~V~L 68 (103)
T cd08684 2 WITVLKCKDLSWPSS--CGENPTIYIK----GILTLP---KPVHFKSSAK-EGSNDIEFMETFVFAIKLQNL---QTVRL 68 (103)
T ss_pred EEEEEEecccccccc--cCcCCeeEEE----EEEecC---CCccccchhh-cCCCChhHHHHHHHHHHHhhc---cceEE
Confidence 379999999987762 1223344443 222232 2467889866 478999999999998865222 33688
Q ss_pred EEEEEEccCCCCCeeeEEEEEeCccccC
Q 029535 82 YLQLYTKTLISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 82 ~veV~d~~~~~~d~~IG~~~IpL~~l~~ 109 (192)
.|.|+.. ..+.+.||++.+.|.++..
T Consensus 69 ~fsv~~~--~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 69 VFKIQTQ--TPRKRTIGECSLSLRTLST 94 (103)
T ss_pred EEEeecc--CCccceeeEEEeecccCCH
Confidence 9999883 3477899999999999864
No 132
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.95 E-value=0.0034 Score=49.92 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQ 101 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~ 101 (192)
..|-||++++|. ++..-+....|+... -+..+.|||-+.|++.=..+-. .+.|.|+||+....++..+||.+.
T Consensus 29 ~~~l~V~~~l~~----~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~--~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 29 NSDLFVTCQVFD----DGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPR--NSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred CCCEEEEEEEEE----CCEeccCcEEccccC-CCCCcccceeEEcccchhcCCh--hheEEEEEEEecCCCCceEEEEEE
Confidence 578899999874 221112233555443 3567899999999876544322 379999999976534567889888
Q ss_pred EeCccc
Q 029535 102 IPVNDI 107 (192)
Q Consensus 102 IpL~~l 107 (192)
++|=+-
T Consensus 102 ~~lFd~ 107 (159)
T cd08397 102 LSLFNK 107 (159)
T ss_pred EeeECC
Confidence 887653
No 133
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.90 E-value=0.0041 Score=49.78 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=59.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeec---CCCCCCeeceEEEEEcccCccccCc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDD---HGGVNPTWGDKFYVPTDCNAFFANR 77 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~---~~g~nP~WNE~f~f~v~~~~l~~~~ 77 (192)
+.|+|.++.++..... ....|=||++++|- ++..-+....|+... .-...+.|||.+.|++.-..+ . +
T Consensus 10 ~~i~v~~~h~~~~~~~---~~~~~~~v~~~l~~----g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-P-r 80 (171)
T cd04012 10 LSVTVSSLHRIPPTWV---QSFEDFYLSCSLYH----GGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-P-R 80 (171)
T ss_pred EEEEEEEeecCChHHh---hccccEEEEEEEEE----CCEECcCceeccccccccCccccccccceEECccchhcC-C-h
Confidence 4688999999987531 12578899998874 221112233454321 112367899999998755333 2 2
Q ss_pred eeEEEEEEEEccCCC---------CCeeeEEEEEeCccc
Q 029535 78 YACIYLQLYTKTLIS---------GQTLLGWCQIPVNDI 107 (192)
Q Consensus 78 ~~~L~veV~d~~~~~---------~d~~IG~~~IpL~~l 107 (192)
.+.|.|.+|+..... .+.+||++.++|=|.
T Consensus 81 earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 81 ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred hHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 379999999865432 235667766665543
No 134
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.87 E-value=0.021 Score=46.34 Aligned_cols=127 Identities=12% Similarity=-0.007 Sum_probs=70.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
++|+|+++..+ +.+. .....-||++++|. ++. .....+|.... -+.++.|||-+.|++.=..+- ..+.
T Consensus 12 friki~~~~~~-~~~~---~~~~~l~V~~~Ly~----g~~-~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP--~~ar 79 (178)
T cd08399 12 FRVKILGIDIP-VLPR---NTDLTVFVEANIQH----GQQ-VLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLP--KGAL 79 (178)
T ss_pred EEEEEEeeccc-CcCC---CCceEEEEEEEEEE----CCe-ecccceeeccC-CCCCccccccEECccccccCC--hhhE
Confidence 46888888733 3321 12456788888875 221 11223555554 357899999999987654432 2379
Q ss_pred EEEEEEEccCCCC-CeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLISG-QTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~~~-d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.|+||+...-.. .+.+|.. +.+.-. ..+..+.+....|++.+|.=.+|...|.+|-.+
T Consensus 80 Lc~ti~~~~~~~~~~~~~~~~--~~~~~~-~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 80 LNLQIYCGKAPALSSKKSAES--PSSESK-GKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEEecCcccccccccc--cccccc-cccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999998632111 1222221 111111 112245566677776665325788888888655
No 135
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.77 E-value=0.0082 Score=46.38 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCcccCCCCCc-cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCC----eeeE
Q 029535 24 RPFVTITTYPPATTSGDKHC-HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQ----TLLG 98 (192)
Q Consensus 24 dPYV~v~~y~~~~i~~d~~~-~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d----~~IG 98 (192)
+-||++++|- ++..-+ ....|+...-...++.|||.+.|++.=..+- . .+.|.|.|++......+ .+||
T Consensus 3 ~~~V~~~ly~----g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r-~a~L~~~l~~~~~~~~~~~~~~~lg 76 (142)
T PF00792_consen 3 KLYVECQLYH----GGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP-R-EARLCFTLYGVDSKKKSKKKKVPLG 76 (142)
T ss_dssp EEEEEEEEEE----TTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--T-TEEEEEEEEEEECSTTT--EEEEEE
T ss_pred eEEEEEEEEE----CCEEeecCeeeccccccccccceEeeEEEeecChHHCC-h-hHeEEEEEEEecCCCccccceeEEE
Confidence 3477788773 221112 1236665543226999999999986543332 2 37999999997664444 6899
Q ss_pred EEEEeCccc
Q 029535 99 WCQIPVNDI 107 (192)
Q Consensus 99 ~~~IpL~~l 107 (192)
++.++|=+.
T Consensus 77 w~n~~lFd~ 85 (142)
T PF00792_consen 77 WVNLPLFDY 85 (142)
T ss_dssp EEEEESB-T
T ss_pred EEEEEeECC
Confidence 999887765
No 136
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.70 E-value=0.14 Score=39.04 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=78.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcc----cCcc-cc
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTD----CNAF-FA 75 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~----~~~l-~~ 75 (192)
+.|+|...++++... ..-| |. |-.++.+.....|.........-.|||.|.+.+. .... .+
T Consensus 9 ~~l~i~~l~~~p~~~-------~~v~--v~-----wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~ 74 (143)
T PF10358_consen 9 FDLTIHELENLPSSN-------GKVF--VK-----WKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQ 74 (143)
T ss_pred EEEEEEEeECcCCCC-------CEEE--EE-----EEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEe
Confidence 367888888888633 1122 22 3344432114566665555667899999988542 2111 12
Q ss_pred CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEeecCCCC
Q 029535 76 NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPVVPDT 147 (192)
Q Consensus 76 ~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~~~~~ 147 (192)
. ..+.|.|+....-+....+|++.|.|++++...+ ......|+|... .+....|++++.+.....++
T Consensus 75 ~--K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 75 P--KELKFSVFEVDGSGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC--KKSNATLSISISLSELREDP 141 (143)
T ss_pred e--EEEEEEEEEecCCCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC--CCCCcEEEEEEEEEECccCC
Confidence 2 4788888886431223699999999999986432 234456777543 24577899999988865443
No 137
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.002 Score=57.53 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=76.9
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
|+|.||.|++|-..... ...++|||+|.+.. ++.-..+.+|+...+ +..|.+.+.+.|.-+.. ...
T Consensus 271 l~vEii~ar~l~~k~~~--k~~~apyVkVYlL~-----~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~------~k~ 336 (405)
T KOG2060|consen 271 LEVEIIRARGLVVKPGS--KSLPAPYVKVYLLE-----NGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP------GKY 336 (405)
T ss_pred eeEEEEecccccccCCc--ccccCceeEEEEcC-----CCceecccccccccc-cCchhhhhhhhhccCCC------ccE
Confidence 68999999999765421 12679999987643 322235678888763 56666666677765541 258
Q ss_pred EEEEEE-EccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCC
Q 029535 81 IYLQLY-TKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG 127 (192)
Q Consensus 81 L~veV~-d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G 127 (192)
|.+.|+ |+.+...+.++|.+.|-|.+|.-.. .+-.-||+|+..+.
T Consensus 337 Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgsss 382 (405)
T KOG2060|consen 337 LQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSSS 382 (405)
T ss_pred EEEEEeccccccchHHHhhHHHHHhhhhcccc--ccceeeeeccCCcc
Confidence 999999 4666667889999999999994211 23445999986544
No 138
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.47 E-value=0.00083 Score=65.99 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEE-c--ccC--ccccCc
Q 029535 3 ITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVP-T--DCN--AFFANR 77 (192)
Q Consensus 3 VtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~-v--~~~--~l~~~~ 77 (192)
+.|..|+.|...+. .+.+|||+.+... + |.+.|-+.. ++.||.||+++.|. + -.. ..+++.
T Consensus 210 ~yiyQar~L~a~dk---~~~sdp~a~v~f~-----~-----qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~p 275 (1105)
T KOG1326|consen 210 SYIYQARALGAPDK---DDESDPDAAVEFC-----G-----QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNP 275 (1105)
T ss_pred HHHHHHHhhcCCCc---ccCCCchhhhhcc-----c-----ccceeEeec-CcCCCCccceeeccceeecCccchhhcCC
Confidence 34556788877762 3478999988632 1 567788775 69999999999984 2 110 111221
Q ss_pred eeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCcccEEEEEEE
Q 029535 78 YACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAI 138 (192)
Q Consensus 78 ~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v 138 (192)
-.+.|+|||.++.+.++++|+......=..+.+ +..|+++.+ |+...|.+.++.
T Consensus 276 -pi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~p----~lkw~p~~r--g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 276 -PIRVFEVYDLDRSGINEFKGRKKQRPYVMVQCP----ALKWVPTMR--GAFLDGDVLIAA 329 (1105)
T ss_pred -CeEEEEeehhhhhchHHhhcccccceEEEecCC----ccceEEeec--ccccccchhHHH
Confidence 478999999998888999998766655443322 345888874 336777776665
No 139
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.27 E-value=0.0083 Score=55.92 Aligned_cols=93 Identities=19% Similarity=0.360 Sum_probs=63.9
Q ss_pred EEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEE
Q 029535 6 LSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQL 85 (192)
Q Consensus 6 isAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV 85 (192)
+.|++|.+++ +|+ +.|||..+. -.. +.+......+|.+.+ ++.||.|- .|.+.+.. -...+....+.+++
T Consensus 143 ~~~~~ld~kd--~f~-ksd~~l~~~--~~~--~d~s~~~~~~tEv~~-n~l~p~w~-~~~i~~~~-l~~~~~~~~~~i~~ 212 (529)
T KOG1327|consen 143 FRAKNLDPKD--FFS-KSDPYLEFY--KRV--DDGSTQMLYRTEVVK-NTLNPQWA-PFSISLQS-LCSKDGNRPIQIEC 212 (529)
T ss_pred eeeeecCccc--ccc-cCCcceEEE--Eec--CCCceeeccccceec-cCCCCccc-ccccchhh-hcccCCCCceEEEE
Confidence 3467777776 664 899998764 221 222235677999887 58999998 45555433 11111225789999
Q ss_pred EEccCCCCCeeeEEEEEeCcccc
Q 029535 86 YTKTLISGQTLLGWCQIPVNDIG 108 (192)
Q Consensus 86 ~d~~~~~~d~~IG~~~IpL~~l~ 108 (192)
||++.-+++++||++..++.++.
T Consensus 213 ~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 213 YDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred eccCCCCCcCceeEecccHHHhc
Confidence 99988767799999999998884
No 140
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.01 E-value=0.059 Score=40.21 Aligned_cols=94 Identities=20% Similarity=0.152 Sum_probs=52.3
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCcccc--CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEE
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFA--NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYR 121 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~--~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~ 121 (192)
..+.|.+.. |.||..|-+-+|.|....+.- .+...+.+|++..-. ..-+.||.+.|+|..++...+.. ...+..
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~-i~~~~~ 86 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGER-IHGSAT 86 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S---EEEEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCce-EEEEEE
Confidence 467899886 799999999888776543321 123589999998653 24578999999999997543312 334667
Q ss_pred EEeCCCCcccEEEEEEEEEee
Q 029535 122 LRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 122 L~~~~G~k~~G~l~l~v~f~~ 142 (192)
|.+.+| ..-|.|++.+++.-
T Consensus 87 l~g~~~-~~~g~l~y~~rl~~ 106 (107)
T PF11618_consen 87 LVGVSG-EDFGTLEYWIRLRV 106 (107)
T ss_dssp E-BSSS--TSEEEEEEEEEEE
T ss_pred EeccCC-CeEEEEEEEEEecC
Confidence 777777 58999999998753
No 141
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.97 E-value=0.034 Score=45.56 Aligned_cols=60 Identities=22% Similarity=0.501 Sum_probs=43.8
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-CC-CeeeEEEEEeCcc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-SG-QTLLGWCQIPVND 106 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-~~-d~~IG~~~IpL~~ 106 (192)
...++|.|... ..+|.|||++++.++.+ ...+ ..|.|++++...- .+ ..++|.+.+||-+
T Consensus 52 ~se~~S~V~yH-~~~P~W~EtiKi~lP~~-~~~~--~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYH-NNSPRWNETIKLPIPID-KFRG--SHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEc-CCCCCCceeEEEecChh-hCCC--eeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 46788888753 68999999999999883 3333 6899998874321 12 2689999999853
No 142
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.73 E-value=0.12 Score=41.18 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=73.7
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCcccc--------CceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFA--------NRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGS 114 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~--------~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~ 114 (192)
.|+++|+-+. ...+|.++|.|-|.++...... .-...|++.|...+..+...++|+-.+....++..+.+
T Consensus 44 ~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~- 121 (156)
T PF15627_consen 44 GQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG- 121 (156)
T ss_pred CceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCC-
Confidence 4899999886 6899999999999987743111 01136788888777665668999999999988765432
Q ss_pred ceeEEEEEEeCCCC--cccEEEEEEEEEeecC
Q 029535 115 VRNLSYRLRARDGS--RGHGVVNLAIKLEPVV 144 (192)
Q Consensus 115 ~~~~~y~L~~~~G~--k~~G~l~l~v~f~~~~ 144 (192)
...+..+|...... -+.|.|++.+.+.|..
T Consensus 122 ~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 122 STSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred ccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 23567788765432 3899999999998854
No 143
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.71 E-value=0.057 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.339 Sum_probs=35.4
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCC-C--CeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLIS-G--QTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~-~--d~~IG~~~IpL~~ 106 (192)
..+.|.|.- ...+|.|+|+|.+.++. .+..+ ..|.|++++...-. + +.++|.+.+||.+
T Consensus 59 ~~~~S~v~y-h~k~P~f~deiKi~LP~-~l~~~--~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYY-HNKNPQFNDEIKIQLPP-DLFPK--HHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----T-T-SS-EEEEEEEEEE-C-CCCTT--EEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEe-cCCCCCccEEEEEEcCc-hhccc--EEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456777664 46899999999999987 43333 68999999853311 2 2799999999987
No 144
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.30 E-value=0.089 Score=42.24 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.5
Q ss_pred EEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-----CCCeeeEEEEEeCcc
Q 029535 45 VYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-----SGQTLLGWCQIPVND 106 (192)
Q Consensus 45 ~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-----~~d~~IG~~~IpL~~ 106 (192)
..-|.+...+ .+|.|+|+|.+.++. .+..+ ..|.|++++-..- ....++|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~-~l~~~--~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPA-DLTPQ--HHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCC-ccCCC--eEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444444 899999999999977 33233 6899999985421 235789999999886
No 145
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.18 E-value=0.11 Score=42.90 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=43.0
Q ss_pred ccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC-CC---CeeeEEEEEeCc
Q 029535 43 CHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI-SG---QTLLGWCQIPVN 105 (192)
Q Consensus 43 ~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~-~~---d~~IG~~~IpL~ 105 (192)
...++|.|.- ...+|.|||++++.++.+. ..+ ..|.|++++...- .+ ..++|.+.+||-
T Consensus 52 ~se~~S~V~Y-h~~~P~W~EtIKl~lP~~~-~~~--~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYY-QVDKPKWFETFKVAIPIED-FKS--SHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEe-ecCCCCCceeEEEecChhh-CCC--eEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4677888854 2579999999999998733 333 6899999874321 12 368999999986
No 146
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.94 E-value=0.39 Score=42.78 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=85.0
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccC--cee
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFAN--RYA 79 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~--~~~ 79 (192)
-|.|+.|++.+... +..-.+... .++ ....|-... +.-.|.||..+.+.++-..+.+. +..
T Consensus 3 vl~i~egr~F~~~~------~~~~vv~a~------~ng----~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~t 65 (340)
T PF12416_consen 3 VLSILEGRNFPQRP------RHPIVVEAK------FNG----ESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRT 65 (340)
T ss_pred EEEEecccCCCCCC------CccEEEEEE------eCC----ceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCC
Confidence 47888888887653 122222222 343 456777554 57899999999999986443321 125
Q ss_pred EEEEEEEEcc-CCCCCeeeEEEEEeCccc---cCCCCCcceeEEEEEEeCCC--CcccEEEEEEEEEeecCC
Q 029535 80 CIYLQLYTKT-LISGQTLLGWCQIPVNDI---GFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIKLEPVVP 145 (192)
Q Consensus 80 ~L~veV~d~~-~~~~d~~IG~~~IpL~~l---~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~f~~~~~ 145 (192)
.|.+++|.-+ .-+..+.||.+.++|... ... .......||+|..-++ .+.+-+|.+.+...+...
T Consensus 66 PiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 66 PIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ceEEEEEEecCCCCcceeccEEEEEcccccccccc-ccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 7899999876 334568999999999988 221 1246778999997532 235668888888888654
No 147
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.84 E-value=0.75 Score=33.42 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEcc
Q 029535 23 IRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKT 89 (192)
Q Consensus 23 ~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~ 89 (192)
.+-||++++|- ++..-.....|+... ....+.|||-+.|++.=..+. ..+.|.|.+|+..
T Consensus 32 ~~l~v~~~l~~----g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LP--r~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYH----GGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLP--REARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEE----CCEEccCcEEecccC-CCCCcccceeEEccCchhcCC--hhhEEEEEEEEee
Confidence 38899998874 221111233455443 345699999999986553332 2379999999853
No 148
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=92.73 E-value=0.6 Score=37.95 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC------CCCeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI------SGQTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~------~~d~~IG~~~IpL~~ 106 (192)
....|.|.-. +.+|.|+|.|.+.++. .+.++ ..|.|+.++-..- ....++|-+.+||-.
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~-~l~~~--hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPA-DLTDN--HHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCC-CCCCC--eEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 4667887653 6899999999999987 43333 5899999983221 113678888888764
No 149
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.83 E-value=0.35 Score=47.74 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=77.4
Q ss_pred CCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEE
Q 029535 23 IRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQI 102 (192)
Q Consensus 23 ~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~I 102 (192)
+++|+++.+- +..-.+|+...+.-.+|.|.+.|.+...+. ...+.+.+.+.+..+-.+.+|.+++
T Consensus 138 ~e~Ylt~~l~---------~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~------~g~v~~~~~~~~~~G~s~~w~~v~~ 202 (887)
T KOG1329|consen 138 LENYLTVVLH---------KARYRRTHVIYEFLENSRWSFSFDIGFAHK------AGYVIFRVKGARVPGWSKRWGRVKI 202 (887)
T ss_pred ccchheeeec---------hhhhhchhhhhcccccchhhhhcccccccc------ccEEEEeecCCccccceeEEEEecc
Confidence 5889988652 134556777665448999999999888772 2589999999887754899999999
Q ss_pred eCccccCCCCCcceeEEEEEEeCCCCcccE--EEEEEEEEeecCCCC
Q 029535 103 PVNDIGFPPGGSVRNLSYRLRARDGSRGHG--VVNLAIKLEPVVPDT 147 (192)
Q Consensus 103 pL~~l~~~~~~~~~~~~y~L~~~~G~k~~G--~l~l~v~f~~~~~~~ 147 (192)
|+-.+... .....++.+.+.++...+| .+.+.+.|.+....+
T Consensus 203 s~~~~~~~---~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~ 246 (887)
T KOG1329|consen 203 SFLQYCSG---HRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEKDR 246 (887)
T ss_pred chhhhhcc---ccccceeeeeccCCccccCCcccceEEeeEeechhh
Confidence 99999753 2233488888877733222 567778888876544
No 150
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.22 E-value=1.2 Score=36.45 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.2
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCC---------CCCeeeEEEEEeCcc
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLI---------SGQTLLGWCQIPVND 106 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~---------~~d~~IG~~~IpL~~ 106 (192)
....|.|.-. ..+|.|+|.+.+.++. .+-++ ..|.|+.++-..- ....++|-+.+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~-~l~~~--hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPT-QLHEK--HHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCC-cCCCC--eeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567787764 5899999999999987 43333 5899999985311 113578888888765
No 151
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.91 E-value=1.2 Score=32.67 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=47.3
Q ss_pred cEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEEEEE
Q 029535 44 HVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLR 123 (192)
Q Consensus 44 ~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~ 123 (192)
....|.-..- .+..|+++|.|.++-+ ..|.|.||-.+- ..+=|...+.|.+... ....+|
T Consensus 21 ~VgqT~Wk~~--s~q~WDQ~Fti~LdRs-------RELEI~VywrD~---RslCav~~lrLEd~~~-------~~~~~l- 80 (98)
T cd08687 21 VVGQTQWKPK--SNQAWDQSFTLELERS-------RELEIAVYWRDW---RSLCAVKFLKLEDERH-------EVQLDM- 80 (98)
T ss_pred EEeecccccc--ccccccceeEEEeecc-------cEEEEEEEEecc---hhhhhheeeEhhhhcc-------cceecc-
Confidence 5566665543 5889999999999872 479999996543 2355667777777431 123333
Q ss_pred eCCCCcccEEEEEEEEE
Q 029535 124 ARDGSRGHGVVNLAIKL 140 (192)
Q Consensus 124 ~~~G~k~~G~l~l~v~f 140 (192)
.++|.+-..+.|
T Consensus 81 -----epqg~l~~ev~f 92 (98)
T cd08687 81 -----EPQLCLVAELTF 92 (98)
T ss_pred -----ccccEEEEEEEe
Confidence 466666666666
No 152
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.23 E-value=0.82 Score=40.59 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=69.6
Q ss_pred EEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEE
Q 029535 2 EITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACI 81 (192)
Q Consensus 2 eVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L 81 (192)
=+++..+++|+-... --+-..+=|+++.. + ...+.||.+-. ++.--.|.|+|+..+-.. ..+
T Consensus 54 ~~H~~~GRGLr~~p~-~kglt~~~ycVle~------d---rqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-------~vl 115 (442)
T KOG1452|consen 54 YFHAYNGRGLRMTPQ-QKGLTVCFYCVLEP------D---RQHPARTRVRS-SGPGFAWAEDFKHDVVNI-------EVL 115 (442)
T ss_pred EEEEecccccccChh-ccCceeeeeeeeee------c---ccCcccccccc-CCCCccchhhceeecccc-------eee
Confidence 367888899986542 11224566666543 3 24678888664 578889999999988651 578
Q ss_pred EEEEEEccCCCCCee--eEEEEEeCccccC-CCCCcceeEEEEEEeCCCCcccEEEEEEEEEeec
Q 029535 82 YLQLYTKTLISGQTL--LGWCQIPVNDIGF-PPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEPV 143 (192)
Q Consensus 82 ~veV~d~~~~~~d~~--IG~~~IpL~~l~~-~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~~ 143 (192)
.+-||.+..-.+.++ .| -+.+..+.. .++ +.+.+.| .++|.+-+.+.+.+.
T Consensus 116 ~~lvySW~pq~RHKLC~~g--~l~~~~v~rqspd---~~~Al~l------ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 116 HYLVYSWPPQRRHKLCHLG--LLEAFVVDRQSPD---RVVALYL------EPRGQPPLRLPLADP 169 (442)
T ss_pred eEEEeecCchhhccccccc--hhhhhhhhhcCCc---ceeeeec------ccCCCCceecccCCh
Confidence 999999876444443 44 233333322 222 2233333 467777777777764
No 153
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=87.96 E-value=2.1 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=42.5
Q ss_pred EEEEEEEEccC---CCCCeeeEEEEEeCccccC-----------CCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 80 CIYLQLYTKTL---ISGQTLLGWCQIPVNDIGF-----------PPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 80 ~L~veV~d~~~---~~~d~~IG~~~IpL~~l~~-----------~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
.|.+.+++-.. .....+||.+.|++.+... .+......-.|+|+++.| ..-|.|.+.+++..
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~-~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG-NPVGEISLYIRLSC 105 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC-ceeeeEEEEEEEec
Confidence 56666665322 2356789999999998741 111122334699999887 68999999999764
No 154
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.93 E-value=8.9 Score=30.47 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecC-CCCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEE
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDH-GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWC 100 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~-~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~ 100 (192)
+..-|+++-+ ++ +...+|+...- ..+.=..||.|.+.+...+ ..|.++||.... ..+..|+.+
T Consensus 36 ~~~~~ikl~~------N~---k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P------esi~l~i~E~~~-~~~~~la~v 99 (168)
T PF15625_consen 36 KTRYYIKLFF------ND---KEVSRTRSRPLWSDFRVHFNEIFNVQITRWP------ESIKLEIYEKSG-LSDRLLAEV 99 (168)
T ss_pred heeEEEEEEE------CC---EEEEeeeeEecCCCeEEeccCEEEEEEecCC------CEEEEEEEEccC-ccceEEEEE
Confidence 3455666543 32 35667776543 4567788999999987633 489999999876 588999999
Q ss_pred EEeCcccc
Q 029535 101 QIPVNDIG 108 (192)
Q Consensus 101 ~IpL~~l~ 108 (192)
.||+....
T Consensus 100 ~vpvP~~~ 107 (168)
T PF15625_consen 100 FVPVPGST 107 (168)
T ss_pred EeeCCCCc
Confidence 99998773
No 155
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=82.80 E-value=6 Score=31.21 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=51.5
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeec-CCCCCCeeceEEEEEcccCccccCcee
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDD-HGGVNPTWGDKFYVPTDCNAFFANRYA 79 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~-~~g~nP~WNE~f~f~v~~~~l~~~~~~ 79 (192)
|.|.|-+.. |++.. ...|||++|++.- ..|..-...+.|.+.. ..+..=.||.+.++...-+.+.. .+
T Consensus 15 l~v~Iekig-lkda~-----~~~~P~~tVSV~D---~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~--Ga 83 (147)
T PF14186_consen 15 LSVFIEKIG-LKDAS-----QYIDPYFTVSVKD---GNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK--GA 83 (147)
T ss_dssp EEEEEEEEE--TTGG-----G-EEEEEEEEEE----TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T--T-
T ss_pred EEEEEEEEE-ECChH-----HccCCeEEEEEEC---CCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC--ce
Confidence 345555555 77764 3579999998631 1121113456677652 22345677877776443323322 36
Q ss_pred EEEEEEEEccCCC-CCeeeEEEEEeCcccc
Q 029535 80 CIYLQLYTKTLIS-GQTLLGWCQIPVNDIG 108 (192)
Q Consensus 80 ~L~veV~d~~~~~-~d~~IG~~~IpL~~l~ 108 (192)
.+.||++++..-. +-...+++-+++.++.
T Consensus 84 ai~fE~kH~K~kk~k~S~kcw~fme~dei~ 113 (147)
T PF14186_consen 84 AIFFEFKHYKPKKKKTSTKCWAFMELDEIK 113 (147)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEEEEGGG--
T ss_pred EEEEEEEeeeccceeeeeeEEEEEEhhhcc
Confidence 8999999986632 3356899999998885
No 156
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=72.50 E-value=28 Score=32.08 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=56.7
Q ss_pred eEEEEEEEEccC-----C-CCCeeeEEEEEeCccccC-CCCCcceeEEEEEEeCCC---CcccEEEEEEEEEeecC----
Q 029535 79 ACIYLQLYTKTL-----I-SGQTLLGWCQIPVNDIGF-PPGGSVRNLSYRLRARDG---SRGHGVVNLAIKLEPVV---- 144 (192)
Q Consensus 79 ~~L~veV~d~~~-----~-~~d~~IG~~~IpL~~l~~-~~~~~~~~~~y~L~~~~G---~k~~G~l~l~v~f~~~~---- 144 (192)
..|.|.||.-.. + .+.++||+++|||.-=.. ...-.++.-|..+-...+ ++...+|||.|+.+|..
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRfVF 174 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRFVF 174 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCeeEE
Confidence 469999998432 2 356899999999983221 111234445666644321 12457999999988753
Q ss_pred ---CCCCCCcceecceeec-cCccceEEecccccccc
Q 029535 145 ---PDTSLDACHVIGIPLI-CQNRLGVNCEEESRLRN 177 (192)
Q Consensus 145 ---~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~ 177 (192)
..|+...++++ +. ..+--+|+|--++|.+.
T Consensus 175 QFdgepecSPQV~Q---iqG~~rQPvFsCKFs~~~~~ 208 (460)
T PF06219_consen 175 QFDGEPECSPQVFQ---IQGNIRQPVFSCKFSRDRNS 208 (460)
T ss_pred EcCCccccCcEEEE---ecCccccceeEEEEEecccC
Confidence 12333333322 11 23566888988877655
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=65.47 E-value=66 Score=25.37 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=49.2
Q ss_pred EEEeEeecCC----CCCCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccccCCCCCcceeEEE
Q 029535 45 VYRTRVDDHG----GVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDIGFPPGGSVRNLSY 120 (192)
Q Consensus 45 ~~rT~v~~~~----g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l~~~~~~~~~~~~y 120 (192)
...|.+.... +..-.||..|.+.+..... .. --.|.|+|+..|..+++.+.|-..+.|..- +. .+....
T Consensus 40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~-~g-wP~L~l~V~~~D~~gr~~~~GYG~~~lP~~---pG--~h~~~v 112 (168)
T PF07162_consen 40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNP-QG-WPQLVLQVYSLDSWGRDRVEGYGFCHLPTQ---PG--RHEVEV 112 (168)
T ss_pred eEEcceeecCcccCCCceEEeccEEEEEEeCCC-CC-CceEEEEEEEEcccCCeEEeEEeEEEeCCC---Cc--eEEEEE
Confidence 4666666422 3567899999988765332 11 248999999999998999998777666433 21 234456
Q ss_pred EEEeC
Q 029535 121 RLRAR 125 (192)
Q Consensus 121 ~L~~~ 125 (192)
++.+|
T Consensus 113 ~~wrP 117 (168)
T PF07162_consen 113 PTWRP 117 (168)
T ss_pred EEEee
Confidence 66665
No 158
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=59.52 E-value=73 Score=31.29 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=70.7
Q ss_pred CEEEEEEeeCCCCCCCCCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeE
Q 029535 1 MEITILSAQGLKNTSFTLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYAC 80 (192)
Q Consensus 1 LeVtVisAk~L~~~~~~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~ 80 (192)
++|.|..-++|+.+.. .-=.||++++ +| .+..|--. ....|.|...=-|.-.+ ++ ..
T Consensus 343 mevvvmevqglksvap-----nrivyctmev------eg----eklqtdqa--easkp~wgtqgdfstth-pl-----pv 399 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVAP-----NRIVYCTMEV------EG----EKLQTDQA--EASKPKWGTQGDFSTTH-PL-----PV 399 (1218)
T ss_pred eeEEEeeeccccccCC-----CeeEEEEEEe------cc----cccccchh--hhcCCCCCcCCCcccCC-CC-----ce
Confidence 5899999999998762 2346888876 44 34555533 35689999987787766 32 46
Q ss_pred EEEEEEEccCC---CCCeeeEEEEEeCccccCCCCCcceeEEEEEEeCCCCc-ccEEEEEEEEEee
Q 029535 81 IYLQLYTKTLI---SGQTLLGWCQIPVNDIGFPPGGSVRNLSYRLRARDGSR-GHGVVNLAIKLEP 142 (192)
Q Consensus 81 L~veV~d~~~~---~~d~~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G~k-~~G~l~l~v~f~~ 142 (192)
+.+.+|.+... ..|+-+|.+.+.-..=. .-..-||...-+.... ..-.|.+.++...
T Consensus 400 vkvklftestgvlaledkelgrvil~ptpns-----~ks~ewh~mtvpknsqdqdlkiklavrmdk 460 (1218)
T KOG3543|consen 400 VKVKLFTESTGVLALEDKELGRVILQPTPNS-----AKSPEWHTMTVPKNSQDQDLKIKLAVRMDK 460 (1218)
T ss_pred eEEEEEeecceeEEeechhhCeEEEecCCCC-----cCCccceeeecCCCCcCccceEEEEEeccC
Confidence 78888876431 36788888776433221 1112267766654422 2335666666543
No 159
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=43.30 E-value=3.2 Score=40.17 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=33.6
Q ss_pred EEEEeeCCCCCCC---CCcCCCCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEccc
Q 029535 4 TILSAQGLKNTSF---TLFSSRIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDC 70 (192)
Q Consensus 4 tVisAk~L~~~~~---~~~~~~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~ 70 (192)
++|+|.++.+-.. +.| .++|++..+. + .+.+||+.-. .+.+|.|||. .+...+
T Consensus 285 ~lI~a~~~~~i~~~~~~~f--~~~~~~itsf------~----~~~frt~~~~-~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 285 TLIGAEMKYDIVEDVAKLF--KDKWLAITSF------G----EQTFRTEISD-DTEKPIYNED-EREDSD 340 (975)
T ss_pred HHhhhhcccchhhhhhhcc--CCCchheeec------c----hhhhhhhhhc-cccccccccc-cccccc
Confidence 4677777754321 122 5777775543 2 3688999775 4799999998 554443
No 160
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=42.23 E-value=89 Score=31.70 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCCCCeeceEEEEEcccCccccCceeEEEEEEEEc
Q 029535 54 GGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTK 88 (192)
Q Consensus 54 ~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~ 88 (192)
+..+|.||+-+.|.+-=..+. +.+.|.|.||.-
T Consensus 389 ~~~~~~Wn~~leFDI~i~DLP--r~ArLc~~i~~v 421 (1076)
T KOG0904|consen 389 GCSFPLWNEWLEFDIYIKDLP--RMARLCLAIYAV 421 (1076)
T ss_pred CccchhccceeEeeeecCCCC--hhhhheeeeeEe
Confidence 468999999988865322221 235788888764
No 161
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=41.43 E-value=44 Score=31.70 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=43.6
Q ss_pred EEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEccC----CCCCeeeEEEEEeCccccC
Q 029535 45 VYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTL----ISGQTLLGWCQIPVNDIGF 109 (192)
Q Consensus 45 ~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~----~~~d~~IG~~~IpL~~l~~ 109 (192)
..+|.++. +-.||.|-++|.+..--+. ...|+|+++|-++ +...+++|++.--++.+.+
T Consensus 42 ~~rte~i~-~~~~p~f~~~~~l~y~fE~-----vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 42 VGRTEVIR-NVLNPFFTKKFLLQYRFEK-----VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccceeeee-ccCCccceeeechhheeee-----eeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 45888887 4799999999887543311 1368999998643 3457899999999988864
No 162
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=39.66 E-value=35 Score=31.11 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=30.8
Q ss_pred eeEEEEEeCccccCCCCCcceeEEEEEEeCCC-CcccEEEEEEEEEeec
Q 029535 96 LLGWCQIPVNDIGFPPGGSVRNLSYRLRARDG-SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 96 ~IG~~~IpL~~l~~~~~~~~~~~~y~L~~~~G-~k~~G~l~l~v~f~~~ 143 (192)
++|.+.||+..+... +.....||++.+.+. ....|.+ +.+++...
T Consensus 1 ~~G~v~i~~~~~~~~--~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDR--GLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccC--CCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 489999999996532 223456999998543 2345666 68877775
No 163
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.00 E-value=28 Score=33.92 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCcccCCCCCccEEEeEeecCCCCCCeeceEEEEEcccCccccCceeEEEEEEEEcc
Q 029535 22 RIRPFVTITTYPPATTSGDKHCHVYRTRVDDHGGVNPTWGDKFYVPTDCNAFFANRYACIYLQLYTKT 89 (192)
Q Consensus 22 ~~dPYV~v~~y~~~~i~~d~~~~~~rT~v~~~~g~nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~ 89 (192)
..+||+.|.+ .- .+-..+.+. ....+|.||++|.+.+.. + ..+.|.|+...
T Consensus 27 al~~y~~v~v------k~---~~~~~~~~~-~~~~~~~~~~~F~~~v~~-~------~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVEL------KV---KQGAENMTK-VELRIPELRETFHVEVVA-G------GAKNIIVLLKS 77 (694)
T ss_pred hhhhhheecc------ce---eecccccCC-CCCCCchhhhheeeeeec-C------CceEEEEEecC
Confidence 4689988765 11 122233333 347899999999999766 1 36888888764
No 164
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=35.81 E-value=79 Score=22.15 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCeeeEEEEEeCccccCCCCC-------cceeEEEEEEeCC----CCcccEEEEEEEEEe
Q 029535 92 SGQTLLGWCQIPVNDIGFPPGG-------SVRNLSYRLRARD----GSRGHGVVNLAIKLE 141 (192)
Q Consensus 92 ~~d~~IG~~~IpL~~l~~~~~~-------~~~~~~y~L~~~~----G~k~~G~l~l~v~f~ 141 (192)
++++-++-++||..+++....+ --+..++-|+-+. |.+..+.|++.+||+
T Consensus 14 ~g~kRvAYaRIPa~~ilyS~~~~~~~G~~CGk~qt~flk~P~~~~~~~~i~akl~v~lWlG 74 (76)
T PF08150_consen 14 SGNKRVAYARIPAHDILYSEVGEEERGKFCGKIQTLFLKYPGKKGKGWKIPAKLRVYLWLG 74 (76)
T ss_pred eCCeEEEEEEechHHEEecCCChHHcCcccCeeEEEEEECccccCCCCcEeEEEEEEEEcc
Confidence 4678999999999999643321 1111233333332 224456777777764
No 165
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=34.84 E-value=26 Score=20.27 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=12.9
Q ss_pred ceEEeccccccccccccCCcccc
Q 029535 165 LGVNCEEESRLRNEREVSPTYGL 187 (192)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~ 187 (192)
-||-|++.||- | -.-|||-
T Consensus 3 hfvicttdcrr-n---spgtyge 21 (35)
T PF08120_consen 3 HFVICTTDCRR-N---SPGTYGE 21 (35)
T ss_pred eEEEecccccc-C---CCCchhh
Confidence 37899999983 2 2346764
No 166
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=23.52 E-value=1.7e+02 Score=20.13 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=29.9
Q ss_pred CccccCCCCCcceeEEEEEEeCCC--CcccEEEEEEEEEeec
Q 029535 104 VNDIGFPPGGSVRNLSYRLRARDG--SRGHGVVNLAIKLEPV 143 (192)
Q Consensus 104 L~~l~~~~~~~~~~~~y~L~~~~G--~k~~G~l~l~v~f~~~ 143 (192)
+..+-.+++......|..|.+++. .-.+|-|.+++.....
T Consensus 3 lgtVY~qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 3 LGTVYNQPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred eeeeecCCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcC
Confidence 444556677788888999998742 1379999999988875
No 167
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.36 E-value=2.2e+02 Score=22.98 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCeeceEEEEEcccCccccCceeEEEEEEEEccCCCCCeeeEEEEEeCccc
Q 029535 57 NPTWGDKFYVPTDCNAFFANRYACIYLQLYTKTLISGQTLLGWCQIPVNDI 107 (192)
Q Consensus 57 nP~WNE~f~f~v~~~~l~~~~~~~L~veV~d~~~~~~d~~IG~~~IpL~~l 107 (192)
--+||=.|...+...+-. . --.|.+.||..+.+++|.+.|-+.|++...
T Consensus 63 ~iv~n~Pievt~KstsPy-g-WPqivl~vfg~d~~G~d~v~GYg~~hiP~~ 111 (187)
T KOG4027|consen 63 QIVINLPIEVTLKSTSPY-G-WPQIVLNVFGKDHSGKDCVTGYGMLHIPTE 111 (187)
T ss_pred ceEEecceEEEeccCCCC-C-CceEEEEEecCCcCCcceeeeeeeEecCcC
Confidence 357887777766543211 1 147999999999888999999888776644
No 168
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=22.04 E-value=6.2e+02 Score=23.21 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=42.4
Q ss_pred eEEEEEEEEccCCCCCeeeEEEEEeCc-cccCCCCCcceeEEEEEEeCCCCcccEEEEEEEEEee
Q 029535 79 ACIYLQLYTKTLISGQTLLGWCQIPVN-DIGFPPGGSVRNLSYRLRARDGSRGHGVVNLAIKLEP 142 (192)
Q Consensus 79 ~~L~veV~d~~~~~~d~~IG~~~IpL~-~l~~~~~~~~~~~~y~L~~~~G~k~~G~l~l~v~f~~ 142 (192)
.+|++.+|-..- .+..-||.+.+.+. ++... .-....||-++ .+| +..+.|.|++.=..
T Consensus 115 nTLkI~lfKKkL-vkk~hIgdI~InIn~dIIdk--~FPKnkWy~c~-kDG-q~~cRIqLSFhKL~ 174 (508)
T PTZ00447 115 ETLRVDLFTTKL-TKKVHIGQIKIDINASVISK--SFPKNEWFVCF-KDG-QEICKVQMSFYKIQ 174 (508)
T ss_pred ceEEEEEEeccc-cceeEEEEEEecccHHHHhc--cCCccceEEEe-cCC-ceeeeEEEEehhhh
Confidence 589999998765 47789999999987 44322 13345699885 567 78899988876444
Done!