BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029536
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 308 bits (789), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/191 (76%), Positives = 168/191 (87%), Gaps = 5/191 (2%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M TS DE QF SMLLKLINAKNTMEIGV+TGYSLLATALAIP+DGKILA+DI KE+YE G
Sbjct: 61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKR 120
LP+I+KAGV HKIDFREGPALP+LD++I+D EK HG++DF+FVDADKDNY+NYHKR
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKD-----EKNHGSYDFIFVDADKDNYLNYHKR 175
Query: 121 LIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQIS 180
LI+LVKVGGVIGYDNTLW GSVVAPPDA L ++ Y RDFV ELNKALAVDPRIEIC +
Sbjct: 176 LIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLP 235
Query: 181 IADGVTLCRRI 191
+ DG+T+CRRI
Sbjct: 236 VGDGITICRRI 246
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 219 bits (558), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 139/191 (72%), Gaps = 6/191 (3%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M TSP Q S +LKL+NAK T+E+GVFTGYSLL TAL+IPDDGKI A+D +E YE G
Sbjct: 52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKR 120
LP I+KAGV HKI+F E A+ LD L+Q S G++DF FVDADK NY+ YH+R
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQES-----EGSYDFGFVDADKPNYIKYHER 166
Query: 121 LIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQIS 180
L++LVKVGG++ YDNTLWGG+ VA P++++ + R+ V ELNK LA DPRIEI +
Sbjct: 167 LMKLVKVGGIVAYDNTLWGGT-VAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLP 225
Query: 181 IADGVTLCRRI 191
+ DG+T CRR+
Sbjct: 226 LGDGITFCRRL 236
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 12/192 (6%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M +P++AQF ML++L AK +E+G FTGYS LA +LA+PDDG+++ DI + +
Sbjct: 42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKR 120
P ++A HKI R GPAL L L+ + + FDF+F+DADK NY+NY++
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQ------FDFIFIDADKTNYLNYYEL 155
Query: 121 LIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQIS 180
++LV G+I DN W G V+ P D R+ +++LN+ + D R+ + ++
Sbjct: 156 ALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQT-----RE-IKKLNQVIKNDSRVFVSLLA 209
Query: 181 IADGVTLCRRIG 192
IADG+ L + I
Sbjct: 210 IADGMFLVQPIA 221
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 106/190 (55%), Gaps = 16/190 (8%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M SP++AQF +L+ L AK +EIGVF GYS LA AL +P DG+I+A D
Sbjct: 54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKR 120
QKAGVA KI R GPAL L+QL T+ K FD +F+DADK NY Y++
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQL------TQGKPLPEFDLIFIDADKRNYPRYYEI 167
Query: 121 LIELVKVGGVIGYDNTLWGGSV--VAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQ 178
+ L++ GG++ DN LW G V V P +A +Q+ N+ LA D R+ I
Sbjct: 168 GLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQT--------QVLQQFNRDLAQDERVRISV 219
Query: 179 ISIADGVTLC 188
I + DG+TL
Sbjct: 220 IPLGDGMTLA 229
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 13/191 (6%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
MMT ++AQ + L +LI AK +++G FTGYS LA ALA+P DG+++ ++ + E G
Sbjct: 52 MMTC-EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKR 120
P+ ++A HKID R PAL LD+L+ + GTFD VDADK+N Y++R
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLAAGEA------GTFDVAVVDADKENCSAYYER 164
Query: 121 LIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQIS 180
++L++ GG++ LW G V+ PP D+ + V+ LN+ + D R+ I +
Sbjct: 165 CLQLLRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLP 218
Query: 181 IADGVTLCRRI 191
+ DG+TL +I
Sbjct: 219 LGDGLTLAFKI 229
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 106/189 (56%), Gaps = 12/189 (6%)
Query: 2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61
T+P++AQ ++L+KL AK ++IG FTGYS +A LA+P DG ++ D+ ++
Sbjct: 47 QTAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAK 106
Query: 62 PIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRL 121
+KAG++ KI R PA L +LI + + +D +++DADK N Y++
Sbjct: 107 EYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ------YDLIYIDADKANTDLYYEES 160
Query: 122 IELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISI 181
++L++ GG+I DN L G V + + E+ +R F Q++ K D R++ I I
Sbjct: 161 LKLLREGGLIAVDNVLRRGQVA--DEENQSENNQLIRLFNQKVYK----DERVDXILIPI 214
Query: 182 ADGVTLCRR 190
DG+TL R+
Sbjct: 215 GDGLTLARK 223
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 11/195 (5%)
Query: 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKG 60
M SP+E QF ++L K+ AK +EIG FTGYS L A A+P+DGKIL D+++E
Sbjct: 42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
Query: 61 LPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTF-----DFVFVDADKDNYV 115
++ G+ +KI + G AL L LI S+ F D F+DADK+NY
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161
Query: 116 NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIE 175
NY+ +++L+K GG++ DN LW GSV ADL H +++ N+ + D ++
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSV-----ADLS-HQEPSTVGIRKFNELVYNDSLVD 215
Query: 176 ICQISIADGVTLCRR 190
+ + IADGV+L R+
Sbjct: 216 VSLVPIADGVSLVRK 230
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
+ ++ QF ++L++L AK +EIG GYS + A +P DG++L L+ H +
Sbjct: 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 64 IQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIE 123
+Q AGV ++ REGPAL L+ L + + FD +F+DADK N +Y + +
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECPA---------FDLIFIDADKPNNPHYLRWALR 158
Query: 124 LVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIA- 182
+ G +I DN + G VV P A DE +R F++ +PR+ +
Sbjct: 159 YSRPGTLIIGDNVVRDGEVVNPQSA--DERVQGVRQFIE----XXGAEPRLTATALQTVG 212
Query: 183 ----DGVTLC 188
DG TL
Sbjct: 213 TKGWDGFTLA 222
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 13/171 (7%)
Query: 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI 63
SP + +F +L+++ A+N +EIG GYS + A + G+++ L+ +++H +
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 64 IQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIE 123
I++A + +++ R G AL L Q+ EKY FDF+F+DADK N Y + ++
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQI------ENEKYE-PFDFIFIDADKQNNPAYFEWALK 155
Query: 124 LVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRI 174
L + G VI DN + G V+ + D +R F + +A +PR+
Sbjct: 156 LSRPGTVIIGDNVVREGEVI--DNTSNDPRVQGIRRFYE----LIAAEPRV 200
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI 73
LLK +EIG GYS + A A+P+ I++++ + YE+ ++ G+ +I
Sbjct: 49 LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 74 DFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133
+ G AL L ++L + + FD +F+DA K Y + V+ GG+I
Sbjct: 108 ELLFGDALQLGEKL---------ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILS 158
Query: 134 DNTLWGGSVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEICQISIADGVTLC 188
DN L+ G +VA D + H L + N+ L P+ + + DG+ +
Sbjct: 159 DNVLFRG-LVAETDIEHKRH-KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L +++ ++ ++
Sbjct: 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 105
Query: 67 AGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE-- 123
AG+ K+ G + L+ QL K+KY T D VF+D KD Y+ L+E
Sbjct: 106 AGLQDKVTILNGASQDLIPQL-------KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKC 157
Query: 124 -LVKVGGVIGYDNTLWGGS 141
L++ G V+ DN + G+
Sbjct: 158 GLLRKGTVLLADNVIVPGT 176
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L ++I + ++
Sbjct: 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 67 AGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE-- 123
AG+ K+ G + L+ QL K+KY T D VF+D KD Y+ L+E
Sbjct: 106 AGLQDKVTILNGASQDLIPQL-------KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKC 157
Query: 124 -LVKVGGVIGYDNTLWGGS 141
L++ G V+ DN + G+
Sbjct: 158 GLLRKGTVLLADNVIVPGT 176
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66
+ Q +++ + +E+G + GYS + A + ++L +++ ++ ++
Sbjct: 48 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF 107
Query: 67 AGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE-- 123
AG+ K+ G + L+ QL K+KY T D VF+D KD Y+ L+E
Sbjct: 108 AGLQDKVTILNGASQDLIPQL-------KKKYDVDTLDMVFLDHWKDRYLP-DTLLLEKC 159
Query: 124 -LVKVGGVIGYDNTLWGGS 141
L++ G V+ DN + G+
Sbjct: 160 GLLRKGTVLLADNVIVPGT 178
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AGV K+ G + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 121
Query: 84 LDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGG 140
+ QL K+KY T D VF+D KD Y+ L E L++ G V+ DN
Sbjct: 122 IPQL-------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN----- 169
Query: 141 SVVAPPDADLDEH--------------FLYLRDFVQELNKALAVDP 172
V+ P D H FL R+ V L KA+ P
Sbjct: 170 -VICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGP 214
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 30/162 (18%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AGV K+ G + +
Sbjct: 65 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 124
Query: 84 LDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGG 140
+ QL K+KY T D VF+D KD Y+ L E L++ G V+ DN
Sbjct: 125 IPQL-------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN----- 172
Query: 141 SVVAPPDADLDEH--------------FLYLRDFVQELNKAL 168
V+ P D H FL R+ V L KA+
Sbjct: 173 -VICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAI 213
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83
+E+G + GYS + A + +++ ++I + ++ AG+ K+ G + +
Sbjct: 62 LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDI 121
Query: 84 LDQLIQDVSSTKEKYH-GTFDFVFVDADKDNYVNYHKRLIE--LVKVGGVIGYDNTLWGG 140
+ QL K+KY T D VF+D KD Y+ L E L++ G V+ DN
Sbjct: 122 IPQL-------KKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADN----- 169
Query: 141 SVVAPPDADLDEH--------------FLYLRDFVQELNKALAVDP 172
V+ P D H FL R+ V L KA+ P
Sbjct: 170 -VICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGP 214
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK 72
L++ N KN +EIG GYS A +I DD + ++ + + + ++
Sbjct: 65 QLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHFENQ 123
Query: 73 IDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132
+ EG AL + + V +D +F+DA K + + L+K G++
Sbjct: 124 VRIIEGNALEQFENVNDKV----------YDXIFIDAAKAQSKKFFEIYTPLLKHQGLVI 173
Query: 133 YDNTLWGGSV 142
DN L+ G V
Sbjct: 174 TDNVLYHGFV 183
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPII 64
P ++ F +M+L + ++ GV +G A A+ GK+ A + +E + +
Sbjct: 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL 157
Query: 65 QKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDA---DKDNYVNYHKRL 121
K G+ ++ + ++D+S FD VDA D + NY +
Sbjct: 158 TKWGLIERVTIK-----------VRDISE-------GFDEKDVDALFLDVPDPWNYIDKC 199
Query: 122 IELVKVGG 129
E +K GG
Sbjct: 200 WEALKGGG 207
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 121 LIELVKVGGVIGYDNTLWGGSVVAP--PDADLDEHFLYLRDFVQELNKALAVDPRI 174
LIEL+K V+ D T W + P+A +++ +YL +Q L + L+ +PR+
Sbjct: 413 LIELMKDPSVVVRDTTAWTVGRICELLPEAAIND--VYLAPLLQCLIEGLSAEPRV 466
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 9 QFFSMLLKLINAKNTM---EIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ 65
M+ +L++ K M EIG GY TA + +DG +++++ E EK ++
Sbjct: 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR 123
Query: 66 KAG 68
K G
Sbjct: 124 KLG 126
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 58 EKGLP-IIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFD 103
EKGLP + + G + F EGP + D D K +HG D
Sbjct: 343 EKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 36 ATALAIPDDGKILALDITKEHYE---KGLPIIQKAGVAHKIDFREGPALPLLD 85
A + + +DG I+ ++ K YE KG+ + AG + F+EG ++D
Sbjct: 212 AKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIID 264
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77
I A ++IG +G L+ ALA D I ALD +K E L I A + +I +
Sbjct: 42 ITAGTCIDIG--SGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQ 99
Query: 78 GPA--LPLLDQ 86
G +P+ D
Sbjct: 100 GDVHNIPIEDN 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,993,434
Number of Sequences: 62578
Number of extensions: 258769
Number of successful extensions: 616
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 25
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)