Query 029536
Match_columns 192
No_of_seqs 163 out of 2579
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 14:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 5.4E-40 1.2E-44 253.7 19.6 179 1-191 27-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 2E-38 4.3E-43 250.9 22.4 186 1-191 61-246 (247)
3 PLN02476 O-methyltransferase 100.0 6.9E-37 1.5E-41 245.0 22.3 179 1-191 100-278 (278)
4 COG4122 Predicted O-methyltran 100.0 2.3E-36 4.9E-41 233.7 20.8 174 5-192 45-219 (219)
5 PLN02781 Probable caffeoyl-CoA 100.0 1.1E-35 2.3E-40 234.9 22.2 184 1-191 50-233 (234)
6 KOG1663 O-methyltransferase [S 100.0 7.3E-35 1.6E-39 223.3 18.7 183 1-191 55-237 (237)
7 PF12847 Methyltransf_18: Meth 99.8 4.3E-18 9.3E-23 119.2 10.0 104 19-135 1-111 (112)
8 PRK04457 spermidine synthase; 99.7 9.8E-16 2.1E-20 123.0 18.0 113 10-134 57-176 (262)
9 COG2242 CobL Precorrin-6B meth 99.7 9.9E-16 2.1E-20 115.2 16.6 118 5-137 20-137 (187)
10 TIGR02469 CbiT precorrin-6Y C5 99.7 3.4E-16 7.4E-21 111.1 13.0 111 11-134 11-121 (124)
11 PRK00377 cbiT cobalt-precorrin 99.7 8.8E-16 1.9E-20 118.5 14.1 110 16-136 37-146 (198)
12 PRK08287 cobalt-precorrin-6Y C 99.7 3.1E-15 6.7E-20 114.3 17.0 111 10-136 22-132 (187)
13 PLN03075 nicotianamine synthas 99.7 6.5E-16 1.4E-20 124.9 12.6 119 4-135 109-233 (296)
14 PRK13942 protein-L-isoaspartat 99.7 1.2E-15 2.6E-20 119.0 12.3 116 3-134 60-175 (212)
15 TIGR00138 gidB 16S rRNA methyl 99.7 1E-15 2.2E-20 116.5 11.4 103 16-134 39-141 (181)
16 PRK13944 protein-L-isoaspartat 99.7 1.6E-15 3.5E-20 117.7 12.4 105 15-134 68-172 (205)
17 COG2226 UbiE Methylase involve 99.7 2.6E-15 5.6E-20 118.1 13.2 106 19-138 51-159 (238)
18 PF01209 Ubie_methyltran: ubiE 99.7 1.2E-15 2.5E-20 120.5 11.1 111 14-137 42-155 (233)
19 PRK00107 gidB 16S rRNA methylt 99.6 3.1E-15 6.7E-20 114.4 12.4 100 19-134 45-144 (187)
20 PF13847 Methyltransf_31: Meth 99.6 1.6E-15 3.4E-20 112.2 10.4 108 18-137 2-112 (152)
21 TIGR00080 pimt protein-L-isoas 99.6 2.8E-15 6.2E-20 117.0 12.2 114 5-134 63-176 (215)
22 PF05175 MTS: Methyltransferas 99.6 2.2E-15 4.9E-20 113.6 11.1 112 6-133 19-138 (170)
23 PRK00811 spermidine synthase; 99.6 1.6E-14 3.4E-19 117.3 16.2 107 16-134 73-190 (283)
24 PRK07402 precorrin-6B methylas 99.6 1.2E-14 2.7E-19 111.8 14.2 119 4-136 25-143 (196)
25 PF13578 Methyltransf_24: Meth 99.6 3.8E-16 8.1E-21 108.7 4.9 102 24-136 1-106 (106)
26 PRK01581 speE spermidine synth 99.6 3.1E-14 6.7E-19 117.8 16.4 108 15-134 146-267 (374)
27 PRK11036 putative S-adenosyl-L 99.6 9.4E-15 2E-19 116.9 12.9 103 18-134 43-148 (255)
28 TIGR03533 L3_gln_methyl protei 99.6 3.8E-14 8.2E-19 115.1 16.5 117 4-134 102-250 (284)
29 TIGR02752 MenG_heptapren 2-hep 99.6 1.9E-14 4.2E-19 113.2 14.2 108 16-136 42-152 (231)
30 PRK00121 trmB tRNA (guanine-N( 99.6 6.7E-15 1.4E-19 114.0 10.9 117 5-134 28-155 (202)
31 COG2230 Cfa Cyclopropane fatty 99.6 1.8E-14 3.9E-19 115.5 13.3 121 2-139 52-180 (283)
32 PLN02366 spermidine synthase 99.6 9E-14 2E-18 113.8 17.3 107 17-134 89-205 (308)
33 COG2519 GCD14 tRNA(1-methylade 99.6 1.3E-14 2.8E-19 113.8 10.9 116 3-133 78-193 (256)
34 COG2518 Pcm Protein-L-isoaspar 99.6 1.6E-14 3.4E-19 110.9 10.9 110 5-133 58-167 (209)
35 PRK14901 16S rRNA methyltransf 99.6 9.4E-14 2E-18 119.0 17.0 159 6-190 239-430 (434)
36 PLN02233 ubiquinone biosynthes 99.6 3.9E-14 8.4E-19 113.8 13.3 111 16-138 70-185 (261)
37 PF13659 Methyltransf_26: Meth 99.6 1.8E-14 3.9E-19 101.5 9.9 101 21-133 2-113 (117)
38 TIGR00417 speE spermidine synt 99.6 1.8E-13 4E-18 110.4 16.9 106 17-134 70-185 (270)
39 PLN02244 tocopherol O-methyltr 99.6 6.8E-14 1.5E-18 116.4 14.3 106 18-137 117-225 (340)
40 COG4123 Predicted O-methyltran 99.6 3.1E-14 6.6E-19 112.2 11.0 115 8-133 33-168 (248)
41 PRK15128 23S rRNA m(5)C1962 me 99.6 3.4E-13 7.5E-18 114.0 17.8 110 16-135 217-339 (396)
42 PRK11805 N5-glutamine S-adenos 99.6 5.8E-14 1.3E-18 115.2 12.6 117 4-134 114-262 (307)
43 PRK14902 16S rRNA methyltransf 99.6 1.5E-13 3.2E-18 118.2 15.2 120 5-136 236-380 (444)
44 PF01135 PCMT: Protein-L-isoas 99.5 2.8E-14 6.2E-19 110.7 9.5 113 5-133 58-170 (209)
45 PRK14903 16S rRNA methyltransf 99.5 3.3E-13 7E-18 115.5 16.8 120 6-137 224-368 (431)
46 PF02353 CMAS: Mycolic acid cy 99.5 4.1E-14 8.9E-19 114.2 10.5 118 4-138 44-169 (273)
47 PRK00312 pcm protein-L-isoaspa 99.5 8.2E-14 1.8E-18 108.5 11.7 113 3-134 62-174 (212)
48 TIGR00091 tRNA (guanine-N(7)-) 99.5 4E-13 8.6E-18 103.4 15.0 104 19-133 16-130 (194)
49 PF08704 GCD14: tRNA methyltra 99.5 8.6E-14 1.9E-18 110.3 11.5 118 4-133 25-144 (247)
50 PRK14904 16S rRNA methyltransf 99.5 4.2E-13 9.1E-18 115.4 16.2 116 7-136 238-378 (445)
51 PRK11873 arsM arsenite S-adeno 99.5 1.5E-13 3.4E-18 110.8 12.4 111 16-139 74-187 (272)
52 PRK11207 tellurite resistance 99.5 1.5E-13 3.2E-18 106.0 11.6 101 16-133 27-132 (197)
53 TIGR00536 hemK_fam HemK family 99.5 2.1E-13 4.5E-18 110.9 12.7 116 5-134 96-243 (284)
54 TIGR00740 methyltransferase, p 99.5 3.9E-13 8.4E-18 106.5 14.0 106 19-138 53-164 (239)
55 TIGR00477 tehB tellurite resis 99.5 2.1E-13 4.5E-18 105.0 12.0 107 9-134 21-132 (195)
56 PRK15451 tRNA cmo(5)U34 methyl 99.5 1.8E-13 3.8E-18 109.1 11.7 105 19-137 56-166 (247)
57 PRK00517 prmA ribosomal protei 99.5 2.3E-12 5E-17 102.9 18.1 110 6-137 105-215 (250)
58 TIGR00563 rsmB ribosomal RNA s 99.5 8.7E-13 1.9E-17 112.9 16.7 121 6-137 225-370 (426)
59 COG2227 UbiG 2-polyprenyl-3-me 99.5 1E-13 2.3E-18 107.9 9.8 112 9-137 46-163 (243)
60 smart00828 PKS_MT Methyltransf 99.5 9.7E-14 2.1E-18 108.7 9.8 103 21-137 1-106 (224)
61 COG1092 Predicted SAM-dependen 99.5 2.7E-13 6E-18 113.6 12.9 118 11-138 209-339 (393)
62 PRK10901 16S rRNA methyltransf 99.5 8.4E-13 1.8E-17 113.0 16.2 118 6-136 231-373 (427)
63 PLN02396 hexaprenyldihydroxybe 99.5 1.9E-13 4.2E-18 112.5 11.4 104 19-137 131-237 (322)
64 PLN02823 spermine synthase 99.5 1.3E-12 2.8E-17 108.1 16.1 107 16-134 100-219 (336)
65 PRK10909 rsmD 16S rRNA m(2)G96 99.5 9.9E-13 2.1E-17 101.4 14.5 111 10-134 44-158 (199)
66 TIGR00446 nop2p NOL1/NOP2/sun 99.5 7.1E-13 1.5E-17 106.6 14.0 115 9-136 61-200 (264)
67 PF07279 DUF1442: Protein of u 99.5 9.7E-13 2.1E-17 100.8 13.9 156 3-189 25-185 (218)
68 PRK11783 rlmL 23S rRNA m(2)G24 99.5 4.2E-13 9E-18 121.1 14.0 110 14-136 533-657 (702)
69 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.7E-18 95.1 8.0 93 23-129 1-101 (101)
70 PRK01683 trans-aconitate 2-met 99.5 2.5E-13 5.5E-18 108.6 10.8 97 18-134 30-129 (258)
71 TIGR00406 prmA ribosomal prote 99.5 7.5E-13 1.6E-17 107.8 13.6 116 6-137 145-261 (288)
72 COG2264 PrmA Ribosomal protein 99.5 1.5E-12 3.1E-17 105.3 15.0 104 19-137 162-265 (300)
73 PRK15001 SAM-dependent 23S rib 99.5 2.8E-13 6E-18 113.6 11.0 114 6-134 216-339 (378)
74 PRK14103 trans-aconitate 2-met 99.5 2.4E-13 5.1E-18 108.8 10.2 95 18-134 28-125 (255)
75 PF08241 Methyltransf_11: Meth 99.5 1.7E-13 3.6E-18 92.4 8.0 92 24-133 1-95 (95)
76 PRK01544 bifunctional N5-gluta 99.5 4.9E-13 1.1E-17 116.5 12.9 101 20-134 139-268 (506)
77 COG4106 Tam Trans-aconitate me 99.5 6.3E-14 1.4E-18 107.2 6.4 97 17-133 28-127 (257)
78 TIGR03534 RF_mod_PrmC protein- 99.5 8.4E-13 1.8E-17 104.9 13.2 115 5-134 71-216 (251)
79 COG0421 SpeE Spermidine syntha 99.5 1.9E-12 4.1E-17 104.6 15.3 107 16-134 73-189 (282)
80 TIGR00537 hemK_rel_arch HemK-r 99.5 9.3E-13 2E-17 99.9 12.8 110 7-135 7-140 (179)
81 PF03602 Cons_hypoth95: Conser 99.5 1.1E-12 2.5E-17 99.9 12.2 121 4-134 26-152 (183)
82 PRK08317 hypothetical protein; 99.5 4.2E-12 9E-17 99.6 15.6 118 10-141 10-130 (241)
83 TIGR00095 RNA methyltransferas 99.5 3.7E-12 7.9E-17 97.7 14.8 115 10-134 40-158 (189)
84 PRK04266 fibrillarin; Provisio 99.5 9.8E-13 2.1E-17 103.4 11.4 107 15-134 68-175 (226)
85 PF06325 PrmA: Ribosomal prote 99.5 3.3E-12 7.2E-17 103.8 14.7 147 5-191 146-294 (295)
86 TIGR03704 PrmC_rel_meth putati 99.5 2E-12 4.4E-17 103.3 13.3 114 6-134 69-215 (251)
87 PRK13943 protein-L-isoaspartat 99.4 1.5E-12 3.3E-17 107.2 12.7 103 16-134 77-179 (322)
88 COG2890 HemK Methylase of poly 99.4 1.5E-12 3.3E-17 105.4 12.0 114 5-134 94-237 (280)
89 PF08242 Methyltransf_12: Meth 99.4 3.6E-14 7.8E-19 97.3 1.7 96 24-131 1-99 (99)
90 PRK14966 unknown domain/N5-glu 99.4 2E-12 4.4E-17 109.0 12.3 116 4-133 235-379 (423)
91 PRK15068 tRNA mo(5)U34 methylt 99.4 2.2E-12 4.8E-17 106.5 12.2 107 18-139 121-230 (322)
92 TIGR02716 C20_methyl_CrtF C-20 99.4 3E-12 6.4E-17 105.1 12.9 108 16-139 146-258 (306)
93 PRK14968 putative methyltransf 99.4 4.2E-12 9.1E-17 96.5 12.8 110 9-134 13-147 (188)
94 PRK00216 ubiE ubiquinone/menaq 99.4 2.9E-12 6.4E-17 100.7 12.2 106 19-136 51-159 (239)
95 PRK12335 tellurite resistance 99.4 1.7E-12 3.6E-17 105.7 11.1 100 16-133 117-221 (287)
96 PF10672 Methyltrans_SAM: S-ad 99.4 2.8E-12 6.1E-17 103.7 12.3 110 14-134 118-237 (286)
97 PRK09328 N5-glutamine S-adenos 99.4 2.5E-12 5.4E-17 103.7 11.9 115 5-134 91-237 (275)
98 PTZ00098 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 104.8 10.5 106 16-138 49-159 (263)
99 PF01564 Spermine_synth: Sperm 99.4 3.1E-12 6.6E-17 101.9 12.2 108 15-134 72-190 (246)
100 PRK14121 tRNA (guanine-N(7)-)- 99.4 4.1E-12 9E-17 106.4 13.2 103 19-133 122-233 (390)
101 PF04989 CmcI: Cephalosporin h 99.4 3.7E-12 8.1E-17 97.8 11.5 163 4-177 17-186 (206)
102 PRK03522 rumB 23S rRNA methylu 99.4 9.2E-12 2E-16 102.6 14.5 101 18-133 172-272 (315)
103 COG2813 RsmC 16S RNA G1207 met 99.4 2.9E-12 6.4E-17 103.2 11.0 113 4-133 144-264 (300)
104 PRK09489 rsmC 16S ribosomal RN 99.4 3.2E-12 6.8E-17 106.3 11.6 111 5-133 183-301 (342)
105 TIGR01177 conserved hypothetic 99.4 4.1E-12 9E-17 105.3 12.3 116 3-134 166-293 (329)
106 PLN02336 phosphoethanolamine N 99.4 4.1E-12 8.9E-17 110.1 12.6 113 9-138 257-372 (475)
107 PRK14967 putative methyltransf 99.4 7.4E-12 1.6E-16 98.3 12.9 99 18-133 35-157 (223)
108 PF03848 TehB: Tellurite resis 99.4 3E-12 6.5E-17 97.8 10.3 112 4-134 16-132 (192)
109 PRK06922 hypothetical protein; 99.4 3.7E-12 8.1E-17 112.1 12.1 113 11-136 410-538 (677)
110 TIGR02072 BioC biotin biosynth 99.4 5.9E-12 1.3E-16 98.9 12.1 102 18-137 33-137 (240)
111 PF05401 NodS: Nodulation prot 99.4 1.7E-12 3.7E-17 98.6 8.5 98 20-136 44-147 (201)
112 PRK03612 spermidine synthase; 99.4 4.2E-12 9.2E-17 111.1 12.1 106 17-134 295-414 (521)
113 PRK10258 biotin biosynthesis p 99.4 7.2E-12 1.6E-16 99.9 11.7 97 19-136 42-141 (251)
114 PRK05134 bifunctional 3-demeth 99.4 1.5E-11 3.2E-16 96.9 12.7 115 6-136 35-152 (233)
115 TIGR03587 Pse_Me-ase pseudamin 99.4 6E-12 1.3E-16 97.6 10.2 104 14-139 38-146 (204)
116 TIGR00452 methyltransferase, p 99.3 1.2E-11 2.6E-16 101.6 11.8 107 18-139 120-229 (314)
117 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.9E-11 6.2E-16 104.0 14.4 120 2-134 276-399 (443)
118 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.6E-11 3.5E-16 95.6 11.4 106 17-137 37-145 (223)
119 PRK00536 speE spermidine synth 99.3 2.1E-11 4.6E-16 97.4 12.3 101 14-134 67-170 (262)
120 TIGR02085 meth_trns_rumB 23S r 99.3 4.6E-11 1E-15 100.6 14.9 117 2-134 212-333 (374)
121 TIGR00479 rumA 23S rRNA (uraci 99.3 4.3E-11 9.3E-16 102.6 14.9 102 19-133 292-394 (431)
122 PF02390 Methyltransf_4: Putat 99.3 5.3E-11 1.1E-15 91.6 13.5 101 22-133 20-131 (195)
123 PLN02490 MPBQ/MSBQ methyltrans 99.3 2.4E-11 5.1E-16 100.7 12.0 100 19-135 113-215 (340)
124 PRK11705 cyclopropane fatty ac 99.3 2.7E-11 5.9E-16 102.2 12.5 111 6-137 151-269 (383)
125 TIGR03438 probable methyltrans 99.3 2.9E-11 6.3E-16 99.1 12.3 109 19-134 63-176 (301)
126 KOG1270 Methyltransferases [Co 99.3 3.2E-12 6.9E-17 100.5 6.1 100 21-138 91-198 (282)
127 COG0742 N6-adenine-specific me 99.3 9.2E-11 2E-15 88.8 13.2 121 4-135 27-154 (187)
128 PTZ00146 fibrillarin; Provisio 99.3 8.2E-11 1.8E-15 95.1 13.8 105 18-134 131-236 (293)
129 TIGR02021 BchM-ChlM magnesium 99.3 4.5E-11 9.8E-16 93.5 12.0 99 18-134 54-157 (219)
130 KOG1540 Ubiquinone biosynthesi 99.3 4.5E-11 9.7E-16 93.7 11.6 106 19-136 100-215 (296)
131 PF13489 Methyltransf_23: Meth 99.3 3.3E-11 7.1E-16 89.0 10.6 105 8-138 10-118 (161)
132 PRK11088 rrmA 23S rRNA methylt 99.3 6.5E-11 1.4E-15 95.6 13.1 94 19-134 85-180 (272)
133 PF05891 Methyltransf_PK: AdoM 99.3 1.1E-11 2.4E-16 95.6 7.6 129 6-149 37-177 (218)
134 KOG2904 Predicted methyltransf 99.3 3.3E-11 7.2E-16 95.3 10.2 119 4-134 127-284 (328)
135 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.5E-11 7.5E-16 93.9 10.3 99 19-134 34-151 (213)
136 TIGR01983 UbiG ubiquinone bios 99.3 1.1E-10 2.3E-15 91.3 13.0 114 8-136 30-150 (224)
137 PRK07580 Mg-protoporphyrin IX 99.3 1.3E-10 2.9E-15 91.1 13.0 98 18-133 62-164 (230)
138 PRK11188 rrmJ 23S rRNA methylt 99.3 8.5E-11 1.8E-15 91.5 11.2 99 18-134 50-164 (209)
139 KOG1271 Methyltransferases [Ge 99.2 2.1E-10 4.5E-15 85.9 12.0 106 20-138 68-184 (227)
140 PRK11933 yebU rRNA (cytosine-C 99.2 2.5E-10 5.5E-15 98.4 14.0 118 8-137 100-244 (470)
141 PLN02336 phosphoethanolamine N 99.2 1.2E-10 2.6E-15 100.9 11.7 106 17-138 35-145 (475)
142 COG0220 Predicted S-adenosylme 99.2 2.8E-10 6.1E-15 89.3 12.5 102 21-133 50-162 (227)
143 PRK13255 thiopurine S-methyltr 99.2 9.7E-11 2.1E-15 91.7 10.0 97 19-132 37-152 (218)
144 PLN02672 methionine S-methyltr 99.2 2.3E-10 5E-15 106.3 13.4 94 5-110 100-212 (1082)
145 PRK05031 tRNA (uracil-5-)-meth 99.2 6.7E-10 1.4E-14 93.2 14.9 125 2-133 186-318 (362)
146 PRK04338 N(2),N(2)-dimethylgua 99.2 5.4E-10 1.2E-14 94.2 14.2 99 21-134 59-157 (382)
147 cd02440 AdoMet_MTases S-adenos 99.2 2.7E-10 5.9E-15 76.7 9.9 99 22-134 1-103 (107)
148 smart00650 rADc Ribosomal RNA 99.2 2.9E-10 6.4E-15 85.5 10.8 112 17-146 11-124 (169)
149 PF08003 Methyltransf_9: Prote 99.2 3.7E-10 8E-15 91.2 11.5 110 16-140 112-224 (315)
150 KOG4300 Predicted methyltransf 99.2 8.8E-11 1.9E-15 89.5 7.3 101 21-135 78-182 (252)
151 TIGR00438 rrmJ cell division p 99.2 3.1E-10 6.7E-15 86.8 10.5 105 12-134 25-145 (188)
152 smart00138 MeTrc Methyltransfe 99.2 1.5E-10 3.2E-15 93.2 8.4 105 19-135 99-242 (264)
153 TIGR00308 TRM1 tRNA(guanine-26 99.1 1.4E-09 2.9E-14 91.5 13.8 102 21-135 46-147 (374)
154 PRK05785 hypothetical protein; 99.1 6.7E-10 1.5E-14 87.4 11.3 97 10-129 41-141 (226)
155 PF02475 Met_10: Met-10+ like- 99.1 4.3E-10 9.2E-15 86.7 9.9 102 17-133 99-200 (200)
156 TIGR02143 trmA_only tRNA (urac 99.1 2.4E-09 5.1E-14 89.6 14.8 125 2-133 177-309 (353)
157 PRK06202 hypothetical protein; 99.1 2.7E-10 5.8E-15 89.9 8.3 104 17-138 58-169 (232)
158 PHA03412 putative methyltransf 99.1 2.1E-09 4.6E-14 84.4 12.6 103 17-138 47-166 (241)
159 PF10294 Methyltransf_16: Puta 99.1 1.5E-09 3.3E-14 82.0 11.2 109 16-135 42-156 (173)
160 KOG2899 Predicted methyltransf 99.1 4.3E-10 9.4E-15 87.6 8.3 110 17-138 56-212 (288)
161 PF09445 Methyltransf_15: RNA 99.1 3.9E-10 8.4E-15 84.0 7.2 78 21-110 1-78 (163)
162 COG2263 Predicted RNA methylas 99.1 4.4E-09 9.5E-14 79.4 12.7 102 4-124 27-136 (198)
163 PHA03411 putative methyltransf 99.1 2.5E-09 5.4E-14 85.8 11.7 95 19-133 64-181 (279)
164 PLN02585 magnesium protoporphy 99.1 3E-09 6.4E-14 87.6 12.3 96 19-133 144-248 (315)
165 COG3963 Phospholipid N-methylt 99.1 2.8E-09 6.2E-14 78.7 10.5 118 3-133 32-154 (194)
166 COG2521 Predicted archaeal met 99.0 1.1E-09 2.4E-14 85.0 8.1 103 18-132 133-242 (287)
167 KOG2915 tRNA(1-methyladenosine 99.0 2.1E-09 4.5E-14 85.1 9.6 112 9-132 95-207 (314)
168 COG2265 TrmA SAM-dependent met 99.0 7.1E-09 1.5E-13 88.6 13.3 118 2-133 272-394 (432)
169 PRK11727 23S rRNA mA1618 methy 99.0 3.1E-09 6.8E-14 87.5 10.7 83 19-110 114-198 (321)
170 PF01170 UPF0020: Putative RNA 99.0 6.1E-09 1.3E-13 79.1 10.6 120 3-134 12-150 (179)
171 COG0144 Sun tRNA and rRNA cyto 99.0 1E-08 2.3E-13 85.8 12.8 123 5-137 142-290 (355)
172 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 1.7E-08 3.7E-13 82.0 13.3 120 6-136 72-220 (283)
173 COG1041 Predicted DNA modifica 98.9 8.8E-09 1.9E-13 84.7 10.8 117 2-134 180-309 (347)
174 COG4976 Predicted methyltransf 98.9 1.2E-09 2.5E-14 84.7 5.3 108 8-134 111-224 (287)
175 KOG2361 Predicted methyltransf 98.9 1.9E-09 4.1E-14 84.0 6.2 107 21-137 73-185 (264)
176 PTZ00338 dimethyladenosine tra 98.9 1.7E-08 3.6E-13 82.4 12.1 80 15-111 32-111 (294)
177 PF07021 MetW: Methionine bios 98.9 7.4E-09 1.6E-13 78.6 8.9 99 18-136 12-112 (193)
178 KOG2730 Methylase [General fun 98.9 4.1E-09 9E-14 81.1 7.1 87 13-110 88-174 (263)
179 PRK01544 bifunctional N5-gluta 98.9 3.2E-08 6.8E-13 86.5 13.4 103 19-133 347-460 (506)
180 KOG3191 Predicted N6-DNA-methy 98.9 2.5E-08 5.5E-13 74.7 10.4 102 18-134 42-167 (209)
181 PF00891 Methyltransf_2: O-met 98.9 6.4E-09 1.4E-13 82.4 7.5 99 17-139 98-203 (241)
182 TIGR02081 metW methionine bios 98.9 8.2E-09 1.8E-13 79.3 7.9 89 19-127 13-104 (194)
183 PF02527 GidB: rRNA small subu 98.9 2.2E-08 4.8E-13 76.3 10.0 96 22-133 51-146 (184)
184 COG2520 Predicted methyltransf 98.9 3E-08 6.6E-13 81.9 11.4 108 17-139 186-293 (341)
185 PRK13256 thiopurine S-methyltr 98.9 3.1E-08 6.8E-13 77.7 10.4 117 19-147 43-175 (226)
186 KOG1661 Protein-L-isoaspartate 98.8 2.7E-08 5.8E-13 76.2 9.4 112 7-133 69-191 (237)
187 PRK14896 ksgA 16S ribosomal RN 98.8 5.9E-08 1.3E-12 77.9 11.9 88 4-111 14-101 (258)
188 PF05724 TPMT: Thiopurine S-me 98.8 7.6E-09 1.7E-13 81.0 6.6 115 4-133 23-153 (218)
189 KOG1562 Spermidine synthase [A 98.8 5.7E-08 1.2E-12 77.9 10.1 152 14-190 116-282 (337)
190 COG4262 Predicted spermidine s 98.8 1.3E-07 2.8E-12 78.0 11.8 105 18-134 288-406 (508)
191 PRK00050 16S rRNA m(4)C1402 me 98.8 6.2E-08 1.3E-12 78.9 10.0 81 19-110 19-99 (296)
192 PF12147 Methyltransf_20: Puta 98.8 1.8E-07 3.8E-12 75.2 12.3 117 14-139 130-253 (311)
193 KOG1499 Protein arginine N-met 98.8 3.1E-08 6.7E-13 81.2 8.0 104 16-134 57-166 (346)
194 PRK00274 ksgA 16S ribosomal RN 98.7 1E-07 2.2E-12 77.1 10.6 93 11-122 34-126 (272)
195 KOG3010 Methyltransferase [Gen 98.7 1.8E-08 3.9E-13 78.7 4.8 110 9-133 22-135 (261)
196 PF06080 DUF938: Protein of un 98.7 1.1E-07 2.3E-12 73.2 9.0 134 7-146 11-153 (204)
197 PF05958 tRNA_U5-meth_tr: tRNA 98.7 1.5E-07 3.3E-12 78.8 10.7 116 2-121 176-299 (352)
198 TIGR00755 ksgA dimethyladenosi 98.7 2.6E-07 5.7E-12 73.9 11.6 63 15-83 25-87 (253)
199 COG0357 GidB Predicted S-adeno 98.7 1E-07 2.2E-12 74.1 8.4 98 20-132 68-165 (215)
200 PF03059 NAS: Nicotianamine sy 98.7 1.4E-07 3E-12 76.0 9.4 104 19-134 120-229 (276)
201 PF05711 TylF: Macrocin-O-meth 98.7 5.1E-08 1.1E-12 77.4 6.7 125 4-138 55-215 (248)
202 PF05185 PRMT5: PRMT5 arginine 98.7 1.6E-07 3.5E-12 80.8 10.2 100 20-132 187-294 (448)
203 PF03291 Pox_MCEL: mRNA cappin 98.6 1.1E-07 2.4E-12 78.8 7.8 116 9-133 48-184 (331)
204 PRK04148 hypothetical protein; 98.6 8.8E-07 1.9E-11 63.9 10.4 98 7-126 4-102 (134)
205 KOG1541 Predicted protein carb 98.6 8E-08 1.7E-12 74.2 4.9 96 19-134 50-159 (270)
206 KOG3420 Predicted RNA methylas 98.6 3.7E-07 8.1E-12 66.2 7.8 77 18-110 47-123 (185)
207 PLN02232 ubiquinone biosynthes 98.5 4E-07 8.8E-12 67.9 7.6 78 48-137 1-83 (160)
208 COG0030 KsgA Dimethyladenosine 98.5 4.7E-06 1E-10 66.5 12.9 87 18-122 29-116 (259)
209 PRK10742 putative methyltransf 98.5 1.2E-06 2.7E-11 69.2 9.3 88 9-110 76-173 (250)
210 TIGR00478 tly hemolysin TlyA f 98.4 5.2E-07 1.1E-11 71.1 6.0 93 18-133 74-169 (228)
211 PF04816 DUF633: Family of unk 98.4 2.1E-06 4.5E-11 66.6 9.1 97 23-132 1-98 (205)
212 KOG1709 Guanidinoacetate methy 98.4 5.2E-06 1.1E-10 64.1 11.0 106 18-137 100-208 (271)
213 KOG0820 Ribosomal RNA adenine 98.4 2.4E-06 5.3E-11 68.0 9.3 79 15-110 54-132 (315)
214 KOG1500 Protein arginine N-met 98.4 3.4E-06 7.5E-11 69.1 10.1 99 18-132 176-279 (517)
215 KOG1975 mRNA cap methyltransfe 98.4 1.8E-06 4E-11 70.2 8.4 106 18-132 116-234 (389)
216 PF05219 DREV: DREV methyltran 98.4 4.6E-06 9.9E-11 66.2 10.3 94 19-137 94-190 (265)
217 KOG1122 tRNA and rRNA cytosine 98.4 3.5E-06 7.7E-11 70.7 10.1 108 17-135 239-371 (460)
218 PF01739 CheR: CheR methyltran 98.4 5.6E-07 1.2E-11 69.3 5.0 104 19-134 31-174 (196)
219 PF02384 N6_Mtase: N-6 DNA Met 98.3 2.4E-06 5.1E-11 70.2 8.6 120 3-132 30-180 (311)
220 PF01728 FtsJ: FtsJ-like methy 98.3 1.3E-06 2.8E-11 66.2 6.6 100 19-134 23-138 (181)
221 COG3510 CmcI Cephalosporin hyd 98.3 6.3E-06 1.4E-10 62.5 9.6 126 5-142 55-187 (237)
222 PF08123 DOT1: Histone methyla 98.3 5.9E-06 1.3E-10 64.1 9.7 111 15-137 38-160 (205)
223 PF06962 rRNA_methylase: Putat 98.3 5.5E-06 1.2E-10 60.1 8.8 84 46-141 1-96 (140)
224 KOG2187 tRNA uracil-5-methyltr 98.3 3.4E-06 7.4E-11 72.4 8.3 120 2-132 362-487 (534)
225 PF02005 TRM: N2,N2-dimethylgu 98.3 3.7E-06 8.1E-11 70.9 8.2 106 19-136 49-155 (377)
226 PRK11783 rlmL 23S rRNA m(2)G24 98.3 8.2E-06 1.8E-10 74.2 10.8 82 19-110 190-312 (702)
227 KOG3178 Hydroxyindole-O-methyl 98.2 1.4E-05 3E-10 65.9 10.4 95 20-137 178-277 (342)
228 PRK10611 chemotaxis methyltran 98.2 2.4E-06 5.2E-11 69.5 5.8 105 19-134 115-261 (287)
229 TIGR03439 methyl_EasF probable 98.2 1.9E-05 4.2E-10 65.2 11.2 108 19-133 76-195 (319)
230 COG1352 CheR Methylase of chem 98.2 7.6E-06 1.6E-10 65.9 8.2 104 19-134 96-240 (268)
231 COG0293 FtsJ 23S rRNA methylas 98.2 2.3E-05 5E-10 60.4 10.1 101 19-137 45-161 (205)
232 PF13679 Methyltransf_32: Meth 98.2 1.5E-05 3.2E-10 58.2 8.7 73 8-80 10-91 (141)
233 TIGR02987 met_A_Alw26 type II 98.2 1.4E-05 3.1E-10 70.3 9.9 99 4-110 9-121 (524)
234 COG4076 Predicted RNA methylas 98.2 6.5E-06 1.4E-10 62.3 6.5 96 21-134 34-134 (252)
235 TIGR01444 fkbM_fam methyltrans 98.2 7.3E-06 1.6E-10 59.4 6.6 58 22-81 1-58 (143)
236 COG2384 Predicted SAM-dependen 98.1 3.8E-05 8.2E-10 59.5 9.6 103 11-126 7-111 (226)
237 TIGR00006 S-adenosyl-methyltra 98.1 8.3E-05 1.8E-09 60.9 11.9 82 19-110 20-101 (305)
238 PF01269 Fibrillarin: Fibrilla 98.1 4.6E-05 9.9E-10 59.3 9.5 104 18-133 72-176 (229)
239 PF09243 Rsm22: Mitochondrial 98.0 9.2E-05 2E-09 60.0 11.5 111 8-133 19-137 (274)
240 COG1867 TRM1 N2,N2-dimethylgua 98.0 9.8E-05 2.1E-09 61.3 10.7 103 20-136 53-155 (380)
241 COG0116 Predicted N6-adenine-s 98.0 7.6E-05 1.6E-09 62.5 10.1 109 13-133 185-342 (381)
242 PF00398 RrnaAD: Ribosomal RNA 98.0 1.9E-05 4.2E-10 63.5 6.4 114 6-134 17-133 (262)
243 PF05148 Methyltransf_8: Hypot 97.9 5E-05 1.1E-09 58.6 7.1 97 9-137 62-160 (219)
244 PRK11760 putative 23S rRNA C24 97.9 0.00011 2.4E-09 60.9 9.1 87 18-128 210-296 (357)
245 KOG3201 Uncharacterized conser 97.8 9.8E-05 2.1E-09 54.7 7.4 106 17-133 27-138 (201)
246 KOG3115 Methyltransferase-like 97.8 8.9E-05 1.9E-09 56.9 7.4 104 20-133 61-181 (249)
247 PF05971 Methyltransf_10: Prot 97.8 9.1E-05 2E-09 60.4 7.7 81 21-110 104-186 (299)
248 COG0275 Predicted S-adenosylme 97.7 0.00062 1.3E-08 55.3 11.4 92 10-110 11-105 (314)
249 PF01861 DUF43: Protein of unk 97.7 0.0032 6.9E-08 49.7 14.8 97 19-129 44-142 (243)
250 PHA01634 hypothetical protein 97.7 0.0002 4.3E-09 51.0 6.7 75 18-110 27-101 (156)
251 COG1189 Predicted rRNA methyla 97.7 0.00013 2.8E-09 57.3 6.0 99 17-133 77-176 (245)
252 PF01795 Methyltransf_5: MraW 97.6 0.00025 5.4E-09 58.2 7.0 84 18-110 19-102 (310)
253 COG0500 SmtA SAM-dependent met 97.6 0.0011 2.3E-08 46.7 9.5 104 23-139 52-159 (257)
254 COG3897 Predicted methyltransf 97.5 0.00034 7.3E-09 53.4 6.3 96 17-132 77-175 (218)
255 COG1889 NOP1 Fibrillarin-like 97.5 0.0018 3.8E-08 49.8 9.8 103 18-133 75-178 (231)
256 KOG1253 tRNA methyltransferase 97.4 0.00014 3.1E-09 62.3 4.2 116 12-136 102-217 (525)
257 KOG2940 Predicted methyltransf 97.4 0.00029 6.2E-09 55.2 5.4 96 21-133 74-172 (325)
258 PF03141 Methyltransf_29: Puta 97.4 0.00048 1E-08 59.5 6.6 99 20-136 118-220 (506)
259 PF04672 Methyltransf_19: S-ad 97.4 0.00092 2E-08 53.7 7.8 122 15-138 64-193 (267)
260 PF04445 SAM_MT: Putative SAM- 97.4 0.00021 4.7E-09 56.3 3.9 76 21-110 77-160 (234)
261 PRK01747 mnmC bifunctional tRN 97.4 0.0023 4.9E-08 58.1 11.0 102 20-132 58-203 (662)
262 KOG2352 Predicted spermine/spe 97.3 0.00038 8.3E-09 59.8 5.2 113 20-139 296-420 (482)
263 KOG3045 Predicted RNA methylas 97.3 0.0015 3.3E-08 52.0 7.8 96 8-137 169-266 (325)
264 KOG1269 SAM-dependent methyltr 97.3 0.00071 1.5E-08 56.9 6.1 106 17-136 108-216 (364)
265 KOG0024 Sorbitol dehydrogenase 97.1 0.0087 1.9E-07 49.2 10.7 121 3-136 144-274 (354)
266 COG1064 AdhP Zn-dependent alco 97.1 0.0078 1.7E-07 50.1 10.6 97 17-137 164-261 (339)
267 COG0286 HsdM Type I restrictio 97.0 0.0046 9.9E-08 54.2 9.0 131 3-140 170-334 (489)
268 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.00031 6.6E-09 56.3 1.0 119 19-139 56-203 (256)
269 COG1063 Tdh Threonine dehydrog 96.9 0.026 5.5E-07 47.3 12.5 102 20-138 169-272 (350)
270 PF03141 Methyltransf_29: Puta 96.9 0.0037 8.1E-08 54.1 7.4 100 17-136 363-468 (506)
271 PF07942 N2227: N2227-like pro 96.9 0.0095 2.1E-07 48.1 9.1 111 9-132 39-199 (270)
272 KOG1596 Fibrillarin and relate 96.8 0.013 2.8E-07 46.4 8.6 105 17-133 154-259 (317)
273 COG5459 Predicted rRNA methyla 96.7 0.001 2.2E-08 55.2 2.3 108 17-134 111-224 (484)
274 COG4301 Uncharacterized conser 96.7 0.032 6.9E-07 44.4 10.5 119 6-133 61-191 (321)
275 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.0087 1.9E-07 42.3 6.7 92 29-138 1-92 (130)
276 KOG2198 tRNA cytosine-5-methyl 96.6 0.0092 2E-07 49.8 7.5 117 16-136 152-297 (375)
277 PF07091 FmrO: Ribosomal RNA m 96.6 0.0067 1.4E-07 48.2 6.3 74 19-108 105-178 (251)
278 PF02254 TrkA_N: TrkA-N domain 96.6 0.014 3.1E-07 40.4 7.5 88 28-133 4-94 (116)
279 KOG1501 Arginine N-methyltrans 96.6 0.0051 1.1E-07 52.5 5.9 60 22-83 69-128 (636)
280 COG4798 Predicted methyltransf 96.6 0.0063 1.4E-07 46.6 5.7 106 18-137 47-168 (238)
281 KOG4589 Cell division protein 96.6 0.041 8.8E-07 42.0 9.9 102 19-140 69-187 (232)
282 PF11599 AviRa: RRNA methyltra 96.2 0.12 2.7E-06 40.2 11.0 110 19-135 51-214 (246)
283 KOG1227 Putative methyltransfe 96.2 0.0029 6.3E-08 51.4 2.1 104 19-138 194-300 (351)
284 PRK09880 L-idonate 5-dehydroge 96.2 0.061 1.3E-06 44.6 10.0 98 19-136 169-267 (343)
285 PRK09424 pntA NAD(P) transhydr 96.1 0.18 3.9E-06 44.5 12.7 112 18-140 163-290 (509)
286 PF12692 Methyltransf_17: S-ad 96.0 0.15 3.3E-06 37.3 10.1 115 7-138 14-137 (160)
287 KOG2793 Putative N2,N2-dimethy 96.0 0.09 1.9E-06 42.0 9.6 100 19-133 86-197 (248)
288 PRK11524 putative methyltransf 95.8 0.023 4.9E-07 46.3 5.7 54 71-134 7-79 (284)
289 KOG2671 Putative RNA methylase 95.8 0.01 2.2E-07 49.2 3.5 94 3-110 192-293 (421)
290 cd08283 FDH_like_1 Glutathione 95.7 0.19 4.1E-06 42.4 11.1 106 16-135 181-306 (386)
291 cd08281 liver_ADH_like1 Zinc-d 95.6 0.14 3.1E-06 42.9 10.1 101 18-136 190-291 (371)
292 PRK13699 putative methylase; P 95.6 0.018 3.8E-07 45.4 4.3 51 73-133 2-70 (227)
293 TIGR00027 mthyl_TIGR00027 meth 95.6 0.32 7E-06 39.1 11.6 110 20-137 82-199 (260)
294 KOG3987 Uncharacterized conser 95.4 0.0063 1.4E-07 47.1 0.9 95 18-137 111-209 (288)
295 COG0677 WecC UDP-N-acetyl-D-ma 95.4 0.16 3.5E-06 43.1 9.1 111 21-141 10-134 (436)
296 PF05430 Methyltransf_30: S-ad 95.3 0.033 7.3E-07 39.7 4.4 50 72-132 32-87 (124)
297 cd08254 hydroxyacyl_CoA_DH 6-h 95.3 0.25 5.3E-06 40.3 10.3 99 17-134 163-262 (338)
298 COG1565 Uncharacterized conser 95.2 0.1 2.2E-06 43.7 7.6 49 20-68 78-133 (370)
299 PF11968 DUF3321: Putative met 95.2 0.022 4.8E-07 44.3 3.5 80 21-130 53-139 (219)
300 PF03721 UDPG_MGDP_dh_N: UDP-g 95.1 0.27 5.8E-06 37.5 9.1 109 22-140 2-125 (185)
301 KOG4058 Uncharacterized conser 95.0 0.12 2.7E-06 38.0 6.6 104 14-133 67-170 (199)
302 KOG2651 rRNA adenine N-6-methy 95.0 0.099 2.1E-06 44.1 6.9 53 8-62 142-194 (476)
303 PF01053 Cys_Met_Meta_PP: Cys/ 95.0 0.92 2E-05 38.7 13.0 122 4-137 54-180 (386)
304 cd08237 ribitol-5-phosphate_DH 95.0 0.34 7.3E-06 40.2 10.3 93 18-135 162-256 (341)
305 TIGR03451 mycoS_dep_FDH mycoth 95.0 0.47 1E-05 39.6 11.1 102 18-136 175-277 (358)
306 cd08294 leukotriene_B4_DH_like 95.0 0.44 9.6E-06 38.8 10.8 98 17-134 141-240 (329)
307 PF04378 RsmJ: Ribosomal RNA s 94.9 0.17 3.7E-06 40.3 7.9 110 8-132 47-161 (245)
308 cd00315 Cyt_C5_DNA_methylase C 94.7 0.075 1.6E-06 43.1 5.5 70 22-110 2-71 (275)
309 PLN02740 Alcohol dehydrogenase 94.7 0.64 1.4E-05 39.2 11.2 102 17-136 196-301 (381)
310 PF02636 Methyltransf_28: Puta 94.7 0.094 2E-06 41.8 5.9 47 20-66 19-72 (252)
311 PRK10309 galactitol-1-phosphat 94.6 0.57 1.2E-05 38.7 10.7 101 19-136 160-261 (347)
312 cd05188 MDR Medium chain reduc 94.6 0.66 1.4E-05 36.2 10.6 99 18-135 133-232 (271)
313 KOG1099 SAM-dependent methyltr 94.5 0.24 5.2E-06 39.1 7.5 96 20-133 42-161 (294)
314 COG1568 Predicted methyltransf 94.5 0.17 3.7E-06 41.1 6.8 101 19-133 152-258 (354)
315 COG2961 ComJ Protein involved 94.5 0.72 1.6E-05 36.8 10.2 110 8-132 78-192 (279)
316 PLN02827 Alcohol dehydrogenase 94.5 0.63 1.4E-05 39.2 10.8 102 17-136 191-296 (378)
317 cd08239 THR_DH_like L-threonin 94.5 0.83 1.8E-05 37.5 11.3 99 18-135 162-262 (339)
318 PLN03154 putative allyl alcoho 94.5 0.71 1.5E-05 38.5 10.9 100 17-135 156-258 (348)
319 PF10237 N6-adenineMlase: Prob 94.4 1.4 3E-05 32.9 11.1 108 4-132 8-120 (162)
320 KOG1098 Putative SAM-dependent 94.2 0.092 2E-06 46.8 5.1 95 17-132 42-155 (780)
321 COG3129 Predicted SAM-dependen 94.2 0.057 1.2E-06 42.6 3.4 80 21-110 80-162 (292)
322 TIGR00561 pntA NAD(P) transhyd 94.1 0.85 1.8E-05 40.3 11.0 43 18-62 162-205 (511)
323 cd08295 double_bond_reductase_ 94.0 1 2.2E-05 37.0 11.0 99 17-134 149-250 (338)
324 cd08230 glucose_DH Glucose deh 94.0 1 2.2E-05 37.4 11.1 95 19-136 172-270 (355)
325 cd00401 AdoHcyase S-adenosyl-L 94.0 0.98 2.1E-05 38.9 11.0 95 11-135 189-289 (413)
326 PF05050 Methyltransf_21: Meth 94.0 0.16 3.5E-06 37.0 5.6 43 25-67 1-48 (167)
327 cd08293 PTGR2 Prostaglandin re 94.0 0.78 1.7E-05 37.7 10.2 94 21-133 156-252 (345)
328 TIGR03366 HpnZ_proposed putati 94.0 1.5 3.3E-05 35.1 11.7 100 19-137 120-220 (280)
329 TIGR02825 B4_12hDH leukotriene 94.0 1.3 2.9E-05 36.1 11.5 98 17-134 136-236 (325)
330 COG1062 AdhC Zn-dependent alco 93.8 0.99 2.1E-05 37.7 10.2 102 17-136 183-286 (366)
331 COG0686 Ald Alanine dehydrogen 93.7 0.72 1.6E-05 38.1 9.1 95 20-133 168-266 (371)
332 PRK09028 cystathionine beta-ly 93.7 3.6 7.7E-05 35.2 13.9 124 5-140 61-188 (394)
333 PRK08114 cystathionine beta-ly 93.7 4.1 8.8E-05 34.9 15.0 125 4-140 61-191 (395)
334 PF00145 DNA_methylase: C-5 cy 93.6 0.66 1.4E-05 37.8 9.1 69 22-110 2-70 (335)
335 TIGR03201 dearomat_had 6-hydro 93.5 1.2 2.7E-05 36.9 10.6 106 18-137 165-274 (349)
336 PRK07810 O-succinylhomoserine 93.5 2.9 6.2E-05 35.8 12.9 123 4-138 69-195 (403)
337 TIGR00518 alaDH alanine dehydr 93.4 1.5 3.2E-05 37.2 11.0 104 19-141 166-273 (370)
338 TIGR02818 adh_III_F_hyde S-(hy 93.4 1.5 3.3E-05 36.7 11.1 101 18-136 184-288 (368)
339 KOG1331 Predicted methyltransf 93.4 0.11 2.4E-06 42.1 3.9 91 18-133 44-141 (293)
340 PF01210 NAD_Gly3P_dh_N: NAD-d 93.3 0.45 9.8E-06 35.1 6.9 94 23-133 2-101 (157)
341 PRK11524 putative methyltransf 93.3 0.35 7.6E-06 39.3 6.8 56 8-66 195-252 (284)
342 COG0604 Qor NADPH:quinone redu 93.2 1.7 3.6E-05 36.1 10.8 99 17-134 140-240 (326)
343 PF03807 F420_oxidored: NADP o 93.1 0.45 9.8E-06 31.6 6.2 85 23-132 2-91 (96)
344 COG3315 O-Methyltransferase in 93.1 1.1 2.5E-05 36.7 9.5 109 20-136 93-210 (297)
345 cd08285 NADP_ADH NADP(H)-depen 93.1 1.6 3.5E-05 36.0 10.6 103 17-136 164-267 (351)
346 cd08300 alcohol_DH_class_III c 93.0 2.1 4.5E-05 35.8 11.3 104 17-136 184-289 (368)
347 TIGR01202 bchC 2-desacetyl-2-h 93.0 0.75 1.6E-05 37.5 8.4 87 19-135 144-231 (308)
348 TIGR02356 adenyl_thiF thiazole 92.9 2.2 4.8E-05 32.8 10.5 83 16-110 17-120 (202)
349 PRK11064 wecC UDP-N-acetyl-D-m 92.8 4.8 0.0001 34.6 13.4 108 21-140 4-124 (415)
350 PRK13699 putative methylase; P 92.8 0.47 1E-05 37.4 6.7 56 9-67 151-208 (227)
351 PRK07671 cystathionine beta-ly 92.8 3.7 8E-05 34.7 12.6 122 4-138 49-174 (377)
352 PRK12475 thiamine/molybdopteri 92.8 2.2 4.8E-05 35.7 11.0 82 17-110 21-125 (338)
353 PRK09496 trkA potassium transp 92.6 1.4 3.1E-05 37.8 10.0 97 20-132 231-328 (453)
354 TIGR01324 cysta_beta_ly_B cyst 92.6 5.8 0.00013 33.6 14.1 126 4-141 49-178 (377)
355 TIGR02822 adh_fam_2 zinc-bindi 92.5 2.4 5.1E-05 35.0 10.9 91 18-136 164-255 (329)
356 cd08301 alcohol_DH_plants Plan 92.5 2.5 5.5E-05 35.2 11.1 104 17-136 185-290 (369)
357 COG0626 MetC Cystathionine bet 92.3 5 0.00011 34.4 12.7 123 4-138 62-189 (396)
358 cd08277 liver_alcohol_DH_like 92.3 3.4 7.3E-05 34.5 11.6 101 18-136 183-287 (365)
359 PRK08045 cystathionine gamma-s 92.3 5.3 0.00011 34.0 12.9 124 4-139 51-178 (386)
360 PRK07502 cyclohexadienyl dehyd 92.2 0.97 2.1E-05 37.0 8.2 88 21-132 7-97 (307)
361 KOG2798 Putative trehalase [Ca 92.1 1 2.2E-05 37.3 7.8 33 100-132 258-293 (369)
362 PRK06234 methionine gamma-lyas 92.1 5.2 0.00011 34.1 12.7 124 4-139 63-192 (400)
363 PF10354 DUF2431: Domain of un 91.7 1.4 3E-05 33.0 7.8 100 26-134 3-124 (166)
364 PRK07582 cystathionine gamma-l 91.6 5 0.00011 33.8 11.9 118 4-137 50-171 (366)
365 PLN02494 adenosylhomocysteinas 91.6 3.3 7.1E-05 36.3 10.9 96 10-134 240-340 (477)
366 PF02826 2-Hacid_dh_C: D-isome 91.5 1.6 3.6E-05 32.7 8.2 88 18-132 34-124 (178)
367 PLN02353 probable UDP-glucose 91.5 4 8.6E-05 35.8 11.5 111 22-140 3-132 (473)
368 PRK15001 SAM-dependent 23S rib 91.5 2.8 6.1E-05 35.7 10.2 110 6-136 31-143 (378)
369 KOG2078 tRNA modification enzy 91.5 0.18 3.9E-06 43.1 3.1 64 19-85 249-313 (495)
370 PRK08574 cystathionine gamma-s 91.4 5.2 0.00011 34.0 11.9 121 4-137 52-176 (385)
371 TIGR00675 dcm DNA-methyltransf 91.4 1.6 3.4E-05 36.1 8.5 68 23-110 1-68 (315)
372 COG0287 TyrA Prephenate dehydr 91.4 1.7 3.7E-05 35.3 8.6 89 21-132 4-95 (279)
373 cd00757 ThiF_MoeB_HesA_family 91.4 3.9 8.5E-05 32.0 10.4 82 17-110 18-120 (228)
374 PRK05939 hypothetical protein; 91.4 8.4 0.00018 32.9 13.2 121 4-137 46-170 (397)
375 KOG0822 Protein kinase inhibit 91.3 0.39 8.4E-06 42.3 4.9 100 20-132 368-475 (649)
376 PRK05967 cystathionine beta-ly 91.2 8.7 0.00019 32.9 13.4 122 4-137 63-188 (395)
377 cd08233 butanediol_DH_like (2R 91.1 4.8 0.0001 33.2 11.3 101 18-136 171-273 (351)
378 cd08238 sorbose_phosphate_red 91.1 2.3 5E-05 36.3 9.6 100 19-132 175-285 (410)
379 PRK08247 cystathionine gamma-s 91.1 8.3 0.00018 32.4 14.3 121 4-137 51-175 (366)
380 PRK03659 glutathione-regulated 91.1 1.1 2.4E-05 40.5 7.8 93 21-133 401-496 (601)
381 PRK08064 cystathionine beta-ly 91.0 6.5 0.00014 33.4 12.1 122 4-138 53-178 (390)
382 PF00072 Response_reg: Respons 91.0 3.3 7.2E-05 27.6 9.5 76 47-134 1-78 (112)
383 cd00544 CobU Adenosylcobinamid 91.0 5.1 0.00011 30.0 10.2 127 27-172 7-155 (169)
384 PLN02586 probable cinnamyl alc 90.9 6.8 0.00015 32.7 12.1 95 19-135 183-278 (360)
385 KOG0022 Alcohol dehydrogenase, 90.9 2.4 5.2E-05 35.2 8.8 102 16-135 189-294 (375)
386 PRK07811 cystathionine gamma-s 90.9 5.1 0.00011 34.0 11.4 123 4-138 60-186 (388)
387 COG0270 Dcm Site-specific DNA 90.9 1.8 3.8E-05 36.0 8.4 99 20-137 3-118 (328)
388 PLN02256 arogenate dehydrogena 90.9 2.9 6.3E-05 34.4 9.6 95 11-131 27-123 (304)
389 cd01488 Uba3_RUB Ubiquitin act 90.8 3.4 7.4E-05 33.9 9.8 77 22-110 1-97 (291)
390 KOG0821 Predicted ribosomal RN 90.8 0.48 1E-05 37.3 4.6 60 20-83 51-110 (326)
391 PRK10669 putative cation:proto 90.8 1.4 3E-05 39.3 8.2 93 21-133 418-513 (558)
392 PF01262 AlaDh_PNT_C: Alanine 90.7 0.83 1.8E-05 34.0 5.8 45 16-62 16-61 (168)
393 cd05279 Zn_ADH1 Liver alcohol 90.7 4.5 9.7E-05 33.8 10.8 101 18-134 182-284 (365)
394 KOG0053 Cystathionine beta-lya 90.7 10 0.00022 32.6 13.8 123 5-139 77-203 (409)
395 PF06859 Bin3: Bicoid-interact 90.7 0.17 3.7E-06 35.2 1.8 39 101-139 1-48 (110)
396 TIGR02080 O_succ_thio_ly O-suc 90.7 9.5 0.00021 32.3 12.8 124 4-139 50-177 (382)
397 KOG2352 Predicted spermine/spe 90.6 1.7 3.7E-05 37.9 8.2 96 22-133 51-159 (482)
398 PRK06940 short chain dehydroge 90.6 4.4 9.5E-05 32.4 10.3 81 21-110 3-85 (275)
399 KOG2360 Proliferation-associat 90.6 0.31 6.6E-06 41.2 3.5 71 12-83 206-276 (413)
400 cd05278 FDH_like Formaldehyde 90.6 3.5 7.6E-05 33.7 10.0 100 18-134 166-266 (347)
401 cd08278 benzyl_alcohol_DH Benz 90.5 3.9 8.5E-05 34.1 10.3 99 18-134 185-284 (365)
402 PRK06176 cystathionine gamma-s 90.5 8.6 0.00019 32.6 12.4 122 4-138 49-174 (380)
403 PF00899 ThiF: ThiF family; I 90.4 4 8.6E-05 29.0 8.9 80 20-111 2-102 (135)
404 cd05213 NAD_bind_Glutamyl_tRNA 90.4 7.7 0.00017 31.9 11.7 98 18-138 176-275 (311)
405 PRK08507 prephenate dehydrogen 90.4 1.5 3.3E-05 35.3 7.4 84 22-132 2-88 (275)
406 PRK08248 O-acetylhomoserine am 90.3 6.4 0.00014 34.0 11.6 122 4-137 63-188 (431)
407 PRK08861 cystathionine gamma-s 90.3 11 0.00023 32.2 14.8 125 4-140 52-180 (388)
408 cd08286 FDH_like_ADH2 formalde 90.2 6.9 0.00015 32.1 11.4 99 18-133 165-264 (345)
409 PRK05476 S-adenosyl-L-homocyst 90.1 12 0.00026 32.5 13.0 86 19-134 211-298 (425)
410 cd08261 Zn_ADH7 Alcohol dehydr 90.0 6.4 0.00014 32.2 11.1 100 16-133 156-256 (337)
411 cd01492 Aos1_SUMO Ubiquitin ac 90.0 5.3 0.00011 30.6 9.8 82 17-111 18-120 (197)
412 TIGR01425 SRP54_euk signal rec 90.0 7.5 0.00016 33.7 11.5 104 20-137 100-223 (429)
413 PRK07688 thiamine/molybdopteri 89.9 6.8 0.00015 32.8 11.1 82 17-110 21-125 (339)
414 PF03686 UPF0146: Uncharacteri 89.9 3.2 7E-05 29.6 7.7 90 10-125 4-94 (127)
415 COG1748 LYS9 Saccharopine dehy 89.9 2.1 4.5E-05 36.5 8.0 73 21-111 2-78 (389)
416 KOG1201 Hydroxysteroid 17-beta 89.8 6.8 0.00015 32.2 10.6 84 19-110 37-123 (300)
417 PRK06460 hypothetical protein; 89.8 11 0.00024 31.8 12.7 123 4-138 44-170 (376)
418 PRK15182 Vi polysaccharide bio 89.7 4.6 0.0001 34.9 10.2 101 18-140 4-125 (425)
419 PRK03562 glutathione-regulated 89.7 1.4 3.1E-05 39.9 7.4 93 21-133 401-496 (621)
420 cd01484 E1-2_like Ubiquitin ac 89.6 5.9 0.00013 31.4 10.0 76 22-110 1-100 (234)
421 PRK08324 short chain dehydroge 89.6 5.8 0.00013 36.4 11.3 80 19-110 421-507 (681)
422 TIGR02819 fdhA_non_GSH formald 89.5 5.5 0.00012 33.8 10.5 104 17-137 183-301 (393)
423 PF02558 ApbA: Ketopantoate re 89.3 1.3 2.8E-05 32.0 5.7 35 99-133 65-99 (151)
424 cd08232 idonate-5-DH L-idonate 89.2 6.1 0.00013 32.3 10.3 95 19-133 165-260 (339)
425 PRK09422 ethanol-active dehydr 89.2 11 0.00023 30.7 12.1 99 16-133 159-259 (338)
426 PRK15057 UDP-glucose 6-dehydro 89.2 1.8 3.9E-05 36.9 7.2 38 23-62 3-40 (388)
427 PRK09496 trkA potassium transp 89.1 4.8 0.0001 34.6 10.0 92 22-132 2-97 (453)
428 PRK05225 ketol-acid reductoiso 89.1 3.1 6.6E-05 36.4 8.5 92 16-134 32-130 (487)
429 cd00755 YgdL_like Family of ac 88.9 9.4 0.0002 30.1 10.7 82 18-110 9-111 (231)
430 PRK00771 signal recognition pa 88.9 8.8 0.00019 33.4 11.3 105 20-136 95-215 (437)
431 PF02153 PDH: Prephenate dehyd 88.8 1.4 3E-05 35.3 6.0 74 35-132 3-76 (258)
432 cd05285 sorbitol_DH Sorbitol d 88.7 6.4 0.00014 32.3 10.1 99 17-133 160-263 (343)
433 PRK12921 2-dehydropantoate 2-r 88.7 3.4 7.4E-05 33.5 8.4 34 100-133 67-100 (305)
434 PF12242 Eno-Rase_NADH_b: NAD( 88.5 1.4 3.1E-05 28.5 4.7 36 18-53 37-73 (78)
435 PRK05854 short chain dehydroge 88.5 5.9 0.00013 32.4 9.7 87 18-109 12-101 (313)
436 PF07757 AdoMet_MTase: Predict 88.4 0.84 1.8E-05 31.7 3.8 32 20-54 59-90 (112)
437 PRK07063 short chain dehydroge 88.3 6.5 0.00014 30.8 9.6 83 18-109 5-94 (260)
438 COG0541 Ffh Signal recognition 88.3 7.6 0.00016 33.6 10.3 124 19-168 99-239 (451)
439 PF11312 DUF3115: Protein of u 88.3 1.7 3.6E-05 35.9 6.1 110 21-136 88-243 (315)
440 PRK07417 arogenate dehydrogena 88.2 4.4 9.5E-05 32.7 8.7 85 22-131 2-87 (279)
441 TIGR01328 met_gam_lyase methio 88.2 12 0.00026 31.8 11.6 123 4-138 58-184 (391)
442 PRK10083 putative oxidoreducta 88.2 7.3 0.00016 31.8 10.1 99 17-134 158-258 (339)
443 PRK05690 molybdopterin biosynt 88.2 12 0.00025 29.8 11.1 82 17-110 29-131 (245)
444 PRK08306 dipicolinate synthase 88.1 12 0.00025 30.7 11.1 87 19-132 151-238 (296)
445 cd08265 Zn_ADH3 Alcohol dehydr 88.1 9.2 0.0002 32.1 10.9 100 19-134 203-306 (384)
446 PRK08762 molybdopterin biosynt 88.1 8.4 0.00018 32.6 10.6 82 17-110 132-234 (376)
447 cd08231 MDR_TM0436_like Hypoth 88.0 12 0.00026 31.0 11.4 102 19-134 177-279 (361)
448 cd08291 ETR_like_1 2-enoyl thi 88.0 12 0.00025 30.5 11.1 97 19-134 142-241 (324)
449 PRK14620 NAD(P)H-dependent gly 87.9 2.8 6E-05 34.6 7.5 94 22-132 2-103 (326)
450 PRK12439 NAD(P)H-dependent gly 87.9 1.9 4.1E-05 36.0 6.5 97 18-132 5-108 (341)
451 cd00614 CGS_like CGS_like: Cys 87.9 15 0.00033 30.8 12.7 123 4-138 39-165 (369)
452 cd08260 Zn_ADH6 Alcohol dehydr 87.8 8.7 0.00019 31.5 10.4 98 17-133 163-262 (345)
453 PRK05708 2-dehydropantoate 2-r 87.6 2.8 6.1E-05 34.4 7.2 98 21-133 3-102 (305)
454 cd08290 ETR 2-enoyl thioester 87.6 9.3 0.0002 31.2 10.4 100 18-133 145-249 (341)
455 COG2933 Predicted SAM-dependen 87.5 1.7 3.7E-05 35.2 5.5 71 17-110 209-279 (358)
456 cd08240 6_hydroxyhexanoate_dh_ 87.4 11 0.00024 30.9 10.9 98 19-134 175-273 (350)
457 TIGR02355 moeB molybdopterin s 87.4 13 0.00028 29.5 10.7 83 17-111 21-124 (240)
458 cd08296 CAD_like Cinnamyl alco 87.4 8.7 0.00019 31.4 10.1 96 17-133 161-257 (333)
459 PRK08293 3-hydroxybutyryl-CoA 87.1 9.7 0.00021 30.8 10.1 95 21-132 4-117 (287)
460 PF08351 DUF1726: Domain of un 87.1 1.3 2.8E-05 29.8 4.1 78 98-175 8-89 (92)
461 PRK05599 hypothetical protein; 87.1 7.9 0.00017 30.3 9.3 79 22-110 2-86 (246)
462 cd05286 QOR2 Quinone oxidoredu 87.0 10 0.00022 30.0 10.2 99 16-133 133-233 (320)
463 PF03446 NAD_binding_2: NAD bi 87.0 10 0.00022 27.9 9.4 89 22-136 3-95 (163)
464 PRK07109 short chain dehydroge 87.0 16 0.00035 30.2 11.8 85 19-110 7-94 (334)
465 PLN02514 cinnamyl-alcohol dehy 86.9 17 0.00036 30.3 11.7 96 19-136 180-276 (357)
466 PF05206 TRM13: Methyltransfer 86.9 3.1 6.7E-05 33.5 6.9 60 7-67 3-69 (259)
467 PRK13512 coenzyme A disulfide 86.9 6.6 0.00014 33.9 9.4 115 10-137 138-265 (438)
468 cd08263 Zn_ADH10 Alcohol dehyd 86.7 11 0.00024 31.3 10.5 99 18-133 186-285 (367)
469 PRK06153 hypothetical protein; 86.6 16 0.00035 31.2 11.2 38 15-53 171-209 (393)
470 PRK05867 short chain dehydroge 86.6 8.1 0.00018 30.2 9.2 81 18-109 7-94 (253)
471 cd01487 E1_ThiF_like E1_ThiF_l 86.6 12 0.00025 28.1 9.6 77 22-110 1-97 (174)
472 PRK06522 2-dehydropantoate 2-r 86.5 12 0.00026 30.1 10.4 93 22-133 2-98 (304)
473 PRK06249 2-dehydropantoate 2-r 86.5 4.8 0.0001 33.0 8.1 35 99-133 70-104 (313)
474 PRK07050 cystathionine beta-ly 86.4 19 0.00042 30.6 14.3 123 4-138 64-190 (394)
475 COG1893 ApbA Ketopantoate redu 86.4 5.9 0.00013 32.7 8.5 35 99-133 65-99 (307)
476 PTZ00075 Adenosylhomocysteinas 86.3 8.2 0.00018 33.9 9.6 86 18-133 252-339 (476)
477 PRK15116 sulfur acceptor prote 86.3 16 0.00035 29.6 11.2 36 17-53 27-63 (268)
478 PRK07062 short chain dehydroge 86.3 9.2 0.0002 30.0 9.4 87 18-109 6-95 (265)
479 PRK08133 O-succinylhomoserine 86.3 20 0.00043 30.5 12.1 122 4-137 60-185 (390)
480 PRK08655 prephenate dehydrogen 86.1 4.9 0.00011 34.9 8.2 87 22-132 2-89 (437)
481 PLN02702 L-idonate 5-dehydroge 86.0 16 0.00034 30.3 11.1 103 18-135 180-285 (364)
482 PRK08328 hypothetical protein; 85.9 15 0.00033 28.8 12.5 36 17-53 24-60 (231)
483 PRK07680 late competence prote 85.7 6.4 0.00014 31.6 8.3 87 22-132 2-93 (273)
484 COG4017 Uncharacterized protei 85.7 9.9 0.00021 29.4 8.6 91 11-133 36-128 (254)
485 PF11899 DUF3419: Protein of u 85.6 1.5 3.3E-05 37.3 4.7 50 9-61 25-74 (380)
486 PRK08415 enoyl-(acyl carrier p 85.5 17 0.00037 29.1 11.2 80 19-109 4-91 (274)
487 PRK06084 O-acetylhomoserine am 85.3 23 0.00051 30.5 13.1 123 4-138 57-183 (425)
488 cd05288 PGDH Prostaglandin deh 85.2 11 0.00023 30.6 9.5 97 18-133 144-242 (329)
489 COG1179 Dinucleotide-utilizing 85.2 8.1 0.00017 30.9 8.2 37 17-54 27-64 (263)
490 PRK07812 O-acetylhomoserine am 85.0 25 0.00053 30.6 11.9 123 4-137 68-194 (436)
491 PRK06172 short chain dehydroge 84.9 12 0.00026 29.1 9.4 80 19-109 6-92 (253)
492 PRK12491 pyrroline-5-carboxyla 84.9 8.6 0.00019 31.1 8.6 86 22-132 4-94 (272)
493 cd08279 Zn_ADH_class_III Class 84.8 13 0.00027 31.0 9.9 100 17-133 180-280 (363)
494 PRK06079 enoyl-(acyl carrier p 84.8 17 0.00037 28.5 10.6 79 18-109 5-91 (252)
495 PRK07503 methionine gamma-lyas 84.7 22 0.00048 30.4 11.5 123 4-138 64-190 (403)
496 cd08234 threonine_DH_like L-th 84.7 20 0.00043 29.1 11.4 97 17-133 157-255 (334)
497 cd08266 Zn_ADH_like1 Alcohol d 84.5 18 0.00039 29.1 10.5 98 18-134 165-264 (342)
498 PRK09242 tropinone reductase; 84.4 15 0.00032 28.7 9.8 83 19-110 8-97 (257)
499 cd01065 NAD_bind_Shikimate_DH 84.3 3.5 7.7E-05 29.7 5.7 45 18-64 17-63 (155)
500 PRK08945 putative oxoacyl-(acy 84.2 13 0.00029 28.8 9.3 82 18-109 10-100 (247)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=5.4e-40 Score=253.71 Aligned_cols=179 Identities=44% Similarity=0.722 Sum_probs=160.9
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|++++++++||..+++..+|++||||||++|+|++++|.++|++++++++|++++..+.|+++++++|+.++++++.+|+
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 67899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHH
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDF 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (192)
.++++.+..+ ...++||+||+|+++.+|..+++.+.++|+|||+|++||++|.|.+..+.... .-...
T Consensus 107 ~~~l~~l~~~------~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~------~~~~~ 174 (205)
T PF01596_consen 107 LEVLPELAND------GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED------PKTVA 174 (205)
T ss_dssp HHHHHHHHHT------TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS------HHHHH
T ss_pred HhhHHHHHhc------cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchh------hhHHH
Confidence 9999988643 01358999999999999999999999999999999999999999998884432 23345
Q ss_pred HHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 029536 161 VQELNKALAVDPRIEICQISIADGVTLCRRI 191 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 191 (192)
+++|++++.++|+++++++|+|||+.|++||
T Consensus 175 ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 175 IREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=2e-38 Score=250.94 Aligned_cols=186 Identities=80% Similarity=1.297 Sum_probs=168.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|++++++++||..+++..++++|||||+++|+|++++|.+++++++++++|.+++.++.|+++++++|+.++++++.+++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 67889999999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHH
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDF 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (192)
.+.++.+.++ +...++||+||+|+++..|.++++.+.++|++||+|++||++|.|.+.++......++.+.+++.
T Consensus 141 ~e~L~~l~~~-----~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ 215 (247)
T PLN02589 141 LPVLDQMIED-----GKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDF 215 (247)
T ss_pred HHHHHHHHhc-----cccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHH
Confidence 9999887532 00136899999999999999999999999999999999999999999887543333444556678
Q ss_pred HHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 029536 161 VQELNKALAVDPRIEICQISIADGVTLCRRI 191 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 191 (192)
+++|++.+..+|+++++++|+|||+.+++|+
T Consensus 216 ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 216 VLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 9999999999999999999999999999997
No 3
>PLN02476 O-methyltransferase
Probab=100.00 E-value=6.9e-37 Score=244.99 Aligned_cols=179 Identities=40% Similarity=0.691 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|++++++++||..+++..++++||||||++|++++++|..++++++++++|.+++.++.|+++++++|+.++++++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 67899999999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHH
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDF 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (192)
.+.++.+..+ ...++||+||+|+++..|.++++.+.++|+|||+|++||++|.|.+.++...+ .....
T Consensus 180 ~e~L~~l~~~------~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d------~~t~~ 247 (278)
T PLN02476 180 AESLKSMIQN------GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND------AKTIS 247 (278)
T ss_pred HHHHHHHHhc------ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC------HHHHH
Confidence 9999876422 01368999999999999999999999999999999999999999998876533 22358
Q ss_pred HHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 029536 161 VQELNKALAVDPRIEICQISIADGVTLCRRI 191 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 191 (192)
+++|++++.++|+++++++|+|||+++++|+
T Consensus 248 ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 248 IRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999999999996
No 4
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=233.73 Aligned_cols=174 Identities=36% Similarity=0.627 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe-CCchhH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPL 83 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~ 83 (192)
|++++||..|++..++++|||||++.|+|++|||..+|.+++++++|.++++.+.|++|++++|+.++++++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 9999999999999999999999999999999999999988999999999999999999999999999999999 699888
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHHHHH
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQE 163 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 163 (192)
+.... .++||+||+|+++..|.++|+.+.++|+|||+|++||++++|.+..+.. +..+.....+++
T Consensus 125 l~~~~----------~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~----~~~~~~~~~~~~ 190 (219)
T COG4122 125 LSRLL----------DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI----RDARTQVRGVRD 190 (219)
T ss_pred HHhcc----------CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc----hhHHHHHHHHHH
Confidence 87632 6899999999999999999999999999999999999999999877753 233566777999
Q ss_pred HHHHhhcCCCeeEEEeecCCeeEEEEEcC
Q 029536 164 LNKALAVDPRIEICQISIADGVTLCRRIG 192 (192)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~G~~i~~k~~ 192 (192)
|++++.++|+++.+++|+|||+.+++|+|
T Consensus 191 ~~~~~~~~~~~~t~~lP~gDGl~v~~k~~ 219 (219)
T COG4122 191 FNDYLLEDPRYDTVLLPLGDGLLLSRKRG 219 (219)
T ss_pred HHHHHhhCcCceeEEEecCCceEEEeecC
Confidence 99999999999999999999999999986
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1.1e-35 Score=234.93 Aligned_cols=184 Identities=60% Similarity=0.952 Sum_probs=166.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|++++++++||+.+++..++++|||+|||+|+++++++.+++++++++++|+++++++.|++++++.++.++++++.+|+
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 67899999999999999999999999999999999999998878999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHH
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDF 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (192)
.+.++.+..+ ...++||+||+|+++..|.++++.+.++|+|||+|++||++|.|.+.++... .+++.+...+.
T Consensus 130 ~~~L~~l~~~------~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~-~~~~~~~~~~~ 202 (234)
T PLN02781 130 LSALDQLLNN------DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDE-VPEHMRAYRKA 202 (234)
T ss_pred HHHHHHHHhC------CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccc-cchhhhHHHHH
Confidence 9988776421 0135899999999999999999999999999999999999999999887642 23444566789
Q ss_pred HHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 029536 161 VQELNKALAVDPRIEICQISIADGVTLCRRI 191 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 191 (192)
+++|++++..+|+++++++|+|||+.+++|+
T Consensus 203 ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 203 LLEFNKLLASDPRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence 9999999999999999999999999999986
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-35 Score=223.28 Aligned_cols=183 Identities=53% Similarity=0.903 Sum_probs=165.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 1 MMTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|.++|++++|++++++..+|+++||||+++|+|++.+|.++|++++|+++|++++.++.+.+..+.+|..++++++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHH
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDF 160 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (192)
.+.++++.++ ...+.||++|+|+++.+|..+++.+.+++|+||+|++||++|.|.+..|.... +.+...+++.
T Consensus 135 ~esLd~l~~~------~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~-~~~~~~~r~~ 207 (237)
T KOG1663|consen 135 LESLDELLAD------GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNT-PVRGRSIREA 207 (237)
T ss_pred hhhHHHHHhc------CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCC-Ccchhhhhhh
Confidence 9999888654 24689999999999999999999999999999999999999999666665432 2233444444
Q ss_pred HHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 029536 161 VQELNKALAVDPRIEICQISIADGVTLCRRI 191 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~G~~i~~k~ 191 (192)
-++++.+..||+++.+++|+|+|+++|+|+
T Consensus 208 -~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 208 -LNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred -hhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 499999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=4.3e-18 Score=119.19 Aligned_cols=104 Identities=22% Similarity=0.353 Sum_probs=87.1
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|..+.++++..+ +.+++++|++|++++.+++++...+..++++++++|. ......
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~----------- 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF----------- 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----------
Confidence 467999999999999999999545 7899999999999999999998888889999999999 332222
Q ss_pred CCcccEEEEeC-CCc------CcHHHHHHHHhccCCCeEEEEeC
Q 029536 99 HGTFDFVFVDA-DKD------NYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 99 ~~~~D~v~id~-~~~------~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.++||+|++.. ... ...++++.+.+.|+|||+++++.
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 56899999988 322 23467899999999999999864
No 8
>PRK04457 spermidine synthase; Provisional
Probab=99.71 E-value=9.8e-16 Score=123.03 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=94.5
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
++..+....++++|||||||.|.++.++++..| ..+++++|++|++++.|++++...+..++++++.+|+.++++..
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-- 133 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-- 133 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC--
Confidence 334444456789999999999999999998876 78999999999999999999876555578999999998887653
Q ss_pred hhhcccccCCCcccEEEEeCCCc-------CcHHHHHHHHhccCCCeEEEEe
Q 029536 90 DVSSTKEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 134 ---------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 ---------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred ---------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 56899999997521 2378999999999999999985
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=9.9e-16 Score=115.17 Aligned_cols=118 Identities=23% Similarity=0.242 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
++...+.-..+...+..+++|||||+|..++.++...| .++++++|-+++.++..++|.+++++ ++++++.+++.+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 44444444555667788999999999999999996555 89999999999999999999999995 89999999999988
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+.. .++|.||+.+. ......++.++..|||||.||.+-+.
T Consensus 98 ~~~------------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 PDL------------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cCC------------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 743 38999999998 88899999999999999999976543
No 10
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.71 E-value=3.4e-16 Score=111.08 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=91.5
Q ss_pred HHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh
Q 029536 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 90 (192)
+...+...+..++||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+. .+++++.+|.....+..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhh---
Confidence 33333444567999999999999999999876 58999999999999999999998877 47899999876433322
Q ss_pred hhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 91 VSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||.|+++.....+.++++.+.+.|+|||.+++.
T Consensus 86 --------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 --------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred --------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 468999999876666788999999999999999875
No 11
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.69 E-value=8.8e-16 Score=118.47 Aligned_cols=110 Identities=24% Similarity=0.340 Sum_probs=94.0
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...+..++||+|||+|..++.++...++.++++++|+++++++.++++++..++.++++++.+|..+.++..
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-------- 108 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-------- 108 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc--------
Confidence 345668999999999999999988765568999999999999999999999887678999999987765543
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.++||.||+......+..+++.+.+.|+|||.++++..
T Consensus 109 ---~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 ---NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ---CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 46899999977666778899999999999999997543
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.69 E-value=3.1e-15 Score=114.35 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=92.0
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
++...+...++.+|||+|||+|..+..+++..+ +.+++++|+++++++.++++++..++ .+++++.+|.... +
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~---~-- 94 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIE---L-- 94 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhh---c--
Confidence 333444556778999999999999999998865 68999999999999999999998887 4799999886421 1
Q ss_pred hhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 90 DVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.++||+|+++.....+.++++.+.+.|+|||.+++...
T Consensus 95 ---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 ---------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred ---------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 45799999987766678889999999999999998654
No 13
>PLN03075 nicotianamine synthase; Provisional
Probab=99.68 E-value=6.5e-16 Score=124.88 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchh-HHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHH-cCCCCceEEEeCCch
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTG-YSLLATALAIPDDGKILALDITKEHYEKGLPIIQK-AGVAHKIDFREGPAL 81 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G-~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~ 81 (192)
.+-++++|+.+... +|++|+|||||.| .+++.+++...++++++++|+++++++.|++.+.. .++.++++|..+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 45566777777665 8999999999955 56666665544489999999999999999999965 788889999999987
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeC----CCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDA----DKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~----~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
+..+. .++||+||+++ ++..+.++++.+.+.|+|||++++--
T Consensus 188 ~~~~~------------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTES------------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccc------------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 64221 36899999995 25788999999999999999999764
No 14
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.67 E-value=1.2e-15 Score=118.97 Aligned_cols=116 Identities=23% Similarity=0.343 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+.|.....+...+...+..+|||||||+|+.+..+++..+++++|+++|+++++++.++++++..+. .+++++++|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCccc
Confidence 3455555566666677889999999999999999998876568999999999999999999999887 589999999865
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+ ..++||+|+++....... +.+.+.|+|||.+++.
T Consensus 139 ~~~------------~~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 GYE------------ENAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCC------------cCCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence 432 156899999987654433 4566789999998873
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=1e-15 Score=116.53 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=87.7
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++.++||+|||+|..+..++...+ +++|+++|+++.+++.++++.++.++. +++++++|+.+.. .
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--~-------- 106 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--H-------- 106 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--c--------
Confidence 445689999999999999999987655 689999999999999999999988874 6999999987641 1
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++++ ..++.++++.+.+.|+|||.+++.
T Consensus 107 ---~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 ---EEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ---cCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 56899999987 556778888999999999999864
No 16
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=117.65 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=86.3
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
+...+..+|||+|||+|+.+..+++.+++.++|+++|+++++++.|++++...++..+++++.+|..+.++.
T Consensus 68 l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------- 139 (205)
T PRK13944 68 IEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------- 139 (205)
T ss_pred cCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--------
Confidence 344456799999999999999999887656899999999999999999999988877899999998654321
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||.|+++....+.. +.+.+.|+|||.+++.
T Consensus 140 ----~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 ----HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIP 172 (205)
T ss_pred ----CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence 46899999987644333 4677899999999874
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.6e-15 Score=118.12 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=94.2
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|-.++.+++..+ .++|+++|+|+.+++.|++.+...+... ++|+++|++.. | +.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-----------f~ 116 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-----------FP 116 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-----------CC
Confidence 689999999999999999999987 8999999999999999999999888755 99999999765 2 34
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
+++||+|.+... -.++...++.+.+.|||||.+++.+...
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 889999999865 4577889999999999999999877764
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=1.2e-15 Score=120.53 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=82.6
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
++...++.+|||+|||+|.++..+++..++.++|+++|+++.+++.|++.+...+.. +++++++|+.+. + +
T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~------ 112 (233)
T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F------ 112 (233)
T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------
T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C------
Confidence 345567789999999999999999988776789999999999999999999988774 999999999764 2 2
Q ss_pred ccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 94 TKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.+++||.|++... ..+....++++.+.|||||.+++-+..
T Consensus 113 ----~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 113 ----PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -----TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ----CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 2789999998865 346788999999999999999887664
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=3.1e-15 Score=114.37 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=86.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|..++.++...+ .++|+++|+++++++.|+++.++.++. +++++++|..+...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~------------- 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ------------- 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-------------
Confidence 478999999999999999998766 789999999999999999999999985 49999999866411
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++... .++..+++.+.+.|+|||.+++.
T Consensus 110 ~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 EEKFDVVTSRAV-ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCCccEEEEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence 458999999763 45778999999999999998875
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.65 E-value=1.6e-15 Score=112.18 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=89.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+|||+|||+|..+..++..+.+.++++++|+++++++.|++.++..+.. +++|+++|..+ ++...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~--------- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL--------- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS---------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc---------
Confidence 35789999999999999999965544799999999999999999999999986 99999999987 33200
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.++||+|++... .......++.+.+.|++||.+++.+..
T Consensus 71 -~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 268999999875 334557899999999999999987665
No 21
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=2.8e-15 Score=117.05 Aligned_cols=114 Identities=23% Similarity=0.344 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
|.....+..++...+..+|||||||+|+.+..+++..+.+++|+++|+++++++.|++++++.++ ++++++.+|..+..
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence 33334444455666778999999999999999998876568899999999999999999999988 68999999986543
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+. ..+||+|+++....... +.+.+.|+|||.+++.
T Consensus 142 ~~------------~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EP------------LAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP 176 (215)
T ss_pred cc------------cCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence 21 46899999987654443 4567889999998873
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=2.2e-15 Score=113.56 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
.+. +|...+...+..++||+|||+|..++.++...+ ..+++++|+++.+++.++++++..++.. ++++..|..+..+
T Consensus 19 ~t~-lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 19 GTR-LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP 95 (170)
T ss_dssp HHH-HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC
T ss_pred HHH-HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc
Confidence 444 444444444888999999999999999999876 6789999999999999999999999866 9999999865422
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCC----c----CcHHHHHHHHhccCCCeEEEE
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADK----D----NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~----~----~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|+++++. . ...++++.+.+.|+|||.+++
T Consensus 96 -------------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 -------------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -------------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 5799999999862 1 246788889999999998754
No 23
>PRK00811 spermidine synthase; Provisional
Probab=99.64 E-value=1.6e-14 Score=117.32 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=87.8
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC----CCCceEEEeCCchhHHHHHHhhh
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG----VAHKIDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~ 91 (192)
...++++||+||||.|..+.++++.. ...+|++||+++++++.|++++...+ -.++++++.+|+..+++..
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~---- 147 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET---- 147 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC----
Confidence 34578999999999999999998763 35799999999999999999987543 2478999999998887642
Q ss_pred hcccccCCCcccEEEEeCCCc-------CcHHHHHHHHhccCCCeEEEEe
Q 029536 92 SSTKEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 148 -------~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 -------ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred -------CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 67899999996411 1257889999999999999863
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.63 E-value=1.2e-14 Score=111.82 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
.++...++...+...+..+|||+|||+|..+..++...+ .++++++|+++++++.++++++..+. .+++++.+|+.+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~ 102 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH
Confidence 344555555555656678999999999999999987655 68999999999999999999998887 5799999998665
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++.+ ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus 103 ~~~~-----------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQL-----------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhC-----------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 4432 345788888764 3457889999999999999988643
No 25
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.62 E-value=3.8e-16 Score=108.71 Aligned_cols=102 Identities=32% Similarity=0.587 Sum_probs=52.3
Q ss_pred EEEccchhHHHHHHHHhCCCCc--EEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 24 MEIGVFTGYSLLATALAIPDDG--KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 24 leiG~g~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
||||+..|.++++++++++++. +++++|+.+. .+.+++.+++.++..+++++.+++.+.++.+. .++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----------~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----------DGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----------H--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----------CCC
Confidence 6999999999999999887554 7999999986 44556666667777899999999999988774 479
Q ss_pred ccEEEEeCCC--cCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 102 FDFVFVDADK--DNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 102 ~D~v~id~~~--~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
||++++|+++ +.....++.+.++|+|||+|++||+
T Consensus 70 ~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 70 IDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9999999984 5567789999999999999999984
No 26
>PRK01581 speE spermidine synthase; Validated
Probab=99.62 E-value=3.1e-14 Score=117.80 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=86.8
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHH--HH---HcCC-CCceEEEeCCchhHHHHHH
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQ---KAGV-AHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~--~~---~~~~-~~~v~~~~~d~~~~~~~~~ 88 (192)
+...+|++||+||||.|..+..+++. ++..++++||+++++++.|+++ +. +..+ .++++++.+|+.++++..
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 34678999999999999999988876 3368999999999999999973 22 2222 479999999999887653
Q ss_pred hhhhcccccCCCcccEEEEeCCCc--------CcHHHHHHHHhccCCCeEEEEe
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 224 ----------~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 ----------SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ----------CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999996521 1257899999999999999875
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=9.4e-15 Score=116.90 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=87.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||+|||+|..+..++.. +.+|+++|+++++++.|++++...++.++++++++|..+..+..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc----------
Confidence 35679999999999999999875 57899999999999999999999888889999999987753322
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++... ..+...+++.+.+.|||||++++.
T Consensus 110 -~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 110 -ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred -CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 578999998754 245567899999999999998764
No 28
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.62 E-value=3.8e-14 Score=115.14 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhH----cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC
Q 029536 4 SPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (192)
Q Consensus 4 ~~~~~~~l~~l~~~----~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 79 (192)
.+++..++...+.. .++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++++...++.++++++.+|
T Consensus 102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D 180 (284)
T TIGR03533 102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180 (284)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 45666666665441 2457999999999999999998876 689999999999999999999999987789999999
Q ss_pred chhHHHHHHhhhhcccccCCCcccEEEEeCCCc----------------------------CcHHHHHHHHhccCCCeEE
Q 029536 80 ALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVI 131 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~----------------------------~~~~~~~~~~~~L~~gG~l 131 (192)
..+.++ .++||+|+++++.. .+..++..+.+.|+|||.+
T Consensus 181 ~~~~~~-------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l 247 (284)
T TIGR03533 181 LFAALP-------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVL 247 (284)
T ss_pred hhhccC-------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 754321 45799999986510 1245677778999999999
Q ss_pred EEe
Q 029536 132 GYD 134 (192)
Q Consensus 132 v~~ 134 (192)
++.
T Consensus 248 ~~e 250 (284)
T TIGR03533 248 VVE 250 (284)
T ss_pred EEE
Confidence 874
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.61 E-value=1.9e-14 Score=113.21 Aligned_cols=108 Identities=21% Similarity=0.392 Sum_probs=89.2
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++...+. ++++++.+|..+. + +
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-------- 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-------- 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C--------
Confidence 444567999999999999999998876578999999999999999999987777 6899999998653 1 1
Q ss_pred ccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 96 EKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
..++||+|++... ..++..+++.+.+.|+|||.+++.+.
T Consensus 111 --~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 --DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred --CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 2578999998754 34567889999999999999987554
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=6.7e-15 Score=113.96 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
+.+..+.+.+.. +..+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...+. ++++++++|+.+.+
T Consensus 28 ~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l 103 (202)
T PRK00121 28 PAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVL 103 (202)
T ss_pred CCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHH
Confidence 344455555555 567999999999999999998776 67999999999999999999988877 68999999983333
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCC------c-----CcHHHHHHHHhccCCCeEEEEe
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADK------D-----NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~------~-----~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+... .+++||.|++.... . ....+++.+.+.|+|||++++.
T Consensus 104 ~~~~---------~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 104 LDMF---------PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHc---------CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 3211 25689999986421 0 2567899999999999999864
No 31
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.8e-14 Score=115.48 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC
Q 029536 2 MTSPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (192)
Q Consensus 2 ~~~~~~~~~l~~l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 78 (192)
.++.++..-++.++. ..+++++||||||-|..++++|+.. +.+|+++++|+++.+.+++.++..|++.+++++..
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~ 129 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ 129 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec
Confidence 455566665666554 4567899999999999999999987 68999999999999999999999999889999999
Q ss_pred CchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 79 PALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
|..++ .++||-|+.-+. ++++.++|+.+.+.|+|||.++++.+...
T Consensus 130 d~rd~---------------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 130 DYRDF---------------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred ccccc---------------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 98766 456999886543 67799999999999999999999877643
No 32
>PLN02366 spermidine synthase
Probab=99.60 E-value=9e-14 Score=113.83 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=88.7
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC--C-CCceEEEeCCchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
..++++||+||||.|..+.+++++ +...+++.+|+++..++.+++++...+ + +++++++.+|+..++....
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence 467899999999999999999987 445799999999999999999987642 2 4699999999988876531
Q ss_pred ccccCCCcccEEEEeCCCc-------CcHHHHHHHHhccCCCeEEEEe
Q 029536 94 TKEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|.... ...++++.+.+.|+|||+++..
T Consensus 163 -----~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 163 -----EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred -----CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 46899999997521 2357899999999999999753
No 33
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.3e-14 Score=113.75 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+.|....++-..+...++.+|+|.|+|+|..+.+||.+..+.++|++.|+.+++++.|++|++.+++.+++++..+|..+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 34555667777788889999999999999999999998877899999999999999999999999998889999999876
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
... ...||.||+|.+. .+++++.+.+.|+|||.+++
T Consensus 158 ~~~-------------~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 158 GID-------------EEDVDAVFLDLPD--PWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccc-------------ccccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEE
Confidence 543 4589999999753 48899999999999999886
No 34
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=110.86 Aligned_cols=110 Identities=21% Similarity=0.336 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
|.....|-.++...++.+|||||||+|+.+..|++.. ++|+++|..++..+.|+++++..|+. +|.++++|...-+
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCC
Confidence 4344445555677788999999999999999999874 49999999999999999999999994 5999999987655
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+. ..+||.|++.+......+ .+.+.|++||.+++
T Consensus 134 ~~------------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~ 167 (209)
T COG2518 134 PE------------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVI 167 (209)
T ss_pred CC------------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEE
Confidence 43 579999999887444332 35578899999886
No 35
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=9.4e-14 Score=119.04 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
....++..++...++.+|||+|||+|+.+..++......++|+++|+++.+++.++++++..|+. +++++++|+.+...
T Consensus 239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~ 317 (434)
T PRK14901 239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLE 317 (434)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccc
Confidence 34455555666666789999999999999999988765689999999999999999999999984 69999999876532
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcC-------------------------cHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
... ...++||.|++|++-.. ..++++.+.+.|||||.|++..+...
T Consensus 318 ~~~--------~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~- 388 (434)
T PRK14901 318 LKP--------QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH- 388 (434)
T ss_pred ccc--------cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-
Confidence 110 01468999999975110 24678888999999999997654321
Q ss_pred cccCCCCCCchhhhhhHHHHHHHHHHHhhcCCCeeEE-----Eeec---CCeeEEEEE
Q 029536 141 SVVAPPDADLDEHFLYLRDFVQELNKALAVDPRIEIC-----QISI---ADGVTLCRR 190 (192)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~---~~G~~i~~k 190 (192)
+. +-...+.+| +..+|+|+.. +.|- .||+-+|+-
T Consensus 389 ----~~---------Ene~~v~~~---l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 389 ----PA---------ENEAQIEQF---LARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred ----hh---------hHHHHHHHH---HHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 11 112344444 4456777544 3453 489988853
No 36
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=3.9e-14 Score=113.80 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=87.5
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHH--cCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK--AGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
...++.+|||+|||+|..+..+++..++.++|+++|+++++++.|++.... .....+++++++|..+. + +
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~------ 141 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F------ 141 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C------
Confidence 344678999999999999999988765468999999999999999876542 22335899999998653 1 1
Q ss_pred ccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 94 TKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.+++||+|++... ..+...++.++.+.|||||.+++.+...
T Consensus 142 ----~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 142 ----DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ----CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 2678999988654 3456788999999999999998877653
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.8e-14 Score=101.55 Aligned_cols=101 Identities=23% Similarity=0.367 Sum_probs=85.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
.+|||+|||+|..++.+++.. ..+++++|++|..++.++.++...+..++++++++|..+..+.+ ..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----------~~~ 69 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----------PDG 69 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----------TTT
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----------cCc
Confidence 589999999999999999885 58999999999999999999999999889999999997776443 268
Q ss_pred cccEEEEeCCCc-----------CcHHHHHHHHhccCCCeEEEE
Q 029536 101 TFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 101 ~~D~v~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+||+|+.+++.. .+..+++.+.++|+|||++++
T Consensus 70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999999998722 246789999999999998875
No 38
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.58 E-value=1.8e-13 Score=110.39 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=87.2
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC---CCceEEEeCCchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
..+|++||+||||.|..+..+++..+ ..+++++|+++++++.+++++...+. .++++++.+|+..++...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence 45688999999999999999887653 57899999999999999998865431 367999999998887653
Q ss_pred ccccCCCcccEEEEeCCC-----cC--cHHHHHHHHhccCCCeEEEEe
Q 029536 94 TKEKYHGTFDFVFVDADK-----DN--YVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~-----~~--~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|... .+ ..++++.+.+.|+|||++++.
T Consensus 143 -----~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 -----ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -----CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5789999999751 11 367889999999999999975
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=6.8e-14 Score=116.39 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=88.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||||||+|..+..++... +.+|+++|+++.+++.++++.+..+..++++++.+|..+. + +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~---------- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F---------- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C----------
Confidence 346799999999999999999875 5799999999999999999998888878899999998653 1 1
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.+++||+|++... ..+...+++.+.+.|||||.+++.+..
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 2679999998544 334577899999999999999886643
No 40
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=112.24 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=98.7
Q ss_pred HHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHH
Q 029536 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 8 ~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 87 (192)
+-+|...+......+|||+|||+|..++.+|...+ ..++++||+++++++.|+++++..+++++++++++|..++.+..
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 45788888888889999999999999999998866 49999999999999999999999999999999999998887655
Q ss_pred HhhhhcccccCCCcccEEEEeCC------C---------------cCcHHHHHHHHhccCCCeEEEE
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD------K---------------DNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~------~---------------~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
. ..+||+|+++++ . ....++++.+..+|||||.+.+
T Consensus 112 ~----------~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 112 V----------FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred c----------ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 2 457999999876 0 1235677888899999998875
No 41
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.56 E-value=3.4e-13 Score=113.99 Aligned_cols=110 Identities=16% Similarity=0.293 Sum_probs=90.1
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC-CceEEEeCCchhHHHHHHhhhhcc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
...++++|||+|||+|..++..+.. ...+|+++|+++.+++.|++|++.+++. .+++++++|+.+++..+...
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---- 290 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---- 290 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc----
Confidence 3456889999999999998876643 2569999999999999999999999986 58999999999888765432
Q ss_pred cccCCCcccEEEEeCCC------------cCcHHHHHHHHhccCCCeEEEEeC
Q 029536 95 KEKYHGTFDFVFVDADK------------DNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.++||+|++|++. ..|.+++..+.++|+|||+++.-.
T Consensus 291 ----~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 291 ----GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ----CCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4689999999872 235666777889999999888643
No 42
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=5.8e-14 Score=115.15 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHhH--c-C-CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC
Q 029536 4 SPDEAQFFSMLLKL--I-N-AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (192)
Q Consensus 4 ~~~~~~~l~~l~~~--~-~-~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 79 (192)
.+++..++...+.. . + +.+|||+|||+|..++.++...+ +.+++++|+++.+++.|+++++..++.++++++++|
T Consensus 114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 34566666654431 1 2 36899999999999999998876 789999999999999999999999987789999999
Q ss_pred chhHHHHHHhhhhcccccCCCcccEEEEeCCCc----------------------------CcHHHHHHHHhccCCCeEE
Q 029536 80 ALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVI 131 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~----------------------------~~~~~~~~~~~~L~~gG~l 131 (192)
..+.++ .++||+|+++++.. .+..+++.+.+.|+|||.+
T Consensus 193 ~~~~l~-------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l 259 (307)
T PRK11805 193 LFAALP-------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVL 259 (307)
T ss_pred hhhhCC-------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEE
Confidence 754321 35799999986410 1345677888999999999
Q ss_pred EEe
Q 029536 132 GYD 134 (192)
Q Consensus 132 v~~ 134 (192)
++.
T Consensus 260 ~~E 262 (307)
T PRK11805 260 VVE 262 (307)
T ss_pred EEE
Confidence 874
No 43
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=1.5e-13 Score=118.20 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
.+...++..++...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++++.++. +++++++|+.+..
T Consensus 236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~ 314 (444)
T PRK14902 236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVH 314 (444)
T ss_pred ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCccccc
Confidence 345566666666667789999999999999999988754689999999999999999999999985 5999999987654
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcC-------------------------cHHHHHHHHhccCCCeEEEEeCc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
+.+ .++||+|++|++... ..++++.+.+.|||||.+++..+
T Consensus 315 ~~~-----------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 315 EKF-----------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred chh-----------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 333 368999999976210 13568888899999999996543
No 44
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.55 E-value=2.8e-14 Score=110.74 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
|..-..+-.++...+..+|||||||+|+.+..++....+.++|+++|+++...+.|++++...+. .++.++++|...-+
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhcc
Confidence 33333344444567788999999999999999998876678999999999999999999999988 48999999986654
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+. ..+||.|++.+...... ..+.+.|++||.+++
T Consensus 137 ~~------------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 137 PE------------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVA 170 (209)
T ss_dssp GG------------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred cc------------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEE
Confidence 32 46899999987654333 346678999999986
No 45
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=3.3e-13 Score=115.51 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
+...++..++...++.+|||+|||+|+.|..++..+...++|+++|+++++++.+++++++.|+. ++++.++|+..+..
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~ 302 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE 302 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh
Confidence 34556666666677889999999999999999988765789999999999999999999999984 69999999876432
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCc-------------------------CcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.. .++||.|++|++.. ...++++.+.+.|+|||.+++.-+.
T Consensus 303 ~~-----------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 303 YV-----------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred hh-----------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22 46899999997621 1145678889999999999976543
No 46
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=4.1e-14 Score=114.15 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 4 SPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 4 ~~~~~~~l~~l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
..++.+-+..++. ..++.+|||||||.|..+.++++.. +.+|+++++|++..+.+++.+++.|+.+++++...|.
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec
Confidence 3445555555554 4567899999999999999999886 5799999999999999999999999999999999987
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.++ ..+||.|+.-.. ..++..+|+.+.++|+|||.++++.+..
T Consensus 122 ~~~---------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 122 RDL---------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp GG------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ccc---------------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 654 458999886543 3567899999999999999999876654
No 47
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.54 E-value=8.2e-14 Score=108.48 Aligned_cols=113 Identities=21% Similarity=0.330 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+.|.....+..++...+..+|||+|||+|+.+..++... .+++++|+++++++.+++++++.++ .++++..+|..+
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 137 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWK 137 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCccc
Confidence 456666666666666777899999999999999888763 4899999999999999999999887 469999999754
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 138 ~~~~------------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 138 GWPA------------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred CCCc------------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 3221 4689999998764433 45677899999998874
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=4e-13 Score=103.39 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=86.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+...+||||||+|..+..++...| +..++++|+++++++.|++++...++ .+++++++|+.++.+... .
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~---------~ 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFF---------P 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhC---------C
Confidence 556899999999999999998876 78999999999999999999998888 489999999987654432 1
Q ss_pred CCcccEEEEeCCC---c--C------cHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADK---D--N------YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~---~--~------~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.+|.|+++.+. . + ..++++.+.+.|+|||.+++
T Consensus 85 ~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 85 DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 4589999987531 1 1 25789999999999998876
No 49
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.54 E-value=8.6e-14 Score=110.33 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
-|....++-..+...++.+|||.|+|+|..+.+|++.+.+.++|++.|..++.++.|+++++.+++.+++++.+.|..+.
T Consensus 25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE 104 (247)
T ss_dssp -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG
T ss_pred eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc
Confidence 45566677777888999999999999999999999988778999999999999999999999999999999999998532
Q ss_pred -HHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhcc-CCCeEEEE
Q 029536 84 -LDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELV-KVGGVIGY 133 (192)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L-~~gG~lv~ 133 (192)
++.- .+..+|.||+|-+. .++.+..+.+.| ++||.|++
T Consensus 105 g~~~~----------~~~~~DavfLDlp~--Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 105 GFDEE----------LESDFDAVFLDLPD--PWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp --STT-----------TTSEEEEEEESSS--GGGGHHHHHHHE-EEEEEEEE
T ss_pred ccccc----------ccCcccEEEEeCCC--HHHHHHHHHHHHhcCCceEEE
Confidence 2110 14689999999863 366678888899 89999985
No 50
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=4.2e-13 Score=115.39 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=92.5
Q ss_pred HHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHH
Q 029536 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (192)
Q Consensus 7 ~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 86 (192)
...+...++...++.+|||+|||+|+.+..++..++..++|+++|+++.+++.+++++++.|+ .+++++.+|+.+..+
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~- 315 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSP- 315 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCccccccc-
Confidence 334444555555678999999999999999998776568999999999999999999999998 479999999866421
Q ss_pred HHhhhhcccccCCCcccEEEEeCCCc-------------------------CcHHHHHHHHhccCCCeEEEEeCc
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.++||.|++|++.. ....++..+.+.|+|||.+++..+
T Consensus 316 ------------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 316 ------------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ------------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 46899999996510 012478888899999999998654
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.53 E-value=1.5e-13 Score=110.77 Aligned_cols=111 Identities=20% Similarity=0.350 Sum_probs=90.2
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++.+|||+|||+|..+..++......++++++|+++.+++.|+++....+. ++++++.+|..+. + +
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l-~-~-------- 142 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEAL-P-V-------- 142 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhC-C-C--------
Confidence 345678999999999999888887765567999999999999999999988887 5899999987543 1 1
Q ss_pred ccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 96 EKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 96 ~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
.+++||+|+.... ..+....++.+.+.|||||.+++.++...
T Consensus 143 --~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 143 --ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred --CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 2568999997754 33456789999999999999999877644
No 52
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.5e-13 Score=106.04 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=81.5
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++....++ .++++...|..+. .+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~--~~-------- 92 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNL--TF-------- 92 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhC--Cc--------
Confidence 3456789999999999999999975 56899999999999999999988777 4688888887543 11
Q ss_pred ccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|++... ......+++.+.+.|+|||.+++
T Consensus 93 ---~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 ---DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ---CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 457999987644 22356789999999999998544
No 53
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=2.1e-13 Score=110.87 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhH---cCC-CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 5 PDEAQFFSMLLKL---INA-KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 5 ~~~~~~l~~l~~~---~~~-~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
|++..++...... .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.|++++...++..+++++.+|.
T Consensus 96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~ 174 (284)
T TIGR00536 96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL 174 (284)
T ss_pred CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence 4556666665432 223 6899999999999999998876 6899999999999999999999998876799999987
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCCc----------------------------CcHHHHHHHHhccCCCeEEE
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~----------------------------~~~~~~~~~~~~L~~gG~lv 132 (192)
.+.++ ..+||+|+.+++.. .+..++..+.+.|+|||+++
T Consensus 175 ~~~~~-------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 175 FEPLA-------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred hccCc-------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 54321 34799999875410 23456777888999999998
Q ss_pred Ee
Q 029536 133 YD 134 (192)
Q Consensus 133 ~~ 134 (192)
+.
T Consensus 242 ~e 243 (284)
T TIGR00536 242 CE 243 (284)
T ss_pred EE
Confidence 74
No 54
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=3.9e-13 Score=106.52 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+..+|||+|||+|..+..++..++ ++.+++++|+++.+++.|+++++..+...+++++++|..+..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE------------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------------
Confidence 557899999999999999998753 378999999999999999999988776678999999886541
Q ss_pred CCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 98 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 98 ~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
...+|+|++... ......+++.+.+.|+|||.+++.+...
T Consensus 120 -~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 120 -IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred -CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 235898877643 1234678999999999999999987643
No 55
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=2.1e-13 Score=105.04 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
.+++. +...++.+|||+|||+|..+.+++.. +.+|+++|+++.+++.+++..+..++. +++...|.... .+
T Consensus 21 ~l~~~-~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~- 91 (195)
T TIGR00477 21 AVREA-VKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL- 91 (195)
T ss_pred HHHHH-hccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc-
Confidence 34433 44556789999999999999999974 578999999999999999988877763 67777775432 11
Q ss_pred hhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 89 QDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+++||+|+.... ......+++.+.+.|+|||++++-
T Consensus 92 ----------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 ----------NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ----------cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 457999987643 234567889999999999985543
No 56
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.52 E-value=1.8e-13 Score=109.13 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=85.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhC-CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+..+|||+|||+|..+..++..+ .++.+++++|+++.+++.|++++...+...+++++++|..+..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~------------- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------------- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-------------
Confidence 56799999999999999988753 2478999999999999999999998888778999999976531
Q ss_pred CCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
...+|+|++... ......+++.+.+.|+|||.+++.+..
T Consensus 123 -~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 123 -IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 245898886543 123467899999999999999987644
No 57
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=2.3e-12 Score=102.90 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhH-cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 6 ~~~~~l~~l~~~-~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
.....+..+... .++++|||+|||+|..++.+++. . ..+++++|+++.+++.|++++...++..++.+..+
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~------ 176 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG------ 176 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC------
Confidence 344455555543 46789999999999998877654 3 34799999999999999999998877544443322
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..+||+|+++........+++.+.+.|+|||.+++.++.
T Consensus 177 --------------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 177 --------------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 226999998776555677888999999999999987654
No 58
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.51 E-value=8.7e-13 Score=112.86 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
....++..++...++.+|||+|||+|+.+..++..++ .++++++|+++++++.+++++++.++..++.+..+|......
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4455666666666778999999999999999999876 789999999999999999999999886444556666543211
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcC-------------------------cHHHHHHHHhccCCCeEEEEeCcc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.. ..++||.|++|++... ..++++.+.+.|||||.+++..+-
T Consensus 304 ~~----------~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 304 WA----------ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cc----------cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 1568999999965110 246788889999999999986553
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=1e-13 Score=107.88 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=90.4
Q ss_pred HHHHHHHhH---cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 9 QFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 9 ~~l~~l~~~---~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
.+++..+.. ....+|||+|||-|..+..||+. +.+|+++|++++.++.|+....+.++ .+++.+...++...
T Consensus 46 ~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~ 120 (243)
T COG2227 46 DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS 120 (243)
T ss_pred hhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh
Confidence 344444443 56789999999999999999986 58999999999999999999888777 36677777666543
Q ss_pred HHHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
. .++||+|++-.. ..+...++..+.+++||||.+++..+.
T Consensus 121 ~------------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 121 A------------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred c------------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 2 589999998765 345567999999999999999987765
No 60
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=9.7e-14 Score=108.73 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=87.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
++|||||||+|..+..+++..+ +.+++++|+++++++.+++++...++.++++++..|.... + . .+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~-----------~~ 66 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F-----------PD 66 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C-----------CC
Confidence 4799999999999999998875 6799999999999999999999999988999999987443 1 1 45
Q ss_pred cccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 101 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 101 ~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+||+|+.... ..+...+++.+.+.|+|||.+++.+..
T Consensus 67 ~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 67 TYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 8999986432 345678999999999999999998764
No 61
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=113.64 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=99.8
Q ss_pred HHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC-CceEEEeCCchhHHHHHHh
Q 029536 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 89 (192)
-..+....++++||++-|.||..++..|... ..++|+||.|...++.|++|++-++++ .++.++++|+.++++....
T Consensus 209 R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~ 286 (393)
T COG1092 209 RRALGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER 286 (393)
T ss_pred HHHHhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh
Confidence 3445555668999999999999999988652 359999999999999999999999985 5789999999999998865
Q ss_pred hhhcccccCCCcccEEEEeCC------------CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 90 DVSSTKEKYHGTFDFVFVDAD------------KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~------------~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
+ ..+||+|++|++ ..+|.+.+..+.++|+|||++++..+..
T Consensus 287 ~--------g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 R--------GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred c--------CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 5 679999999987 2356778888899999999998866554
No 62
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=8.4e-13 Score=112.98 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
....++..++...++.+|||+|||+|..+..++...+ +++|+++|+++.+++.+++++++.++. ++++++|+.+...
T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~ 307 (427)
T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ 307 (427)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence 3445555566666788999999999999999998875 489999999999999999999998873 7899999865422
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcC-------------------------cHHHHHHHHhccCCCeEEEEeCc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.. ..++||.|++|++... ..++++.+.+.|||||.+++..+
T Consensus 308 ~~----------~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 308 WW----------DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred hc----------ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 1468999999976211 12578888899999999997654
No 63
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=1.9e-13 Score=112.54 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=84.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||||||+|..+..+++. +.+|++||+++++++.|+++....+...+++++++++.+. +. .
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~-----------~ 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-AD-----------E 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hh-----------c
Confidence 4468999999999999988863 6799999999999999998876655556899999998654 21 1
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.++||+|++... ..+...+++.+.+.|||||.+++....
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 578999998654 345678999999999999999987643
No 64
>PLN02823 spermine synthase
Probab=99.50 E-value=1.3e-12 Score=108.13 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=87.5
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC---CCCceEEEeCCchhHHHHHHhhhh
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---VAHKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
...+|++||.||+|.|..+.++++..+ ..++++||++++.++.+++++...+ -.++++++.+|+..+++..
T Consensus 100 ~~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~----- 173 (336)
T PLN02823 100 HHPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR----- 173 (336)
T ss_pred hCCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----
Confidence 445789999999999999999988643 5789999999999999999986432 2479999999999988543
Q ss_pred cccccCCCcccEEEEeCCCc---------CcHHHHH-HHHhccCCCeEEEEe
Q 029536 93 STKEKYHGTFDFVFVDADKD---------NYVNYHK-RLIELVKVGGVIGYD 134 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~ 134 (192)
.++||+||+|.... ...++++ .+.+.|+|||++++.
T Consensus 174 ------~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 174 ------DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ------CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999995421 1357887 899999999999863
No 65
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=9.9e-13 Score=101.44 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
++..+....+..++||+|||+|..++.++... ..+|+++|.+++.++.+++|++..++ .+++++++|..+.++..
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~-- 118 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQP-- 118 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhc--
Confidence 44555444567899999999999998755443 46899999999999999999999987 47999999987765432
Q ss_pred hhhcccccCCCcccEEEEeCC-CcC-cHHHHHHHHh--ccCCCeEEEEe
Q 029536 90 DVSSTKEKYHGTFDFVFVDAD-KDN-YVNYHKRLIE--LVKVGGVIGYD 134 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~ 134 (192)
..+||+||+|++ ... ....++.+.+ +|+|++++++.
T Consensus 119 ---------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 119 ---------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred ---------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 457999999998 333 3445555544 47899988875
No 66
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.50 E-value=7.1e-13 Score=106.64 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=90.8
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
.+...++...++.+|||+|||+|..+..++..++..+.|+++|+++.+++.+++++++.++ .+++++..|+..+.. .
T Consensus 61 ~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~-~- 137 (264)
T TIGR00446 61 MIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA-A- 137 (264)
T ss_pred HHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh-h-
Confidence 3444445555668999999999999999998876567999999999999999999999988 469999999865422 1
Q ss_pred hhhhcccccCCCcccEEEEeCCCc-------------------------CcHHHHHHHHhccCCCeEEEEeCc
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKD-------------------------NYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.++||.|++|++-. ...++++.+.++|||||+|++.-+
T Consensus 138 ----------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 138 ----------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred ----------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 45699999997511 113578888899999999986543
No 67
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.50 E-value=9.7e-13 Score=100.84 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhH--HHHHHHHhC-CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGY--SLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 79 (192)
.+|+.++||+.|+...+.+.|+|+.+..|. +++.|+.+. ..++++++|-++++.+...++.+...++.+.++|+.++
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 367899999999999999999999776543 455554432 24699999999999988889999988888788999998
Q ss_pred ch-hHHHHHHhhhhcccccCCCcccEEEEeCCCcCcH-HHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhH
Q 029536 80 AL-PLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYL 157 (192)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~-~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~ 157 (192)
.. +.++.+ ...||+++|+..+++. ++|+.+ ++=+.|.++++.|.+..+. .
T Consensus 105 ~~e~~~~~~------------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~-----~---------- 156 (218)
T PF07279_consen 105 APEEVMPGL------------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST-----N---------- 156 (218)
T ss_pred CHHHHHhhc------------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc-----C----------
Confidence 54 466554 4789999999988888 777765 3334566777788765321 0
Q ss_pred HHHHHHHHHHhhcCCCeeEEEeecCCeeEEEE
Q 029536 158 RDFVQELNKALAVDPRIEICQISIADGVTLCR 189 (192)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~p~~~G~~i~~ 189 (192)
-..+...+...+.+.+++||+|.|+.|++
T Consensus 157 ---~~~w~~~~~~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 157 ---GFSWRSVLRGRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred ---CccHHHhcCCCCceeEEEeccCCCeEEEE
Confidence 01233445667789999999999999986
No 68
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.50 E-value=4.2e-13 Score=121.08 Aligned_cols=110 Identities=18% Similarity=0.309 Sum_probs=92.0
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC-CceEEEeCCchhHHHHHHhhhh
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
+....++++|||+|||+|..+++++... ..+|+++|+++.+++.|++|++.+++. .+++++++|..++++..
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence 4445678999999999999999999752 457999999999999999999999986 68999999998877654
Q ss_pred cccccCCCcccEEEEeCCC--------------cCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 93 STKEKYHGTFDFVFVDADK--------------DNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
..+||+|++|++. ..|.+++..+.++|+|||++++...
T Consensus 606 ------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 606 ------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ------CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5689999999872 1346678888899999999987644
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=1.2e-13 Score=95.14 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=73.5
Q ss_pred EEEEccchhHHHHHHHHhCCC--CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 23 TMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
|||+|||+|..+..+++.++. ..+++++|+++++++.++++....+. +++++++|..++ +.. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~-----------~~ 66 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS-----------DG 66 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH-----------SS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc-----------CC
Confidence 799999999999999988732 37999999999999999999987665 899999999774 332 67
Q ss_pred cccEEEEeCC------CcCcHHHHHHHHhccCCCe
Q 029536 101 TFDFVFVDAD------KDNYVNYHKRLIELVKVGG 129 (192)
Q Consensus 101 ~~D~v~id~~------~~~~~~~~~~~~~~L~~gG 129 (192)
+||+|++... +.....+++.+.++|+|||
T Consensus 67 ~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 67 KFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999433 2345678899999999998
No 70
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=2.5e-13 Score=108.65 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=80.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||||||+|..+..++...+ +.+++++|+++.+++.+++++ ++++++.+|..++.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~------------ 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP------------ 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC------------
Confidence 4568999999999999999998876 689999999999999998864 468899998765421
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||+|++... ..+...+++.+.+.|+|||.+++.
T Consensus 91 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 91 -PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 468999998765 335678899999999999999874
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=7.5e-13 Score=107.78 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhH-cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 6 DEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 6 ~~~~~l~~l~~~-~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
.+...+..+... .++++|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...++..++.+..++....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence 333344444433 35689999999999999887764 3 4689999999999999999999988877787777763211
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..++||+|+++........++..+.+.|+|||.+++..+.
T Consensus 222 -------------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 222 -------------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred -------------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1568999999877666678889999999999999987654
No 72
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.5e-12 Score=105.34 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=83.0
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+++++||+|||+|..++..++. . ..+++++|++|-+++.|++|++.+++...++....+..+.. .
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------------~ 226 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------------E 226 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------------c
Confidence 7899999999999999987765 3 57899999999999999999999988653333333322221 1
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.++||+|+.+--.+....+...+.++++|||++++..++
T Consensus 227 ~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 227 NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 469999999886666678888899999999999998776
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.48 E-value=2.8e-13 Score=113.61 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC--CceEEEeCCchhH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPL 83 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~ 83 (192)
.+.-|+..+. .....+|||+|||+|..++.+++..| ..+|+++|+++.+++.++++++..+.. .+++++.+|..+.
T Consensus 216 GtrllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 216 GARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3343444432 22346899999999999999998876 789999999999999999999877653 3789998887433
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCC--c------CcHHHHHHHHhccCCCeEEEEe
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADK--D------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~--~------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
. ...+||+|+++++. . ...+++..+.+.|+|||.+++.
T Consensus 294 ~-------------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 294 V-------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred C-------------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2 14589999998761 1 1246788889999999988765
No 74
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=2.4e-13 Score=108.79 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=78.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||+|||+|..+..++...| +.+++++|+++.+++.|++ .+++++.+|..+..+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~~------------ 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARE--------RGVDARTGDVRDWKP------------ 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHh--------cCCcEEEcChhhCCC------------
Confidence 4568999999999999999998876 6899999999999998876 257888998765421
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++... ..+....++.+.+.|||||.+++.
T Consensus 87 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 87 -KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 568999998764 234577899999999999999875
No 75
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=1.7e-13 Score=92.40 Aligned_cols=92 Identities=24% Similarity=0.360 Sum_probs=73.9
Q ss_pred EEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCccc
Q 029536 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFD 103 (192)
Q Consensus 24 leiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D 103 (192)
||+|||+|..+..+++. + ..+++++|+++++++.+++.... .++.+..+|..++ .+ .+++||
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l--~~----------~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL--PF----------PDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS--SS-----------TT-EE
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC--cc----------cccccc
Confidence 79999999999999988 4 78999999999999999997754 3456888987665 22 278999
Q ss_pred EEEEeCC---CcCcHHHHHHHHhccCCCeEEEE
Q 029536 104 FVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 104 ~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+|++... ..+...+++.+.+.|||||.+++
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 9998765 34677899999999999999985
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.48 E-value=4.9e-13 Score=116.48 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=82.4
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+.+|||+|||+|..++.++...+ +.+++++|+|+.+++.|++++...++.++++++.+|..+.++ .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------------~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------------K 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------------C
Confidence 46899999999999999998876 689999999999999999999998887889999998754321 4
Q ss_pred CcccEEEEeCCC-----------------------------cCcHHHHHHHHhccCCCeEEEEe
Q 029536 100 GTFDFVFVDADK-----------------------------DNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 100 ~~~D~v~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
++||+|+++++. ..|..+++.+.+.|+|||.+++.
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 589999987641 01234556677899999999874
No 77
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=6.3e-14 Score=107.18 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=84.4
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..++.+|.|+|||+|.+|..|++..| ++.++++|.|++|+++|++.+ ++++|..+|..++-+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p----------- 89 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP----------- 89 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-----------
Confidence 45678999999999999999999998 899999999999999998755 689999999877643
Q ss_pred cCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+...|++|.++. ..+..+.|..+...|.|||++.+
T Consensus 90 --~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 90 --EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred --CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 568999998875 45567889999999999999986
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.48 E-value=8.4e-13 Score=104.88 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhHc--CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 5 PDEAQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 5 ~~~~~~l~~l~~~~--~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
++...++..+.... ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|..+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 44556666665544 345899999999999999998876 679999999999999999999988874 79999999765
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCcC-----------------------------cHHHHHHHHhccCCCeEEEE
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKDN-----------------------------YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++ .++||+|+++++... +..+++.+.+.|+|||.+++
T Consensus 149 ~~~-------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 149 PLP-------------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred cCc-------------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 321 568999998765110 23567788899999999987
Q ss_pred e
Q 029536 134 D 134 (192)
Q Consensus 134 ~ 134 (192)
.
T Consensus 216 ~ 216 (251)
T TIGR03534 216 E 216 (251)
T ss_pred E
Confidence 5
No 79
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.48 E-value=1.9e-12 Score=104.59 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=92.2
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC--C-CCceEEEeCCchhHHHHHHhhhh
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
...+|++||.||.|.|..++.++++.+ ..+++.||+++..++.+++++.... . ++|++++.+|+.+++...
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~----- 146 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC----- 146 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----
Confidence 345668999999999999999999865 7899999999999999999987654 2 389999999999998875
Q ss_pred cccccCCCcccEEEEeCCCc-------CcHHHHHHHHhccCCCeEEEEe
Q 029536 93 STKEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||+|++|.... ...++++.+.+.|+++|+++..
T Consensus 147 ------~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 ------EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ------CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 45899999997622 2478999999999999999975
No 80
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.48 E-value=9.3e-13 Score=99.94 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred HHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHH
Q 029536 7 EAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (192)
Q Consensus 7 ~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 86 (192)
...+|...+...++++|||+|||+|..+..++... .+++++|+++++++.+++++...+. +++++.+|..+..
T Consensus 7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-- 79 (179)
T ss_pred cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--
Confidence 34566666677788999999999999999998763 3899999999999999999987765 5888888875431
Q ss_pred HHhhhhcccccCCCcccEEEEeCCCc---------C---------------cHHHHHHHHhccCCCeEEEEeC
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDADKD---------N---------------YVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~~~---------~---------------~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.++||+|+.+.+.. + +.++++.+.+.|+|||.+++-.
T Consensus 80 ------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 ------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 45899999886421 0 3457888889999999887643
No 81
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.46 E-value=1.1e-12 Score=99.87 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhH-cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~-~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+...+.++..|... .+..++||+.||+|..++..++.. ..+|+.||.+++.++..++|++..+...+++++..|+..
T Consensus 26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 34456677777777 789999999999999999877653 479999999999999999999999998889999999988
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCc--C-cHHHHHHHH--hccCCCeEEEEe
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKD--N-YVNYHKRLI--ELVKVGGVIGYD 134 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~--~-~~~~~~~~~--~~L~~gG~lv~~ 134 (192)
.+.+.... ..+||+||+|++.. . +.+.++.+. .+|+++|+|++.
T Consensus 104 ~l~~~~~~--------~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 104 FLLKLAKK--------GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp HHHHHHHC--------TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred HHHhhccc--------CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 88776433 68999999999833 2 366777776 799999999974
No 82
>PRK08317 hypothetical protein; Provisional
Probab=99.46 E-value=4.2e-12 Score=99.64 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=91.2
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
.+...+...++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++.. ....++++..+|.... + +
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~-~-~-- 83 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL-P-F-- 83 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC-C-C--
Confidence 33444555667899999999999999999887447899999999999999988732 2335789998887543 1 1
Q ss_pred hhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCCcc
Q 029536 90 DVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 141 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~ 141 (192)
..++||+|++... ..+...+++.+.+.|+|||.+++.+..+...
T Consensus 84 --------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 130 (241)
T PRK08317 84 --------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL 130 (241)
T ss_pred --------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence 2578999998754 3456788999999999999999887655443
No 83
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.46 E-value=3.7e-12 Score=97.65 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=89.3
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
++..+....+..++||++||+|..++.+++.. ..+++++|.++..++.+++|++..++..+++++.+|..+.+..+..
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~ 117 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK 117 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc
Confidence 33334344578899999999999999988764 3589999999999999999999999877899999999877655421
Q ss_pred hhhcccccCCCcccEEEEeCCC--cCcHHHHHHHH--hccCCCeEEEEe
Q 029536 90 DVSSTKEKYHGTFDFVFVDADK--DNYVNYHKRLI--ELVKVGGVIGYD 134 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~ 134 (192)
. ...||+||+|++. ..+.+.++.+. .+|+++|++++.
T Consensus 118 ~--------~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 118 K--------PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred c--------CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 1 2358999999983 33455566554 479999999875
No 84
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=9.8e-13 Score=103.42 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=81.3
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
+...+..+|||+|||+|..+..+++..+ .++|+++|+++.+++.+.++.+.. .++.++.+|.........
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~------ 137 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH------ 137 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh------
Confidence 4445677999999999999999999876 689999999999998777766543 578999999754211110
Q ss_pred cccCCCcccEEEEeCCCc-CcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKD-NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~-~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..++||+|+.+.... ....+++.+.+.|||||.+++.
T Consensus 138 ---l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 138 ---VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ---ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 135699999876532 2234578899999999999884
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=3.3e-12 Score=103.83 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhHc-CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 5 PDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 5 ~~~~~~l~~l~~~~-~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
+.+.--|+.|.... ++++|||+|||+|..++..++. . ..+|+++|++|.+++.|++|++.+++..++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 44455566666654 4589999999999999987765 3 578999999999999999999999998877663 11111
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHHHHH
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQE 163 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 163 (192)
..++||+|+.+-...........+.++|+|||++++..++.. ....
T Consensus 222 --------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~--------------------~~~~ 267 (295)
T PF06325_consen 222 --------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE--------------------QEDE 267 (295)
T ss_dssp --------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG--------------------GHHH
T ss_pred --------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH--------------------HHHH
Confidence 147999999988766667778888899999999999887642 1223
Q ss_pred HHHHhhcCCCeeEEEe-ecCCeeEEEEEc
Q 029536 164 LNKALAVDPRIEICQI-SIADGVTLCRRI 191 (192)
Q Consensus 164 ~~~~~~~~~~~~~~~~-p~~~G~~i~~k~ 191 (192)
+.+.+. . +|..... .-++...++.||
T Consensus 268 v~~a~~-~-g~~~~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 268 VIEAYK-Q-GFELVEEREEGEWVALVFKK 294 (295)
T ss_dssp HHHHHH-T-TEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHH-C-CCEEEEEEEECCEEEEEEEe
Confidence 333343 3 6666544 356666666654
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.45 E-value=2e-12 Score=103.27 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhHc----CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 6 DEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 6 ~~~~~l~~l~~~~----~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
++..++..+.... .+.++||+|||+|..++.++...+ ..+++++|+++.+++.|++|+...+ ++++++|..
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 4455555554432 235899999999999999998766 5789999999999999999998765 478889886
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeCCCcC-----------------------------cHHHHHHHHhccCCCeEEE
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDADKDN-----------------------------YVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv 132 (192)
+.++... .++||+|++|++... +.++++.+.++|+|||.++
T Consensus 144 ~~l~~~~----------~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 144 DALPTAL----------RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLL 213 (251)
T ss_pred hhcchhc----------CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 6543221 357999999976210 2356667779999999988
Q ss_pred Ee
Q 029536 133 YD 134 (192)
Q Consensus 133 ~~ 134 (192)
+.
T Consensus 214 l~ 215 (251)
T TIGR03704 214 VE 215 (251)
T ss_pred EE
Confidence 64
No 87
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=107.18 Aligned_cols=103 Identities=18% Similarity=0.312 Sum_probs=82.3
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...+..+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..+. +++.++.+|..+..+.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~--------- 146 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPE--------- 146 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccc---------
Confidence 345668999999999999999998775446899999999999999999999887 5799999987654321
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||+|+++....+ ..+.+.+.|+|||.+++.
T Consensus 147 ---~~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 ---FAPYDVIFVTVGVDE---VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ---cCCccEEEECCchHH---hHHHHHHhcCCCCEEEEE
Confidence 357999999865333 234567789999988763
No 88
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.5e-12 Score=105.44 Aligned_cols=114 Identities=21% Similarity=0.355 Sum_probs=87.8
Q ss_pred HHHHHHHHHHH-hH-cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 5 PDEAQFFSMLL-KL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 5 ~~~~~~l~~l~-~~-~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+++..++..+. .. ..+.+|||+|||+|..++.++...+ +.+|+++|+|+++++.|++|...+++ .++.++.+|..
T Consensus 94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf- 170 (280)
T COG2890 94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF- 170 (280)
T ss_pred CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc-
Confidence 56666777644 11 1222799999999999999999987 68999999999999999999999998 67777777543
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--Cc--------------------------CcHHHHHHHHhccCCCeEEEEe
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KD--------------------------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~--------------------------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+.+ .++||+|+.+++ +. .+..+++.+...|+|||++++.
T Consensus 171 --~~~-----------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 171 --EPL-----------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred --ccc-----------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 333 458999998876 11 1234666677899999999874
No 89
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=3.6e-14 Score=97.31 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=62.7
Q ss_pred EEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCccc
Q 029536 24 MEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFD 103 (192)
Q Consensus 24 leiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D 103 (192)
||||||+|..+..++..++ ..+++++|+|+.+++.+++.+...... .......+..+..... ..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~fD 68 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD----------PPESFD 68 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----------C----S
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc----------cccccc
Confidence 7999999999999999886 799999999999999999988887653 3334444333332211 125999
Q ss_pred EEEEeCC---CcCcHHHHHHHHhccCCCeEE
Q 029536 104 FVFVDAD---KDNYVNYHKRLIELVKVGGVI 131 (192)
Q Consensus 104 ~v~id~~---~~~~~~~~~~~~~~L~~gG~l 131 (192)
+|++... ..+...+++++.+.|+|||+|
T Consensus 69 ~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 69 LVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred eehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9998755 345678999999999999986
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.43 E-value=2e-12 Score=109.00 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHhHc-CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~-~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
.|++..++..+.... +..++||+|||+|..++.++...+ +.+++++|+|+++++.|+++++..+. +++++++|..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e 311 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD 311 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence 456777777776543 456899999999999999998766 78999999999999999999988764 79999999754
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCc----------------------------CcHHHHHHHHhccCCCeEEEE
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKD----------------------------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~----------------------------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.. .. ..++||+|+++++.- .+..+++.+.+.|+|||.+++
T Consensus 312 ~~--l~---------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 312 TD--MP---------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred cc--cc---------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 31 10 135799999987620 123455666689999999875
No 91
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=2.2e-12 Score=106.50 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=81.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++++|||||||+|+.+..++...+ .+|+++|+++.++..++..-...+...+++++.++..+. +.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~----------- 186 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA----------- 186 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-----------
Confidence 4678999999999999999998743 479999999988876554333333345799999987554 11
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
.++||+|++... ..+....++.+.+.|+|||.++++.....
T Consensus 187 -~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred -cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 468999998654 34567899999999999999998765443
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.42 E-value=3e-12 Score=105.05 Aligned_cols=108 Identities=15% Similarity=0.052 Sum_probs=88.2
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...+..++||||||+|..+..+++..| +.+++++|. |.+++.+++++.+.++.++++++.+|..+. .
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~--------- 212 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S--------- 212 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C---------
Confidence 344568999999999999999999987 789999998 789999999999999988999999997642 1
Q ss_pred ccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 96 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 96 ~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
...+|+|++... .+....+++++.+.|+|||.+++.|..+.
T Consensus 213 ---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 213 ---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred ---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 124699887653 22235689999999999999999887654
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=99.42 E-value=4.2e-12 Score=96.46 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc-eEEEeCCchhHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLDQL 87 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~ 87 (192)
.++...+...+.+++||+|||+|..+..++.. +.+++++|+++++++.+++++...+...+ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 44444555567789999999999999999876 57899999999999999999988877544 8888888754321
Q ss_pred HhhhhcccccCCCcccEEEEeCCCc------------------------CcHHHHHHHHhccCCCeEEEEe
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+||+|+.+.+.. ....+++.+.+.|+|||.+++.
T Consensus 88 -----------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 -----------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred -----------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34899999875411 1245788889999999987753
No 94
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=2.9e-12 Score=100.74 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=87.3
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+..+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...+++++.+|..+.. . .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------~ 118 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------P 118 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C----------C
Confidence 457999999999999999998876568999999999999999999877666678999999886532 1 1
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.++||+|++... ..+....++.+.+.|+|||.+++.+.
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 568999988653 34567889999999999998887554
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=1.7e-12 Score=105.68 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=81.0
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++.+|||+|||+|..+.+++.. +.+|+++|+++.+++.++++.+..++ ++++...|.... .+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~-------- 181 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI-------- 181 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc--------
Confidence 3456789999999999999999874 57999999999999999999988777 688888876442 11
Q ss_pred ccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|++... ......+++.+.+.|+|||++++
T Consensus 182 ---~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ---QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ---cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 568999987643 23566789999999999998654
No 96
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.42 E-value=2.8e-12 Score=103.70 Aligned_cols=110 Identities=22% Similarity=0.356 Sum_probs=86.2
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC-CceEEEeCCchhHHHHHHhhhh
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA-HKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
+....+.++||++-|.+|..++..+... ..+|++||.|..+++.+++|+..++++ .+++++.+|..+++..+..
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--- 192 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--- 192 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---
T ss_pred HHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---
Confidence 4445678999999999999999877652 468999999999999999999999986 6899999999998887542
Q ss_pred cccccCCCcccEEEEeCC---------CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 93 STKEKYHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|++ ...|.+++..+.++|+|||+|++-
T Consensus 193 ------~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 193 ------GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp ------TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 569999999988 235677888899999999987753
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.5e-12 Score=103.69 Aligned_cols=115 Identities=22% Similarity=0.344 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 5 PDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 5 ~~~~~~l~~l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
+++..++..+.. ..++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++.+|..
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 344555665552 34567999999999999999999876 6899999999999999999988 344468999999874
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeCCCc-----------------------------CcHHHHHHHHhccCCCeEEE
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDADKD-----------------------------NYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv 132 (192)
+..+ .++||+|+.+++.. .+..+++.+.+.|+|||+++
T Consensus 169 ~~~~-------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 169 EPLP-------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred CcCC-------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 3211 36899999875411 12456677779999999998
Q ss_pred Ee
Q 029536 133 YD 134 (192)
Q Consensus 133 ~~ 134 (192)
+.
T Consensus 236 ~e 237 (275)
T PRK09328 236 LE 237 (275)
T ss_pred EE
Confidence 73
No 98
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=104.77 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=83.5
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...+..+|||||||+|..+..++... +.+|+++|+++.+++.|+++... .+++++..+|..+. .+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~~-------- 113 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--DF-------- 113 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--CC--------
Confidence 34466799999999999999998753 57999999999999999987643 35799999987532 11
Q ss_pred ccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 96 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 96 ~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.+++||+|++... ..+...+++.+.+.|||||.+++.+...
T Consensus 114 --~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 114 --PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred --CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2578999998422 1356789999999999999999987644
No 99
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.42 E-value=3.1e-12 Score=101.90 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=87.1
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC---CCceEEEeCCchhHHHHHHhhh
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV---AHKIDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~ 91 (192)
+...+|++||-||.|.|..+..++++. +..++++||++|..++.+++++..... .++++++.+|+..++...
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~---- 146 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET---- 146 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----
Confidence 344579999999999999999998764 368999999999999999999876432 479999999999998764
Q ss_pred hcccccCCC-cccEEEEeCCC-------cCcHHHHHHHHhccCCCeEEEEe
Q 029536 92 SSTKEKYHG-TFDFVFVDADK-------DNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 92 ~~~~~~~~~-~~D~v~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.. +||+|++|... -...++++.+.+.|+|||+++..
T Consensus 147 -------~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 147 -------QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp -------SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred -------cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 44 89999999762 12468999999999999999975
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=4.1e-12 Score=106.40 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=87.0
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
....+||||||+|..++.+|...| +..++|+|+++.+++.+.+.+...++ .++.++.+|+..++..+.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~---------- 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLP---------- 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCC----------
Confidence 346899999999999999999886 78999999999999999999998888 579999999987665442
Q ss_pred CCcccEEEEeCCC-----cC----cHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADK-----DN----YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~-----~~----~~~~~~~~~~~L~~gG~lv~ 133 (192)
++++|.|++..+. .+ ...+++.+.+.|+|||.+.+
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 6799999986531 11 25789999999999998876
No 101
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.41 E-value=3.7e-12 Score=97.77 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhC---CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
.|..-..++.|+...+|+.|+|+|...|+|++++|+.+ ...++|++||++.+.. .++.++.+++.++++++.||+
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCC
Confidence 46666788999999999999999999999999987644 3468999999975443 233344566778999999998
Q ss_pred hhH--HHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhh
Q 029536 81 LPL--LDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLY 156 (192)
Q Consensus 81 ~~~--~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~ 156 (192)
.+. +.+.. +-. ......+|+.|+. ..+....|+...+++++|+++|+.|+............ +.|..+
T Consensus 95 ~d~~~~~~v~----~~~--~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~--~~w~~g 166 (206)
T PF04989_consen 95 IDPEIVDQVR----ELA--SPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD--RPWGPG 166 (206)
T ss_dssp SSTHHHHTSG----SS------SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS------------
T ss_pred CCHHHHHHHH----Hhh--ccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc--cchhhh
Confidence 653 22221 000 1245678999987 57788899999999999999999998754433221100 111110
Q ss_pred HHHHHHHHHHHhhcCCCeeEE
Q 029536 157 LRDFVQELNKALAVDPRIEIC 177 (192)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (192)
..-.++..+++..+++|+.-
T Consensus 167 -~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 167 -NNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp ----HHHHHHHHHTTTTEEEE
T ss_pred -hHHHHHHHHHHHHCCCcEec
Confidence 01244555567778886543
No 102
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.40 E-value=9.2e-12 Score=102.62 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=81.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||+|||+|..++.++.. ..+|+++|+++.+++.|+++++..++ ++++++.+|..++....
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~---------- 237 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ---------- 237 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc----------
Confidence 45789999999999999999974 57899999999999999999999998 68999999997765432
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|++|++.......+...+..++|++++.+
T Consensus 238 -~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 238 -GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred -CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEE
Confidence 45799999998866544444444455788877764
No 103
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.9e-12 Score=103.15 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
...+.-|++.|...... +|||+|||.|..++.+++..| ..+++.+|++..+++.|++|+..++++.. .++..|..+-
T Consensus 144 D~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~ 220 (300)
T COG2813 144 DKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP 220 (300)
T ss_pred ChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence 34555566666665555 999999999999999999987 89999999999999999999999888533 6666665432
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCC----CcCc----HHHHHHHHhccCCCeEEEE
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDAD----KDNY----VNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~----~~~~----~~~~~~~~~~L~~gG~lv~ 133 (192)
. .++||+|+.+++ +... .++++.+.+.|++||-|.+
T Consensus 221 v--------------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 221 V--------------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred c--------------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 2 448999999987 2222 3788999999999996543
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.40 E-value=3.2e-12 Score=106.31 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
..+..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..++. .+++..|....
T Consensus 183 ~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~- 257 (342)
T PRK09489 183 VGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD- 257 (342)
T ss_pred HHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-
Confidence 344545555543 3345899999999999999998766 678999999999999999999988763 56777776432
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCC--------cCcHHHHHHHHhccCCCeEEEE
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADK--------DNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~--------~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
. .++||+|+++++- ....++++.+.+.|+|||.+++
T Consensus 258 --~-----------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 258 --I-----------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred --c-----------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 1 5689999998751 1236788899999999998765
No 105
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.40 E-value=4.1e-12 Score=105.27 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+.|..++.+..++...+..++||.|||+|..+...+.. +.+++++|+++++++.+++|++.+++.. ++++.+|+.+
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~ 241 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK 241 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence 34555666666666667789999999999998876643 5789999999999999999999999865 8899999865
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCC-------c-----CcHHHHHHHHhccCCCeEEEEe
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADK-------D-----NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~-------~-----~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
. +. ..++||+|++|++. . .+.++++.+.+.|+|||.+++-
T Consensus 242 l-~~-----------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 242 L-PL-----------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred C-Cc-----------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 3 21 15689999999751 1 1567888899999999988753
No 106
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=4.1e-12 Score=110.10 Aligned_cols=113 Identities=14% Similarity=0.231 Sum_probs=87.6
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
.++..+ ...++.+|||||||+|..+..++... +.+++++|+++.+++.|+++.. +...++++..+|.... .+
T Consensus 257 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~--~~- 328 (475)
T PLN02336 257 EFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKK--TY- 328 (475)
T ss_pred HHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccC--CC-
Confidence 344433 23456799999999999999999865 5789999999999999998765 3445799999987543 11
Q ss_pred hhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 89 QDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
..++||+|++... ..+...+++.+.+.|+|||.+++.+...
T Consensus 329 ---------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 ---------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ---------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 1568999998644 3456789999999999999999887543
No 107
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=7.4e-12 Score=98.30 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=78.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+|||+|||+|..++.++.. + ..+++++|+++.+++.+++++...+. +++++.+|..+.++
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~------------ 98 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE------------ 98 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc------------
Confidence 34579999999999999998875 3 35899999999999999999988776 58888888755321
Q ss_pred CCCcccEEEEeCCCc------------------------CcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKD------------------------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|+++.+.. .+..+++.+.+.|++||.+++
T Consensus 99 -~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 99 -FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred -CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 56899999986411 024567788899999999886
No 108
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.40 E-value=3e-12 Score=97.82 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
++....+++. +...++.++||+|||.|..+++||+. +..|+++|+++..++++++..++.+++ ++....|..+.
T Consensus 16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~ 89 (192)
T PF03848_consen 16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF 89 (192)
T ss_dssp ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB
T ss_pred CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc
Confidence 3445555554 46678899999999999999999986 678999999999999999988888874 88888887554
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
. + ++.||+|+.... ++....+++.+...++|||++++.
T Consensus 90 ~--~-----------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 90 D--F-----------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S--------------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred c--c-----------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 1 1 568999986532 455677889999999999998874
No 109
>PRK06922 hypothetical protein; Provisional
Probab=99.39 E-value=3.7e-12 Score=112.07 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=87.9
Q ss_pred HHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh
Q 029536 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 90 (192)
...+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|+++....+ .+++++++|..+....+
T Consensus 410 k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f--- 483 (677)
T PRK06922 410 KRIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF--- 483 (677)
T ss_pred HHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc---
Confidence 34455566788999999999999999988776 7899999999999999998876544 36888999986532112
Q ss_pred hhcccccCCCcccEEEEeCC----------------CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 91 VSSTKEKYHGTFDFVFVDAD----------------KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.+++||+|++... ......+++.+.+.|||||.+++.|.
T Consensus 484 -------edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 484 -------EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -------CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2678999987532 12346788899999999999998654
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=5.9e-12 Score=98.90 Aligned_cols=102 Identities=23% Similarity=0.356 Sum_probs=82.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++.+. ++++++.+|..+.. +
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~---------- 94 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L---------- 94 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C----------
Confidence 3457999999999999999998876 6789999999999998887653 37888989876531 1
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..++||+|++... ..+....++.+.+.|+|||.+++....
T Consensus 95 ~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 2578999998754 235678899999999999999986543
No 111
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=1.7e-12 Score=98.58 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=74.0
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
-.++||+|||.|..|..||.. ..+++++|+++.+++.|++.+... ++|++.+.+..++.+ .
T Consensus 44 y~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P-------------~ 104 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP-------------E 104 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----------------S
T ss_pred cceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC-------------C
Confidence 368999999999999999876 468999999999999999988653 589999999877654 7
Q ss_pred CcccEEEEeCC---C---cCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 100 GTFDFVFVDAD---K---DNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 100 ~~~D~v~id~~---~---~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++||+|++... . .....+++.+...|+|||.+|+-..
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 89999999864 1 2334577888899999999998543
No 112
>PRK03612 spermidine synthase; Provisional
Probab=99.39 E-value=4.2e-12 Score=111.07 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=85.5
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHH--HHHc---CC-CCceEEEeCCchhHHHHHHhh
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI--IQKA---GV-AHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~~~~~~~~ 90 (192)
..++++||+||||+|..+..+++. +...+++++|+++++++.++++ +... .+ +++++++.+|+.+++...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 457899999999999999999875 4347999999999999999994 3332 12 368999999998877643
Q ss_pred hhcccccCCCcccEEEEeCCCc--------CcHHHHHHHHhccCCCeEEEEe
Q 029536 91 VSSTKEKYHGTFDFVFVDADKD--------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|++|.... ...++++.+.+.|+|||++++.
T Consensus 371 --------~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 371 --------AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred --------CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 57899999997521 1246889999999999999875
No 113
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.37 E-value=7.2e-12 Score=99.89 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=76.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|..+..++.. +.+++++|+++.+++.++++.. ...++.+|.... + + .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~----------~ 100 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L----------A 100 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C----------C
Confidence 4679999999999999888753 5789999999999999987642 246778887553 1 1 2
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
+++||+|+.... ..+....+..+.+.|+|||.+++...
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 568999998654 34567889999999999999998644
No 114
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.36 E-value=1.5e-11 Score=96.93 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
....++.......+..+|||||||+|..+..+++. ..+++++|+++..++.+++++...+. +++++..+..+...
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 109 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA 109 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh
Confidence 33445555555556789999999999999888865 46899999999999999998877655 57888888765532
Q ss_pred HHHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.. .++||+|++... ..+....++.+.+.|+|||.+++...
T Consensus 110 ~~-----------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 110 EH-----------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hc-----------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 21 578999988643 33556788999999999999988643
No 115
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.36 E-value=6e-12 Score=97.59 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=77.6
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
+....++.+|||+|||+|..+..++..++ ..+++++|+++++++.|++++ +++++.++|..+. +
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~---~------ 101 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDP---F------ 101 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCC---C------
Confidence 33445677999999999999999998765 689999999999999998864 3567788886541 1
Q ss_pred ccccCCCcccEEEEeCCC-----cCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 94 TKEKYHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
..++||+|++.... .....+++.+.+.+ ++++++.+...+
T Consensus 102 ----~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 102 ----KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred ----CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 26799999987652 23456667777765 567777776543
No 116
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.35 E-value=1.2e-11 Score=101.56 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=79.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++++|||+|||+|+.+..++... ...|+++|+++.++..++..-...+...++.+...+..+. +.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~----------- 185 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE----------- 185 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-----------
Confidence 456899999999999998888653 3579999999998876544322223335788888876543 11
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
..+||+||+.+. ..+..+.++.+.+.|+|||.+++.....+
T Consensus 186 -~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~ 229 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVID 229 (314)
T ss_pred -CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEec
Confidence 358999998764 34567899999999999999998765443
No 117
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.34 E-value=2.9e-11 Score=104.03 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCHHHHH-HHHHHHhH---cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe
Q 029536 2 MTSPDEAQ-FFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 2 ~~~~~~~~-~l~~l~~~---~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
++++...+ ++..+... .+..+|||+|||+|..++.++.. ..+++++|+++++++.|+++++..++ ++++++.
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~ 351 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGL-DNVTFYH 351 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 34444433 33334332 34579999999999999999876 36899999999999999999998887 4799999
Q ss_pred CCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 78 GPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+|+.+.+..... ...+||+|++|++.....+.++.+.+ +++++++.+.
T Consensus 352 ~d~~~~l~~~~~--------~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 352 ANLEEDFTDQPW--------ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eChHHhhhhhhh--------hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999776543211 14579999999987666677765544 6888887753
No 118
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.34 E-value=1.6e-11 Score=95.56 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=84.9
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. ...+++++.+|..+.. .
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~--------- 102 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F--------- 102 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C---------
Confidence 3367899999999999999999887644799999999999999998875 3457899999886542 1
Q ss_pred cCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 97 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 97 ~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..++||+|++... ......+++.+.+.|+|||.+++.+..
T Consensus 103 -~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 103 -EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred -CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1568999987643 345678899999999999999876543
No 119
>PRK00536 speE spermidine synthase; Provisional
Probab=99.34 E-value=2.1e-11 Score=97.43 Aligned_cols=101 Identities=9% Similarity=-0.008 Sum_probs=80.9
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC--C-CCceEEEeCCchhHHHHHHhh
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~ 90 (192)
++...+|++||-||.|-|..++.++++ + .+|+.||++++.++.+++++.... + ++|++++.. ..+.
T Consensus 67 l~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~--- 135 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL--- 135 (262)
T ss_pred HhhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc---
Confidence 345678999999999999999999998 4 399999999999999999776532 2 378888751 2211
Q ss_pred hhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 91 VSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..++||+|++|... ..++++.+.+.|+|||+++..
T Consensus 136 -------~~~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 136 -------DIKKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -------cCCcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEEC
Confidence 14689999999653 378889999999999999964
No 120
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.33 E-value=4.6e-11 Score=100.64 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHH-HHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe
Q 029536 2 MTSPDEAQFFSM-LLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 2 ~~~~~~~~~l~~-l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
|+++...+-|.. +.. ..++.++||+|||+|..++.++.. ..+++++|+++.+++.|++|++..++ ++++++.
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~ 287 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAA 287 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 344555544443 322 235689999999999999999853 46899999999999999999999888 4899999
Q ss_pred CCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCc-HHHHHHHHhccCCCeEEEEe
Q 029536 78 GPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNY-VNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~-~~~~~~~~~~L~~gG~lv~~ 134 (192)
+|..+++... ..+||+|++|++.... ...++.+. .++|++++.+.
T Consensus 288 ~d~~~~~~~~-----------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 288 LDSAKFATAQ-----------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCHHHHHHhc-----------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 9997776432 3469999999986543 44555554 57899887753
No 121
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.33 E-value=4.3e-11 Score=102.63 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+..+|||+|||+|..++.+++. ..+|+++|+++.+++.|++|+...++ .+++++.+|+.+.++.+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~-------- 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWA-------- 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhc--------
Confidence 4579999999999999999976 35899999999999999999998887 58999999998776554211
Q ss_pred CCcccEEEEeCCCcC-cHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~~-~~~~~~~~~~~L~~gG~lv~ 133 (192)
..+||+|++|++... ...+++.+. .++|++++.+
T Consensus 360 ~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence 457999999998654 566766654 5889987765
No 122
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.33 E-value=5.3e-11 Score=91.65 Aligned_cols=101 Identities=27% Similarity=0.411 Sum_probs=84.6
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
.+||||||.|.+++.+|...| +..++|+|+....+..+.+.+...++ .|+.++++|+..+++.+. .+++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~---------~~~~ 88 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLF---------PPGS 88 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHS---------TTTS
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcc---------cCCc
Confidence 889999999999999999987 89999999999999999999998888 799999999999888764 2578
Q ss_pred ccEEEEeCC-----Cc------CcHHHHHHHHhccCCCeEEEE
Q 029536 102 FDFVFVDAD-----KD------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 102 ~D~v~id~~-----~~------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+|-|++..+ +. ...++++.+.+.|+|||.|.+
T Consensus 89 v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 89 VDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp EEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred hheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 999988754 11 246899999999999998875
No 123
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=2.4e-11 Score=100.69 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=79.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+..+|||+|||+|..+..+++..+ ..+++++|+++++++.|+++... .+++++.+|..+. + + .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~----------~ 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F----------P 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C----------C
Confidence 457999999999999999988775 57999999999999999987542 4688899987653 1 1 2
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.++||+|++... ..+....++++.+.|+|||.+++.+
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 578999988653 2345678999999999999987643
No 124
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.32 E-value=2.7e-11 Score=102.22 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhH---cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 6 DEAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 6 ~~~~~l~~l~~~---~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
.+.+-+..++.. .++.+|||||||+|..+..+++.. +.+|+++|+++++++.|+++.. +. .+++...|..+
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~ 224 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh
Confidence 344444444443 456799999999999999999765 4689999999999999999874 22 47788887643
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
. .++||.|+.-.. ..++..+++.+.+.|||||.+++..+.
T Consensus 225 l---------------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 225 L---------------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred c---------------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2 468999986543 234578899999999999999987654
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.32 E-value=2.9e-11 Score=99.08 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=79.0
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|..+..+++.++...+++++|+|+++++.+++.+......-++.++++|..+.++..... .
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~-------~ 135 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP-------A 135 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc-------c
Confidence 457999999999999999999876457899999999999999998876432245778899986644322100 0
Q ss_pred CCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 99 HGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 99 ~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.....+++.+.. ......+++.+.+.|+|||.++++
T Consensus 136 ~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 113334444433 233457899999999999998863
No 126
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.31 E-value=3.2e-12 Score=100.53 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCC-----ceEEEeCCchhHHHHHHhhhhccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
++|||+|||.|..+..||+. ++.|++||.++++++.|++......... ++++.+.+.+..
T Consensus 91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~------------ 155 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL------------ 155 (282)
T ss_pred ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc------------
Confidence 67999999999999999986 6899999999999999999843333222 355666665443
Q ss_pred ccCCCcccEEEEeCCCc---CcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 96 EKYHGTFDFVFVDADKD---NYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~---~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.++||.|++....+ +..++++.+.++|||||.+++..+..
T Consensus 156 ---~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 156 ---TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred ---ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 56799999876533 45788899999999999999977654
No 127
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.30 E-value=9.2e-11 Score=88.77 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHh-HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~-~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+...+.+...+.. .....++||+-+|+|..++..++.. ..+++.||.+.+.+...++|++..+...+++++..|+..
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 3445566666766 4888999999999999999977653 578999999999999999999999988899999999987
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCCCc--CcHHHHHHH----HhccCCCeEEEEeC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDADKD--NYVNYHKRL----IELVKVGGVIGYDN 135 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~~~--~~~~~~~~~----~~~L~~gG~lv~~d 135 (192)
.++.... .++||+||+|++.. ......... ...|+|+|++++..
T Consensus 105 ~L~~~~~---------~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 105 ALKQLGT---------REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHhcCC---------CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 7766521 23599999999843 221122222 26799999999853
No 128
>PTZ00146 fibrillarin; Provisional
Probab=99.30 E-value=8.2e-11 Score=95.10 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=76.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+|||+|||+|.++..++....+.++|+++|+++++.+...+..+. .+++.++.+|+..... .. .
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~-y~--------~ 198 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQK-YR--------M 198 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhh-hh--------c
Confidence 4557999999999999999999886678999999998765444443322 1578899999754211 11 0
Q ss_pred CCCcccEEEEeCCCcC-cHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~-~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+.+|+||+|....+ ...++.++.+.|||||.+++.
T Consensus 199 ~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 199 LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 1457999999986433 334556788899999999983
No 129
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=4.5e-11 Score=93.46 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=78.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..++||+|||+|..+..++.. +.+++++|+++++++.|++++...+...++++.++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------------
Confidence 45789999999999999999864 4689999999999999999998777666899999987543
Q ss_pred CCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++||+|+.... .......+..+.+.+++++++.+.
T Consensus 117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 357999986422 123345677787888888777764
No 130
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=4.5e-11 Score=93.75 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=88.9
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCC-----CcEEEEEeCCchhHHHHHHHHHHcCCCCc--eEEEeCCchhHHHHHHhhh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPD-----DGKILALDITKEHYEKGLPIIQKAGVAHK--IDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~ 91 (192)
+..++||++||+|-.+..+.++.+. .++|+.+|++|++++++++...+.++.+. +.++.+|++++ +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p------ 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P------ 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C------
Confidence 3468999999999999999998763 28999999999999999999877777544 89999999765 2
Q ss_pred hcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 92 SSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
+++.+||...+... ..+....++.+.+.|||||.+.|-+.
T Consensus 173 -----Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 173 -----FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred -----CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 34789999888765 56788999999999999998887443
No 131
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.30 E-value=3.3e-11 Score=89.00 Aligned_cols=105 Identities=26% Similarity=0.298 Sum_probs=77.0
Q ss_pred HHHHHHHHh-HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHH
Q 029536 8 AQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (192)
Q Consensus 8 ~~~l~~l~~-~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 86 (192)
.+++..+.. ..+..+|||+|||.|..+..++.. ..+++++|+++.+++. .++.....+.... ..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~-~~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP-PF 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH-HC
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh-hc
Confidence 455666664 567889999999999999999765 3599999999998876 1222222222111 11
Q ss_pred HHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
..++||+|++... ..+...+++.+.++|||||++++.....
T Consensus 75 -----------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 -----------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -----------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -----------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1789999998865 3356789999999999999999977653
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=6.5e-11 Score=95.62 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCC--cEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDD--GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
+..+|||+|||+|..+..++..++.. .+++++|+++.+++.|++.. +++.+..+|..+. + +
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~--------- 147 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F--------- 147 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C---------
Confidence 44689999999999999999876532 47999999999999987753 4688888887543 1 1
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.+++||+|+....+. .++.+.+.|+|||.+++.
T Consensus 148 -~~~sfD~I~~~~~~~----~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 148 -ADQSLDAIIRIYAPC----KAEELARVVKPGGIVITV 180 (272)
T ss_pred -cCCceeEEEEecCCC----CHHHHHhhccCCCEEEEE
Confidence 267899998654332 356778899999999864
No 133
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.28 E-value=1.1e-11 Score=95.58 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhHc-----CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 6 DEAQFFSMLLKLI-----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 6 ~~~~~l~~l~~~~-----~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
.+..||..+.... +..++||+|+|.|..|..++... -.+|..+|+.+++++.|++++... ...-.++++...
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gL 113 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-G
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCH
Confidence 4556777665543 45689999999999999877443 579999999999999999887541 123357777777
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE-eCccCCcc-ccCCCCCC
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY-DNTLWGGS-VVAPPDAD 149 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~-~d~~~~g~-~~~~~~~~ 149 (192)
+++.|. ..+||+|++.+. -.+..++|+++...|+|+|+|++ +|+...+. ..++.+.+
T Consensus 114 Q~f~P~------------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsS 177 (218)
T PF05891_consen 114 QDFTPE------------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSS 177 (218)
T ss_dssp GG----------------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTE
T ss_pred hhccCC------------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCe
Confidence 766543 579999999976 24567899999999999999999 45555554 56666654
No 134
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=95.31 Aligned_cols=119 Identities=16% Similarity=0.283 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHhH------cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe
Q 029536 4 SPDEAQFFSMLLKL------INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 4 ~~~~~~~l~~l~~~------~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
.||+.+++..++.. .++..+||+|||+|..++.+++.++ .+++++||.++.++..|.+|..++++..++.+++
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 36777888777653 3456899999999999999999998 8999999999999999999999999999988885
Q ss_pred CC----chhHHHHHHhhhhcccccCCCcccEEEEeCCC-----------------------------cCcHHHHHHHHhc
Q 029536 78 GP----ALPLLDQLIQDVSSTKEKYHGTFDFVFVDADK-----------------------------DNYVNYHKRLIEL 124 (192)
Q Consensus 78 ~d----~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~-----------------------------~~~~~~~~~~~~~ 124 (192)
-+ .....+. ..+++|+++.+++. ..+..++..+-++
T Consensus 206 ~~me~d~~~~~~l-----------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~ 274 (328)
T KOG2904|consen 206 NIMESDASDEHPL-----------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM 274 (328)
T ss_pred ccccccccccccc-----------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh
Confidence 53 3222221 26889999877540 1112344555689
Q ss_pred cCCCeEEEEe
Q 029536 125 VKVGGVIGYD 134 (192)
Q Consensus 125 L~~gG~lv~~ 134 (192)
|+|||.+.+.
T Consensus 275 Lq~gg~~~le 284 (328)
T KOG2904|consen 275 LQPGGFEQLE 284 (328)
T ss_pred cccCCeEEEE
Confidence 9999999875
No 135
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=3.5e-11 Score=93.90 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC--------------CCceEEEeCCchhHH
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL 84 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 84 (192)
++.+||++|||.|..+++||.. +..|+++|+|+.+++.+.+ +.++ ..+++++++|..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 5579999999999999999975 6789999999999997533 2221 246899999987653
Q ss_pred HHHHhhhhcccccCCCcccEEEEeC-----CCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
... .++||.|+-.. ++.....+++.+.++|+|||.+++.
T Consensus 108 ~~~-----------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 108 AAD-----------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccc-----------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 221 35688876432 2344567899999999999975554
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=1.1e-10 Score=91.35 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=87.1
Q ss_pred HHHHHHHHhH----cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 8 AQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 8 ~~~l~~l~~~----~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
.+++...+.. .++.+|||+|||+|..+..++.. ..+++++|+++.+++.+++++...+. .++++...|..+.
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~ 105 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDL 105 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHh
Confidence 3445544443 34789999999999999988875 35699999999999999998887665 2688888887655
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
... ..++||+|++... ..+...+++.+.+.|++||.+++...
T Consensus 106 ~~~-----------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 106 AEK-----------GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hcC-----------CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 321 1368999988643 44567888999999999999887643
No 137
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=1.3e-10 Score=91.12 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=74.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+|||+|||+|..+..++.. ..+++++|+++.+++.|++++...+..+++++..+|.. ..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~---------- 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL---------- 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc----------
Confidence 45679999999999999999875 35699999999999999999988877678999999832 11
Q ss_pred CCCcccEEEEeCCC-----cCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~-----~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|++.... ......++.+.+.+++++++.+
T Consensus 125 -~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 125 -LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred -cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 5689999875431 2334566666666665555544
No 138
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=8.5e-11 Score=91.48 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=72.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 95 (192)
.++.+|||+|||+|.++..+++..++.++|++||+++- .+. ++++++++|..+. ++++...
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~----- 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER----- 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-----
Confidence 45679999999999999999988765689999999981 122 4689999998653 3332211
Q ss_pred ccCCCcccEEEEeCCCc-------C-------cHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKD-------N-------YVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~ 134 (192)
...++||+|+.+..+. + ...+++.+.+.|+|||.+++.
T Consensus 113 -~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 113 -VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred -hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1256899999876311 0 135778889999999999985
No 139
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=2.1e-10 Score=85.86 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=81.0
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+.+|||+|||.|.....|+..-= .+.++++|.++++++.|+...++.++++.++|.+.|..+. .+ ..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~----------~~ 134 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF----------LS 134 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc----------cc
Confidence 34999999999999999987632 3569999999999999999888899988899999987543 22 25
Q ss_pred CcccEEE---------EeCC--CcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 100 GTFDFVF---------VDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 100 ~~~D~v~---------id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
++||+|. +.++ .....-++..+.++|+|||++++..+.|
T Consensus 135 ~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 135 GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 6777775 2222 1122345667778999999999987765
No 140
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.23 E-value=2.5e-10 Score=98.36 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=93.8
Q ss_pred HHHHHHHH--hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 8 AQFFSMLL--KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 8 ~~~l~~l~--~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
+.+...++ ...++.+|||++++.|+-|..+|..+...+.++++|+++..++..++++++.|+ .++.+...|+..+.+
T Consensus 100 S~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 100 SMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh
Confidence 34444444 445678999999999999999999887668999999999999999999999998 578899999876543
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCc-------C------------------cHHHHHHHHhccCCCeEEEEeCcc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKD-------N------------------YVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~-------~------------------~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.+ .+.||.|++|++-. + ..++++.+.++|||||+||+.-+.
T Consensus 179 ~~-----------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 179 AL-----------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred hc-----------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33 56799999997611 1 145778888999999999976543
No 141
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.22 E-value=1.2e-10 Score=100.94 Aligned_cols=106 Identities=22% Similarity=0.306 Sum_probs=80.2
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+..+|||+|||+|..+..+++. ..+++++|+++++++.+++. .+..++++++++|.......+
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~--------- 99 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI--------- 99 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC---------
Confidence 345679999999999999999976 45899999999999877652 223367899999885321111
Q ss_pred cCCCcccEEEEeCCC-----cCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 97 KYHGTFDFVFVDADK-----DNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 97 ~~~~~~D~v~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
..++||+|++.... .....+++.+.+.|+|||++++.+..+
T Consensus 100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 25789999987642 124678899999999999999876554
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=2.8e-10 Score=89.32 Aligned_cols=102 Identities=26% Similarity=0.393 Sum_probs=88.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
..+||||||.|.+...+|...| +..++|||+....+..+.+.+.+.++. |+.++++|+.++++.+. .++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~---------~~~ 118 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI---------PDG 118 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC---------CCC
Confidence 4789999999999999999987 789999999999999999999999985 99999999999998875 245
Q ss_pred cccEEEEeC---C--Cc------CcHHHHHHHHhccCCCeEEEE
Q 029536 101 TFDFVFVDA---D--KD------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 101 ~~D~v~id~---~--~~------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+.|-|++.. + +. -+..+++.+.+.|+|||.|.+
T Consensus 119 sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 119 SLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 888887754 3 12 246899999999999999986
No 143
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=9.7e-11 Score=91.71 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=73.5
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC--------------CCceEEEeCCchhHH
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------AHKIDFREGPALPLL 84 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~ 84 (192)
+..+||++|||.|..+++||.. +.+|++||+++.+++.+.+ +.++ ..++++.++|..++.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 4569999999999999999975 6789999999999987642 2222 257899999987663
Q ss_pred HHHHhhhhcccccCCCcccEEEEe-----CCCcCcHHHHHHHHhccCCCeEEE
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id-----~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
+.. .+.||+|+-. .+++....+++.+.++|+|||+++
T Consensus 111 ~~~-----------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AAD-----------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccc-----------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 221 3578988732 234556788999999999998543
No 144
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=2.3e-10 Score=106.27 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhHc----CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC-----------
Q 029536 5 PDEAQFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----------- 69 (192)
Q Consensus 5 ~~~~~~l~~l~~~~----~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------- 69 (192)
+++..++..|.... ++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++|++.+++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 56777777743321 246899999999999999998876 67999999999999999999987643
Q ss_pred ----CCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 70 ----AHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 70 ----~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.++++++++|..+..... ..+||+|+.+++
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~-----------~~~fDlIVSNPP 212 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDN-----------NIELDRIVGCIP 212 (1082)
T ss_pred cccccccEEEEECchhhhcccc-----------CCceEEEEECCC
Confidence 247999999986654211 247999998765
No 145
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.20 E-value=6.7e-10 Score=93.24 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=86.5
Q ss_pred CCCHHHHHHHH-HHHhHcC--CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC
Q 029536 2 MTSPDEAQFFS-MLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (192)
Q Consensus 2 ~~~~~~~~~l~-~l~~~~~--~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 78 (192)
|+++.+.+-|. .+....+ +.++||++||+|..++.+++.. .+|+++|.++.+++.+++|+...++ ++++++.+
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~ 261 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRM 261 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEC
Confidence 44555444444 4443333 3579999999999999888763 5899999999999999999999888 48999999
Q ss_pred CchhHHHHHHhhhh----cccccCCCcccEEEEeCCCcC-cHHHHHHHHhccCCCeEEEE
Q 029536 79 PALPLLDQLIQDVS----STKEKYHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 79 d~~~~~~~~~~~~~----~~~~~~~~~~D~v~id~~~~~-~~~~~~~~~~~L~~gG~lv~ 133 (192)
|+.++++.+...-. .+.+....+||+||+|++... ....++.+.+ +++++.+
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYI 318 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEE
Confidence 99888765421100 000000125899999999544 4455555544 6776664
No 146
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.20 E-value=5.4e-10 Score=94.22 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=84.3
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++..++ ++++++++|+..++.. ..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~~l~~------------~~ 124 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANALLHE------------ER 124 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHHHHhh------------cC
Confidence 5899999999999999987754 46899999999999999999998888 4678999999776542 24
Q ss_pred cccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 101 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 101 ~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+||+|++|+. .....+++.++..+++||++.+.
T Consensus 125 ~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 125 KFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 6999999985 44577888888889999999885
No 147
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.19 E-value=2.7e-10 Score=76.71 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=77.6
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+++|+|||.|..+..++. . ...+++++|+++...+.+++..... ...+++++.+|..+... . ..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~----------~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-E----------ADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-c----------cCCc
Confidence 489999999999998887 2 3689999999999999888644332 33678999998876543 1 1568
Q ss_pred ccEEEEeCCC----cCcHHHHHHHHhccCCCeEEEEe
Q 029536 102 FDFVFVDADK----DNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 102 ~D~v~id~~~----~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
||+|+++... .....+++.+.+.+++||.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999998763 24577888899999999999865
No 148
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=2.9e-10 Score=85.48 Aligned_cols=112 Identities=14% Similarity=0.007 Sum_probs=82.8
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+..++||+|||+|..+..+++. ..+++++|+++.+++.+++++.. .++++++++|+.++..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~----------- 73 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL----------- 73 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc-----------
Confidence 345579999999999999999876 47899999999999999998854 2589999999876521
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhc--cCCCeEEEEeCccCCccccCCC
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIEL--VKVGGVIGYDNTLWGGSVVAPP 146 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~--L~~gG~lv~~d~~~~g~~~~~~ 146 (192)
...+||.|+.+.+.....+.+..+.+. +.++|++++..-........|.
T Consensus 74 -~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 74 -PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred -cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 134699999987754445666666543 4488888876554444444443
No 149
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.18 E-value=3.7e-10 Score=91.18 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=78.4
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
...++++|||||||.|+.+..|+... ...|+|+|+++......+-.-.-.+....+..+.. ..+.++.
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp~--------- 179 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLPN--------- 179 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhccc---------
Confidence 34578999999999999999998763 36899999999877654432222333333333322 2222322
Q ss_pred ccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 96 EKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 96 ~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
.+.||+||+-+. ..+..+.+..+...|++||.++++-...+|
T Consensus 180 ---~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 180 ---LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred ---cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 468999999876 566788999999999999999987665443
No 150
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.17 E-value=8.8e-11 Score=89.50 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=79.0
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceE-EEeCCchhHHHHHHhhhhcccccCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKID-FREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
-.+||+|||+|..-.+.- .. +..+||++|+++.+-+.+.+.+++... .++. |++++.++. ++++ +
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~-p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~----------d 143 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WK-PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA----------D 143 (252)
T ss_pred cceEEecccCCCCccccc-CC-CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc----------c
Confidence 368999999997544322 11 578999999999999999999988754 4565 888888654 4443 7
Q ss_pred CcccEEEEe---CCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 100 GTFDFVFVD---ADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 100 ~~~D~v~id---~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
+++|.|+.- +..++..+.++++.++|||||.+++-.
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 899999754 347778899999999999999998744
No 151
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.17 E-value=3.1e-10 Score=86.78 Aligned_cols=105 Identities=15% Similarity=0.183 Sum_probs=73.8
Q ss_pred HHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHh
Q 029536 12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQ 89 (192)
Q Consensus 12 ~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 89 (192)
+.+....+..+|||+|||+|..+..++....+.++++++|+++.+ .. ++++++.+|..+. ++.+..
T Consensus 25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHH
Confidence 334444667899999999999999998876546799999999854 12 4678888876432 222211
Q ss_pred hhhcccccCCCcccEEEEeCCC-------cC-------cHHHHHHHHhccCCCeEEEEe
Q 029536 90 DVSSTKEKYHGTFDFVFVDADK-------DN-------YVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~-------~~-------~~~~~~~~~~~L~~gG~lv~~ 134 (192)
. ...++||+|++++.. .+ ....++.+.+.|+|||.+++.
T Consensus 93 ~------~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 R------VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred H------hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 0 014579999987531 11 246788899999999999874
No 152
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=1.5e-10 Score=93.19 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=74.1
Q ss_pred CCCEEEEEccchhHH----HHHHHHhCCC----CcEEEEEeCCchhHHHHHHHHHH----cC------------------
Q 029536 19 NAKNTMEIGVFTGYS----LLATALAIPD----DGKILALDITKEHYEKGLPIIQK----AG------------------ 68 (192)
Q Consensus 19 ~~~~ileiG~g~G~~----~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~~----~~------------------ 68 (192)
++.+|+++|||+|.- +..+++..+. +.+|+++|+|+.+++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 456999999999974 3334444432 47899999999999999974310 01
Q ss_pred ----CCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 69 ----VAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 69 ----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
+..+++|.+.|..+... ..++||+|++... ......+++.+.+.|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~------------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP------------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC------------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12367888888765321 1578999998533 2334578999999999999999743
No 153
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.14 E-value=1.4e-09 Score=91.46 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=87.6
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
.++||..||+|..++.++...+...+|+++|+++++++.+++|++..+. .+++++++|+..++... ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~-----------~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYR-----------NR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHh-----------CC
Confidence 4899999999999999998754347899999999999999999998877 37899999998887653 46
Q ss_pred cccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 101 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 101 ~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
+||+|++|+ ......+++.+.+.+++||+|.+.-
T Consensus 114 ~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 114 KFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 799999999 4555689999999999999998863
No 154
>PRK05785 hypothetical protein; Provisional
Probab=99.14 E-value=6.7e-10 Score=87.45 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHHhH-cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 10 FFSMLLKL-INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 10 ~l~~l~~~-~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
++..+... .++.+|||+|||+|..+..++... +.+++++|+++++++.|++. ..++++|+... +
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p--- 105 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P--- 105 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C---
Confidence 34444332 347899999999999999998765 46899999999999998863 13456776543 2
Q ss_pred hhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCe
Q 029536 89 QDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGG 129 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG 129 (192)
+.+++||+|++... ..+....++.+.+.|||..
T Consensus 106 --------~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 --------FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred --------CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 23789999998654 3456778999999999954
No 155
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.14 E-value=4.3e-10 Score=86.72 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=77.8
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+...|+|+.||.|..++.+|+..+ ..+|+++|++|.+++..+++++..++..++..+++|+.++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----------- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----------- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-----------
Confidence 34578999999999999999998644 688999999999999999999999999999999999988765
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|-|+++.+.. ..++++.+..++++||++.+
T Consensus 167 --~~~~drvim~lp~~-~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 --EGKFDRVIMNLPES-SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp --TT-EEEEEE--TSS-GGGGHHHHHHHEEEEEEEEE
T ss_pred --ccccCEEEECChHH-HHHHHHHHHHHhcCCcEEEC
Confidence 46899999977543 34788889999999999863
No 156
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.13 E-value=2.4e-09 Score=89.63 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=85.7
Q ss_pred CCCHHHHHHHH-HHHhHcC--CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC
Q 029536 2 MTSPDEAQFFS-MLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (192)
Q Consensus 2 ~~~~~~~~~l~-~l~~~~~--~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 78 (192)
|.++.+.+.|. .+....+ +.++||+|||+|..++.+++.. .+|+++|+++++++.|++|+...++ .+++++.+
T Consensus 177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~ 252 (353)
T TIGR02143 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRM 252 (353)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEc
Confidence 44555544444 4444333 4579999999999999988774 4899999999999999999999888 47999999
Q ss_pred CchhHHHHHHhh--h--hcccccCCCcccEEEEeCCCcC-cHHHHHHHHhccCCCeEEEE
Q 029536 79 PALPLLDQLIQD--V--SSTKEKYHGTFDFVFVDADKDN-YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 79 d~~~~~~~~~~~--~--~~~~~~~~~~~D~v~id~~~~~-~~~~~~~~~~~L~~gG~lv~ 133 (192)
|..++++..... . ....+.....||+||+|++... ....++.+.+ +++++.+
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYI 309 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEE
Confidence 998877542100 0 0000000124899999999554 4555565544 6777765
No 157
>PRK06202 hypothetical protein; Provisional
Probab=99.12 E-value=2.7e-10 Score=89.88 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=72.5
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCC---CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIP---DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
..++.+|||+|||+|..+..++...+ .+.+++++|+++++++.|++..... ++++...+.... +.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------- 125 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------- 125 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc-------
Confidence 34667999999999999998886532 2469999999999999998875432 455555544322 11
Q ss_pred ccccCCCcccEEEEeCCCcC-----cHHHHHHHHhccCCCeEEEEeCccC
Q 029536 94 TKEKYHGTFDFVFVDADKDN-----YVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.+++||+|++.....+ ...+++.+.+.++ |.+++.+...
T Consensus 126 ----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 126 ----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 1578999998754221 2457888888887 5666666543
No 158
>PHA03412 putative methyltransferase; Provisional
Probab=99.11 E-value=2.1e-09 Score=84.38 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=77.5
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCC--CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
.....+|||+|||+|..++.+++..+ +..+++++|+++.+++.|++++ .++.++.+|..... +
T Consensus 47 ~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~--~------- 111 (241)
T PHA03412 47 ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTE--F------- 111 (241)
T ss_pred ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhccc--c-------
Confidence 33467999999999999999987643 2579999999999999999875 35788888875431 1
Q ss_pred cccCCCcccEEEEeCCC-----cC----------cHHHHHHHHhccCCCeEEEEeCccC
Q 029536 95 KEKYHGTFDFVFVDADK-----DN----------YVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.++||+|+.+++. .+ ...+++.+.+++++|+.|+-...+.
T Consensus 112 ----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~ 166 (241)
T PHA03412 112 ----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSAN 166 (241)
T ss_pred ----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccccc
Confidence 4589999998761 11 2346777788888888866555543
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.10 E-value=1.5e-09 Score=82.04 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=72.4
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC--CCCceEEEeCCchhHH-HHHHhhhh
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREGPALPLL-DQLIQDVS 92 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~ 92 (192)
...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++..+ ...++++...|..+.. +...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---- 115 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---- 115 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence 356788999999999999999988743 68999999998 9999999999876 5578888888765432 2221
Q ss_pred cccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 93 STKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
...+||+|+..-. ...+..+++.+..+|+++|.+++..
T Consensus 116 -----~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 116 -----EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -----S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred -----ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1468999986432 5567788888999999998766543
No 160
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=4.3e-10 Score=87.61 Aligned_cols=110 Identities=19% Similarity=0.345 Sum_probs=79.6
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC---------------------------
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--------------------------- 69 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------------------- 69 (192)
...++.+|||||.+|..|+.+|+.+. ...+.|+||++..++.|+++++..--
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 45678999999999999999999986 56799999999999999998763210
Q ss_pred -------CCceEEEe----CCchhHHHHHHhhhhcccccCCCcccEEEEeCC---------CcCcHHHHHHHHhccCCCe
Q 029536 70 -------AHKIDFRE----GPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD---------KDNYVNYHKRLIELVKVGG 129 (192)
Q Consensus 70 -------~~~v~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~---------~~~~~~~~~~~~~~L~~gG 129 (192)
+.++.|.. .+..+++.. ....||+|++-+- .+....+|..+.++|.|||
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~-----------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM-----------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh-----------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 01111111 112233321 1568999986532 3456889999999999999
Q ss_pred EEEEeCccC
Q 029536 130 VIGYDNTLW 138 (192)
Q Consensus 130 ~lv~~d~~~ 138 (192)
++|+.---|
T Consensus 204 iLvvEPQpW 212 (288)
T KOG2899|consen 204 ILVVEPQPW 212 (288)
T ss_pred EEEEcCCch
Confidence 999865544
No 161
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.08 E-value=3.9e-10 Score=83.99 Aligned_cols=78 Identities=27% Similarity=0.354 Sum_probs=59.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
+.|+|+.||.|+.++.+|+.. .+|++||++|..++.|+.|.+..|+.++++++++|..+.++.+.. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---------~~ 68 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---------NK 68 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------------
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---------cc
Confidence 368999999999999999984 579999999999999999999999999999999999887665421 11
Q ss_pred cccEEEEeCC
Q 029536 101 TFDFVFVDAD 110 (192)
Q Consensus 101 ~~D~v~id~~ 110 (192)
.+|+||++++
T Consensus 69 ~~D~vFlSPP 78 (163)
T PF09445_consen 69 IFDVVFLSPP 78 (163)
T ss_dssp --SEEEE---
T ss_pred cccEEEECCC
Confidence 2899999976
No 162
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.4e-09 Score=79.35 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 4 SPDEAQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 4 ~~~~~~~l~~l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
.+..+..+-..+. ..+.+.|+|+|||+|..++..+... ..+|+++|+++++++.+++|..+ +..+++|+..|.
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv 102 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADV 102 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcch
Confidence 3444455555543 3456789999999999988766543 47999999999999999999998 446899999998
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhc
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIEL 124 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~ 124 (192)
.++ ..++|.++++++ +..-..++..+++.
T Consensus 103 ~~~---------------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 103 SDF---------------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred hhc---------------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence 776 678999999987 22234566666554
No 163
>PHA03411 putative methyltransferase; Provisional
Probab=99.07 E-value=2.5e-09 Score=85.79 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=72.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
...+|||+|||+|..++.++...+ ..+++++|+++.+++.+++++ ++++++++|..++..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~------------- 123 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES------------- 123 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-------------
Confidence 457999999999999998887654 479999999999999998864 368899999876531
Q ss_pred CCcccEEEEeCCCc-----------Cc------------HHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKD-----------NY------------VNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~-----------~~------------~~~~~~~~~~L~~gG~lv~ 133 (192)
..+||+|+++++.. .+ .+++.....+|+|+|.+.+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 46899999987611 11 2344555678899986654
No 164
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=3e-09 Score=87.56 Aligned_cols=96 Identities=17% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC----CCceEEEeCCchhHHHHHHhhhhcc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV----AHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
++.+|||+|||+|..++.+++. +.+|+++|+++.+++.++++.+..+. ..++++...|..+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----------
Confidence 5679999999999999999975 56899999999999999999876532 13678888876432
Q ss_pred cccCCCcccEEEEeCCCcC-----cHHHHHHHHhccCCCeEEEE
Q 029536 95 KEKYHGTFDFVFVDADKDN-----YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~-----~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++||+|++-....+ ....++.+. .+.+|++++.
T Consensus 210 ----~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 210 ----SGKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred ----CCCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 468999986433111 223444444 4567777663
No 165
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.05 E-value=2.8e-09 Score=78.72 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+++-.++.|...+.-.++..|||+|.|+|..|..+++..-+...++++|.+++++....+.+ +.+++++||+.+
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~ 105 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFD 105 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhh
Confidence 34445555555556667789999999999999998877655789999999999998777754 467799999977
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.-..+... ....||.|+..-+ .....++++.+...|..||.++-
T Consensus 106 l~~~l~e~-------~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 106 LRTTLGEH-------KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred HHHHHhhc-------CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 54344322 3678999987655 33457899999999999998873
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=84.96 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=82.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC-CCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..+|||.++|-|+.++..++.. ..+|+.+|.+|..++.|+-|-=..++ +..++++.||+.++.+.+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC--------
Confidence 457899999999999999877652 34999999999999888765322222 2468999999999988774
Q ss_pred cCCCcccEEEEeCCC------cCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDADK------DNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~~~------~~~~~~~~~~~~~L~~gG~lv 132 (192)
+.+||+|+-|++. -...++++++.+.|++||.++
T Consensus 203 --D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 203 --DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred --ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 7799999999872 123578899999999999885
No 167
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.1e-09 Score=85.10 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=90.9
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
.++-+++...++..|+|-|+|+|..+.+++++..+.++++..|......++|++.++++++.+++++.+.|....--..
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~- 173 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI- 173 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-
Confidence 4555666778889999999999999999999998899999999999999999999999999999999999876431111
Q ss_pred hhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCe-EEE
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGG-VIG 132 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG-~lv 132 (192)
....+|.||+|-+.. ++.+..+.+.||.+| .++
T Consensus 174 ---------ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 174 ---------KSLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ---------cccccceEEEcCCCh--hhhhhhhHHHhhhcCceEE
Confidence 157899999997633 555666666778777 444
No 168
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.1e-09 Score=88.59 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHh----HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe
Q 029536 2 MTSPDEAQFFSMLLK----LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 2 ~~~~~~~~~l~~l~~----~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
|.++...+-|...+. ..+.++++|+-||.|..++.+|.. ..+|+++|+++++++.|++|++.+++. +++|..
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 455666666655443 335579999999999999999954 578999999999999999999999995 599999
Q ss_pred CCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcH-HHHHHHHhccCCCeEEEE
Q 029536 78 GPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~-~~~~~~~~~L~~gG~lv~ 133 (192)
+++.++.+... ....+|.|++|++..... ++++.+ ..++|..++.+
T Consensus 348 ~~ae~~~~~~~---------~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYV 394 (432)
T COG2265 348 GDAEEFTPAWW---------EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYV 394 (432)
T ss_pred CCHHHHhhhcc---------ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEE
Confidence 99999877652 146899999999976665 555544 56777777765
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.01 E-value=3.1e-09 Score=87.45 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHc-CCCCceEEEe-CCchhHHHHHHhhhhcccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFRE-GPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~ 96 (192)
+..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.. ++..+++++. .+....+..+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~------- 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH------- 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc-------
Confidence 347899999999998888887665 689999999999999999999999 7888999875 344443332211
Q ss_pred cCCCcccEEEEeCC
Q 029536 97 KYHGTFDFVFVDAD 110 (192)
Q Consensus 97 ~~~~~~D~v~id~~ 110 (192)
..++||+|+++++
T Consensus 186 -~~~~fDlivcNPP 198 (321)
T PRK11727 186 -KNERFDATLCNPP 198 (321)
T ss_pred -cCCceEEEEeCCC
Confidence 1568999999987
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.99 E-value=6.1e-09 Score=79.14 Aligned_cols=120 Identities=22% Similarity=0.186 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCc--------EEEEEeCCchhHHHHHHHHHHcCCCCceE
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDG--------KILALDITKEHYEKGLPIIQKAGVAHKID 74 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 74 (192)
+.+..+..|-.++...+...+||--||+|...+..+....... ++++.|+++++++.|++|++.+++...+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 5667777888888877888999999999999988776544222 39999999999999999999999988999
Q ss_pred EEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCC-----------cCcHHHHHHHHhccCCCeEEEEe
Q 029536 75 FREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADK-----------DNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+...|+.++- + ..+++|.|+.|.+. .-|..+++.+.+.+++..++++.
T Consensus 92 ~~~~D~~~l~--~----------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELP--L----------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEE--GGGGG--G----------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEecchhhcc--c----------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999987663 1 16799999999872 22455667777889996666654
No 171
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1e-08 Score=85.78 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
.+...+...++...++.+|||+.++.|+=|..+|..+.. +..|+++|.++..++..++++++.|+. ++.+.+.|+..+
T Consensus 142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~ 220 (355)
T COG0144 142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRL 220 (355)
T ss_pred CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccc
Confidence 345556666677777899999999999999999998864 355699999999999999999999995 588888887654
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCC----------c---------------CcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADK----------D---------------NYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~----------~---------------~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..... ..++||.|++|++- + -..++++.++++|||||.|++.-+.
T Consensus 221 ~~~~~---------~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 221 AELLP---------GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ccccc---------ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 33321 13369999999760 0 0145778888999999999976553
No 172
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.97 E-value=1.7e-08 Score=82.02 Aligned_cols=120 Identities=21% Similarity=0.255 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
....+...++...+...|||++++.|+=|..++..+...+.+++.|+++..+...++++++.|. .++.....|+....+
T Consensus 72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHH
T ss_pred cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccc
Confidence 3444555556666778999999999999999999987679999999999999999999999998 578888788877655
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCC-------cC------------------cHHHHHHHHhcc----CCCeEEEEeCc
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADK-------DN------------------YVNYHKRLIELV----KVGGVIGYDNT 136 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~-------~~------------------~~~~~~~~~~~L----~~gG~lv~~d~ 136 (192)
... ...||.|++|++- .+ ..+.++.+.+.+ +|||.+++.-+
T Consensus 151 ~~~----------~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 151 KKP----------ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHH----------TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ccc----------ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 542 4469999999760 00 135777888999 99999997543
No 173
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.95 E-value=8.8e-09 Score=84.67 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-Cc
Q 029536 2 MTSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PA 80 (192)
Q Consensus 2 ~~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~ 80 (192)
+++|..++++-+|++..++..+||=-||||......... +++++|+|++.++++-|+.|++..++.+ ..+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence 578999999999999999999999999999998886643 6899999999999999999999998754 444444 77
Q ss_pred hhHHHHHHhhhhcccccCCCcccEEEEeCCC--------c----CcHHHHHHHHhccCCCeEEEEe
Q 029536 81 LPLLDQLIQDVSSTKEKYHGTFDFVFVDADK--------D----NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~--------~----~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
... + +. ..++|.|..|++. . -|.++++.+.+.|++||++++-
T Consensus 256 ~~l-p-l~----------~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 256 TNL-P-LR----------DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred ccC-C-CC----------CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 543 2 31 4479999999871 1 1667888899999999988863
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.95 E-value=1.2e-09 Score=84.71 Aligned_cols=108 Identities=15% Similarity=0.249 Sum_probs=75.3
Q ss_pred HHHHHHHHhHcC---CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 8 AQFFSMLLKLIN---AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 8 ~~~l~~l~~~~~---~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
-.+|..++...+ -+++||+|||+|..+-.+-.. ..+++++|+|+.++++|.+. +. .=++.+.+...++
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl 181 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFL 181 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHh
Confidence 345555555443 369999999999988877654 35799999999999998862 11 2234556665565
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+.. ..++||+|..--. ......+|-.+..+|+|||.+.|.
T Consensus 182 ~~~----------~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 182 EDL----------TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred hhc----------cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 543 3679999865221 334556777778999999999883
No 175
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=1.9e-09 Score=84.02 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=76.6
Q ss_pred CEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
.+|||||||.|.+...+.+..+. +-+++++|.+|.+++..+++..... .++.-...|...- .+ ..+...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~------~~~~~~ 142 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SL------KEPPEE 142 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hc------cCCCCc
Confidence 37999999999999999988761 2799999999999999888654322 3444444443211 11 113347
Q ss_pred CcccEEEEe----C-CCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 100 GTFDFVFVD----A-DKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 100 ~~~D~v~id----~-~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+++|+|.+- + .++.....++++.++|||||.|++-|.-
T Consensus 143 ~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 143 GSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred CccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 788876432 2 2566788999999999999999997764
No 176
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=1.7e-08 Score=82.44 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=66.1
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
+...+..+|||||||+|..|..++.. ..+++++|+++++++.+++++...+..++++++++|+.+..
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---------- 98 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---------- 98 (294)
T ss_pred cCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc----------
Confidence 34455679999999999999999875 46799999999999999999988776678999999986641
Q ss_pred cccCCCcccEEEEeCCC
Q 029536 95 KEKYHGTFDFVFVDADK 111 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~ 111 (192)
...||.|+.+.+.
T Consensus 99 ----~~~~d~VvaNlPY 111 (294)
T PTZ00338 99 ----FPYFDVCVANVPY 111 (294)
T ss_pred ----ccccCEEEecCCc
Confidence 3468999887764
No 177
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.93 E-value=7.4e-09 Score=78.64 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=71.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+|||+|||.|....+|.+. ++.+.+|+|++++.+..+.+ ..+.++++|..+-++.+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~--------- 72 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP--------- 72 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC---------
Confidence 34579999999999999888875 37899999999988765554 357799999998887764
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCC--eEEEEeCc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG--GVIGYDNT 136 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g--G~lv~~d~ 136 (192)
+++||.|++.-.-+....--..+.++|+-| +++.+-|.
T Consensus 73 -d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 73 -DQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred -CCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 789999998654222222222233445555 56666666
No 178
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.91 E-value=4.1e-09 Score=81.09 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=75.1
Q ss_pred HHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhh
Q 029536 13 MLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 13 ~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
......++..|+|.-||.|+.+..+|... ..|++||++|..+..|+.|++-.|++++++|++||..++...+...
T Consensus 88 ~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~-- 162 (263)
T KOG2730|consen 88 RVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD-- 162 (263)
T ss_pred HHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh--
Confidence 34445588899999999999999999764 4699999999999999999999999999999999999988877644
Q ss_pred cccccCCCcccEEEEeCC
Q 029536 93 STKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~ 110 (192)
...+|+||..++
T Consensus 163 ------K~~~~~vf~spp 174 (263)
T KOG2730|consen 163 ------KIKYDCVFLSPP 174 (263)
T ss_pred ------hheeeeeecCCC
Confidence 556889998876
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.90 E-value=3.2e-08 Score=86.53 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=84.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+...+||||||.|.++..+|...| +..++|+|+....+.++.+.....++ .|+.++.+|+..+...++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~---------- 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLP---------- 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcC----------
Confidence 356899999999999999999987 78999999999999888888888887 689999888765555443
Q ss_pred CCcccEEEEeCC-----Cc------CcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDAD-----KD------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~-----~~------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
++++|-|++..+ +. ...++++.+.+.|+|||.|.+
T Consensus 415 ~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 578999987643 11 236789999999999998875
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.5e-08 Score=74.71 Aligned_cols=102 Identities=22% Similarity=0.174 Sum_probs=78.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
..++.++|||||+|+.+.++++.+.++..+.++|++|++.+...+..+.++. +++.+..|...-+.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~------------ 107 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR------------ 107 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc------------
Confidence 4488999999999999999999987789999999999999998888877665 47778887655443
Q ss_pred CCCcccEEEEeCCC------c------------------CcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDADK------D------------------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~~------~------------------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.++.|+++++++. + ....++.++-.+|.|.|++.+.
T Consensus 108 -~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 108 -NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred -cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 5789999887651 0 0123445555788899988754
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.88 E-value=6.4e-09 Score=82.44 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=78.8
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+.++++|||+|.|..+..+++..| +.+++..|. |+.++.+++ .++++++.+|..+. +
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~--------- 156 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---L--------- 156 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---C---------
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhh---h---------
Confidence 34567999999999999999999998 889999999 888888887 57999999998632 2
Q ss_pred cCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCC--eEEEEeCccCC
Q 029536 97 KYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVG--GVIGYDNTLWG 139 (192)
Q Consensus 97 ~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~g--G~lv~~d~~~~ 139 (192)
+. +|++++..- .+....+++++.+.|+|| |.|++.+.+.+
T Consensus 157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred --cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 34 999998654 334567899999999999 98888877654
No 182
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=8.2e-09 Score=79.25 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.+|||+|||+|..+..++... ...++++|+++++++.+++ .+++++.+|..+.++.+ .
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~----------~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF----------P 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc----------C
Confidence 56799999999999999887653 4578999999999887764 24678888875533222 1
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCC
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKV 127 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~ 127 (192)
+++||+|++... ..+...+++.+.+.+++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 568999998754 23445566666655543
No 183
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.87 E-value=2.2e-08 Score=76.30 Aligned_cols=96 Identities=20% Similarity=0.281 Sum_probs=80.7
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+++|||+|.|.-++.+|-..| +.+++.+|...+.....+......++ ++++++++.+++ .. ...+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~--~~-----------~~~~ 115 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE--PE-----------YRES 115 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH--TT-----------TTT-
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc--cc-----------cCCC
Confidence 799999999999999998887 88999999999999999999999999 589999999977 11 1689
Q ss_pred ccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 102 FDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 102 ~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
||+|+.-+.. ....+++.+.+++++||.+++
T Consensus 116 fd~v~aRAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 116 FDVVTARAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp EEEEEEESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred ccEEEeehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 9999998754 456788999999999998885
No 184
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=3e-08 Score=81.90 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=92.1
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
...+..|+|.-+|.|..++.+|.... .+|+++|++|.+++..++|++.+++...+..+++|+.++.+.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---------- 253 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---------- 253 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc----------
Confidence 34588999999999999999998743 349999999999999999999999988899999999888664
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
.+.+|-|++..+. ...+++..+...+++||+|.++.....
T Consensus 254 --~~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 254 --LGVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --cccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 2689999987654 346778889999999999998877643
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=3.1e-08 Score=77.73 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=82.2
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHH------H-----cCCCCceEEEeCCchhHHHHH
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ------K-----AGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~------~-----~~~~~~v~~~~~d~~~~~~~~ 87 (192)
++.+||..|||.|.-+.+||.. +.+|+++|+|+.+++.+.+... + .....+++++++|..++-...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 3479999999999999999976 6789999999999988754210 0 001247899999987752100
Q ss_pred HhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCC
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPD 147 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~ 147 (192)
. ..++||+|+--+. +....++.+.+.++|+|||.+++--.-++.....|+.
T Consensus 120 -~--------~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf 175 (226)
T PRK13256 120 -N--------NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPY 175 (226)
T ss_pred -c--------ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCC
Confidence 0 1368999864432 5557788999999999999777654444443344454
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-08 Score=76.16 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=84.6
Q ss_pred HHHHHHHHHh-HcCCCEEEEEccchhHHHHHHHHhCCCCcE-EEEEeCCchhHHHHHHHHHHcCC---------CCceEE
Q 029536 7 EAQFFSMLLK-LINAKNTMEIGVFTGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGV---------AHKIDF 75 (192)
Q Consensus 7 ~~~~l~~l~~-~~~~~~ileiG~g~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---------~~~v~~ 75 (192)
.+..|..|-. ..++.+.||+|+|+|+.+.+++..+...+. ..+||.-++.++.+++++++.-- ..++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 4556666654 445679999999999999999977654444 49999999999999999886541 156888
Q ss_pred EeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 76 REGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+.+|.....+. ..+||.|++.+.... ..+.+...|++||-+++
T Consensus 149 vvGDgr~g~~e------------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 149 VVGDGRKGYAE------------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLI 191 (237)
T ss_pred EeCCccccCCc------------cCCcceEEEccCccc---cHHHHHHhhccCCeEEE
Confidence 99998765443 679999999876432 33456678889987775
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=5.9e-08 Score=77.87 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
++...+.+...+...+..+|||||||+|..+..++.. ..+++++|+++.+++.+++++.. .++++++++|+.+.
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~ 87 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV 87 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC
Confidence 4444444555555556789999999999999999986 35899999999999999988754 35899999998654
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCC
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADK 111 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~ 111 (192)
. ...||.|+.+.+.
T Consensus 88 ~--------------~~~~d~Vv~NlPy 101 (258)
T PRK14896 88 D--------------LPEFNKVVSNLPY 101 (258)
T ss_pred C--------------chhceEEEEcCCc
Confidence 1 2357988887663
No 188
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=7.6e-09 Score=80.97 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHH-HHHcC----------CCCc
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI-IQKAG----------VAHK 72 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~----------~~~~ 72 (192)
+|.-.+++.. ....++.+||..|||.|.-..+||.. +.+|+++|+++.+++.+.+. -.... ...+
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3444444444 23455569999999999999999976 67999999999999887332 11000 1246
Q ss_pred eEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeC-----CCcCcHHHHHHHHhccCCCeEEEE
Q 029536 73 IDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 73 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~-----~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
++++++|..++-+.. .++||+|+=-+ ++....++.+.+.++|+|||.+++
T Consensus 99 i~~~~gDfF~l~~~~-----------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 99 ITIYCGDFFELPPED-----------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEEEES-TTTGGGSC-----------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred eEEEEcccccCChhh-----------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 899999987753321 35899986432 256778899999999999998433
No 189
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=5.7e-08 Score=77.91 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=116.5
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC--C-CCceEEEeCCchhHHHHHHhh
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG--V-AHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~ 90 (192)
+.++.+|+.+|-||.|-|...+..+++ +.-..+..+|++...++..++++...- . .+++.++-||...+++..+
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-- 192 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-- 192 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--
Confidence 456788999999999999999998887 546889999999999999999988653 3 2689999999999998774
Q ss_pred hhcccccCCCcccEEEEeCCCc-------CcHHHHHHHHhccCCCeEEEEe-CccCCccccCCCCCCchhhhhhHHHHHH
Q 029536 91 VSSTKEKYHGTFDFVFVDADKD-------NYVNYHKRLIELVKVGGVIGYD-NTLWGGSVVAPPDADLDEHFLYLRDFVQ 162 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~-d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 162 (192)
.++||+|+.|.+.. ....++..+.+.||++|+++.- +..| ....+.+..+
T Consensus 193 --------~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w--------------l~~~~i~e~r 250 (337)
T KOG1562|consen 193 --------ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW--------------LHLDYIKEGR 250 (337)
T ss_pred --------cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh--------------HHHHHHHHHH
Confidence 67999999997621 2246778889999999998852 2222 1123445667
Q ss_pred HHHHHhhcCCCeeEEEeecC----CeeEEEEE
Q 029536 163 ELNKALAVDPRIEICQISIA----DGVTLCRR 190 (192)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~----~G~~i~~k 190 (192)
.|...+.....+..+..|+- -|+.++-|
T Consensus 251 ~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~ 282 (337)
T KOG1562|consen 251 SFCYVIFDLTAYAITTVPTYPSGRIGFMLCSK 282 (337)
T ss_pred HhHHHhcCccceeeecCCCCccceEEEEEecc
Confidence 77777777777888888742 46666654
No 190
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=78.01 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=85.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHH--HHHHcC---C-CCceEEEeCCchhHHHHHHhhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP--IIQKAG---V-AHKIDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~--~~~~~~---~-~~~v~~~~~d~~~~~~~~~~~~ 91 (192)
...+++|-+|.|.|...+.+.+. |.-.+++-+|.+|++++.++. .+++.+ + +++++++..|+.++++..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 45679999999999999999876 646899999999999999994 344332 2 378999999999998875
Q ss_pred hcccccCCCcccEEEEeCC-Cc-------CcHHHHHHHHhccCCCeEEEEe
Q 029536 92 SSTKEKYHGTFDFVFVDAD-KD-------NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~-~~-------~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.+.||+|++|-. +. .-.+++..+.+.|+++|++++.
T Consensus 363 -------~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 363 -------ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred -------cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 569999999965 21 2257888999999999999974
No 191
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.77 E-value=6.2e-08 Score=78.92 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++..++|.+||.|+-+..+++.++++++|+++|.++++++.|++.+.. ..++++++++..++...+...
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~-------- 87 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG-------- 87 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC--------
Confidence 446899999999999999999987679999999999999999998765 468999999998876554210
Q ss_pred CCcccEEEEeCC
Q 029536 99 HGTFDFVFVDAD 110 (192)
Q Consensus 99 ~~~~D~v~id~~ 110 (192)
-.++|.|++|..
T Consensus 88 ~~~vDgIl~DLG 99 (296)
T PRK00050 88 LGKVDGILLDLG 99 (296)
T ss_pred CCccCEEEECCC
Confidence 137999999854
No 192
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.77 E-value=1.8e-07 Score=75.21 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=92.1
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhh
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
|....+|-+||||.||.|...+......+. ..++...|.++..++..++.+++.|+.+-++|.++|+.+... ++.
T Consensus 130 L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~--- 205 (311)
T PF12147_consen 130 LREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA--- 205 (311)
T ss_pred HHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc---
Confidence 334457889999999999998888877764 368999999999999999999999998778999999987522 211
Q ss_pred cccccCCCcccEEEEeCCCcC------cHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 93 STKEKYHGTFDFVFVDADKDN------YVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~~------~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
...+.+++++.+-.+- ....+..+...+.|||++|+.+-.|+
T Consensus 206 -----l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 206 -----LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred -----cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 1567899998876221 23457777899999999998876553
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.76 E-value=3.1e-08 Score=81.19 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=80.4
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
+..+.+.|||+|||+|-.+.+-|++. ..+|++||.+.- .+.|++.+..+++++.++++.+...+. .++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP------- 124 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDI--ELP------- 124 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEE--ecC-------
Confidence 45788999999999999999998875 579999999864 499999999999999999999998876 341
Q ss_pred ccCCCcccEEEEeCC--CcCcHHHHHHHH----hccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDAD--KDNYVNYHKRLI----ELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~--~~~~~~~~~~~~----~~L~~gG~lv~~ 134 (192)
.++.|+|+..+. ..-+...++.++ +.|+|||++.-+
T Consensus 125 ---~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 125 ---VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred ---ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 478999876543 111233333332 789999998643
No 194
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.75 E-value=1e-07 Score=77.09 Aligned_cols=93 Identities=16% Similarity=0.029 Sum_probs=67.3
Q ss_pred HHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh
Q 029536 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 90 (192)
+...+...++.+|||||||+|..+..++... .+++++|+++++++.+++++.. ++++++++|+.++. +.
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~--~~-- 102 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD--LS-- 102 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC--HH--
Confidence 3333344567899999999999999999874 3899999999999999987642 58999999987651 11
Q ss_pred hhcccccCCCcccEEEEeCCCcCcHHHHHHHH
Q 029536 91 VSSTKEKYHGTFDFVFVDADKDNYVNYHKRLI 122 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~ 122 (192)
.-.+|.|+.+.+..-...++..+.
T Consensus 103 --------~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 103 --------ELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred --------HcCcceEEEeCCccchHHHHHHHH
Confidence 111577777766443455555554
No 195
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=78.66 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=72.4
Q ss_pred HHHHHHHhHcCCC-EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHH
Q 029536 9 QFFSMLLKLINAK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 9 ~~l~~l~~~~~~~-~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 87 (192)
.++..++...+.. .++|+|||+|..++.++.+. .+|+++|+++.+++.|++.....-.....++-..+..+++.
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-- 96 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-- 96 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC--
Confidence 4566677666655 89999999998888888774 47999999999999888743211111111111111112211
Q ss_pred HhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCe-EEEE
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGY 133 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG-~lv~ 133 (192)
.+++.|+|.+--. .-+..++++.+.+.||+.| ++.+
T Consensus 97 ----------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 97 ----------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 1678999876322 3456789999999999887 6655
No 196
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.71 E-value=1.1e-07 Score=73.23 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=86.6
Q ss_pred HHHHHHHHHhHcC-CC-EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH-
Q 029536 7 EAQFFSMLLKLIN-AK-NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL- 83 (192)
Q Consensus 7 ~~~~l~~l~~~~~-~~-~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 83 (192)
..-++..|....+ .. +|||||||+|.-+.++|..+| .-+-...|+++......+.++...+++.-..-+.-|....
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP 89 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence 3445555555433 33 499999999999999999998 7788888999998888888888877642111222332211
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeC-----CCcCcHHHHHHHHhccCCCeEEEEeCcc-CCccccCCC
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIGYDNTL-WGGSVVAPP 146 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~d~~-~~g~~~~~~ 146 (192)
.+... ..+...++||.||.-- +......+|+.+.++|++||.+++=..+ ++|....+.
T Consensus 90 w~~~~-----~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S 153 (204)
T PF06080_consen 90 WPWEL-----PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES 153 (204)
T ss_pred Ccccc-----ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH
Confidence 11000 0001256899998642 2445577899999999999988874444 455544333
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.71 E-value=1.5e-07 Score=78.77 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHH-hHcC--CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC
Q 029536 2 MTSPDEAQFFSMLL-KLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (192)
Q Consensus 2 ~~~~~~~~~l~~l~-~~~~--~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 78 (192)
|+++.+.+-|...+ ...+ +..+||+.||+|..++.+|.. ..+|+|||.++++++.|++|++..++ ++++|+.+
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~ 251 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRG 251 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE-
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEe
Confidence 45555555555443 3322 348999999999999999976 46899999999999999999999998 68999999
Q ss_pred CchhHHHHHHhh--hhc--ccccCCCcccEEEEeCCCcCc-HHHHHHH
Q 029536 79 PALPLLDQLIQD--VSS--TKEKYHGTFDFVFVDADKDNY-VNYHKRL 121 (192)
Q Consensus 79 d~~~~~~~~~~~--~~~--~~~~~~~~~D~v~id~~~~~~-~~~~~~~ 121 (192)
++.++...+... ..- +-......+|+|++|++.... ...++.+
T Consensus 252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 887654332100 000 000012368999999995543 3444444
No 198
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.70 E-value=2.6e-07 Score=73.85 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=52.3
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
+...++.+|||||||+|..+..++... ..++++|+++.+++.+++++.. .++++++++|+.+.
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 344567899999999999999999875 3599999999999999987743 36899999998654
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=1e-07 Score=74.14 Aligned_cols=98 Identities=22% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+++++|||+|.|.-++.+|-..| +.+++.+|...+.+...++...+.++ ++++++++.++++-++. .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~-----------~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEK-----------K 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccccc-----------c
Confidence 68999999999999999997766 67799999999999999999999998 68999999998774422 1
Q ss_pred CcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 100 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 100 ~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
. ||+|.+-+.. ......+.+.+++++||.++
T Consensus 135 ~-~D~vtsRAva-~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 135 Q-YDVVTSRAVA-SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred c-CcEEEeehcc-chHHHHHHHHHhcccCCcch
Confidence 1 9999887643 34667888999999998875
No 200
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.68 E-value=1.4e-07 Score=75.96 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHH-HcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.|++|+=||+| .-.+++.+++....+..++++|+++++.+.+++.++ ..++..+++|+.+|..+....
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---------- 189 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---------- 189 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc----------
Confidence 35699999999 566777777654336789999999999999999888 567788999999998665322
Q ss_pred cCCCcccEEEEeCCCc----CcHHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDADKD----NYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~----~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
-..||+||+.+... ...++++++.+.++||..|++-
T Consensus 190 --l~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 190 --LKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ------SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred --cccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 35899999987644 7889999999999999999975
No 201
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.68 E-value=5.1e-08 Score=77.40 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHhH----cCCCEEEEEccchhHHHHHHHHhC---C-CCcEEEEEeCCc---------------------
Q 029536 4 SPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAI---P-DDGKILALDITK--------------------- 54 (192)
Q Consensus 4 ~~~~~~~l~~l~~~----~~~~~ileiG~g~G~~~~~la~~~---~-~~~~v~~vD~~~--------------------- 54 (192)
+...-.-|+.++.. .=|-.++|+||.-|.++..++..+ . .+-++++.|.-+
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 33444444444443 236689999999999887765432 2 234688888521
Q ss_pred -----hhHHHHHHHHHHcCC-CCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC-CcCcHHHHHHHHhccCC
Q 029536 55 -----EHYEKGLPIIQKAGV-AHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-KDNYVNYHKRLIELVKV 127 (192)
Q Consensus 55 -----~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-~~~~~~~~~~~~~~L~~ 127 (192)
-.++..++++.+.++ .++++++.|...+.++..+ ..++-++.+|++ .+.....++.+.+.|.|
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p----------~~~IAll~lD~DlYesT~~aLe~lyprl~~ 204 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP----------IERIALLHLDCDLYESTKDALEFLYPRLSP 204 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T----------T--EEEEEE---SHHHHHHHHHHHGGGEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC----------CccEEEEEEeccchHHHHHHHHHHHhhcCC
Confidence 134555666666665 4689999999988887653 568889999998 56678899999999999
Q ss_pred CeEEEEeCccC
Q 029536 128 GGVIGYDNTLW 138 (192)
Q Consensus 128 gG~lv~~d~~~ 138 (192)
||+|++||...
T Consensus 205 GGiIi~DDY~~ 215 (248)
T PF05711_consen 205 GGIIIFDDYGH 215 (248)
T ss_dssp EEEEEESSTTT
T ss_pred CeEEEEeCCCC
Confidence 99999999764
No 202
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.68 E-value=1.6e-07 Score=80.78 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCEEEEEccchhHHHHHHHHhC---CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 20 AKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+.|+++|||+|-.+...+++. ....+|++||.++.+....++.++..+..++|+++++|..++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----------
Confidence 4679999999999987776654 12469999999998887777777888998999999999987632
Q ss_pred cCCCcccEEEEeC-----CCcCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDA-----DKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~-----~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
+.+.|+|+.-. ..+-..+.+....+.|||||+++
T Consensus 256 --pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 --PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred --CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 56899997542 13445677777789999999997
No 203
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.64 E-value=1.1e-07 Score=78.81 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=73.6
Q ss_pred HHHHHHHhHc----CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcC---------CCCceEE
Q 029536 9 QFFSMLLKLI----NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAG---------VAHKIDF 75 (192)
Q Consensus 9 ~~l~~l~~~~----~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~v~~ 75 (192)
.|+...+... ++.+|||+|||-|+-..=+..+ . -..++|+|+++..++.|++..++.. ..-...+
T Consensus 48 ~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f 125 (331)
T PF03291_consen 48 VLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEF 125 (331)
T ss_dssp HHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEE
T ss_pred HHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhe
Confidence 3444444422 5689999999988744444443 2 5799999999999999999884321 1134678
Q ss_pred EeCCchhH-HHHHHhhhhcccccCCCcccEEEEeCC-------CcCcHHHHHHHHhccCCCeEEEE
Q 029536 76 REGPALPL-LDQLIQDVSSTKEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 76 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~D~v~id~~-------~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+.+|.... +.... .....+||+|-+... .+....+++++...|+|||+++.
T Consensus 126 ~~~D~f~~~l~~~~-------~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 126 IAADCFSESLREKL-------PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp EESTTCCSHHHCTS-------SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred eccccccchhhhhc-------cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 88886431 22111 111359999987654 23345689999999999999985
No 204
>PRK04148 hypothetical protein; Provisional
Probab=98.59 E-value=8.8e-07 Score=63.86 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=66.8
Q ss_pred HHHHHHHHHhHcCCCEEEEEccchhH-HHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 7 EAQFFSMLLKLINAKNTMEIGVFTGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 7 ~~~~l~~l~~~~~~~~ileiG~g~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
-+++|.......++++++|||||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 34455554444566889999999997 55566643 57999999999988877763 36788888765433
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccC
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVK 126 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~ 126 (192)
.+ -..+|+|+.--++......+-.+.+.+.
T Consensus 73 ~~-----------y~~a~liysirpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 73 EI-----------YKNAKLIYSIRPPRDLQPFILELAKKIN 102 (134)
T ss_pred HH-----------HhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 33 4678999876555545554555544443
No 205
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.58 E-value=8e-08 Score=74.20 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++.-|||||||+|.++..+... +...+++|+||.+++.|.+.--+ -.++.+|.-+-++ +.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glp-----------fr 109 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLP-----------FR 109 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCC-----------CC
Confidence 3678999999999999887754 57899999999999999872211 2355565433332 34
Q ss_pred CCcccEEEEeC--------CC------cCcHHHHHHHHhccCCCeEEEEe
Q 029536 99 HGTFDFVFVDA--------DK------DNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 99 ~~~~D~v~id~--------~~------~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
++.||-++.-+ ++ .....||..+...|++|+..++.
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 89999886432 21 12345788889999999988763
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3.7e-07 Score=66.17 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=63.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
..++.++|+|||+|..+. +...+....|+|+|++|++++.++.|.++..+ ++++++.|..+....
T Consensus 47 iEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~----------- 111 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK----------- 111 (185)
T ss_pred ccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-----------
Confidence 467899999999999874 33455578999999999999999999998776 568889888665332
Q ss_pred CCCcccEEEEeCC
Q 029536 98 YHGTFDFVFVDAD 110 (192)
Q Consensus 98 ~~~~~D~v~id~~ 110 (192)
.+.||.++++.+
T Consensus 112 -~g~fDtaviNpp 123 (185)
T KOG3420|consen 112 -GGIFDTAVINPP 123 (185)
T ss_pred -CCeEeeEEecCC
Confidence 689999999987
No 207
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.53 E-value=4e-07 Score=67.87 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred EEEeCCchhHHHHHHHHHHc--CCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHH
Q 029536 48 LALDITKEHYEKGLPIIQKA--GVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLI 122 (192)
Q Consensus 48 ~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~ 122 (192)
+++|+|+++++.|++..... +...+++++++|+.+. + + .+++||+|++... ..+....++.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~----------~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F----------DDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C----------CCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 48999999999998766532 2235799999998664 2 1 2678999988653 346788999999
Q ss_pred hccCCCeEEEEeCcc
Q 029536 123 ELVKVGGVIGYDNTL 137 (192)
Q Consensus 123 ~~L~~gG~lv~~d~~ 137 (192)
+.|||||.+++.+..
T Consensus 69 rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 69 RVLKPGSRVSILDFN 83 (160)
T ss_pred HHcCcCeEEEEEECC
Confidence 999999999887664
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.7e-06 Score=66.55 Aligned_cols=87 Identities=16% Similarity=0.062 Sum_probs=65.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH-HHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL-DQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~~ 96 (192)
.+..+|||||+|.|..|..|++. ..+|+++|+++..++..++.+. ..++++++++|+..+- +.+
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l--------- 93 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL--------- 93 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh---------
Confidence 34578999999999999999987 4679999999999998888765 3478999999997652 111
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHH
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLI 122 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~ 122 (192)
..++.|+.+-+..=...++..+.
T Consensus 94 ---~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 94 ---AQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred ---cCCCEEEEcCCCcccHHHHHHHH
Confidence 16788888877544444444443
No 209
>PRK10742 putative methyltransferase; Provisional
Probab=98.47 E-value=1.2e-06 Score=69.25 Aligned_cols=88 Identities=9% Similarity=0.097 Sum_probs=71.5
Q ss_pred HHHHHHHhHcCCC--EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHc------C--CCCceEEEeC
Q 029536 9 QFFSMLLKLINAK--NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA------G--VAHKIDFREG 78 (192)
Q Consensus 9 ~~l~~l~~~~~~~--~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~ 78 (192)
+.|...+...+.. +|||..+|.|..++.++.. +++|+++|.+|......++++... + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3444444445555 8999999999999999976 567999999999999999999875 2 2257999999
Q ss_pred CchhHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 79 PALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
|+.++++.. ...||+||+|+.
T Consensus 153 da~~~L~~~-----------~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI-----------TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC-----------CCCCcEEEECCC
Confidence 999998764 457999999987
No 210
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.42 E-value=5.2e-07 Score=71.06 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=58.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHH-HHHHHHHcCCCCceEE-EeCCchhH-HHHHHhhhhcc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEK-GLPIIQKAGVAHKIDF-REGPALPL-LDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~v~~-~~~d~~~~-~~~~~~~~~~~ 94 (192)
.+.+.+||+|||+|..+..++.. + ..+|+++|+++.++.. .+++ +++.. -..+.... .+.+.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~------ 138 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF------ 138 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC------
Confidence 35679999999999999999986 3 5789999999987754 2221 23221 11122110 11110
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
..-..+|++|+.. ...+..+.+.|++ |.+++
T Consensus 139 --~d~~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 139 --PDFATFDVSFISL-----ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred --CCceeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence 0124788888754 3357888889999 65543
No 211
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.41 E-value=2.1e-06 Score=66.58 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=67.3
Q ss_pred EEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcc
Q 029536 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTF 102 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
+.||||-.|+...+|+.... ..+++++|+++.-++.|++++...++.++++++.+|..+.++. .+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------------~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------------GEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------------GG--
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------------CCCC
Confidence 68999999999999998754 5789999999999999999999999999999999999877653 2336
Q ss_pred cEEEEeCC-CcCcHHHHHHHHhccCCCeEEE
Q 029536 103 DFVFVDAD-KDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 103 D~v~id~~-~~~~~~~~~~~~~~L~~gG~lv 132 (192)
|.|+|-+. -.-..++++.....++....++
T Consensus 68 d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 68 DTIVIAGMGGELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp -EEEEEEE-HHHHHHHHHHTGGGGTT--EEE
T ss_pred CEEEEecCCHHHHHHHHHhhHHHhccCCeEE
Confidence 88887653 2223445555444444443444
No 212
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.41 E-value=5.2e-06 Score=64.08 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=84.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.+||++|-|.|.....+-++-| .+.+.||..|+.+++.++.- ....++|.++.+..++.++.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~--------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP--------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc---------
Confidence 6788999999999998887776633 56778899999988766642 1223689999999999998885
Q ss_pred CCCcccEEEEeCCCcC---cHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDADKDN---YVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~---~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
++.||=|+.|...+. ...+++.+.++|||+|++-+-|-+
T Consensus 167 -d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 167 -DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred -ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 667999999987444 456778889999999999876654
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.40 E-value=2.4e-06 Score=67.98 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=66.1
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
+...++..|||||.|+|..|..|+.. +.+|+++|++|.++...++.+.....+.+.+++++|....
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~----------- 119 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT----------- 119 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-----------
Confidence 34556789999999999999999987 6789999999999999999888777778999999997654
Q ss_pred cccCCCcccEEEEeCC
Q 029536 95 KEKYHGTFDFVFVDAD 110 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~ 110 (192)
+...||.++.+.+
T Consensus 120 ---d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 120 ---DLPRFDGCVSNLP 132 (315)
T ss_pred ---CCcccceeeccCC
Confidence 1357899887655
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.39 E-value=3.4e-06 Score=69.09 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=77.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
++.+.|||+|||+|..+.+.+.+. ..+|++||-+ ++.+.|++.++...+.+++.++.|..++. ++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL---------- 240 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL---------- 240 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC----------
Confidence 467899999999999998877763 5799999986 58899999999999999999999988765 22
Q ss_pred CCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEE
Q 029536 98 YHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 98 ~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv 132 (192)
+++.|+|+..+- .+...+-+-.+++.|+|+|-+.
T Consensus 241 -PEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 241 -PEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -chhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 678899876543 1222333344568999999875
No 215
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.38 E-value=1.8e-06 Score=70.20 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=75.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCC-----ceEEEeCCchh-HHHHHHhhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-----KIDFREGPALP-LLDQLIQDV 91 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~-~~~~~~~~~ 91 (192)
.+.+.++++|||-|+-++-+-++. -+.++++|+..-.++.|++..+.+.-.. .+.|+.+|... .+..+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~--- 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL--- 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc---
Confidence 356789999999998776665442 4789999999999999998877654322 37899998753 233321
Q ss_pred hcccccCCCcccEEEEeCC-------CcCcHHHHHHHHhccCCCeEEE
Q 029536 92 SSTKEKYHGTFDFVFVDAD-------KDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~-------~~~~~~~~~~~~~~L~~gG~lv 132 (192)
.+.+.+||+|-+... ......++.++...|+|||++|
T Consensus 191 ----e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 191 ----EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred ----cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 112445999865432 2233457888999999999998
No 216
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.37 E-value=4.6e-06 Score=66.24 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=68.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+..++||||+|.|..|..++..+. +|+++|.|+.|... +++.| ++++..+ ++. . .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~r----L~~kg----~~vl~~~--~w~-~-----------~ 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWR----LSKKG----FTVLDID--DWQ-Q-----------T 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHH----HHhCC----CeEEehh--hhh-c-----------c
Confidence 567899999999999999998764 69999999988643 44433 3444332 221 1 1
Q ss_pred CCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 99 HGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 99 ~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+.+||+|.+--. .......++.+++.|+|+|.+++.=++
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 568999976432 345678899999999999999885554
No 217
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.37 E-value=3.5e-06 Score=70.69 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=85.1
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
-.+..+|||+.+..|+-|.++|..+...+.|++.|.+...+...++++.++|+. +....+.|..++-...
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~--------- 308 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKE--------- 308 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccc---------
Confidence 345679999999999999999998886799999999999999999999999984 5556677776542221
Q ss_pred cCCCcccEEEEeCCCcC-------------------------cHHHHHHHHhccCCCeEEEEeC
Q 029536 97 KYHGTFDFVFVDADKDN-------------------------YVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~d 135 (192)
..++||-|++|++-.. ..+.+..+.+++++||+||+.-
T Consensus 309 -~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 309 -FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred -cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1458999999976111 1346777889999999999653
No 218
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.37 E-value=5.6e-07 Score=69.32 Aligned_cols=104 Identities=25% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhCC--------CCcEEEEEeCCchhHHHHHHHH--------------HHc-----C---
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIP--------DDGKILALDITKEHYEKGLPII--------------QKA-----G--- 68 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~--------~~~~v~~vD~~~~~~~~a~~~~--------------~~~-----~--- 68 (192)
++-+|+..||++|.-+-.+|-.+. ...+++++|+|+.+++.|++-. ++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 466999999999985554443221 1359999999999999998421 110 0
Q ss_pred -----CCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 69 -----VAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 69 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+..+|+|...+..+..+ ..+.||+||+--. .......++.+...|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~------------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP------------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc------------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 01357777777655111 2679999998654 344577889999999999999974
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.35 E-value=2.4e-06 Score=70.23 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhC------CCCcEEEEEeCCchhHHHHHHHHHHcCCCCc-eEE
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI------PDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDF 75 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~ 75 (192)
++....+++..++...+..+|+|-.||+|.....+.+.+ ....+++|+|+++.....++-++.-.+.... ..+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 455667788888877777799999999999988877643 1267999999999999999988776665433 468
Q ss_pred EeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcC------------------------cHHHHHHHHhccCCCeEE
Q 029536 76 REGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDN------------------------YVNYHKRLIELVKVGGVI 131 (192)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~------------------------~~~~~~~~~~~L~~gG~l 131 (192)
..+|........ ...+||+|+.+++... ...++..+.+.|++||.+
T Consensus 110 ~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 110 IQGDSLENDKFI----------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp EES-TTTSHSCT----------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred cccccccccccc----------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 888875432110 1468999998876110 124778889999999964
Q ss_pred E
Q 029536 132 G 132 (192)
Q Consensus 132 v 132 (192)
+
T Consensus 180 ~ 180 (311)
T PF02384_consen 180 A 180 (311)
T ss_dssp E
T ss_pred e
Confidence 3
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.35 E-value=1.3e-06 Score=66.20 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHhhhhcccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDVSSTKE 96 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~ 96 (192)
++.++||+||++|+++..++....+.++|+++|+.+.. .. ..+.++.+|..+ ....+.... .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-~~~~~i~~d~~~~~~~~~i~~~~----~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-QNVSFIQGDITNPENIKDIRKLL----P 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSH----G
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-cceeeeecccchhhHHHhhhhhc----c
Confidence 34799999999999999999886446899999998761 11 455666665432 111221100 0
Q ss_pred cCCCcccEEEEeCC--------CcCc------HHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDAD--------KDNY------VNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~--------~~~~------~~~~~~~~~~L~~gG~lv~~ 134 (192)
....++|+|+.|.. .+.+ ...+..+.+.|++||.+++.
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 01368999999983 1111 23444556889999987763
No 221
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.33 E-value=6.3e-06 Score=62.48 Aligned_cols=126 Identities=21% Similarity=0.191 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhC---CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
|-.--.++.|+...+|..|+|+|+-.|+|++++|... ....+|+++|++-...+.+... .+++.|+.+++.
T Consensus 55 p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~ 128 (237)
T COG3510 55 PSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSST 128 (237)
T ss_pred HHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCC
Confidence 4445567889999999999999999999999988643 2236899999986654322221 378999999975
Q ss_pred hHH--HHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCeEEEEeCccCCccc
Q 029536 82 PLL--DQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTLWGGSV 142 (192)
Q Consensus 82 ~~~--~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~ 142 (192)
+.. .+.... ++ .-+-=+|+.|++ ..+....++.+.++|..|-++++.|...++..
T Consensus 129 dpai~eqi~~~-~~-----~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 129 DPAIAEQIRRL-KN-----EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CHHHHHHHHHH-hc-----CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 521 111111 11 112235567777 44567788888999999999999888877665
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.32 E-value=5.9e-06 Score=64.09 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=66.5
Q ss_pred HhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHH-------HcCC-CCceEEEeCCchhH--H
Q 029536 15 LKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-------KAGV-AHKIDFREGPALPL--L 84 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~~--~ 84 (192)
+...+....+|+|||.|...+..|...+ ..+.+|||+.+...+.|+...+ ..+. ..++++..+|..+. .
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3445567899999999999988876654 5679999999988877765332 3333 35788999987542 2
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
... -..-|+||++.. .+.....+......||+|..||....+
T Consensus 117 ~~~-----------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 117 KDI-----------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHH-----------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred hhh-----------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 222 135699999865 344455566777889999998864333
No 223
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.32 E-value=5.5e-06 Score=60.11 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=61.4
Q ss_pred EEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC------------CcC
Q 029536 46 KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD------------KDN 113 (192)
Q Consensus 46 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~------------~~~ 113 (192)
+|+++|+.+++++.+++.+++.++.++++++..+-......+. .+++|+++++-. .+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----------~~~v~~~iFNLGYLPggDk~i~T~~~T 70 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----------EGPVDAAIFNLGYLPGGDKSITTKPET 70 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB-CTS-TTSB--HHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----------cCCcCEEEEECCcCCCCCCCCCcCcHH
Confidence 5899999999999999999999998899999988776654442 248999988732 233
Q ss_pred cHHHHHHHHhccCCCeEEEEeCccCCcc
Q 029536 114 YVNYHKRLIELVKVGGVIGYDNTLWGGS 141 (192)
Q Consensus 114 ~~~~~~~~~~~L~~gG~lv~~d~~~~g~ 141 (192)
....++.+.++|+|||+|++. .|.|+
T Consensus 71 Tl~Al~~al~lL~~gG~i~iv--~Y~GH 96 (140)
T PF06962_consen 71 TLKALEAALELLKPGGIITIV--VYPGH 96 (140)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE--E--ST
T ss_pred HHHHHHHHHHhhccCCEEEEE--EeCCC
Confidence 467889999999999998874 44443
No 224
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.4e-06 Score=72.42 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHhH----cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe
Q 029536 2 MTSPDEAQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 2 ~~~~~~~~~l~~l~~~----~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
|++-..++.|+..+.. ...+.++|+.||+|.+++.+|+. ..+|++||++|+.++-|+.|....|+ .+.+|++
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~ 437 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIV 437 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCc-cceeeee
Confidence 4455566777776653 34578899999999999999976 46899999999999999999999999 6999999
Q ss_pred CCchhHHHHHHhhhhcccccCCCccc-EEEEeCCCcCcH-HHHHHHHhccCCCeEEE
Q 029536 78 GPALPLLDQLIQDVSSTKEKYHGTFD-FVFVDADKDNYV-NYHKRLIELVKVGGVIG 132 (192)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~D-~v~id~~~~~~~-~~~~~~~~~L~~gG~lv 132 (192)
|-+++.++.+... .-++-+ ++++|.+..... .+++.++..-++--++.
T Consensus 438 gqaE~~~~sl~~~-------~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy 487 (534)
T KOG2187|consen 438 GQAEDLFPSLLTP-------CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY 487 (534)
T ss_pred cchhhccchhccc-------CCCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence 9888877776411 112345 778888854443 44444544443554443
No 225
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.27 E-value=3.7e-06 Score=70.90 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCC-ceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAH-KIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
++-++||.=+|+|.=++..+..++...+|+.-|+++++++..++|++..++.. ++++.+.|+..++...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~---------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR---------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS----------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc----------
Confidence 34589999999999999888887645799999999999999999999999987 7999999998877421
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
...||+|=+|+. .....+++.+.+.++.||+|.+.-+
T Consensus 119 -~~~fD~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 119 -QERFDVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -TT-EEEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -cccCCEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 679999988874 4457899999999999999998655
No 226
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.26 E-value=8.2e-06 Score=74.20 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhC---CC--------------------------------------CcEEEEEeCCchhH
Q 029536 19 NAKNTMEIGVFTGYSLLATALAI---PD--------------------------------------DGKILALDITKEHY 57 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~---~~--------------------------------------~~~v~~vD~~~~~~ 57 (192)
+...++|-+||+|...+..|... ++ ..+++++|++++++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 45789999999999998876521 11 13699999999999
Q ss_pred HHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 58 EKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 58 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
+.|++|+..+|+.+.+++.++|..+..... ..++||+|+.+++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPP 312 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCC
Confidence 999999999999888999999987653211 1357999999987
No 227
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=65.86 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
-...+|+|.|.|..+..+...+| ++.+++.+...+-.+++++. . .|+.+.+|..+..|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~P-------------- 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDTP-------------- 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-C----CcceecccccccCC--------------
Confidence 37899999999999999998765 48899999888877777664 3 37888888755432
Q ss_pred CcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 100 GTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 100 ~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+-|+||+-+- -++...+++++++.|+|||.|++-+..
T Consensus 236 -~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 236 -KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred -CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 3468987643 455688999999999999977775554
No 228
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.22 E-value=2.4e-06 Score=69.49 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=69.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhC----C---CCcEEEEEeCCchhHHHHHHHH------------------HHc-----C
Q 029536 19 NAKNTMEIGVFTGYSLLATALAI----P---DDGKILALDITKEHYEKGLPII------------------QKA-----G 68 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~----~---~~~~v~~vD~~~~~~~~a~~~~------------------~~~-----~ 68 (192)
++-+|+..||++|.-.-.+|-.+ + ...+|+++|+++.++++|++-. .+. +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999998555544332 2 1358999999999999998641 110 0
Q ss_pred -------CCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 69 -------VAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 69 -------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+...|+|...|..+. .. +..++||+||+-.. .......++.+.+.|+|||++++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~--~~---------~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAK--QW---------AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCC--CC---------ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 113455555554331 00 01468999997432 445678899999999999999864
No 229
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.22 E-value=1.9e-05 Score=65.15 Aligned_cols=108 Identities=9% Similarity=0.036 Sum_probs=76.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCC---CcEEEEEeCCchhHHHHHHHHHHcCCCCceEE--EeCCchhHHHHHHhhhhc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDVSS 93 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~~ 93 (192)
++..++|+|||.|.-+..|++++.. ..+++++|+|.++++.+.+.+....+ +.+++ +++|..+.+..+...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~--- 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRP--- 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccc---
Confidence 3458999999999999988887742 36899999999999999998873333 34544 888887765544210
Q ss_pred ccccCCCcccEEEEeCC------CcCcHHHHHHHHh-ccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDAD------KDNYVNYHKRLIE-LVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~------~~~~~~~~~~~~~-~L~~gG~lv~ 133 (192)
.......+++.-+. +.....+++.+.+ .|+||+.+++
T Consensus 152 ---~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 152 ---ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ---cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 00234566665543 3345678888888 9999998776
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.20 E-value=7.6e-06 Score=65.86 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCCEEEEEccchhHHHHHH----HHhCCC----CcEEEEEeCCchhHHHHHHHHHH-----cCCC---------------
Q 029536 19 NAKNTMEIGVFTGYSLLAT----ALAIPD----DGKILALDITKEHYEKGLPIIQK-----AGVA--------------- 70 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~l----a~~~~~----~~~v~~vD~~~~~~~~a~~~~~~-----~~~~--------------- 70 (192)
++-+|+..||++|.-.-.| .+.++. ..+|+++|+|...++.|+.-.=. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3779999999999743333 344432 47899999999999999742111 1111
Q ss_pred --------CceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 71 --------HKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 71 --------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..|+|...|..+-.. ..+.||+||+--. .+...++++.....|+|||++++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~------------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP------------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc------------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 124444444322111 2678999997533 455678899999999999999974
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.3e-05 Score=60.42 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHhhhhcccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDVSSTKE 96 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~ 96 (192)
+...|+|+|+..|+|+..+++.+.+.+.|+++|+.|-. .-++|.++++|... .+..+...
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~------ 106 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEA------ 106 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHH------
Confidence 45799999999999999999988767889999998732 22568899988643 33443322
Q ss_pred cCCCcccEEEEeCCC--------cCc------HHHHHHHHhccCCCeEEEEeCcc
Q 029536 97 KYHGTFDFVFVDADK--------DNY------VNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 97 ~~~~~~D~v~id~~~--------~~~------~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
....++|+|+.|..+ +++ ...++.+...|++||.+++-...
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 113457999999763 221 22445566899999999986543
No 232
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.18 E-value=1.5e-05 Score=58.15 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=55.7
Q ss_pred HHHHHHHHhH----cCCCEEEEEccchhHHHHHHHHhC---CCCcEEEEEeCCchhHHHHHHHHHHcC--CCCceEEEeC
Q 029536 8 AQFFSMLLKL----INAKNTMEIGVFTGYSLLATALAI---PDDGKILALDITKEHYEKGLPIIQKAG--VAHKIDFREG 78 (192)
Q Consensus 8 ~~~l~~l~~~----~~~~~ileiG~g~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~ 78 (192)
.+++..++.. .++.+|+|+|||-|+.+..++..+ ..+.+|+++|.++...+.+.+..++.+ ...+.++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4455555555 678899999999999999999832 136899999999999999999888776 3345555555
Q ss_pred Cc
Q 029536 79 PA 80 (192)
Q Consensus 79 d~ 80 (192)
+.
T Consensus 90 ~~ 91 (141)
T PF13679_consen 90 DI 91 (141)
T ss_pred ch
Confidence 43
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.16 E-value=1.4e-05 Score=70.29 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHhHc-------CCCEEEEEccchhHHHHHHHHhCCC-------CcEEEEEeCCchhHHHHHHHHHHcCC
Q 029536 4 SPDEAQFFSMLLKLI-------NAKNTMEIGVFTGYSLLATALAIPD-------DGKILALDITKEHYEKGLPIIQKAGV 69 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~-------~~~~ileiG~g~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~~ 69 (192)
++...++|-.++... ...+|||.+||+|.....++..++. ...++++|+++..+..++.++...+.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 445555555544221 3468999999999999998876531 25789999999999999999887652
Q ss_pred CCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 70 AHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 70 ~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
..+.+...|.......... ...++||+|+.+++
T Consensus 89 -~~~~i~~~d~l~~~~~~~~-------~~~~~fD~IIgNPP 121 (524)
T TIGR02987 89 -LEINVINFNSLSYVLLNIE-------SYLDLFDIVITNPP 121 (524)
T ss_pred -CCceeeecccccccccccc-------cccCcccEEEeCCC
Confidence 2345555654322110000 01368999998877
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.16 E-value=6.5e-06 Score=62.32 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=76.0
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
..+.|+|+|+|-.+...|++ ..+|++++.+|...+.|.+|+.-.|. .+++++.+|+.++- -.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~--------------fe 95 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD--------------FE 95 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc--------------cc
Confidence 68999999999988877766 46899999999999999999866565 68999999997761 24
Q ss_pred cccEEEEeC---C--CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 101 TFDFVFVDA---D--KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 101 ~~D~v~id~---~--~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..|+|++.. . .+.....++.+++.||..+.++-.
T Consensus 96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 568886542 2 344566788888899999888753
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.15 E-value=7.3e-06 Score=59.43 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=49.3
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
.++|+||+.|..+.+++...+ ..+++++|++|..++.++++++..++. ++++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 479999999999999998765 579999999999999999999988773 5777766543
No 236
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.09 E-value=3.8e-05 Score=59.53 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=78.8
Q ss_pred HHHHHhHc-CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 11 FSMLLKLI-NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 11 l~~l~~~~-~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
|..++... +..++.||||-.++..+++....+ ..++++.|+++..++.|.+++.+.++.++++.+.+|....+..
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--- 82 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--- 82 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence 34444433 344599999999999999998866 7899999999999999999999999999999999998655432
Q ss_pred hhhcccccCCCcccEEEEeCCC-cCcHHHHHHHHhccC
Q 029536 90 DVSSTKEKYHGTFDFVFVDADK-DNYVNYHKRLIELVK 126 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~-~~~~~~~~~~~~~L~ 126 (192)
+..+|.|+|-+.- .-..++++.-.+.|+
T Consensus 83 ---------~d~~d~ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 83 ---------EDEIDVIVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred ---------cCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence 4579999987642 223455555555554
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.07 E-value=8.3e-05 Score=60.92 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=67.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
++..++|..+|.|+-+..++..++ .++|+++|.++.+++.+++.+... ..++++++++..++...+... .
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~-------~ 89 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL-------L 89 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc-------C
Confidence 446899999999999999999887 599999999999999999988754 468999999988776555321 1
Q ss_pred CCcccEEEEeCC
Q 029536 99 HGTFDFVFVDAD 110 (192)
Q Consensus 99 ~~~~D~v~id~~ 110 (192)
..++|.|++|-.
T Consensus 90 ~~~vDgIl~DLG 101 (305)
T TIGR00006 90 VTKIDGILVDLG 101 (305)
T ss_pred CCcccEEEEecc
Confidence 357999999853
No 238
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.05 E-value=4.6e-05 Score=59.34 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=73.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+||-+|.++|....++++...+.+.|++||.++...+..-...++ .+|+--+-+|+...... ..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y---------~~ 139 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKY---------RM 139 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGG---------TT
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHh---------hc
Confidence 3467999999999999999999887789999999999765544433332 26788888888643211 11
Q ss_pred CCCcccEEEEeCCCcCcH-HHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYV-NYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~-~~~~~~~~~L~~gG~lv~ 133 (192)
.-+..|+||.|-.+.+.. -+..++...||+||.+++
T Consensus 140 lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 140 LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence 256899999998755444 455677789999997775
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.04 E-value=9.2e-05 Score=60.00 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHHHHh---HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 8 AQFFSMLLK---LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 8 ~~~l~~l~~---~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
-++|..+.. ..+|++|||+|+|.|..+......++.-.+++++|.|+.+.+.++..+........... .. ...
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~---~~~ 94 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RR---VLY 94 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hh---hhh
Confidence 344555543 35789999999999987766666666457899999999999999987765322111111 01 111
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.... .....|+|++... .....++++.+++.+.+ +||+
T Consensus 95 ~~~~---------~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 95 RDFL---------PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred cccc---------cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 1100 0223499987643 23455677777777766 4443
No 240
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=9.8e-05 Score=61.35 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=84.8
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+.+|+|-=+|+|.=++..|...+ ..+++.-|++|++.+.+++|++.+.. .....++.|+..++.+. +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~-----------~ 119 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHEL-----------H 119 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhc-----------C
Confidence 89999999999999999988776 34899999999999999999998744 35556669998887664 5
Q ss_pred CcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 100 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 100 ~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
..||+|=+|+. .....+++.+.+.++.||++.+.-+
T Consensus 120 ~~fd~IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 120 RAFDVIDIDPF-GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCccEEecCCC-CCCchHHHHHHHHhhcCCEEEEEec
Confidence 78999877663 4457788999999999999998544
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.97 E-value=7.6e-05 Score=62.53 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=81.6
Q ss_pred HHHhHcCCCEEEEEccchhHHHHHHHHhCC---C----------------------------Cc-------EEEEEeCCc
Q 029536 13 MLLKLINAKNTMEIGVFTGYSLLATALAIP---D----------------------------DG-------KILALDITK 54 (192)
Q Consensus 13 ~l~~~~~~~~ileiG~g~G~~~~~la~~~~---~----------------------------~~-------~v~~vD~~~ 54 (192)
.++.......++|==||+|...+..|...+ | .+ .++|+|+++
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 344444456899999999999998776542 1 11 378999999
Q ss_pred hhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCc-----------CcHHHHHHHHh
Q 029536 55 EHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD-----------NYVNYHKRLIE 123 (192)
Q Consensus 55 ~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~-----------~~~~~~~~~~~ 123 (192)
++++.|+.|.+.+|+.+.++|.++|...+-+. .+.+|+|+.+++.. -|..+.+.+.+
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP------------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765321 26899999998721 23445555667
Q ss_pred ccCCCeEEEE
Q 029536 124 LVKVGGVIGY 133 (192)
Q Consensus 124 ~L~~gG~lv~ 133 (192)
.++..+..++
T Consensus 333 ~~~~ws~~v~ 342 (381)
T COG0116 333 LLAGWSRYVF 342 (381)
T ss_pred HhcCCceEEE
Confidence 7777776665
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.97 E-value=1.9e-05 Score=63.47 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
...+-+-..+...+...|||||+|.|..|..|+... .+++++|+++...+..++.+. ..++++++.+|+.++-.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhcccc
Confidence 333344444445567899999999999999999874 789999999999888887654 34789999999986522
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCC---CeEEEEe
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKV---GGVIGYD 134 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~---gG~lv~~ 134 (192)
... .......|+...+..-...++.++...-+. ..++++.
T Consensus 91 ~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 91 YDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp GGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred HHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEe
Confidence 110 012445566655543344566666653333 3455543
No 243
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=5e-05 Score=58.63 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
.++..|....+...|.|+|||.+..+ ..++...+|.+.|.-+. .+. +...|...+ | +
T Consensus 62 ~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~~--Vtacdia~v-P-L- 118 (219)
T PF05148_consen 62 VIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NPR--VTACDIANV-P-L- 118 (219)
T ss_dssp HHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------STT--EEES-TTS--S---
T ss_pred HHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CCC--EEEecCccC-c-C-
Confidence 46666666666679999999998765 44443457999998642 123 445665332 1 1
Q ss_pred hhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 89 QDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.+++.|++++.-. -.++.+++..+.+.||+||.+.+.++-
T Consensus 119 ---------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 119 ---------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ----------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ---------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 2788999987655 578999999999999999999987764
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.87 E-value=0.00011 Score=60.89 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=62.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+.+++||+||++|++|-.+++. +.+|++||..+-. ..+. -.++|+++.+|...+.+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~----------- 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP----------- 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC-----------
Confidence 45679999999999999999976 5699999976522 1121 236899999998766432
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVG 128 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g 128 (192)
.+.+|++++|.... ..+..+.+.+.|..|
T Consensus 268 -~~~vDwvVcDmve~-P~rva~lm~~Wl~~g 296 (357)
T PRK11760 268 -RKNVDWLVCDMVEK-PARVAELMAQWLVNG 296 (357)
T ss_pred -CCCCCEEEEecccC-HHHHHHHHHHHHhcC
Confidence 46899999998622 345556666666555
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=9.8e-05 Score=54.70 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=69.6
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC--CceEEEeCCchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
..++++|||+|.| +|.+++.+|...+ ...|...|-+++.++..++........ +++....-+ ....+..++
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~--~~~aqsq~e--- 100 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL--IWGAQSQQE--- 100 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH--HhhhHHHHh---
Confidence 4567899999887 6777788887766 789999999999998888765443111 222222111 111111111
Q ss_pred ccccCCCcccEEEEeC-C--CcCcHHHHHHHHhccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDA-D--KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~-~--~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...||+|++.- . .++.....+.+..+|+|.|.-++
T Consensus 101 -----q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 101 -----QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred -----hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 45899998632 2 55667778888999999996554
No 246
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.83 E-value=8.9e-05 Score=56.86 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC------CCceEEEeCCchhHHHHHHhhhhc
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV------AHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
.-.+.|||||.|+....++..+| +..+.|+|+--..-+..++.+..... -.++.+...++..+++.+..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~---- 135 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE---- 135 (249)
T ss_pred cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh----
Confidence 34689999999999999999888 78899999998888888887766542 25678888888888877643
Q ss_pred ccccCCCcccEEEEeCCCc-----------CcHHHHHHHHhccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDADKD-----------NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.++.+-.|+--+.. .....+....-+|++||.+..
T Consensus 136 -----kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 136 -----KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred -----hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 23333233222111 113455666678999997763
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.81 E-value=9.1e-05 Score=60.41 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=49.5
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHc-CCCCceEEEeCCch-hHHHHHHhhhhcccccC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREGPAL-PLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~-~~~~~~~~~~~~~~~~~ 98 (192)
.++||||||.-..=--|+.... +-+.+++|+++..++.|+++++.. ++.++|+++..... ..+..+.. .
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--------~ 174 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--------P 174 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---------
T ss_pred eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--------c
Confidence 4799999976654222333333 689999999999999999999999 89999999876433 23333321 2
Q ss_pred CCcccEEEEeCC
Q 029536 99 HGTFDFVFVDAD 110 (192)
Q Consensus 99 ~~~~D~v~id~~ 110 (192)
.+.||+.++.++
T Consensus 175 ~e~~dftmCNPP 186 (299)
T PF05971_consen 175 NERFDFTMCNPP 186 (299)
T ss_dssp -S-EEEEEE---
T ss_pred cceeeEEecCCc
Confidence 568999999877
No 248
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00062 Score=55.32 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=73.5
Q ss_pred HHHHHHhHcC---CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHH
Q 029536 10 FFSMLLKLIN---AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQ 86 (192)
Q Consensus 10 ~l~~l~~~~~---~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 86 (192)
++...+.... ...++|..-|.|+-+..++..+++.++++++|.+|.+++.|++.+...+ ++++++++...++...
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence 4555554443 3589999999999999999999878999999999999999999987655 6999999998776665
Q ss_pred HHhhhhcccccCCCcccEEEEeCC
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
+... ..+++|-|++|-.
T Consensus 89 l~~~-------~i~~vDGiL~DLG 105 (314)
T COG0275 89 LKEL-------GIGKVDGILLDLG 105 (314)
T ss_pred HHhc-------CCCceeEEEEecc
Confidence 5422 2468999998843
No 249
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.73 E-value=0.0032 Score=49.74 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
.+++||-+|=.--.|....+... ..+|+.+|++++.++..++..++.|++ ++.++.|..+-+|.- .
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~--~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~----------~ 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL--PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEE----------L 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TT----------T
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC--CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHH----------H
Confidence 57899999955444433333333 479999999999999999999999984 999999988877653 2
Q ss_pred CCcccEEEEeCCC--cCcHHHHHHHHhccCCCe
Q 029536 99 HGTFDFVFVDADK--DNYVNYHKRLIELVKVGG 129 (192)
Q Consensus 99 ~~~~D~v~id~~~--~~~~~~~~~~~~~L~~gG 129 (192)
.++||++|.|++. +...-++.+....||..|
T Consensus 110 ~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp SS-BSEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6899999999984 445667888888888777
No 250
>PHA01634 hypothetical protein
Probab=97.68 E-value=0.0002 Score=50.99 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=57.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+.++|+|||.+.|.|+++++... ...|+++|+++...+..+++++...+-++..-.. +. +.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-eW----~~----------- 88 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-EW----NG----------- 88 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-cc----cc-----------
Confidence 467899999999999999999653 5789999999999999999887665433332221 11 11
Q ss_pred CCCcccEEEEeCC
Q 029536 98 YHGTFDFVFVDAD 110 (192)
Q Consensus 98 ~~~~~D~v~id~~ 110 (192)
.-+.||+..+|..
T Consensus 89 ~Y~~~Di~~iDCe 101 (156)
T PHA01634 89 EYEDVDIFVMDCE 101 (156)
T ss_pred cCCCcceEEEEcc
Confidence 1578999999986
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00013 Score=57.28 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=70.5
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC-chhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP-ALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~~~ 95 (192)
..+.+.+||||+.||+.|-.++... ..+|+++|..-..+..- + ..++++..+... .....+.-.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~tN~r~l~~~~~------- 141 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERTNVRYLTPEDF------- 141 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecCChhhCCHHHc-------
Confidence 3467899999999999999998763 57999999987655321 1 123566665543 332222211
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+..|++++|-.--.....+..+..++++++.++.
T Consensus 142 ---~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 142 ---TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ---ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 45789999998766677788888999999986654
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.57 E-value=0.00025 Score=58.17 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+...++|...|.|+-+..+++.++. ++++++|.+|++++.|++.+... .+++.+++++..++...+... .
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~------~ 89 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL------N 89 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT------T
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc------c
Confidence 34568999999999999999999884 99999999999999999877644 579999999987765555321 0
Q ss_pred CCCcccEEEEeCC
Q 029536 98 YHGTFDFVFVDAD 110 (192)
Q Consensus 98 ~~~~~D~v~id~~ 110 (192)
...++|-|++|..
T Consensus 90 ~~~~~dgiL~DLG 102 (310)
T PF01795_consen 90 GINKVDGILFDLG 102 (310)
T ss_dssp TTS-EEEEEEE-S
T ss_pred CCCccCEEEEccc
Confidence 1458999999843
No 253
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.56 E-value=0.0011 Score=46.74 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=66.5
Q ss_pred EEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH-HHHHHhhhhcccccCC-C
Q 029536 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDVSSTKEKYH-G 100 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~~~~-~ 100 (192)
++|+|||.|..+ .++...+....++++|+++.++..++..... .....+.+...+.... ++ + .. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----------~~~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP-F----------EDSA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC-C----------CCCC
Confidence 999999999987 4444333124789999999988875544332 1111167777776442 11 1 12 3
Q ss_pred cccEEEEeCCCc--CcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 101 TFDFVFVDADKD--NYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 101 ~~D~v~id~~~~--~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
.||++....... .....+..+.+.++|+|.+++......
T Consensus 119 ~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 119 SFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred ceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 799983333211 136788888999999998888766543
No 254
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00034 Score=53.43 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=68.0
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+.++|||.|+|+|..++.-++.. ...|++.|+.|......+-|.+.+++ .+.+...|...
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g-------------- 138 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG-------------- 138 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--------------
Confidence 4467899999999999888777653 47899999999888888888888875 57777776532
Q ss_pred cCCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv 132 (192)
.+..||+++..-. +......+. ....++..|..+
T Consensus 139 -~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 139 -SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAV 175 (218)
T ss_pred -CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEE
Confidence 1678999987532 332334444 445555555443
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0018 Score=49.82 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=76.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+..+||=+|..+|.....+++-.+ .+.+++||.+++..+..-...++ .+|+--+.+|+....... .
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~---------~ 141 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYR---------H 141 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhh---------h
Confidence 3567999999999999999999887 89999999999876544443333 357777888875432221 1
Q ss_pred CCCcccEEEEeCCCcCcHH-HHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVN-YHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~-~~~~~~~~L~~gG~lv~ 133 (192)
.-+..|+|+.|-.+.+..+ +..++...|++||.+++
T Consensus 142 ~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 142 LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 2567999999987655554 45678889999995554
No 256
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00014 Score=62.34 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=93.9
Q ss_pred HHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhh
Q 029536 12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 12 ~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 91 (192)
..+.+..++-+|||.=+++|.-++..|..++....+++-|.++..++..++|.+..+.++.++..+.|+....-....
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~-- 179 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM-- 179 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--
Confidence 345556677899999999999999999999866889999999999999999999888888888899998765433211
Q ss_pred hcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 92 SSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
....||+|=+|+. .....|++.+.+.++.||++++.-+
T Consensus 180 ------~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 180 ------VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ------cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence 1468999888764 4457789999999999999988544
No 257
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00029 Score=55.21 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=70.3
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
..++||||+.|+....+.... -.+++.+|.|..+++.++..-. .+ -.+..+.+|- ++++ + .++
T Consensus 74 p~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DE-E~Ld-f----------~en 136 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDE-EFLD-F----------KEN 136 (325)
T ss_pred cceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cc--eEEEEEecch-hccc-c----------ccc
Confidence 579999999999998877542 4789999999999987775321 11 1345566665 3443 3 378
Q ss_pred cccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEE
Q 029536 101 TFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 101 ~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
++|+|+..-. ..+.+..+.++...|||+|.++.
T Consensus 137 s~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 137 SVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred chhhhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 9999986533 45567788899999999999874
No 258
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.38 E-value=0.00048 Score=59.45 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=54.4
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
-+.+||||||+|..+.+|... +-..+++-+....-. ..+...+-|++.-+..+ +..-+ ++..
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~-qvqfaleRGvpa~~~~~---~s~rL-----------Pfp~ 179 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEA-QVQFALERGVPAMIGVL---GSQRL-----------PFPS 179 (506)
T ss_pred eEEEEeccceeehhHHHHhhC---CceEEEcccccCCch-hhhhhhhcCcchhhhhh---ccccc-----------cCCc
Confidence 357899999999999998865 334444433322111 11122223443222111 11122 2347
Q ss_pred CcccEEEEeCCC----cCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 100 GTFDFVFVDADK----DNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 100 ~~~D~v~id~~~----~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
+.||+|.+.-.. .+---++-.+-+.|+|||+++....
T Consensus 180 ~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 180 NAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 899999765331 1111244456689999999997554
No 259
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.38 E-value=0.00092 Score=53.66 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=67.2
Q ss_pred HhHcCCCEEEEEccchh--HHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh-hh
Q 029536 15 LKLINAKNTMEIGVFTG--YSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ-DV 91 (192)
Q Consensus 15 ~~~~~~~~ileiG~g~G--~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~ 91 (192)
+....-+..||||||.- ..+-.+|+...++++|+-+|++|-.+..++..+....- .+..++.+|..+.-.-+.. .+
T Consensus 64 a~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 64 AEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp HCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHH
T ss_pred HHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHH
Confidence 33335679999999933 35666777666689999999999999999998865432 3488999998764322210 00
Q ss_pred hcccccCCCcccEEEEe-----CCCcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 92 SSTKEKYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
...-++ ..+.=++++. .+.+....++..+...|.||++|++.....
T Consensus 143 ~~~lD~-~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 143 RGLLDF-DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCC--T-TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred HhcCCC-CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 000000 1222233222 123567889999999999999999876543
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.36 E-value=0.00021 Score=56.25 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=49.9
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC--C------CceEEEeCCchhHHHHHHhhhh
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--A------HKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~------~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
.+|||..+|.|.-++.++.. +++|+++|-+|-.....+.-+..+.. . .+++++++|+.++++ ..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~---- 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QP---- 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CH----
T ss_pred CEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hc----
Confidence 38999999999999998864 57899999999877766655443211 1 379999999999887 21
Q ss_pred cccccCCCcccEEEEeCC
Q 029536 93 STKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~ 110 (192)
..+||+|++|+-
T Consensus 149 ------~~s~DVVY~DPM 160 (234)
T PF04445_consen 149 ------DNSFDVVYFDPM 160 (234)
T ss_dssp ------SS--SEEEE--S
T ss_pred ------CCCCCEEEECCC
Confidence 689999999976
No 261
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.35 E-value=0.0023 Score=58.08 Aligned_cols=102 Identities=25% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCEEEEEccchhHHHHHHHHhC-------CC----CcEEEEEeCCchhH--------------HHHHHHHHHc-----CC
Q 029536 20 AKNTMEIGVFTGYSLLATALAI-------PD----DGKILALDITKEHY--------------EKGLPIIQKA-----GV 69 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~-------~~----~~~v~~vD~~~~~~--------------~~a~~~~~~~-----~~ 69 (192)
.-+|+|+|-|+|...+...+.. +. .-+++++|..|-.. +.+++..+.. |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877766544 11 24799999865222 2222222221 11
Q ss_pred ------CC--ceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCC-----cC-cHHHHHHHHhccCCCeEEE
Q 029536 70 ------AH--KIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADK-----DN-YVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 70 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~-----~~-~~~~~~~~~~~L~~gG~lv 132 (192)
.. +.+++.+|+.+.++.+ ...+|.+|.|+.. +. ..++|..+.++++|||.++
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-----------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL-----------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc-----------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 11 3567889999888876 4579999999751 11 3679999999999999987
No 262
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00038 Score=59.78 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+..+|-+|-|.|....++-..+| ..++++|+++|++++.|++++.-..- .+.+++-.|..+++.+.... ....
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~-----~~~~ 368 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKS-----QQED 368 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhc-----cccc
Confidence 34688888888999998888887 68999999999999999999864433 36777788888888876532 1136
Q ss_pred CcccEEEEeCC----------CcC--cHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 100 GTFDFVFVDAD----------KDN--YVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 100 ~~~D~v~id~~----------~~~--~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
..||++++|.+ +.. ...++......|.|.|+++++-+..+
T Consensus 369 ~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 369 ICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred cCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 78999999865 111 13456667789999999988755443
No 263
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.27 E-value=0.0015 Score=52.02 Aligned_cols=96 Identities=9% Similarity=0.066 Sum_probs=68.0
Q ss_pred HHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHH
Q 029536 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 8 ~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 87 (192)
..+++.+-...+...|.|+|||-+-.+. . .-..|.++|+-+ .+-+++.+|.... +
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-P-- 223 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-P-- 223 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-c--
Confidence 3466666666666789999999887544 2 135688888853 2344556665542 1
Q ss_pred HhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..+++.|++++.-. -.+..+++..+.+.|++||.+.+..+-
T Consensus 224 ---------l~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 224 ---------LEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ---------CccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 13789999876544 567889999999999999999987664
No 264
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.25 E-value=0.00071 Score=56.87 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=79.4
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..++..++++|||.|.....++..- ...+++++.++..+..+.......++..+..+...+.-.. +
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~------------~ 173 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM------------P 173 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC------------C
Confidence 3445578999999999999998763 5789999999988888887777777766666655543221 2
Q ss_pred cCCCcccEEEE-eCC--CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 97 KYHGTFDFVFV-DAD--KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 97 ~~~~~~D~v~i-d~~--~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
+.+..||.+.+ +.. .......+..+.+.++|||+.+.-+.
T Consensus 174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 34789999854 433 45667888999999999999987443
No 265
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.10 E-value=0.0087 Score=49.25 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHh---------HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc
Q 029536 3 TSPDEAQFFSMLLK---------LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK 72 (192)
Q Consensus 3 ~~~~~~~~l~~l~~---------~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 72 (192)
++-+.+.|++-|.- .....++|-+|+| .|..+...|+++. .++|+.+|+.+..++.|++ + |...-
T Consensus 144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~ 218 (354)
T KOG0024|consen 144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVT 218 (354)
T ss_pred CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEE
Confidence 56677777776542 2345799999999 6888888888887 7899999999999999998 3 43211
Q ss_pred eEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 73 IDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 73 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
...-+.+..+.+.+.. +...+ ...+|+.|--+. ...-++.+...++.||.+++..+
T Consensus 219 ~~~~~~~~~~~~~~~v---~~~~g--~~~~d~~~dCsG---~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 219 DPSSHKSSPQELAELV---EKALG--KKQPDVTFDCSG---AEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred eeccccccHHHHHHHH---Hhhcc--ccCCCeEEEccC---chHHHHHHHHHhccCCEEEEecc
Confidence 1111112122222221 11112 345898764332 23446677889999999887654
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.10 E-value=0.0078 Score=50.08 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=68.1
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+.++|+-+|+| .|..+..+|+++ ..+|+++|.+++..+.|++. |. -.++.....+..+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~-------- 226 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV-------- 226 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh--------
Confidence 3456788887766 667888899887 48999999999999888873 22 223333233444444
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.+.||+|+.-.. ...++...+.|++||.+++-...
T Consensus 227 ---~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 ---KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 234999876443 55678888999999999886655
No 267
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.02 E-value=0.0046 Score=54.19 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCC---CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP 79 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 79 (192)
++++..++|..++...+..+|+|-.||+|+.....+..+.. ...++|.|+++.....++.++--++....+...++|
T Consensus 170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 45677778888877655668999999999988887777642 367999999999999999999888885445666666
Q ss_pred chhHHHHHHhhhhcccccCCCcccEEEEeCCC----------------------------cCcHHHHHHHHhccCCCe--
Q 029536 80 ALPLLDQLIQDVSSTKEKYHGTFDFVFVDADK----------------------------DNYVNYHKRLIELVKVGG-- 129 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~----------------------------~~~~~~~~~~~~~L~~gG-- 129 (192)
......... .....+||+|+..++. .....++..+...|+|||
T Consensus 250 tl~~~~~~~-------~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~a 322 (489)
T COG0286 250 TLSNPKHDD-------KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRA 322 (489)
T ss_pred cccCCcccc-------cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceE
Confidence 533211100 0124678888765430 112457778889999865
Q ss_pred -EEEEeCccCCc
Q 029536 130 -VIGYDNTLWGG 140 (192)
Q Consensus 130 -~lv~~d~~~~g 140 (192)
+++.+++++.|
T Consensus 323 aivl~~gvlfr~ 334 (489)
T COG0286 323 AIVLPDGVLFRG 334 (489)
T ss_pred EEEecCCcCcCC
Confidence 56666666654
No 268
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.94 E-value=0.00031 Score=56.26 Aligned_cols=119 Identities=19% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc------eEEEeCCc---hhHHHHHHh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK------IDFREGPA---LPLLDQLIQ 89 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~------v~~~~~d~---~~~~~~~~~ 89 (192)
++.++||||||.-.. .+..+.+.-.+++..|..+.-.+..++.+++.+.-++ +.-+.++. .+..+++++
T Consensus 56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456899999987332 2333333246799999999988888887765432111 00112221 111222222
Q ss_pred hhhcc------c----cc---CCCcccEEEEeC-------CCcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 90 DVSST------K----EK---YHGTFDFVFVDA-------DKDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 90 ~~~~~------~----~~---~~~~~D~v~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
.++.- . +. .+++||+|+.-. +.+.|...++++.++|||||.+++..++-.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 21100 0 00 123599987653 256788899999999999999998777643
No 269
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.93 E-value=0.026 Score=47.34 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=69.0
Q ss_pred CCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhccccc
Q 029536 20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 20 ~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~~ 97 (192)
+.+++-+||| .|..+..+++.+. ..+|+.+|.+++.++.|++.... +.+..... +.........
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t--------- 234 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT--------- 234 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh---------
Confidence 3489999999 6777777888775 68999999999999999885421 11211112 1111111111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
....+|++|--.. ....++.+.+.+++||.+++-.+..
T Consensus 235 ~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 GGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1237999876444 4667889999999999998866553
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.91 E-value=0.0037 Score=54.09 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=58.7
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+-++|+|+.+|.|+.+..|... + |..+..-|..-...-..+-.-|+-. ..-|..+-++.
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~----VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsT---------- 423 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P----VWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFST---------- 423 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C----ceEEEecccCCCCcchhhhhcccch----hccchhhccCC----------
Confidence 344579999999999988877643 2 5555554432111112222233311 11233332222
Q ss_pred cCCCcccEEEEeCC------CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 97 KYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 97 ~~~~~~D~v~id~~------~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++..||+|..+.- +-....++-..-+.|+|+|.+++.|.
T Consensus 424 -YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 424 -YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred -CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 2678999988754 22234556666799999999998665
No 271
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.88 E-value=0.0095 Score=48.10 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=71.2
Q ss_pred HHHHHHHhHcC-------CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC------------
Q 029536 9 QFFSMLLKLIN-------AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV------------ 69 (192)
Q Consensus 9 ~~l~~l~~~~~-------~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------ 69 (192)
-++..|....+ ..+||-=|||.|..+..+|.. +..+.+.|.|--|+-...-.+.....
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 34555555443 368999999999999999976 67899999998775333322221010
Q ss_pred ---------------------------CCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEE----EeCCCcCcHHHH
Q 029536 70 ---------------------------AHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVF----VDADKDNYVNYH 118 (192)
Q Consensus 70 ---------------------------~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~----id~~~~~~~~~~ 118 (192)
..++.+..||..+....- ...++||.|+ ||. ..+..+++
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~---------~~~~~~d~VvT~FFIDT-A~Ni~~Yi 185 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPD---------ENKGSFDVVVTCFFIDT-AENIIEYI 185 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCc---------ccCCcccEEEEEEEeec-hHHHHHHH
Confidence 013444445544432210 0146899884 554 56678999
Q ss_pred HHHHhccCCCeEEE
Q 029536 119 KRLIELVKVGGVIG 132 (192)
Q Consensus 119 ~~~~~~L~~gG~lv 132 (192)
+.+.++|||||+-|
T Consensus 186 ~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 186 ETIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHHhccCCEEE
Confidence 99999999999555
No 272
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.75 E-value=0.013 Score=46.40 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=73.4
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+...||=+|+++|.+.....+...+.+.|++||.++..=+..-.. +.-.+|+--+..|+...... .
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm---AkkRtNiiPIiEDArhP~KY---------R 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM---AKKRTNIIPIIEDARHPAKY---------R 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH---hhccCCceeeeccCCCchhe---------e
Confidence 44567999999999999999998887789999999998654333222 22236777777887543211 1
Q ss_pred cCCCcccEEEEeCCCcCcHHHH-HHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYH-KRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~-~~~~~~L~~gG~lv~ 133 (192)
..-+-.|+||.|-.+.+..+++ -++...||+||-+++
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEE
Confidence 1134679999998765555444 356689999997665
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.001 Score=55.20 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
...|++|||+|.|.|.....+-.-+|.-..++.++.+|..-+........... ....-...|...-...+.
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp-------- 181 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP-------- 181 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC--------
Confidence 45688999999998877666666677557788889888665555443333222 222222222211111111
Q ss_pred cCCCcccEEEEeCC------CcCcHHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~------~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....|+++++-.. .......++.++.++.|||.+++-
T Consensus 182 -~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 182 -AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred -ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 1456777765322 223445789999999999988864
No 274
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.032 Score=44.43 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=83.1
Q ss_pred HHHHHHHH----HHhHcCCCEEEEEccchhHHHHHHHHhCCC---CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC
Q 029536 6 DEAQFFSM----LLKLINAKNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG 78 (192)
Q Consensus 6 ~~~~~l~~----l~~~~~~~~ileiG~g~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 78 (192)
..+.+|+. ++....+...+|+|+|+-.-++.+.+++.. -.+++.+|++...++...+.+......-.+.-+.+
T Consensus 61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~ 140 (321)
T COG4301 61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG 140 (321)
T ss_pred hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh
Confidence 34555554 445667889999999999999999988752 26899999999998654444433222234666778
Q ss_pred CchhHHHHHHhhhhcccccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEE
Q 029536 79 PALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
|.+.-+..+. ..++-=++|+.+. +.....++.++...|+||-++++
T Consensus 141 ~~~~~La~~~---------~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 141 DYELALAELP---------RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred hHHHHHhccc---------CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 7766665553 1344456666654 44557799999999999998876
No 275
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.66 E-value=0.0087 Score=42.27 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=60.9
Q ss_pred chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEe
Q 029536 29 FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVD 108 (192)
Q Consensus 29 g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id 108 (192)
|.|..+..+|+... .+++++|.+++..+.+++ .|.. .++..+..++.+.+.+- .....+|+||--
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~------~~~~~~d~vid~ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIREL------TGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHH------TTTSSEEEEEES
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccc------cccccceEEEEe
Confidence 56889999999874 899999999988877665 4421 22222222233333221 012479998654
Q ss_pred CCCcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 109 ADKDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 109 ~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
.. ....++...+.++++|.+++-....
T Consensus 66 ~g---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 66 VG---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SS---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cC---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 32 3567888999999999998865543
No 276
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0092 Score=49.84 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=74.3
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCC---CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhh
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIP---DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVS 92 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 92 (192)
...+..+|||+++..|..++.+..++- ..+.|++=|.++......+.-+....- ++..+...++..+ +...- .
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~--~ 227 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYL--K 227 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-ccccc--c
Confidence 345668999999999999999887753 135899999999888777766644332 3444444443221 11100 0
Q ss_pred cccccCCCcccEEEEeCC--------------Cc------------CcHHHHHHHHhccCCCeEEEEeCc
Q 029536 93 STKEKYHGTFDFVFVDAD--------------KD------------NYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~--------------~~------------~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++.+.....||-|++|.+ .. -...++.+.+++||+||.+|+.-+
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 000112468999999954 00 013466777899999999997543
No 277
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.62 E-value=0.0067 Score=48.22 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=50.2
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
.|.+|+|||||.==.++.+... +++.+++++|++..+++....++...+...++.+ .|...- . .
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v--~Dl~~~---~----------~ 168 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARV--RDLLSD---P----------P 168 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE--E-TTTS---H----------T
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE--eeeecc---C----------C
Confidence 4789999999877666655543 3468999999999999999999999887544444 443222 1 2
Q ss_pred CCcccEEEEe
Q 029536 99 HGTFDFVFVD 108 (192)
Q Consensus 99 ~~~~D~v~id 108 (192)
....|+.++-
T Consensus 169 ~~~~DlaLll 178 (251)
T PF07091_consen 169 KEPADLALLL 178 (251)
T ss_dssp TSEESEEEEE
T ss_pred CCCcchhhHH
Confidence 5678999874
No 278
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.61 E-value=0.014 Score=40.42 Aligned_cols=88 Identities=17% Similarity=0.060 Sum_probs=59.2
Q ss_pred cchhHHHHHHHHhCCCCc-EEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHhhhhcccccCCCcccE
Q 029536 28 VFTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDVSSTKEKYHGTFDF 104 (192)
Q Consensus 28 ~g~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~D~ 104 (192)
||.|..+..+++.+.... .++.+|.+++..+.+++ ..+.++.+|..+ .+.+.. -.+.+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~----------i~~a~~ 65 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAG----------IEKADA 65 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTT----------GGCESE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcC----------ccccCE
Confidence 556788888887775455 89999999998777665 347789999765 344432 457899
Q ss_pred EEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 105 VFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 105 v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
+++..+.....-..-...+.+.|...++.
T Consensus 66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 66 VVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp EEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred EEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 99887654444444445566777776654
No 279
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0051 Score=52.51 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=52.5
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
.+||||+|+|..+...+++. .-.|+++|.-..+.+.|++...+.|..++++++...+.+.
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 57999999999998888775 3569999999999999999999999999999988766543
No 280
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.59 E-value=0.0063 Score=46.62 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=61.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhH------HHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY------EKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDV 91 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 91 (192)
....+|+|+-.|.|++|..++....+.+.|++.-..+... ...+....+... .+++.+-.+...+.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~------- 118 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG------- 118 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-------
Confidence 3456899999999999999999887778898887654311 111111111111 23333322221111
Q ss_pred hcccccCCCcccEEEEeCC----------CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 92 SSTKEKYHGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..+..|+++.... ......++..+.+.|||||++++.|..
T Consensus 119 ------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 ------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 1445566654211 222345777888999999988775543
No 281
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.041 Score=42.03 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-Cchh--HHHHHHhhhhccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALP--LLDQLIQDVSSTK 95 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~~~~~~~~~ 95 (192)
+..+|||+||..|.|+.-.-+...+++.|.+||+-.-. ..+.++++.+ |..+ ...++...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~----- 131 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEA----- 131 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHh-----
Confidence 45799999999999998877776568999999985311 1134556655 3322 22222211
Q ss_pred ccCCCcccEEEEeCCC--------cCcH------HHHHHHHhccCCCeEEEEeCccCCc
Q 029536 96 EKYHGTFDFVFVDADK--------DNYV------NYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~--------~~~~------~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
....+.|+|+.|..+ +++. ..+..+...++|+|.+++. +|.|
T Consensus 132 -lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g 187 (232)
T KOG4589|consen 132 -LPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG 187 (232)
T ss_pred -CCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence 124678999988541 1211 1233345788899999985 4544
No 282
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.22 E-value=0.12 Score=40.25 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=64.0
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcC-----------------------------
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAG----------------------------- 68 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~----------------------------- 68 (192)
.|-++.|-+||.|+....+.-..++ -..|++-|+++++++.|++|+.-..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3568999999999987776654432 2689999999999999998775211
Q ss_pred ------------CCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC------Cc------CcHHHHHHHHhc
Q 029536 69 ------------VAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD------KD------NYVNYHKRLIEL 124 (192)
Q Consensus 69 ------------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~------~~------~~~~~~~~~~~~ 124 (192)
-.....+.+.|..+.-+.-... .....|+|+.|-+ ++ ....+++.+.+.
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-------~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~v 203 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-------AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPV 203 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-------TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-------cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhh
Confidence 1112456666655432211000 1334699999955 11 235789999999
Q ss_pred cCCCeEEEEeC
Q 029536 125 VKVGGVIGYDN 135 (192)
Q Consensus 125 L~~gG~lv~~d 135 (192)
|.++++|++.|
T Consensus 204 Lp~~sVV~v~~ 214 (246)
T PF11599_consen 204 LPERSVVAVSD 214 (246)
T ss_dssp S-TT-EEEEEE
T ss_pred CCCCcEEEEec
Confidence 97778887744
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.19 E-value=0.0029 Score=51.39 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=71.8
Q ss_pred CCCEEEEEccchhHHHH-HHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFTGYSLL-ATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~-~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
....|+|+-+|.||.|+ ++.++ . ...|.++|.+|..++..+.+++..++.++..++.+|....-+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~------------ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP------------ 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc------------
Confidence 34789999999999999 55544 2 579999999999999999999998888888888887654322
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCC-Ce-EEEEeCccC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKV-GG-VIGYDNTLW 138 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~-gG-~lv~~d~~~ 138 (192)
....|-|.+.--+.....+ ..+.+.|+| || ++-++...-
T Consensus 260 -~~~AdrVnLGLlPSse~~W-~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 260 -RLRADRVNLGLLPSSEQGW-PTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred -cccchheeeccccccccch-HHHHHHhhhcCCcEEEEecccc
Confidence 4566777665433222221 223344454 44 777766553
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.16 E-value=0.061 Score=44.57 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+.++||-+|+| .|..+..+|+... ..+++++|.+++..+.+++ +|.. . ++..+..++ .+....
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~-~~~~~~------- 232 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGAD-K--LVNPQNDDL-DHYKAE------- 232 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCc-E--EecCCcccH-HHHhcc-------
Confidence 46788888875 5556667777753 3479999999988877765 3432 1 111111111 222111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.+.+|+||- ..- -...++.+.+.|++||.++.-..
T Consensus 233 -~g~~D~vid-~~G--~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 233 -KGYFDVSFE-VSG--HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CCCCCEEEE-CCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence 345898764 421 13456778889999998887543
No 285
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.07 E-value=0.18 Score=44.49 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEE--EeCC----------chhHH
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGP----------ALPLL 84 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d----------~~~~~ 84 (192)
.++.+|+-+|+| .|..++..|+.+. ++|+++|.+++..+.+++ +|.. .+.+ ...+ ..++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence 468899999999 6778888888874 589999999999887776 2321 1111 0100 01111
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcC--cHHH-HHHHHhccCCCeEEEEeCccCCc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDN--YVNY-HKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~--~~~~-~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
+..... ....-..+|+|+--..... .... .+...+.+||||+|+.-.+..+|
T Consensus 236 ~~~~~~----~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMAL----FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHH----HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 110000 0000246899876554221 2234 48899999999998876554334
No 286
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=96.05 E-value=0.15 Score=37.33 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=62.2
Q ss_pred HHHHHHHHHhHcC--CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 7 EAQFFSMLLKLIN--AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 7 ~~~~l~~l~~~~~--~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
|...|...+.... +--|||+|-|.|..=-.|-+.+| +-+++.+|-.-..-- .-.++.-.++.||..+++
T Consensus 14 QR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 14 QRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHh
Confidence 3444555555444 35799999999998888998888 789999997521110 112345678999999999
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCc------HHHH-HHHHhccCCCeEEEEeCccC
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNY------VNYH-KRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~------~~~~-~~~~~~L~~gG~lv~~d~~~ 138 (192)
+.+... ..+.-++..|..-.+. ..++ ..+.++|.|||+++...-+.
T Consensus 85 ~~~~~~--------g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 85 PALARF--------GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHHH---------S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred HHHHhc--------CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 884322 5555666666432111 1122 23458999999999876554
No 287
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.99 E-value=0.09 Score=41.96 Aligned_cols=100 Identities=21% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHH-----HHHcCCCCceEE---EeCCchhHHHHHHhh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPI-----IQKAGVAHKIDF---REGPALPLLDQLIQD 90 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-----~~~~~~~~~v~~---~~~d~~~~~~~~~~~ 90 (192)
++.+|||+|+|+|.-++.+|... ...+...|..... +..+.+ .+...+...+.. ..+.+.+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 56789999999998888777654 5778888875433 222222 222222223333 33333332211
Q ss_pred hhcccccCCCc-ccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEE
Q 029536 91 VSSTKEKYHGT-FDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 91 ~~~~~~~~~~~-~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+. +|+|+..-. .+.+......+..+|..++++.+
T Consensus 159 --------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 159 --------LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred --------cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 233 899886433 56677888888888998885554
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=95.79 E-value=0.023 Score=46.27 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=41.3
Q ss_pred CceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCc---C------------c----HHHHHHHHhccCCCeEE
Q 029536 71 HKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD---N------------Y----VNYHKRLIELVKVGGVI 131 (192)
Q Consensus 71 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~---~------------~----~~~~~~~~~~L~~gG~l 131 (192)
...+++++|+.+.+..+. +++||+|++|++.. . + .+++..+.++|||||.+
T Consensus 7 ~~~~i~~gD~~~~l~~l~----------~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i 76 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP----------SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTM 76 (284)
T ss_pred CCCEEEeccHHHHHHhcc----------cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 356789999999887663 67999999998721 1 1 25677888999999988
Q ss_pred EEe
Q 029536 132 GYD 134 (192)
Q Consensus 132 v~~ 134 (192)
++.
T Consensus 77 ~i~ 79 (284)
T PRK11524 77 YIM 79 (284)
T ss_pred EEE
Confidence 763
No 289
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.79 E-value=0.01 Score=49.23 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHH-------HHHHHHHHcCCCC-ceE
Q 029536 3 TSPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYE-------KGLPIIQKAGVAH-KID 74 (192)
Q Consensus 3 ~~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~-~v~ 74 (192)
..++-.-++..++...+++.|+|=-.|+|......|.. ++-|+|.||+-.++. ..+.|+++.|..+ -+.
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fld 268 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLD 268 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhh
Confidence 34556666777777788899999999999887776654 688999999987766 4578899998654 467
Q ss_pred EEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 75 FREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
++.+|...- .+. ....||.|++|++
T Consensus 269 vl~~D~sn~--~~r---------sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 269 VLTADFSNP--PLR---------SNLKFDAIVCDPP 293 (421)
T ss_pred eeeecccCc--chh---------hcceeeEEEeCCC
Confidence 778876432 111 1468999999975
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.70 E-value=0.19 Score=42.43 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=65.8
Q ss_pred hHcCCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch-hHHHHHHhhhhc
Q 029536 16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL-PLLDQLIQDVSS 93 (192)
Q Consensus 16 ~~~~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~ 93 (192)
...+..+||.+|+|. |..+..+|+..+ ..++++++.+++..+.+++.. +. .++..... ++...+...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~----~vi~~~~~~~~~~~l~~~--- 249 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA----ETINFEEVDDVVEALREL--- 249 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc----EEEcCCcchHHHHHHHHH---
Confidence 344567899999987 888888998864 357999999998888777642 21 22222211 122222111
Q ss_pred ccccCCCcccEEEEeCCC------------------cCcHHHHHHHHhccCCCeEEEEeC
Q 029536 94 TKEKYHGTFDFVFVDADK------------------DNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.....+|+|+--... .+....++.+.+.++++|.++.-.
T Consensus 250 ---~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 250 ---TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ---cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 012368987542211 123456788889999999887644
No 291
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.64 E-value=0.14 Score=42.88 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=59.5
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+.++||-.|+| .|..+..+|+... ..+|+++|.+++..+.+++ .|.. .++.....++.+.+...
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~------ 255 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVREL------ 255 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHH------
Confidence 345788888875 4556666777653 2369999999988777654 3432 12222222222222211
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
..+.+|+|| |.. .....++.+.+.|+++|.++.-..
T Consensus 256 -~~~g~d~vi-d~~--G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 256 -TGGGVDYAF-EMA--GSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -hCCCCCEEE-ECC--CChHHHHHHHHHHhcCCEEEEEcc
Confidence 133689876 432 123457778889999998876443
No 292
>PRK13699 putative methylase; Provisional
Probab=95.64 E-value=0.018 Score=45.44 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=39.7
Q ss_pred eEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCc--------------C----cHHHHHHHHhccCCCeEEEE
Q 029536 73 IDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKD--------------N----YVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 73 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~--------------~----~~~~~~~~~~~L~~gG~lv~ 133 (192)
++++++|+.+.++.+. ++++|+|+.|++.. . ....+..+.+.|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp----------d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP----------DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC----------ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4688999999988875 78999999997631 0 13466777899999998875
No 293
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.62 E-value=0.32 Score=39.09 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=64.6
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCC--CCceEEEeCCchh-HHHHHHhhhhcccc
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGV--AHKIDFREGPALP-LLDQLIQDVSSTKE 96 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~~~~~~ 96 (192)
+..|+.+|||.- |+..-...+.+.+++=+|. |+.++.-++.+.+.+. ..+.+++..|..+ +...+... +
T Consensus 82 ~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~-----g 153 (260)
T TIGR00027 82 IRQVVILGAGLD--TRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAA-----G 153 (260)
T ss_pred CcEEEEeCCccc--cHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhC-----C
Confidence 568999999544 4443322232345555555 5566666777776543 3678888888753 23333211 2
Q ss_pred cCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 97 KYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 97 ~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
+.....-++++-+. .+....+++.+.....||+.|++|-+.
T Consensus 154 fd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 154 FDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 22233344444433 334556777777777799999987543
No 294
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.38 E-value=0.0063 Score=47.12 Aligned_cols=95 Identities=9% Similarity=0.066 Sum_probs=61.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
..|.++||+|+|.|..+..++-.+ .+|++.|.|..+....++ . +.+++. ..+.++.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k----k----~ynVl~--~~ew~~t----------- 166 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK----K----NYNVLT--EIEWLQT----------- 166 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh----c----CCceee--ehhhhhc-----------
Confidence 346899999999999999988664 468999999888765543 2 222221 1233221
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCC-CeEEEEeCcc
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKV-GGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~-gG~lv~~d~~ 137 (192)
+-+||+|.+-.. ..+.-..++.++..|+| +|.+|+.=++
T Consensus 167 -~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 167 -DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred -CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 557888864221 22345677788888888 7876664433
No 295
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.35 E-value=0.16 Score=43.13 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=64.0
Q ss_pred CEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh--hhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD--VSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~~~ 97 (192)
.+|--+|- |+.++.+|..+.. +..|+|+|+++..++...+ .+..+..-+....+.....+ +..|.++
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~--------G~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR--------GESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC--------CcceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45555554 6666666655542 4789999999987765543 23333333333323332211 1112221
Q ss_pred C-CCcccEEEEeCC------C----cCcHHHHHHHHhccCCCeEEEEeCccCCcc
Q 029536 98 Y-HGTFDFVFVDAD------K----DNYVNYHKRLIELVKVGGVIGYDNTLWGGS 141 (192)
Q Consensus 98 ~-~~~~D~v~id~~------~----~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~ 141 (192)
. -...|++++--+ . .......+.+.+.|++|-++++..+.+.|.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT 134 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT 134 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence 1 125677766533 1 112445666779999999999999888773
No 296
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.32 E-value=0.033 Score=39.69 Aligned_cols=50 Identities=30% Similarity=0.429 Sum_probs=38.0
Q ss_pred ceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC--CcC----cHHHHHHHHhccCCCeEEE
Q 029536 72 KIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDN----YVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 72 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~----~~~~~~~~~~~L~~gG~lv 132 (192)
.+++..+|+.+.++.+ ...+|+||.|+. ..+ ..++++.+.+++++||++.
T Consensus 32 ~L~L~~gDa~~~l~~l-----------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHHB------------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC-----------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 4677999999988876 579999999975 111 3689999999999999998
No 297
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.31 E-value=0.25 Score=40.34 Aligned_cols=99 Identities=21% Similarity=0.228 Sum_probs=59.7
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+..+||..|+| .|..+..+|+.. +.++++++.+++..+.+++ .+...-+.....+....+ ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~------- 228 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG------- 228 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh-------
Confidence 3445688888875 577888888875 4679999999887766544 344211111111111222 111
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+++ |... ....++.+.+.|+++|.++.-
T Consensus 229 --~~~~~D~vi-d~~g--~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 229 --LGGGFDVIF-DFVG--TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred --cCCCceEEE-ECCC--CHHHHHHHHHHhhcCCEEEEE
Confidence 145789765 3321 245677888999999988754
No 298
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.1 Score=43.67 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCEEEEEccchhHHHHHHHHhCC-------CCcEEEEEeCCchhHHHHHHHHHHcC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIP-------DDGKILALDITKEHYEKGLPIIQKAG 68 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~ 68 (192)
+..++|||.|.|..+..+++.+. ...++..||+|++..+.-++.++...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 46899999999999999887662 24799999999999999888887654
No 299
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.23 E-value=0.022 Score=44.34 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=50.4
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH-HHHHHhhhhcccccCC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL-LDQLIQDVSSTKEKYH 99 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~~~~ 99 (192)
-++|||||-.....+.-.. --.|+.||+++.. -.+.+.|..+. ++.. ..
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~----------~~ 102 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN----------ES 102 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC----------cc
Confidence 4899999965543333222 2359999998732 12233333221 1111 26
Q ss_pred CcccEEEEeCC------CcCcHHHHHHHHhccCCCeE
Q 029536 100 GTFDFVFVDAD------KDNYVNYHKRLIELVKVGGV 130 (192)
Q Consensus 100 ~~~D~v~id~~------~~~~~~~~~~~~~~L~~gG~ 130 (192)
++||+|.+.-. +...-+.+..+.+.|+|+|.
T Consensus 103 e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 103 EKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 78999976632 44566789999999999999
No 300
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.07 E-value=0.27 Score=37.47 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=52.5
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh--hhcccccC
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD--VSSTKEKY 98 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~~~~ 98 (192)
+|--+|.| +.++.+|..+. .+.+|+++|++++.++..++ |. ..+..-...+.+.+.... +.-+.+..
T Consensus 2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~-----g~---~p~~E~~l~~ll~~~~~~~~l~~t~~~~ 71 (185)
T PF03721_consen 2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNN-----GE---LPIYEPGLDELLKENVSAGRLRATTDIE 71 (185)
T ss_dssp EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT-----TS---SSS-CTTHHHHHHHHHHTTSEEEESEHH
T ss_pred EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhh-----cc---ccccccchhhhhccccccccchhhhhhh
Confidence 45566664 44444443332 25799999999987766553 11 111111111222211100 00000000
Q ss_pred --CCcccEEEEeCC----------CcCcHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 99 --HGTFDFVFVDAD----------KDNYVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 99 --~~~~D~v~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
-...|++|+.-+ ........+.+.+.++++.++++.-+.+.|
T Consensus 72 ~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 72 EAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp HHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred hhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 124688887643 122356777888999999999998887766
No 301
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.12 Score=37.97 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=69.7
Q ss_pred HHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 14 LLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 14 l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
++...+....+|+|+|.|...+..++.. .-.-+++|.+|=.+..++-..-++++....+|+.-|.-.+.
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d--------- 135 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD--------- 135 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---------
Confidence 3344444679999999999888877653 23568999999999888888778888888888877654431
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
-..|..+++-+..+...+.-..+..-+..|.-++.
T Consensus 136 -----l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 136 -----LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred -----ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 23344444434333334444555556777776663
No 302
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.01 E-value=0.099 Score=44.10 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHH
Q 029536 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (192)
Q Consensus 8 ~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 62 (192)
.++++.+......+.++|+|.|.|+.+.+++-.+ +-+|++||-+....+.|++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 4566777777788999999999999999998665 5799999999877666654
No 303
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=95.01 E-value=0.92 Score=38.66 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeC-CchhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....+=+.++.......++-..+|.+..+..+...++++.+++..+. -....+..++.+...|+ .+.++..+..+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~ 131 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLE 131 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHH
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHH
Confidence 5667777777888888889999999988887777766766777777664 23344555556666665 46666553334
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCC--eEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG--GVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~g--G~lv~~d~~ 137 (192)
.+.... ...-.+||+..+ +.-....++.+.+..+.. -.+++||++
T Consensus 132 ~l~~~l----------~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 132 ALEAAL----------RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp HHHHHH----------CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred HHHhhc----------cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 344332 457899999876 333344455555555554 477778886
No 304
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.98 E-value=0.34 Score=40.20 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=56.8
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+.++||-+|+| .|..+..+++......+++++|.+++.++.+++ .+. .... .+. ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~-~~---------- 219 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDI-PE---------- 219 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhh-hh----------
Confidence 346789999975 344455566642224689999999888777764 221 1111 111 11
Q ss_pred cCCCcccEEEEeCC-CcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 97 KYHGTFDFVFVDAD-KDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 97 ~~~~~~D~v~id~~-~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
...+|+|| |.. .......++.+.+.|++||.+++-.
T Consensus 220 --~~g~d~vi-D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 220 --DLAVDHAF-ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --ccCCcEEE-ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 22589875 443 2223557888899999999988644
No 305
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.98 E-value=0.47 Score=39.55 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=59.7
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..+||-.|+| .|..+..+|+... ..+++++|.+++..+.+++ .|...-+.....+..+.+....
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~-------- 241 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT-------- 241 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh--------
Confidence 456789888875 4556666777653 2369999999887776654 4432112221222222222221
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
....+|+|+ |..- -...++.+.+.+++||.+++-..
T Consensus 242 -~~~g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 242 -GGFGADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -CCCCCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence 123689875 4432 13456677889999998886543
No 306
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.98 E-value=0.44 Score=38.76 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=60.3
Q ss_pred HcCCCEEEEEc--cchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG--~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
..++.++|-.| .+.|..+..+|+.. +.++++++.+++..+.+++ .|.. . ++.....++...+...
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~-~--vi~~~~~~~~~~v~~~---- 207 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFD-A--VFNYKTVSLEEALKEA---- 207 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC-E--EEeCCCccHHHHHHHH----
Confidence 44567888887 46777888888876 5689999988877665554 4542 1 2222212222222211
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+|+ |..- ...+...++.|+++|.++.-
T Consensus 208 ---~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 208 ---APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ---CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence 134689876 4432 24567788999999988753
No 307
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=94.92 E-value=0.17 Score=40.31 Aligned_cols=110 Identities=12% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHH
Q 029536 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 8 ~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 87 (192)
..++..+........ +..-+|+=..+..+ +++.-+.+.+|+.|.-.+..++++.. ..++++++.|+.+-+..+
T Consensus 47 ~~yl~~v~~~n~~~~-l~~YPGSP~ia~~l---lR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~al 119 (245)
T PF04378_consen 47 QPYLDAVRALNPDGE-LRFYPGSPAIAARL---LREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKAL 119 (245)
T ss_dssp HHHHHHHHHHSSSSS---EEE-HHHHHHHH---S-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH
T ss_pred HHHHHHHHHhccCCC-cCcCCCCHHHHHHh---CCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhh
Confidence 445555544443322 44444444444433 44467999999999999888887764 358999999998876665
Q ss_pred HhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccC--CCeEEE
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG 132 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~--~gG~lv 132 (192)
..- ..+--+|+||++ +..|.+..+.+...++ +.|+++
T Consensus 120 lPP--------~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~ 161 (245)
T PF04378_consen 120 LPP--------PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYA 161 (245)
T ss_dssp -S---------TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEE
T ss_pred CCC--------CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEE
Confidence 422 456779999987 4556665555544444 556555
No 308
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.74 E-value=0.075 Score=43.07 Aligned_cols=70 Identities=14% Similarity=-0.025 Sum_probs=50.2
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+++|+.||.|+.+.-+..+. -..+.++|+++.+.+..+.|+... ++.+|..+....-. ...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~----------~~~ 62 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF----------IPD 62 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc----------CCC
Confidence 58999999999988877652 356899999999988777766321 55667655432210 346
Q ss_pred ccEEEEeCC
Q 029536 102 FDFVFVDAD 110 (192)
Q Consensus 102 ~D~v~id~~ 110 (192)
+|+++.+.+
T Consensus 63 ~D~l~~gpP 71 (275)
T cd00315 63 IDLLTGGFP 71 (275)
T ss_pred CCEEEeCCC
Confidence 999998864
No 309
>PLN02740 Alcohol dehydrogenase-like
Probab=94.65 E-value=0.64 Score=39.17 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=58.8
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC--CchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG--PALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~ 93 (192)
..+.++||-+|+| .|..+..+|+... ..+|+++|.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----- 265 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT----- 265 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----
Confidence 3456789998875 4556666777653 2369999999988877755 444221211110 1122222221
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
.+.+|+|+- ..- ....++.+...+++| |.+++-..
T Consensus 266 -----~~g~dvvid-~~G--~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 -----GGGVDYSFE-CAG--NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred -----CCCCCEEEE-CCC--ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 236898754 321 235567777888886 87766443
No 310
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.65 E-value=0.094 Score=41.82 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=38.0
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCC-------cEEEEEeCCchhHHHHHHHHHH
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDD-------GKILALDITKEHYEKGLPIIQK 66 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~-------~~v~~vD~~~~~~~~a~~~~~~ 66 (192)
+-+|+|+|+|.|..+..+++.+... .+++.||+||...+..++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4689999999999999999877532 5899999999999888888765
No 311
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.62 E-value=0.57 Score=38.74 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=59.0
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+..++|-.|+| .|..+..+|+... ...+++++.+++..+.+++ .|...-+.....+ .+.+....
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~--------- 224 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL--------- 224 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---------
Confidence 46788888875 4556666777653 2347899998887766543 3432111111112 12122221
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
....+|.+++|+.-. ...+..+.+.|++||.+++-..
T Consensus 225 ~~~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 225 RELRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred cCCCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 134688666775422 3467778899999999887544
No 312
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.57 E-value=0.66 Score=36.22 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=59.9
Q ss_pred cCCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..+||..|+|. |..+..+++.. +.++++++.+++..+.+++ .+...-+.....+....+. ..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~-------- 197 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT-------- 197 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh--------
Confidence 5567999999884 77777777765 4789999999876665543 2321111111111111111 11
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
....+|+++..... ...+..+.+.|+++|.++.-.
T Consensus 198 -~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 198 -GGGGADVVIDAVGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred -cCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence 14679998754322 145677788999999888543
No 313
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.53 E-value=0.24 Score=39.13 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCEEEEEccchhHHHHHHHHhCCC----C----cEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHh
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPD----D----GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQ 89 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~ 89 (192)
.++++|+....|.|+-.+.+.+-. . .++++||+.+= +.+ +.|.-+++|... .++.+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH
Confidence 468999999999999998876521 1 23999999752 122 457777777532 3333322
Q ss_pred hhhcccccCCCcccEEEEeCCCc--------Cc------HHHHHHHHhccCCCeEEEE
Q 029536 90 DVSSTKEKYHGTFDFVFVDADKD--------NY------VNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~~--------~~------~~~~~~~~~~L~~gG~lv~ 133 (192)
. +..++.|+|++|+.++ .| ...|......|+|||.++.
T Consensus 110 h------fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 110 H------FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred H------hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 2 1256899999998632 11 1233444578999999974
No 314
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.52 E-value=0.17 Score=41.05 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCCEEEEEccchhHHHHH-HHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFTGYSLLA-TALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~-la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.++.|+-+|=- -..++. ++..+| .++..+|++++.+....+..++.|+ .+++.+.-|....+++-.
T Consensus 152 ~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~--------- 218 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDL--------- 218 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHH---------
Confidence 45678888833 233333 333343 6899999999999999999999998 568888888766655532
Q ss_pred CCCcccEEEEeCCCc--CcHHHHHHHHhccCCC---eEEEE
Q 029536 98 YHGTFDFVFVDADKD--NYVNYHKRLIELVKVG---GVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~--~~~~~~~~~~~~L~~g---G~lv~ 133 (192)
..+||+++.|++.. ....++..-...|+.- |++-+
T Consensus 219 -~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 219 -KRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred -HhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 57999998888632 2344555555667665 45543
No 315
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=94.49 E-value=0.72 Score=36.84 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=73.7
Q ss_pred HHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHH
Q 029536 8 AQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQL 87 (192)
Q Consensus 8 ~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 87 (192)
..++..+-.. ++.--|..-+|+=..+..+++. .-++..+|..|+-....+++|. ...++++..+|....+...
T Consensus 78 ~~yl~~i~~l-N~~~~l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~ 150 (279)
T COG2961 78 EPYLDAVRQL-NPGGGLRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAH 150 (279)
T ss_pred HHHHHHHHHh-CCCCCcccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhh
Confidence 3344444333 3333477777777666666654 5689999999999999999886 3468999999987766554
Q ss_pred HhhhhcccccCCCcccEEEEeCC---CcCcHHHHHHHHhccC--CCeEEE
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDAD---KDNYVNYHKRLIELVK--VGGVIG 132 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~---~~~~~~~~~~~~~~L~--~gG~lv 132 (192)
.. ..++--+|+||++ +..|....+.+.+.++ ++|+..
T Consensus 151 LP--------P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~ya 192 (279)
T COG2961 151 LP--------PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYA 192 (279)
T ss_pred CC--------CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEE
Confidence 31 2556789999998 4556665555544443 455554
No 316
>PLN02827 Alcohol dehydrogenase-like
Probab=94.48 E-value=0.63 Score=39.24 Aligned_cols=102 Identities=19% Similarity=0.249 Sum_probs=58.1
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe--CCchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE--GPALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~ 93 (192)
..+..+||-.|+| .|..+..+|+... ...+++++.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----- 260 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----- 260 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----
Confidence 3456789888874 4555566777653 3468899988887766644 45421121111 01112222221
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
.+.+|+|+ |..- ....+..+.+.+++| |.+++-..
T Consensus 261 -----~~g~d~vi-d~~G--~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 -----GGGADYSF-ECVG--DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred -----CCCCCEEE-ECCC--ChHHHHHHHHhhccCCCEEEEECC
Confidence 23689876 4321 233466778889998 98876443
No 317
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.46 E-value=0.83 Score=37.53 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=56.8
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcE-EEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.+..+||-+|+| .|..+..+|+.. +.+ +++++.+++..+.+++ .|...-+.....+ .+.+....
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~------- 227 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT------- 227 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh-------
Confidence 456788888764 455566677765 345 9999998887766644 3432111111111 12222221
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
....+|+||- ..- ....+....+.|+++|.+++-.
T Consensus 228 --~~~~~d~vid-~~g--~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 228 --SGAGADVAIE-CSG--NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred --CCCCCCEEEE-CCC--CHHHHHHHHHHhhcCCEEEEEc
Confidence 1347998764 321 2334566778999999888643
No 318
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.45 E-value=0.71 Score=38.45 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=61.3
Q ss_pred HcCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 93 (192)
..+..+||-.|+ +.|..+..+|+.. +.++++++.+++..+.+++ ..|...-+..... +..+.+...
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~------ 224 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRY------ 224 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHH------
Confidence 345678988886 4788888888876 5689999988877665542 2344211221111 222222222
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
..+.+|+|| |..- ...+..+.+.|+++|.++.-.
T Consensus 225 ----~~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 225 ----FPEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ----CCCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence 134689876 4432 245778889999999888644
No 319
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.37 E-value=1.4 Score=32.92 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHhH--cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 4 SPDEAQFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 4 ~~~~~~~l~~l~~~--~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
+.++.+.|...+.. ....+|+-|||=+-+..+.- ......+++..|.+.+. ...+-. ...+.-....
T Consensus 8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~~-~F~fyD~~~p 76 (162)
T PF10237_consen 8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGGD-EFVFYDYNEP 76 (162)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCCc-ceEECCCCCh
Confidence 45566666655554 34578999998665544432 22236789999999754 333221 2334444333
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeCCC--cCcH-HHHHHHHhccCCCeEEE
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDADK--DNYV-NYHKRLIELVKVGGVIG 132 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~~~--~~~~-~~~~~~~~~L~~gG~lv 132 (192)
..++.. ..++||+|++|++- +... .....+.-++++++-|+
T Consensus 77 ~~~~~~----------l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii 120 (162)
T PF10237_consen 77 EELPEE----------LKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKII 120 (162)
T ss_pred hhhhhh----------cCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEE
Confidence 333322 16799999999983 2222 22344445557766555
No 320
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=94.20 E-value=0.092 Score=46.83 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh-----HHHHHHhhh
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP-----LLDQLIQDV 91 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~ 91 (192)
+.+...+||+||..|+|.-..+..+|.++-|+|||+-|-. ..+++.-++.|... .+....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l--- 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKIL--- 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHH---
Confidence 3466789999999999999999999988999999998732 12344444444321 122221
Q ss_pred hcccccCCCcccEEEEeCCCc--------C------cHHHHHHHHhccCCCeEEE
Q 029536 92 SSTKEKYHGTFDFVFVDADKD--------N------YVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~~~--------~------~~~~~~~~~~~L~~gG~lv 132 (192)
...+.|+|+-|+.+. . ....++.+...|+.||.++
T Consensus 107 ------~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 107 ------KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred ------HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 135669999987521 1 1345566678899999954
No 321
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.16 E-value=0.057 Score=42.59 Aligned_cols=80 Identities=14% Similarity=0.281 Sum_probs=54.7
Q ss_pred CEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHc-CCCCceEEEeC-CchhHHHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKA-GVAHKIDFREG-PALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~~ 97 (192)
-++||||+|.- -++=.-... -+-+.++.|+++..++.|+.++... ++...++++.. |....++.....
T Consensus 80 i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~------- 150 (292)
T COG3129 80 IRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK------- 150 (292)
T ss_pred eEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc-------
Confidence 47899998543 333221111 1468999999999999999998876 67667777554 343444444322
Q ss_pred CCCcccEEEEeCC
Q 029536 98 YHGTFDFVFVDAD 110 (192)
Q Consensus 98 ~~~~~D~v~id~~ 110 (192)
.+.||+..++++
T Consensus 151 -nE~yd~tlCNPP 162 (292)
T COG3129 151 -NERYDATLCNPP 162 (292)
T ss_pred -cceeeeEecCCC
Confidence 679999999887
No 322
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.12 E-value=0.85 Score=40.30 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=33.6
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHH
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 62 (192)
.++.+++-+|+| .|..+..+++.+ ++.++.+|.+++..+.+++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 356899999998 566777777776 4679999999988776665
No 323
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.04 E-value=1 Score=37.02 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=60.4
Q ss_pred HcCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 93 (192)
..++.++|-.|+ +.|..+..+|+.. +.+++++..+++..+.+++. .|...-+..... +..+.+...
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~------ 217 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY------ 217 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh------
Confidence 445678998885 5777888888875 56888888888766655542 344211211111 222222222
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+|+ |..- ...+..+++.|+++|.++.-
T Consensus 218 ----~~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 218 ----FPNGIDIYF-DNVG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred ----CCCCcEEEE-ECCC---HHHHHHHHHHhccCcEEEEe
Confidence 134689876 4432 24567788999999988753
No 324
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.03 E-value=1 Score=37.38 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=56.5
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeC---CchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDI---TKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
++.+||-+|+| .|..+..+|+.. +.++++++. +++..+.++ +.|.. .+..... +..+ .. .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~---~~~~-~~-~---- 235 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKT---PVAE-VK-L---- 235 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCcc---chhh-hh-h----
Confidence 56789988876 466677777775 458999987 555555444 34442 1211111 1111 11 1
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
...+|+||--... ...+....+.|++||.+++-..
T Consensus 236 ----~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 236 ----VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ----cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence 3578987643321 3357778899999998886544
No 325
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.01 E-value=0.98 Score=38.86 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=59.6
Q ss_pred HHHHHhH----cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHH
Q 029536 11 FSMLLKL----INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLD 85 (192)
Q Consensus 11 l~~l~~~----~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 85 (192)
+..+.+. ...++|+-+|+| .|......++.+ +.+|+.+|.++...+.|++ .|. +.. +. +
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~----~ 252 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TM----E 252 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cH----H
Confidence 4444443 357899999998 455555566665 4689999999987776664 333 111 11 1
Q ss_pred HHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHH-HhccCCCeEEEEeC
Q 029536 86 QLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRL-IELVKVGGVIGYDN 135 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~-~~~L~~gG~lv~~d 135 (192)
.. -...|+|+.-.. ....+... .+.+++||+++.-.
T Consensus 253 e~-----------v~~aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 253 EA-----------VKEGDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred HH-----------HcCCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeC
Confidence 21 134698875332 24455554 78999999997643
No 326
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=94.01 E-value=0.16 Score=37.02 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=28.1
Q ss_pred EEccchh--HHHHHHH-HhCCCCcEEEEEeCCchhHHHHHHH--HHHc
Q 029536 25 EIGVFTG--YSLLATA-LAIPDDGKILALDITKEHYEKGLPI--IQKA 67 (192)
Q Consensus 25 eiG~g~G--~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~ 67 (192)
|||+..| .++..++ +...+.++++++|++|...+..+++ +.-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 6666554 2344478999999999999998888 5544
No 327
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.00 E-value=0.78 Score=37.72 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred CEEEEEcc--chhHHHHHHHHhCCCCc-EEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 21 KNTMEIGV--FTGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~--g~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+||-.|+ +.|..+..+|+.. +. ++++++.+++..+.+++. .|...-+.....+..+.+..+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---------- 220 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---------- 220 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH----------
Confidence 68888875 5788888888876 45 799999888766555442 454221111112222222222
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+|+ |..-. ..+..+++.|+++|.++.
T Consensus 221 ~~~gvd~vi-d~~g~---~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 221 CPEGVDVYF-DNVGG---EISDTVISQMNENSHIIL 252 (345)
T ss_pred CCCCceEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence 134689876 54322 125677889999998875
No 328
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.00 E-value=1.5 Score=35.13 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=58.4
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+.+++|-+|+| .|..+..+|+... ..+++++|.+++..+.+++ .|...-+. ..+..+....+.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~--------- 183 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ--------- 183 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh---------
Confidence 45788888875 5556666777653 2358899998887776655 34321111 111111121111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
....+|+++- ..- ....++.+.+.|+++|.++.-...
T Consensus 184 ~~~g~d~vid-~~G--~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 184 NGRGVDVALE-FSG--ATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCCCCCEEEE-CCC--ChHHHHHHHHHhcCCCEEEEeccC
Confidence 1346898754 321 134577788999999998865543
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.97 E-value=1.3 Score=36.12 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=59.7
Q ss_pred HcCCCEEEEEc--cchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhc
Q 029536 17 LINAKNTMEIG--VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSS 93 (192)
Q Consensus 17 ~~~~~~ileiG--~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 93 (192)
..+..+||-.| .+.|..+..+|+.. +.++++++.+++..+.+++ .|...-+..... +..+.....
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~------ 203 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA------ 203 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh------
Confidence 44567898888 35788888888875 5689999988877665543 454211111111 111222221
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+.+|+|+ |..-. ..++..++.|+++|.++.-
T Consensus 204 ----~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 ----SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred ----CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEe
Confidence 134689876 54321 3457788999999998864
No 330
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.85 E-value=0.99 Score=37.72 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=64.5
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~ 94 (192)
..+..++.-+||| .|.+++.-|.... ..+++++|++++.++.|++ .|..+-+.-... |.-+.+..+.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T------ 251 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT------ 251 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc------
Confidence 3456788888987 5666666666544 7899999999999998887 343222222111 2333333331
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++..|.+|--. ...+.+++++...+++|..++-.+
T Consensus 252 ----~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 252 ----DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred ----CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEec
Confidence 44778875422 234477788888888997776444
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.74 E-value=0.72 Score=38.14 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 20 ~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+.+|.-||.| .|..+.-+|..+ ++.|+.+|.|.+.++.....+. .+++.+-.....+-+..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v----------- 229 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV----------- 229 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh-----------
Confidence 3466677766 677788888766 6899999999988876666552 46777777766554443
Q ss_pred CCcccEEEEe---CCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVD---ADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id---~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.|+++-- +......-..+...+.||||++|+=
T Consensus 230 -~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 230 -KKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred -hhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 367877532 1133344456777889999999864
No 332
>PRK09028 cystathionine beta-lyase; Provisional
Probab=93.73 E-value=3.6 Score=35.21 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc-hhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
|....|=+.++.......++-..+|+......+...+.++.+|+..+..- .........+...|. ++.++..+..+.
T Consensus 61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~ 138 (394)
T PRK09028 61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG 138 (394)
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence 33444555566656666777777777665555544456577888887653 333344444555444 455544333233
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccCCc
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGG 140 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~~g 140 (192)
++... ..+-.+|++..+ +......++.+.+..+. |.++++|+++..+
T Consensus 139 l~~~l----------~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 139 IRELI----------RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred HHHhc----------CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 33321 334678888765 33334556666666665 4567778886433
No 333
>PRK08114 cystathionine beta-lyase; Provisional
Probab=93.69 E-value=4.1 Score=34.90 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCC-chhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|=+.++........+-..+|++.....+...+.++.+|++.+.. .......++.+++.|. +++++.....+
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~ 138 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGA 138 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence 56666666777777778899999998888776665556656777765433 2444555566677665 46665432222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhcc---CCCeEEEEeCccCCc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELV---KVGGVIGYDNTLWGG 140 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L---~~gG~lv~~d~~~~g 140 (192)
.++... ..+-.+|++... +......++.+.+.. .+|-.+++||+...+
T Consensus 139 ~l~~~l----------~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 139 DIAKLI----------QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred HHHHhc----------CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 233221 334578998875 221122233333333 345688889886433
No 334
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.59 E-value=0.66 Score=37.78 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=49.8
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+++|+-||.|+.++-+..+. -..+.++|+++.+.+.-+.|+. ....+|..+...... +..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----------~~~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----------PKD 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----------HHT
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----------ccc
Confidence 68999999999999888763 3579999999998888888773 677888877644321 115
Q ss_pred ccEEEEeCC
Q 029536 102 FDFVFVDAD 110 (192)
Q Consensus 102 ~D~v~id~~ 110 (192)
+|+++...+
T Consensus 62 ~D~l~ggpP 70 (335)
T PF00145_consen 62 VDLLIGGPP 70 (335)
T ss_dssp -SEEEEE--
T ss_pred ceEEEeccC
Confidence 899887654
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.49 E-value=1.2 Score=36.87 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred cCCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..+|+-+|+|. |..+..+|+.. +.++++++.+++..+.+++ .|...-+.....+..++.....+. +
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~---t-- 233 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF---A-- 233 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh---c--
Confidence 3467899998863 66777778776 4579999999988776654 343211221111112222222110 0
Q ss_pred cCCCcccE---EEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 97 KYHGTFDF---VFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 97 ~~~~~~D~---v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
....+|. +++|+.- ....++.+.+.|++||.+++-...
T Consensus 234 -~~~g~d~~~d~v~d~~g--~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 234 -KARGLRSTGWKIFECSG--SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred -ccCCCCCCcCEEEECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence 0124541 3455432 234566778899999998875543
No 336
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=93.45 E-value=2.9 Score=35.80 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCC-chhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.....+.++-+++|+......+...+.++.+|+..+.. ........+.++..|. .+.++..+..+
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 146 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS 146 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 45667777888888888899998988877666554445556677766532 2333344445555554 45565443223
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+-.+|++..+ +......++.+.++.+. |-++++|+++.
T Consensus 147 ~l~~ai----------~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 147 QWEEAL----------SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHhc----------CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 333321 234578887654 22222224444444444 45677787753
No 337
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.41 E-value=1.5 Score=37.19 Aligned_cols=104 Identities=18% Similarity=0.108 Sum_probs=58.2
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
++.+++-+|+| .|..+...+..+ +.+|+.+|.+++..+.+...+ +. .+.....+. +.+.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~---------- 227 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA---------- 227 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH----------
Confidence 56789999987 566666666665 458999999987665544322 11 122222222 223332
Q ss_pred CCCcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEEEeCccCCcc
Q 029536 98 YHGTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIGYDNTLWGGS 141 (192)
Q Consensus 98 ~~~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~ 141 (192)
-..+|+|+.... .....-+-+...+.++++++|+---+-.+|.
T Consensus 228 -l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 228 -VKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred -HccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 246799886542 1111112245557789998876533333333
No 338
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.39 E-value=1.5 Score=36.69 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=58.4
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCC--chhHHHHHHhhhhcc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGP--ALPLLDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~~~ 94 (192)
....+||-.|+| .|..+..+|+... ..+|+++|.+++..+.+++ .|...-+.....+ ..+.+.++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~------ 252 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT------ 252 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh------
Confidence 446788888875 4556677777753 2379999999988777654 3442212211101 111122221
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
.+.+|+++ |..- ....+..+++.++++ |.+++-..
T Consensus 253 ----~~g~d~vi-d~~G--~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 ----DGGVDYSF-ECIG--NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ----CCCCCEEE-ECCC--CHHHHHHHHHHhhcCCCeEEEEec
Confidence 23689875 4321 134567778889886 87765443
No 339
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.36 E-value=0.11 Score=42.05 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=60.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCce-EEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKI-DFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.....++|+|||.|-.+. ..+...+++.|++...+..+++ ... .....|+... +
T Consensus 44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~--------~~~~~~~~ad~l~~------------p 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR--------SGGDNVCRADALKL------------P 98 (293)
T ss_pred CCcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc--------CCCceeehhhhhcC------------C
Confidence 335678999999996322 1135689999999877766654 122 4555666543 2
Q ss_pred cCCCcccEEEEeCC------CcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDAD------KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~------~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+||.++.-+. .......++...+.|+|||-..+
T Consensus 99 ~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 99 FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 23678998865443 23345688889999999996443
No 340
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.32 E-value=0.45 Score=35.06 Aligned_cols=94 Identities=17% Similarity=0.077 Sum_probs=56.0
Q ss_pred EEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHH------cCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK------AGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
|.-+|+|.++.++...-... +.+|+....+++.++..++.-.. ..+..++.+ ..|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~------------ 67 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL------------ 67 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH------------
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh------------
Confidence 56678876665554332222 46899999998777655543221 111123433 33333222
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...|+|++-.+.....++++.+.+.++++-.+++
T Consensus 68 ---~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 68 ---EDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp ---TT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ---CcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 3459999988777778899999999988887775
No 341
>PRK11524 putative methyltransferase; Provisional
Probab=93.28 E-value=0.35 Score=39.30 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=43.9
Q ss_pred HHHHHHHHhHc--CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHH
Q 029536 8 AQFFSMLLKLI--NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQK 66 (192)
Q Consensus 8 ~~~l~~l~~~~--~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 66 (192)
..|++.++... ++..|||--+|+|..+....+ + +=+.+|+|++++..+.|++.+..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45777777654 578999999999987765444 3 45799999999999999998864
No 342
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.17 E-value=1.7 Score=36.14 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred HcCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
....++||-.|. |.|..++.||+++. .+++++-.+++..+ .+++.|-+.-+.+...|..+...++.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t------ 207 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT------ 207 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc------
Confidence 445689999984 46667778888864 36666666665444 34445554445555555544444432
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+|+-.. -.+.+......|+++|.++.-
T Consensus 208 ---~g~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 208 ---GGKGVDVVLDTV----GGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred ---CCCCceEEEECC----CHHHHHHHHHHhccCCEEEEE
Confidence 123699986532 234566677888999987763
No 343
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.13 E-value=0.45 Score=31.60 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=52.0
Q ss_pred EEEEccchhHHHHHHHHhCC-CC---cEEEEE-eCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 23 TMEIGVFTGYSLLATALAIP-DD---GKILAL-DITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~-~~---~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
|-=||+ |..+..+++.+- .+ .+++.+ +.+++..+...+.+ + +.+...+..+..+
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~------------ 60 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ------------ 60 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH------------
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc------------
Confidence 344555 555555555432 12 578844 99988776554432 2 4444434434432
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
.-|+||+...+....+.++.+ ..+.++.+++
T Consensus 61 ---~advvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 61 ---EADVVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp ---HTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred ---cCCEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 459999988888889988888 7777777765
No 344
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.05 E-value=1.1 Score=36.71 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCC--CceEEEeCCch--hHHHHHHhhhhccc
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVA--HKIDFREGPAL--PLLDQLIQDVSSTK 95 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~--~~~~~~~~~~~~~~ 95 (192)
...|+.+|| |.-|+..--..+...+++=+|. |+.++.=++.+...+.. ..++++..|.. ++.+.+.+.
T Consensus 93 ~~qvViLga--GLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~----- 164 (297)
T COG3315 93 IRQVVILGA--GLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAA----- 164 (297)
T ss_pred ccEEEEecc--ccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhc-----
Confidence 678999999 4444443222233466777777 67777777777776632 36888888876 344555422
Q ss_pred ccCCCcccEEEEeCC-----CcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 96 EKYHGTFDFVFVDAD-----KDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
++....--++++-+. ++...++|..+..+..||..++++-.
T Consensus 165 G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 165 GFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 333444445554443 44557788999889889888877643
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.05 E-value=1.6 Score=36.04 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=60.5
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+.+++|-.|+| .|..+..+|+... ...+++++.+++..+.+++ .|...-+.....+..+.+..+.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~------- 231 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT------- 231 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh-------
Confidence 3456788888765 5666777777764 3469999999877666654 4442112211122222222221
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
....+|+++-.... ...+..+++.|+++|.++.-..
T Consensus 232 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 232 --GGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred --CCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 13468987642221 3467788899999998886443
No 346
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.01 E-value=2.1 Score=35.81 Aligned_cols=104 Identities=17% Similarity=0.288 Sum_probs=58.9
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+..+||-+|+| .|..+..+|+... ..++++++.+++..+.+++ .|...-+.....+ .++...+...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~~~~~~v~~~----- 252 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHD-KPIQQVLVEM----- 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccc-hHHHHHHHHH-----
Confidence 3456788888864 5556666777753 2379999999988776654 4442111111111 1122222111
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
..+.+|+|+ |..- -...+..+.+.++++ |.++.-..
T Consensus 253 --~~~g~d~vi-d~~g--~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 --TDGGVDYTF-ECIG--NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred --hCCCCcEEE-ECCC--ChHHHHHHHHhhccCCCeEEEEcc
Confidence 134689876 4321 134567778899887 87776443
No 347
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.96 E-value=0.75 Score=37.54 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=54.1
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+.+++|-+|+| .|..+..+|+... ...++++|.+++.++.+.+. . ++ +..+. .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~---------- 197 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P---------- 197 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c----------
Confidence 45688888875 6667777887764 34577888887766555431 1 11 11110 1
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
...+|+|| |+.- ....++.+.+.|+++|.+++-.
T Consensus 198 -~~g~Dvvi-d~~G--~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 198 -RRDYRAIY-DASG--DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -CCCCCEEE-ECCC--CHHHHHHHHHhhhcCcEEEEEe
Confidence 34689875 4421 2345678889999999988644
No 348
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.87 E-value=2.2 Score=32.80 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=46.2
Q ss_pred hHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEE
Q 029536 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDF 75 (192)
Q Consensus 16 ~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~ 75 (192)
...+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+.+.+.+.+..-+++.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 34567789999997 3443333333322 47899999872 334455556665543334444
Q ss_pred EeCCchh-HHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 76 REGPALP-LLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 76 ~~~d~~~-~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
+...... .+..+ -..+|+|+.-.+
T Consensus 96 ~~~~i~~~~~~~~-----------~~~~D~Vi~~~d 120 (202)
T TIGR02356 96 LKERVTAENLELL-----------INNVDLVLDCTD 120 (202)
T ss_pred ehhcCCHHHHHHH-----------HhCCCEEEECCC
Confidence 4443322 22222 347899876544
No 349
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.84 E-value=4.8 Score=34.60 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=58.5
Q ss_pred CEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh--hhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD--VSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~~~ 97 (192)
++|.-||.| +.+..+|..+. .+.+|+++|.+++.++..+. +. ..+...+..+.+.+.... +..+..
T Consensus 4 ~kI~VIGlG--~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~- 72 (415)
T PRK11064 4 ETISVIGLG--YIGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTT- 72 (415)
T ss_pred cEEEEECcc--hhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeecc-
Confidence 567778875 44444444332 25789999999987764321 21 222222222222211100 000000
Q ss_pred CCCcccEEEEeCCC----------cCcHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 98 YHGTFDFVFVDADK----------DNYVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 98 ~~~~~D~v~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
....|+||+.-+. .......+.+.+.+++|.+++..-+...|
T Consensus 73 -~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg 124 (415)
T PRK11064 73 -PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG 124 (415)
T ss_pred -cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 1256999887653 23345567778899999988877666554
No 350
>PRK13699 putative methylase; Provisional
Probab=92.82 E-value=0.47 Score=37.35 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHHHHHhH--cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHc
Q 029536 9 QFFSMLLKL--INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA 67 (192)
Q Consensus 9 ~~l~~l~~~--~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 67 (192)
.+++.++.. .++..|||--||+|..+....+. +-+.+++|++++..+.+.+.++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 456666543 45679999999999877765543 457899999999999998887653
No 351
>PRK07671 cystathionine beta-lyase; Provisional
Probab=92.81 E-value=3.7 Score=34.74 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++........+-+++|++.....++ .+.++.+|+..+..-. ......+.+...|. ++.++..+..+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 125 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE 125 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 46667777778777766677778888776554443 4455677887775432 33333444444454 45555433222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+-.+|++..+ +......++.+.++.+. |..+++|+++.
T Consensus 126 ~l~~ai----------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 126 EVEEAI----------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred HHHHhc----------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 232221 334578887654 21112223344443433 56777787753
No 352
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.81 E-value=2.2 Score=35.68 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=48.8
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCceE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKID 74 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~ 74 (192)
..+..+|+-|||| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+..-+++
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 3456789999997 3433333222222 46899999874 23455666777665545566
Q ss_pred EEeCCch-hHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 75 FREGPAL-PLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 75 ~~~~d~~-~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.+..+.. +.+..+ -..+|+|+.-.+
T Consensus 100 ~~~~~~~~~~~~~~-----------~~~~DlVid~~D 125 (338)
T PRK12475 100 PVVTDVTVEELEEL-----------VKEVDLIIDATD 125 (338)
T ss_pred EEeccCCHHHHHHH-----------hcCCCEEEEcCC
Confidence 6666643 223333 346898876554
No 353
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.58 E-value=1.4 Score=37.82 Aligned_cols=97 Identities=14% Similarity=0.039 Sum_probs=59.2
Q ss_pred CCEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
.++++-+|+ |..+..+++.+.. +..++.+|.+++..+..++.. ..+.++.+|+.+. ..+... .
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~-------~ 294 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE-------G 294 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc-------C
Confidence 578999877 7777777766642 578999999998877655532 3467888988543 222111 1
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
-..+|.|++-.+.....-....+.+.+.+.-+++
T Consensus 295 ~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 295 IDEADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 4578988876543322223333345555554444
No 354
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=92.58 E-value=5.8 Score=33.62 Aligned_cols=126 Identities=14% Similarity=0.070 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|=+.++.......++-..+|++.....+...+.++.+|+..+..-. ....+...++..+. +++++..+..+
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e 126 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGE 126 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHH
Confidence 3545555556666666778887777777666555544555677877765532 22233334444444 34444222212
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccCCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWGGS 141 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~~g~ 141 (192)
.++... ..+..+|++..+ +......++.+.++.+. |.++++|++...+.
T Consensus 127 ~l~~~i----------~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~ 178 (377)
T TIGR01324 127 DIATLI----------QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL 178 (377)
T ss_pred HHHHhc----------CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 233221 345678888765 33344556666655555 55777888865443
No 355
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.51 E-value=2.4 Score=34.98 Aligned_cols=91 Identities=15% Similarity=0.044 Sum_probs=56.2
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..++|-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .|...-+. ..+.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~------------- 219 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT------------- 219 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc-------------
Confidence 456789988864 455556677765 4679999999887766555 45421111 0000
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
..+.+|+++..... ...+....+.|++||.+++-..
T Consensus 220 -~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 220 -PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 02357876542211 2467788899999999887544
No 356
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=92.46 E-value=2.5 Score=35.24 Aligned_cols=104 Identities=16% Similarity=0.263 Sum_probs=57.7
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+..+||-.|+| .|..+..+|+... ..++++++.+++..+.+++ .|...-+..... ...+.+.+...
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~-~~~~~~~v~~~----- 253 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDH-DKPVQEVIAEM----- 253 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEccccc-chhHHHHHHHH-----
Confidence 3456788888765 4555566777653 2479999999887776644 443211211110 11121222111
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
..+.+|+++ |..- ....+..+.+.+++| |.+++-..
T Consensus 254 --~~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 254 --TGGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred --hCCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence 133689765 4421 134566677888996 88876444
No 357
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=92.35 E-value=5 Score=34.38 Aligned_cols=123 Identities=18% Similarity=0.132 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeC-CchhHHHHHHHHHHcCCCCceEEEeCCc-h
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGPA-L 81 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~ 81 (192)
+|....|=..++........+-.-||.+..+..+...+.++.+++..+- -..-.....+.+.+.|+ .++++.... .
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~d~~~~~ 139 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFVDPGDDE 139 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEECCCChH
Confidence 4455555566667777888999999999988877777765667766654 33445566666666554 355443322 2
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCC-eEEEEeCccC
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLW 138 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~d~~~ 138 (192)
.....+. ....++||+..+ +......+..+.++-+.. -++++||++.
T Consensus 140 ~~~~~~~----------~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 140 ALEAAIK----------EPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred HHHHHhc----------ccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 3333331 247899999876 222233344454554544 5777888873
No 358
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=92.27 E-value=3.4 Score=34.52 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=57.5
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc--hhHHHHHHhhhhcc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA--LPLLDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~~~~~ 94 (192)
.+..++|-+|+| .|..+..+|+... ..++++++.+++..+.+++ .+...-+.....+. .+.+..+.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~------ 251 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT------ 251 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh------
Confidence 456788888874 4556666777753 2379999999887776654 34421122111111 12222221
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeCc
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDNT 136 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d~ 136 (192)
...+|+|+ |..- ....+..+++.++++ |.++.-..
T Consensus 252 ----~~g~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 ----GGGVDYSF-ECTG--NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ----CCCCCEEE-ECCC--ChHHHHHHHHhcccCCCEEEEEcC
Confidence 34689876 3321 134567788889885 87766433
No 359
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=92.25 E-value=5.3 Score=33.96 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.......++-.++|+......+...+.++.+|+..+..-. ............+. .+.++.....+
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 128 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQ 128 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHH
Confidence 4566777788888777777777777776666655545555677877776543 23333333332222 34444321122
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccCC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLWG 139 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~~ 139 (192)
.+.... ..+-++|++..+ +....-.++.+.+..+. |.++++|+++..
T Consensus 129 ~l~~~l----------~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 129 ALRAAL----------AEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred HHHHhc----------ccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 222221 235688888754 21111112333333333 667888888643
No 360
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.23 E-value=0.97 Score=37.01 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=50.1
Q ss_pred CEEEEEccchhHHHHHHHHhCCCC---cEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDD---GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+|.-||+| ..+..++..+... .+|+++|.+++..+.+++ .+... . ...+. ...
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~----~~~---------- 63 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSA----AEA---------- 63 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCH----HHH----------
Confidence 578888875 3333333333212 379999999887665543 33211 1 11111 111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
-...|+|++-.+.....++++.+.+.+++|.+++
T Consensus 64 -~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 -VKGADLVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 2356888887665555566677777788887654
No 361
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.14 E-value=1 Score=37.30 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.4
Q ss_pred CcccEEEEeCC---CcCcHHHHHHHHhccCCCeEEE
Q 029536 100 GTFDFVFVDAD---KDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 100 ~~~D~v~id~~---~~~~~~~~~~~~~~L~~gG~lv 132 (192)
+.||+|+.... ..+..++++.+.+.|+|||+-+
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 46898854322 4567889999999999999776
No 362
>PRK06234 methionine gamma-lyase; Provisional
Probab=92.11 E-value=5.2 Score=34.12 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.......++-+++|++.....+...++++.+|+..+..-. ........++..|. ++.++..+..+
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e 140 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE 140 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence 4556677777887777777888888777665555444555667776654221 22222333444443 44444432222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccC---CCeEEEEeCccCC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK---VGGVIGYDNTLWG 139 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~---~gG~lv~~d~~~~ 139 (192)
.+.... ..+-.+|++..+ +......++.+.++.+ +|-++++|+++..
T Consensus 141 ~l~~~i----------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~ 192 (400)
T PRK06234 141 EVRNAL----------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCT 192 (400)
T ss_pred HHHHHh----------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCc
Confidence 222221 234578887654 2211112333333333 3778888888643
No 363
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.73 E-value=1.4 Score=33.01 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=57.5
Q ss_pred EccchhHHHHHHHHhCCCCcEEEEEeCC--chhHHH---HHHHHHHcCCCCceEEEe-CCchhHHHHHHhhhhcccccCC
Q 029536 26 IGVFTGYSLLATALAIPDDGKILALDIT--KEHYEK---GLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 26 iG~g~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~---a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
+|=|.=..++.|++.......++++-.+ .+..++ +.++++...- ..+++.. -|+....+... ...
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~--------~~~ 73 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR--------LKN 73 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc--------ccC
Confidence 4444555666777776534455555444 333332 3355555422 3344433 35544433321 126
Q ss_pred CcccEEEEeCCCcC----------------cHHHHHHHHhccCCCeEEEEe
Q 029536 100 GTFDFVFVDADKDN----------------YVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 100 ~~~D~v~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.+||.|+...+... ...+|..+.++|+++|.|.+.
T Consensus 74 ~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 74 QRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 78999999876322 135788889999999988763
No 364
>PRK07582 cystathionine gamma-lyase; Validated
Probab=91.63 E-value=5 Score=33.78 Aligned_cols=118 Identities=11% Similarity=0.026 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchh-HHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|...++-+.++... +..++-+++|+......+...+.++.+|+..+..-.. ...++..+...|. ++.++..+..
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~- 125 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM- 125 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence 456677777787777 6677778888876665555555556778887765433 3344444555444 3444443321
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccC-CCeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~d~~ 137 (192)
.... ....++|++..+ +......++.+.+..+ .|.++++|+++
T Consensus 126 -~~~~-----------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 126 -AEAA-----------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred -HHHh-----------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 1111 235688888654 2112223444444444 46678888875
No 365
>PLN02494 adenosylhomocysteinase
Probab=91.63 E-value=3.3 Score=36.30 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=56.6
Q ss_pred HHHHHHhH----cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHH
Q 029536 10 FFSMLLKL----INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLL 84 (192)
Q Consensus 10 ~l~~l~~~----~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 84 (192)
++..+.+. ...++++-+|+| .|......++.+ +.+|+.+|.++.....+.. .+. .+. +..+.
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa- 306 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDV- 306 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHH-
Confidence 34555554 346899999987 444555555555 4689999999865443322 222 121 22221
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
+ ...|+|+...... .-+....++.+|+|++|+--
T Consensus 307 --l------------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 307 --V------------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred --H------------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEEc
Confidence 1 2469888733222 12236677899999999853
No 366
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.55 E-value=1.6 Score=32.73 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=50.2
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
...++|.-+|+| .|.....+++.+ +.+|+++|.++..... .... .+ ...+..+.++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~----~~~~----~~--~~~~l~ell~----------- 90 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEG----ADEF----GV--EYVSLDELLA----------- 90 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHH----HHHT----TE--EESSHHHHHH-----------
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhh----cccc----cc--eeeehhhhcc-----------
Confidence 356799999985 444444455555 5799999999875541 1111 22 2234434433
Q ss_pred cCCCcccEEEEeCCC--cCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDADK--DNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~~~--~~~~~~~~~~~~~L~~gG~lv 132 (192)
..|+|++..+. +...-+=+..+..+|+|.++|
T Consensus 91 ----~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 91 ----QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp ----H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred ----hhhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence 35999887762 111112234567889888776
No 367
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.52 E-value=4 Score=35.83 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred EEEEEccchhHHHHHHHHhC-CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhh-h--hccccc
Q 029536 22 NTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQD-V--SSTKEK 97 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~--~~~~~~ 97 (192)
+|.-||+|..+.....+-+. ..+.+|+++|++++.++..++-. ..+......+++.+.... + +++...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~--------~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ--------LPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC--------CccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 57778886555444322221 11367999999999887655321 111111111221111000 0 000000
Q ss_pred CCCcccEEEEeCC--C---------c----CcHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 98 YHGTFDFVFVDAD--K---------D----NYVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 98 ~~~~~D~v~id~~--~---------~----~~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
.-...|++|+.-+ . . ......+.+.+.|++|-++++.-+.+.|
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 0134588877432 1 1 2345666777889999898888777665
No 368
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.51 E-value=2.8 Score=35.68 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc-eEEEeCCchhHH
Q 029536 6 DEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLL 84 (192)
Q Consensus 6 ~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~ 84 (192)
...-+|..+.......+|+-++=..|..+++++..-+ +.+--+--.....++|++..+++.. +++.....
T Consensus 31 ade~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~---- 101 (378)
T PRK15001 31 ADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDSTA---- 101 (378)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeecccc----
Confidence 3445666665543223799999999999999995432 2331122233455678888887543 55553322
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCc--CcHHHHHHHHhccCCCeEEEEeCc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~--~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.+ .+.+|+|++-.++. .....+..+.+.|.+|+.|++-..
T Consensus 102 -~~-----------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 102 -DY-----------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred -cc-----------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 11 45699999988754 344566778899999999876443
No 369
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.50 E-value=0.18 Score=43.12 Aligned_cols=64 Identities=17% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc-eEEEeCCchhHHH
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-IDFREGPALPLLD 85 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~ 85 (192)
.+..|.|+.||.|-.++.++.. +++|++-|.+|++++..+.+++...+.+. ++.+..|+.+++.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 4567899999999988877754 69999999999999999999988888766 9999999988873
No 370
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=91.43 E-value=5.2 Score=33.98 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
+|....|=+.++.......++-.++|+......+...+.++.+|+..+..-......-+.+...+. ++.+...|..++
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l 129 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI 129 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence 344556666677777777888888777666555554555566777665543322222122333333 344444443333
Q ss_pred HHHHHhhhhcccccCCC-cccEEEEeCC--CcCcHHHHHHHHhccC-CCeEEEEeCcc
Q 029536 84 LDQLIQDVSSTKEKYHG-TFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTL 137 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~-~~D~v~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~d~~ 137 (192)
.+.+ .. +..+|++... +....-.++.+.++.+ .|..+++|++.
T Consensus 130 ~~~i-----------~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 130 IEAI-----------KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred HHhc-----------CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence 2222 22 5678888654 2111111334444443 35577778875
No 371
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.41 E-value=1.6 Score=36.13 Aligned_cols=68 Identities=13% Similarity=-0.055 Sum_probs=46.4
Q ss_pred EEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcc
Q 029536 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTF 102 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
++|+.||.|+.+.-+-.+. -..+.++|+++.+.+.-+.|+. . .++.+|..++...- -..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~-----------~~~~ 60 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSD-----------IPDF 60 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhh-----------CCCc
Confidence 5899999999998887652 2456789999988887777652 1 34567766553221 2357
Q ss_pred cEEEEeCC
Q 029536 103 DFVFVDAD 110 (192)
Q Consensus 103 D~v~id~~ 110 (192)
|+++...+
T Consensus 61 dvl~gg~P 68 (315)
T TIGR00675 61 DILLGGFP 68 (315)
T ss_pred CEEEecCC
Confidence 98876643
No 372
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.41 E-value=1.7 Score=35.35 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=50.6
Q ss_pred CEEEEEccchhHHHHHHHHhCCC---CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPD---DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+|+-+|. |..+.++++.+.. ...+++.|.+....+.+.+ .++. .-..+. .....
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~----d~~~~~--~~~~~---------- 61 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVI----DELTVA--GLAEA---------- 61 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcc----cccccc--hhhhh----------
Confidence 46777775 5555555555432 3456777777666554443 2221 111111 10111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
....|+|++..+.....++++.+.+.|++|.++.
T Consensus 62 -~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 62 -AAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -cccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 3457888888777777777888877788777664
No 373
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.40 E-value=3.9 Score=32.01 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=47.2
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCC-------------------chhHHHHHHHHHHcCCCCceEEE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFR 76 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~ 76 (192)
..+..+|+-+||| .|...+..+.... -++++.+|.+ ....+.+++.+++.+..-+++.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 4456789999996 3443333332323 4788888654 33455666777766544456655
Q ss_pred eCCch-hHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 77 EGPAL-PLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 77 ~~d~~-~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
..... +....+ -..+|+|+...+
T Consensus 97 ~~~i~~~~~~~~-----------~~~~DvVi~~~d 120 (228)
T cd00757 97 NERLDAENAEEL-----------IAGYDLVLDCTD 120 (228)
T ss_pred cceeCHHHHHHH-----------HhCCCEEEEcCC
Confidence 55432 222222 246899887655
No 374
>PRK05939 hypothetical protein; Provisional
Probab=91.36 E-value=8.4 Score=32.90 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|=+.++.....+..+-+.+|+......+...+.++.+|+..+..-. ..... ..+...|. .+.++..+..+
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e 122 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ 122 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence 4666667777888888888888888776666555444555677877665421 11222 23444554 45555433222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~ 137 (192)
.+.... ..+-.+|++... +......++.+.+..+. |.++++|++.
T Consensus 123 ~l~~~l----------~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 123 NVAAAI----------RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHhC----------CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 233321 345568887654 22233445555555554 4466677765
No 375
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.35 E-value=0.39 Score=42.30 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCEEEEEccchhHHHHHHHHh---CCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 20 AKNTMEIGVFTGYSLLATALA---IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.-.|+-+|.|-|=......++ ..+.-++++||-+|.++--.+. ..-...+.+|+++.+|..++-+.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap---------- 436 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP---------- 436 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc----------
Confidence 346788899999776664443 2334689999999988754443 33334457899999998776431
Q ss_pred cCCCcccEEEEe-----CCCcCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVD-----ADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id-----~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
..+.|+++.- ++.+--.+-++.+.+.|||+|+-|
T Consensus 437 --~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 437 --REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred --hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 2578887532 223445778889999999999887
No 376
>PRK05967 cystathionine beta-lyase; Provisional
Probab=91.25 E-value=8.7 Score=32.88 Aligned_cols=122 Identities=11% Similarity=0.086 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchh-HHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEH-YEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....+=+.++........+-+.+|++.....+...+.++.+|+..+..-.. ....++.++..|. +++++..+..+
T Consensus 63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e 140 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA 140 (395)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence 34444455555555556667777888777766665556667788887665433 2234455666665 56666443323
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCC-eEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~d~~ 137 (192)
.+.... ..+-.+|++..+ +......++.+.+..+.. .++++|+++
T Consensus 141 ~l~~al----------~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 141 GIAKLM----------RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHhc----------CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 333321 344678998865 333455566666666654 467777775
No 377
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.13 E-value=4.8 Score=33.19 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=57.9
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCc-EEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDG-KILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.++.++|-.|+| .|..+..+|+.. +. ++++++.+++..+.+++ .+...-+.....+..+.+.+..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~------- 237 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT------- 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh-------
Confidence 345678877753 455666677765 44 78999988887776654 3432112222222222222221
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
....+|+|+-... ....++.+++.|+++|.++.-..
T Consensus 238 --~~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 238 --GGGGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred --CCCCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEcc
Confidence 1235999764322 13456778889999998876433
No 378
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=91.13 E-value=2.3 Score=36.25 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCCEEEEEc--cchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHc----CCCCceEEEeC----CchhHHHHH
Q 029536 19 NAKNTMEIG--VFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKA----GVAHKIDFREG----PALPLLDQL 87 (192)
Q Consensus 19 ~~~~ileiG--~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~~----d~~~~~~~~ 87 (192)
+..+++-+| .+.|..+..+|+.... ..+++++|.+++.++.+++.+... |. ...++.. +..+.+..+
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHHHH
Confidence 346888886 3477788888877531 247999999999998888753211 11 1122221 121222222
Q ss_pred HhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 88 IQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
. ....+|+|+.... ....+..+.+.++++|.++
T Consensus 253 t---------~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v 285 (410)
T cd08238 253 T---------GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLN 285 (410)
T ss_pred h---------CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEE
Confidence 1 1346898876432 2456777888999877544
No 379
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=91.10 E-value=8.3 Score=32.38 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-..++........+-.++|+......+ ..+.++.+|+..+..-. .....+..+...|. ++.++..+..+
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 127 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLK 127 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHH
Confidence 4566677777777777777776777666555443 34444667777765432 23334444555554 45554433222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~ 137 (192)
.+.... ..+.++|++..+ +......++.+.++.+. |.++++|+++
T Consensus 128 ~l~~~i----------~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 128 AIEQAI----------TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHhc----------ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 233221 335678888654 32233445555555554 5577788876
No 380
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.08 E-value=1.1 Score=40.48 Aligned_cols=93 Identities=11% Similarity=-0.066 Sum_probs=57.7
Q ss_pred CEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~ 97 (192)
.+++-+| .|..+..+++.+. .+..++.+|.+++.++.+++ . ....+.||+.+ .+.+..
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~ag--------- 461 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAG--------- 461 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcC---------
Confidence 4677655 4777777766553 24689999999998887765 2 35678888754 343321
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
-.+.|.+++-.+.+......-...+.+.|...++.
T Consensus 462 -i~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 462 -AEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred -CccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 45788888766543322223333455667766654
No 381
>PRK08064 cystathionine beta-lyase; Provisional
Probab=91.01 E-value=6.5 Score=33.41 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....+-+.++........+-+++|+......+. .+.++.+|+..+..-. ......+.++..|. ++.++..+..+
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~ 129 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE 129 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence 56677777788877766666667777665544443 4554667777765322 33334444555554 45555443222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+-.+|++..+ +......++.+.++.+. |.++++|+++.
T Consensus 130 ~l~~~l----------~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 130 EVAQNI----------KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHHhc----------CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 222221 334578887755 22222223333333333 55777787753
No 382
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=90.99 E-value=3.3 Score=27.58 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=50.8
Q ss_pred EEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhc
Q 029536 47 ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIEL 124 (192)
Q Consensus 47 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~ 124 (192)
|..+|-++...+..++.+...++ ..+ ....+..+.+..+. ...+|+|++|.. ..+..++++.+...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~-~~v-~~~~~~~~~~~~~~----------~~~~d~iiid~~~~~~~~~~~~~~i~~~ 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGY-EEV-TTASSGEEALELLK----------KHPPDLIIIDLELPDGDGLELLEQIRQI 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTE-EEE-EEESSHHHHHHHHH----------HSTESEEEEESSSSSSBHHHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCC-CEE-EEECCHHHHHHHhc----------ccCceEEEEEeeeccccccccccccccc
Confidence 46789999999999999986554 122 34566666666664 457999999976 34456777777655
Q ss_pred cCCCeEEEEe
Q 029536 125 VKVGGVIGYD 134 (192)
Q Consensus 125 L~~gG~lv~~ 134 (192)
-....++++.
T Consensus 69 ~~~~~ii~~t 78 (112)
T PF00072_consen 69 NPSIPIIVVT 78 (112)
T ss_dssp TTTSEEEEEE
T ss_pred cccccEEEec
Confidence 4333455443
No 383
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.99 E-value=5.1 Score=30.00 Aligned_cols=127 Identities=19% Similarity=0.111 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHhCCCCcEEEEEeCC----chhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcc
Q 029536 27 GVFTGYSLLATALAIPDDGKILALDIT----KEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTF 102 (192)
Q Consensus 27 G~g~G~~~~~la~~~~~~~~v~~vD~~----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 102 (192)
|+|+|-++....-....+.+++-+... .++.+......... +........ ..+..+.+. + ..+.
T Consensus 7 ~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R--~~~w~t~E~-~~~l~~~l~-~--------~~~~ 74 (169)
T cd00544 7 GARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRR--PAHWRTIET-PRDLVSALK-E--------LDPG 74 (169)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhC--CCCceEeec-HHHHHHHHH-h--------cCCC
Confidence 788888877643222212344444433 23444333332222 233333322 123333332 1 1257
Q ss_pred cEEEEeCC--------Cc------C-cHHHHHHHHhccCCCe---EEEEeCccCCccccCCCCCCchhhhhhHHHHHHHH
Q 029536 103 DFVFVDAD--------KD------N-YVNYHKRLIELVKVGG---VIGYDNTLWGGSVVAPPDADLDEHFLYLRDFVQEL 164 (192)
Q Consensus 103 D~v~id~~--------~~------~-~~~~~~~~~~~L~~gG---~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 164 (192)
|+|++|+- .. . ..+.+..+...|+..+ +++-+++.++.... + ...+.+++.+-++
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~g~vp~---~----~~~r~f~d~lG~l 147 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGLGVVPE---N----ALGRRFRDELGRL 147 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCCCCCCC---C----HHHHHHHHHHHHH
Confidence 89999973 11 1 1233343555555443 34444444443322 2 2335667777788
Q ss_pred HHHhhcCC
Q 029536 165 NKALAVDP 172 (192)
Q Consensus 165 ~~~~~~~~ 172 (192)
++.++..-
T Consensus 148 nq~la~~a 155 (169)
T cd00544 148 NQRLAALA 155 (169)
T ss_pred HHHHHHHC
Confidence 88886553
No 384
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.92 E-value=6.8 Score=32.72 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+.++||-.|+| .|..+..+|+.. +.++++++.+++....+ .++.|.. .++.....+.+...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~---------- 244 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA---------- 244 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh----------
Confidence 45788888875 566666777775 46788888776543222 2234432 12211111122222
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
.+.+|+|| |..- ....++.+.+.|++||.++.-.
T Consensus 245 -~~~~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 245 -IGTMDYII-DTVS--AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -cCCCCEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence 23589876 4421 2345777889999999887643
No 385
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.90 E-value=2.4 Score=35.24 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=61.5
Q ss_pred hHcCCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEE--EeCCchhHHHHHHhhhh
Q 029536 16 KLINAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDF--REGPALPLLDQLIQDVS 92 (192)
Q Consensus 16 ~~~~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~~~~~~~~~ 92 (192)
...++.++.-+|.|. |.+...-|++.. .+++++||++++..++|++ .|..+-++- +.....+.+.+.-
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmT---- 259 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMT---- 259 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHh----
Confidence 445567888888864 444444455543 6899999999999998887 343322211 1223455555553
Q ss_pred cccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEEEeC
Q 029536 93 STKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIGYDN 135 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv~~d 135 (192)
++.+|+-|=-. ...+.++.++..-++| |.-++-.
T Consensus 260 ------dgGvDysfEc~---G~~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 260 ------DGGVDYSFECI---GNVSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred ------cCCceEEEEec---CCHHHHHHHHHHhhcCCCeEEEEE
Confidence 67888877322 1245566666666777 6554433
No 386
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=90.90 E-value=5.1 Score=34.03 Aligned_cols=123 Identities=13% Similarity=0.056 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.....+..+-+++|+......+...+.++.+|+..+..-. ........+...+. ++.+...+..+
T Consensus 60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d~~d~e 137 (388)
T PRK07811 60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVDLSDLD 137 (388)
T ss_pred CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeCCCCHH
Confidence 3556667777777777777777777765555544444555667777665432 12222222222222 23333222122
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.+.. ..+..+|++..+ +......++.+.++.+. |.++++|+++.
T Consensus 138 ~l~~~i----------~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 138 AVRAAI----------TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred HHHHhc----------CcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 222221 335678888654 22222334444444443 56778888754
No 387
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.90 E-value=1.8 Score=36.03 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=64.4
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCC
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYH 99 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 99 (192)
..+++|+-||.|+..+-+..+. -..+.++|+++.+.+.-+.|+.. -.+...|..+...+-. .
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----------~ 64 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----------R 64 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----------c
Confidence 4579999999999888777653 35789999999988877776642 4455666655433221 1
Q ss_pred C-cccEEEEeCCC---------------c-CcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 100 G-TFDFVFVDADK---------------D-NYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 100 ~-~~D~v~id~~~---------------~-~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
. .+|+++-..+- . ...-.+..++..++| -++++.|+-
T Consensus 65 ~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 65 KSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred ccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 2 78988765441 1 111223445577888 777787763
No 388
>PLN02256 arogenate dehydrogenase
Probab=90.89 E-value=2.9 Score=34.41 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHhHcCCCEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 11 FSMLLKLINAKNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
|+.-+...+..+|.-||+ |..+..++..+.. +.+++++|.++. .+.+ ...+. .. ..+..+..
T Consensus 27 ~~~~~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~----- 89 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC----- 89 (304)
T ss_pred HhHhhccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh-----
Confidence 444445556678988997 4445555554431 357999998863 2222 22332 11 12222111
Q ss_pred hhhcccccCCCcccEEEEeCCCcCcHHHHHHH-HhccCCCeEE
Q 029536 90 DVSSTKEKYHGTFDFVFVDADKDNYVNYHKRL-IELVKVGGVI 131 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~-~~~L~~gG~l 131 (192)
....|+|++..+.....++++.+ ...++++.++
T Consensus 90 ---------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 90 ---------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred ---------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence 12468888877665566677766 5667777654
No 389
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.83 E-value=3.4 Score=33.87 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=46.3
Q ss_pred EEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEEeCCch
Q 029536 22 NTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPAL 81 (192)
Q Consensus 22 ~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 81 (192)
+||-+||| .|...+..+...+ -++++.+|.+. ...+.|.+.+.+....-+++.+..+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47888885 4443333332222 47899988753 345566667766655556777776665
Q ss_pred hHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 82 PLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
+....+ -.+||+|+...+
T Consensus 80 ~~~~~f-----------~~~fdvVi~alD 97 (291)
T cd01488 80 DKDEEF-----------YRQFNIIICGLD 97 (291)
T ss_pred chhHHH-----------hcCCCEEEECCC
Confidence 543333 357999887555
No 390
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.82 E-value=0.48 Score=37.31 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
..-|+|||.|.|+.++.+..+- .+++..+|.++.++.-.+-..+.+ +.+..++++|...+
T Consensus 51 ~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 4579999999999999998763 478999999998886655433322 24788899987654
No 391
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.80 E-value=1.4 Score=39.31 Aligned_cols=93 Identities=6% Similarity=-0.054 Sum_probs=57.3
Q ss_pred CEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~ 97 (192)
.+++-+|+ |..+..+++.+.. +..++.+|.+++..+.+++ .....+.+|+.+. +.+.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a---------- 477 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLA---------- 477 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhc----------
Confidence 46666555 7777777777642 4689999999988777764 2467888987653 3332
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.-++.|.+++..+.+.....+-...+..+|...++.
T Consensus 478 ~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 478 HLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred CccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 145789887754432222222223344567666654
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.74 E-value=0.83 Score=34.04 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=32.9
Q ss_pred hHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHH
Q 029536 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (192)
Q Consensus 16 ~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 62 (192)
...+|.+|+-+|.| .|..+..++..+ +.+++..|..+...+..+.
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES 61 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence 34578899999998 677788888887 4789999999876665444
No 393
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.73 E-value=4.5 Score=33.76 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=56.4
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..++|-.|+| .|..+..+|+... ...+++++.+++..+.+++ .+...-+.....|. ++...+...
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~-~~~~~l~~~------ 249 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDK-PIVEVLTEM------ 249 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccc-hHHHHHHHH------
Confidence 456788877764 4555566677653 3358888888877666543 34422222222210 222222111
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccC-CCeEEEEe
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVK-VGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~-~gG~lv~~ 134 (192)
..+.+|+|+ |..- ....+..+.+.|+ ++|.++.-
T Consensus 250 -~~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 250 -TDGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -hCCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEE
Confidence 134689876 4321 2345677788899 99988764
No 394
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=90.70 E-value=10 Score=32.62 Aligned_cols=123 Identities=20% Similarity=0.131 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEe-CCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 5 PDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALD-ITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 5 ~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
|..-.+-..+........++-.-+|...++..+...+|.+.++++.+ +--.-....++...+.|. ..+++..+-.+-
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi--e~~~vd~~~~~~ 154 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGG--EGDFVDVDDLKK 154 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCc--eeeeechhhHHH
Confidence 33444555666777778899988888777777777777777888776 333455566666666555 355555443333
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhcc-CCCeEEEEeCccCC
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELV-KVGGVIGYDNTLWG 139 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L-~~gG~lv~~d~~~~ 139 (192)
+.... .+.-++||+-.+ +.-....++.+.++- ++|-.+|+||++-.
T Consensus 155 ~~~~i----------~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 155 ILKAI----------KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGS 203 (409)
T ss_pred HHHhh----------ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCc
Confidence 33321 446899999876 221222333343333 45557777888643
No 395
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.66 E-value=0.17 Score=35.18 Aligned_cols=39 Identities=15% Similarity=0.514 Sum_probs=27.5
Q ss_pred cccEEEEeCC---------CcCcHHHHHHHHhccCCCeEEEEeCccCC
Q 029536 101 TFDFVFVDAD---------KDNYVNYHKRLIELVKVGGVIGYDNTLWG 139 (192)
Q Consensus 101 ~~D~v~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~d~~~~ 139 (192)
+||+|++-+. .+....+|+.+..+|+|||++++.--.|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~ 48 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK 48 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence 4888887654 23457799999999999999998755543
No 396
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=90.65 E-value=9.5 Score=32.34 Aligned_cols=124 Identities=17% Similarity=0.137 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++....+..++-..+|+......+...+.++.+|+..+..-. ............+. ++.+...+..+
T Consensus 50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~--~v~~~d~~d~~ 127 (382)
T TIGR02080 50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCF--RVLFVDQGDEQ 127 (382)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCe--EEEEECCCCHH
Confidence 4556667777777777778876666666655555444555667776665543 23333333222222 34444332222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccC-CCeEEEEeCccCC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWG 139 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~d~~~~ 139 (192)
.+.+.. ..+-.+|++..+ +....-.++.+.++.+ .|.++++|+++..
T Consensus 128 ~l~~ai----------~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 128 ALRAAL----------AQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred HHHHhc----------CcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 222221 334678887654 2111112333333333 3567888888643
No 397
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.61 E-value=1.7 Score=37.86 Aligned_cols=96 Identities=11% Similarity=-0.031 Sum_probs=62.4
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGT 101 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 101 (192)
+++.+|||.=.....+-+.. -..++.+|+|+-.++.....-. .-.+..++...|.... .+.+++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l------------~fedES 114 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQL------------VFEDES 114 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhc------------cCCCcc
Confidence 79999997766555554432 3579999999988765554322 2225677777776543 123778
Q ss_pred ccEEEEeCC-------------CcCcHHHHHHHHhccCCCeEEEE
Q 029536 102 FDFVFVDAD-------------KDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 102 ~D~v~id~~-------------~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
||+|+.-+. ..+....+..+.+.+++||..+.
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 888864322 12334566778899999997543
No 398
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.61 E-value=4.4 Score=32.40 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=49.5
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhcccccC
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTKEKY 98 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~~ 98 (192)
+.+|-.|+ |..+..+++.+..+.+|+.++.+++..+...+.+...+ .++.++..|..+. ...+...+ . .
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~----~-~ 73 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATA----Q-T 73 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHH----H-h
Confidence 35666665 56888888777656899999998776655555554433 3677777776442 22222110 0 1
Q ss_pred CCcccEEEEeCC
Q 029536 99 HGTFDFVFVDAD 110 (192)
Q Consensus 99 ~~~~D~v~id~~ 110 (192)
.+++|.++..+.
T Consensus 74 ~g~id~li~nAG 85 (275)
T PRK06940 74 LGPVTGLVHTAG 85 (275)
T ss_pred cCCCCEEEECCC
Confidence 357899887654
No 399
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=0.31 Score=41.20 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred HHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH
Q 029536 12 SMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL 83 (192)
Q Consensus 12 ~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 83 (192)
..++....+.+++|+.|..|..|..+|..++..+++.++|.+++..+.-++.+...|. ..++...+|+..+
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t 276 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNT 276 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCC
Confidence 3455555678999999999999999999887679999999999999999999988887 4566668877654
No 400
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.58 E-value=3.5 Score=33.75 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=56.8
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.++.+||..|+| .|..+..+|+... ...+++++.++...+.+++ .+.. .++.....++...+...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~i~~~------ 231 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGAT---DIINPKNGDIVEQILEL------ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCc---EEEcCCcchHHHHHHHH------
Confidence 345688777765 4667777888753 2478888887766555443 3321 22222222222222111
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.....+|+++ |.... ...+...++.|+++|.++.-
T Consensus 232 ~~~~~~d~vl-d~~g~--~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 232 TGGRGVDCVI-EAVGF--EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cCCCCCcEEE-EccCC--HHHHHHHHHHhhcCCEEEEE
Confidence 0135689876 43221 24677788899999988753
No 401
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.53 E-value=3.9 Score=34.12 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=57.2
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..++|-.|+| .|..+..+|+... ...+++++.+++..+.+++ .+.. .++..+..++...+...
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~------ 250 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREI------ 250 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHH------
Confidence 446788888764 4666677777764 3479999999877665544 3431 22222211222222111
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+|+--... ...+..+++.|+++|.++.-
T Consensus 251 -~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 251 -TGGGVDYALDTTGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred -hCCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence 13468987532211 24567788899999988753
No 402
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=90.53 E-value=8.6 Score=32.59 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc-hhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|=..++.....+..+-+++|+......++ .+.++.+|+..+..- .........+...+. .+.++..+..+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd~~d~e 125 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIIDTSDLS 125 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcCCCCHH
Confidence 46666777777777777778888888776654443 455567787766532 222333344444444 34444333222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+..+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 126 ~l~~ai----------~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 126 QIKKAI----------KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHHhc----------CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 233221 335678887544 21112223344444444 55667777753
No 403
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.43 E-value=4 Score=29.02 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=48.7
Q ss_pred CCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEEeCC
Q 029536 20 AKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGP 79 (192)
Q Consensus 20 ~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 79 (192)
..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+.+....-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 4689999996 4544443332222 47899998752 3456677777776655567777776
Q ss_pred c-hhHHHHHHhhhhcccccCCCcccEEEEeCCC
Q 029536 80 A-LPLLDQLIQDVSSTKEKYHGTFDFVFVDADK 111 (192)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~ 111 (192)
. .+....+ -..+|+|+.-.+.
T Consensus 81 ~~~~~~~~~-----------~~~~d~vi~~~d~ 102 (135)
T PF00899_consen 81 IDEENIEEL-----------LKDYDIVIDCVDS 102 (135)
T ss_dssp CSHHHHHHH-----------HHTSSEEEEESSS
T ss_pred ccccccccc-----------ccCCCEEEEecCC
Confidence 6 3333333 2468988775553
No 404
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.43 E-value=7.7 Score=31.93 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=53.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC--CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.+.++|+-+|+ |..+..++..+. ....++.++.+++..+.. ..+.+. ... +..+..+.
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l---a~~~g~----~~~--~~~~~~~~--------- 235 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEEL---AKELGG----NAV--PLDELLEL--------- 235 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH---HHHcCC----eEE--eHHHHHHH---------
Confidence 46789999998 555544444332 236799999987654322 222232 122 12222222
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccC
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLW 138 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~ 138 (192)
-...|+||.-.....+...+..+....+.++.+++|=..+
T Consensus 236 ---l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 236 ---LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred ---HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 2357999887765555444555444443467787775543
No 405
>PRK08507 prephenate dehydrogenase; Validated
Probab=90.40 E-value=1.5 Score=35.29 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=50.5
Q ss_pred EEEEEccchhHHHHHHHHhCCCC---cEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 22 NTMEIGVFTGYSLLATALAIPDD---GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
+|.-||+ |..+..++..+... .+++++|.+++..+.+++ .+.... ..+ .+..
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~~----~~~----~~~~----------- 56 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVDE----IVS----FEEL----------- 56 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCcc----cCC----HHHH-----------
Confidence 4666776 55555555544322 379999999887665532 333111 111 1122
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
.. .|+||+-.+.....+.+..+.+ ++++.+|+
T Consensus 57 ~~-aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 57 KK-CDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred hc-CCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 22 7999998877767777888877 88877555
No 406
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=90.30 E-value=6.4 Score=34.02 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc-hhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-..++.....+..+-.++|+......+...+.++.+|+..+..- .........+...|. ++.++..+..+
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e 140 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE 140 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence 456667777778878788888888888777766655455566777766432 222333444555554 45555443223
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~ 137 (192)
.+.+.. ..+..+|++... +......++.+.+..+. |.++++|++.
T Consensus 141 ~l~~ai----------~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 141 NFEAAI----------TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred HHHHhc----------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence 333321 345678888643 21111123334333334 4567777775
No 407
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=90.25 E-value=11 Score=32.21 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-..++.......++-..+|+......+...+.++.+|+..+..-. ............++ ++.++.....+
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e 129 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA 129 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 5667778888888888889998888777776666554555667776654432 22222232322222 33343322112
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccC-CCeEEEEeCccCCc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVK-VGGVIGYDNTLWGG 140 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~d~~~~g 140 (192)
.+.... ..+-++|++..+ +....-.++.+.++.+ .|.++++|+++..+
T Consensus 130 ~l~~~i----------~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 130 ALDAAL----------AKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred HHHHhc----------CcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 222221 335688988654 2111111223333333 36678888886543
No 408
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.17 E-value=6.9 Score=32.09 Aligned_cols=99 Identities=23% Similarity=0.263 Sum_probs=56.4
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..++|-.|+| .|..+..+|+... ..++++++.++...+.+++ .+...-+.....+....+..+.
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~-------- 231 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT-------- 231 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh--------
Confidence 445677667654 4445556676653 2678889888776655543 4442223332223222222221
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+++ |.. .-...++.+.+.|+++|.++.
T Consensus 232 -~~~~~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 232 -DGRGVDVVI-EAV--GIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred -CCCCCCEEE-ECC--CCHHHHHHHHHhccCCcEEEE
Confidence 134699876 443 123456778889999998875
No 409
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.10 E-value=12 Score=32.47 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=52.1
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
..++++-+|+| .|......++.+ +.+|+.+|.++.....+.. .|. ++. +. ...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l----~ea---------- 264 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TM----EEA---------- 264 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CH----HHH----------
Confidence 67899999987 344444445554 4689999999876443322 122 211 21 222
Q ss_pred CCCcccEEEEeCCCcCcHHHHH-HHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDADKDNYVNYHK-RLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~-~~~~~L~~gG~lv~~ 134 (192)
-...|+|+.-.. ....++ .....+|+|++++.-
T Consensus 265 -l~~aDVVI~aTG---~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 265 -AELGDIFVTATG---NKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred -HhCCCEEEECCC---CHHHHHHHHHhcCCCCCEEEEc
Confidence 235798876432 234454 567899999998854
No 410
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=90.03 E-value=6.4 Score=32.16 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=59.0
Q ss_pred hHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 16 ~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
...+..+||-.|+| .|..++.+|+.. +.+++++..+++..+.+++ .+...-+.....+..+.+....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~------ 223 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT------ 223 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh------
Confidence 34456788888876 377777788875 5788888888776655533 3332212222222222232221
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+++-.... ...+..+.+.|+++|.++.
T Consensus 224 ---~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 ---DGEGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred ---CCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 13458998653211 3456777888999998774
No 411
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.00 E-value=5.3 Score=30.64 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=47.4
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhC--CCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEE
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDF 75 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~ 75 (192)
..+..+|+-+|||. .+..+++.+ ..-++++.+|.+. ...+.+++.+++.+..-+++.
T Consensus 18 ~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 18 RLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 34567899999863 333433332 2247899998763 234455666766655445655
Q ss_pred EeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCC
Q 029536 76 REGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADK 111 (192)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~ 111 (192)
+.....+..+.+ -..||+|+...+.
T Consensus 96 ~~~~~~~~~~~~-----------~~~~dvVi~~~~~ 120 (197)
T cd01492 96 DTDDISEKPEEF-----------FSQFDVVVATELS 120 (197)
T ss_pred EecCccccHHHH-----------HhCCCEEEECCCC
Confidence 555443322232 3578998875543
No 412
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.96 E-value=7.5 Score=33.72 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCEEEEEc-cchhHHHHH--HHHhCC-CCcEEEEEeCCchh---HHHHHHHHHHcCCCCceEEEe----CCchh----HH
Q 029536 20 AKNTMEIG-VFTGYSLLA--TALAIP-DDGKILALDITKEH---YEKGLPIIQKAGVAHKIDFRE----GPALP----LL 84 (192)
Q Consensus 20 ~~~ileiG-~g~G~~~~~--la~~~~-~~~~v~~vD~~~~~---~~~a~~~~~~~~~~~~v~~~~----~d~~~----~~ 84 (192)
|..|+=+| .|.|-+|.. ||..+. .+.+|..++.++.. .+..+.+.+.. .+.++. .|+.. -+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~----~vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKA----RIPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhcc----CCeEEeecCCCCHHHHHHHHH
Confidence 44567777 567776654 444432 23467777776543 33333333333 333332 23222 12
Q ss_pred HHHHhhhhcccccCCCcccEEEEeCCCc-----CcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 85 DQLIQDVSSTKEKYHGTFDFVFVDADKD-----NYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~D~v~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
..+. ...||+|++|..-. ...+.+..+.+..+|.=++++-|..
T Consensus 176 ~~~~----------~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 176 EKFK----------KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred HHHH----------hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 2221 35799999998722 2334455555677787666655543
No 413
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.90 E-value=6.8 Score=32.78 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc---------------------hhHHHHHHHHHHcCCCCceE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK---------------------EHYEKGLPIIQKAGVAHKID 74 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~ 74 (192)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+..-+++
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4456789999997 3443333222222 47899999863 23445556666655434555
Q ss_pred EEeCCchh-HHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 75 FREGPALP-LLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 75 ~~~~d~~~-~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.+..+... ....+ -..+|+|+.-.+
T Consensus 100 ~~~~~~~~~~~~~~-----------~~~~DlVid~~D 125 (339)
T PRK07688 100 AIVQDVTAEELEEL-----------VTGVDLIIDATD 125 (339)
T ss_pred EEeccCCHHHHHHH-----------HcCCCEEEEcCC
Confidence 66555432 22222 346898876544
No 414
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.86 E-value=3.2 Score=29.64 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHH-HHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSL-LATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
|-..+++..+..+++|+|.|.=... ..|.+. +..|+++|+++.. . ...+.++..|..+--..+
T Consensus 4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~~-------a-----~~g~~~v~DDif~P~l~i- 67 (127)
T PF03686_consen 4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPRK-------A-----PEGVNFVVDDIFNPNLEI- 67 (127)
T ss_dssp HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH-
T ss_pred HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECcccc-------c-----ccCcceeeecccCCCHHH-
Confidence 4445566677789999999765533 334443 4789999999871 1 135667777765432222
Q ss_pred hhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhcc
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELV 125 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L 125 (192)
-...|+|+.=-++...+..+-.+.+.+
T Consensus 68 ----------Y~~a~lIYSiRPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 68 ----------YEGADLIYSIRPPPELQPPILELAKKV 94 (127)
T ss_dssp ----------HTTEEEEEEES--TTSHHHHHHHHHHH
T ss_pred ----------hcCCcEEEEeCCChHHhHHHHHHHHHh
Confidence 246799986655555555555554443
No 415
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.86 E-value=2.1 Score=36.55 Aligned_cols=73 Identities=23% Similarity=0.202 Sum_probs=46.4
Q ss_pred CEEEEEccchhHHHHHHHHhCC--CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhcccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIP--DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTKE 96 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~ 96 (192)
++||-|||| ..+...|..+. .+..|+..|.+++..+++..... .+++.+.-|+.+. +.++
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l--------- 65 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL--------- 65 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH---------
Confidence 579999994 44444443322 13799999999888777765432 3788888877654 2233
Q ss_pred cCCCcccEEEEeCCC
Q 029536 97 KYHGTFDFVFVDADK 111 (192)
Q Consensus 97 ~~~~~~D~v~id~~~ 111 (192)
-..+|+|+.-.+.
T Consensus 66 --i~~~d~VIn~~p~ 78 (389)
T COG1748 66 --IKDFDLVINAAPP 78 (389)
T ss_pred --HhcCCEEEEeCCc
Confidence 2345888765543
No 416
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.85 E-value=6.8 Score=32.16 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhC-CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTK 95 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 95 (192)
..+.||-.|.|.|. ++.+|..+ ...++++..|++++..+...+.+++.| ++..+..|..+. +...+.+++.
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~-- 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK-- 110 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH--
Confidence 45688988888775 33333332 235789999999999888888888775 677777775431 2222222211
Q ss_pred ccCCCcccEEEEeCC
Q 029536 96 EKYHGTFDFVFVDAD 110 (192)
Q Consensus 96 ~~~~~~~D~v~id~~ 110 (192)
+.+..|+++-++.
T Consensus 111 --e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 111 --EVGDVDILVNNAG 123 (300)
T ss_pred --hcCCceEEEeccc
Confidence 2567888876653
No 417
>PRK06460 hypothetical protein; Provisional
Probab=89.84 E-value=11 Score=31.81 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCC-chhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDIT-KEHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|...++-+.++.....+..+-+++|+......+...+.++.+|+..+.. +.........++..|. ++.++..+...
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--~v~~~~~~~~~ 121 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--NVDASNPGSDN 121 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCc--EEEEECCCCHH
Confidence 45566666777777766656666666654444444344545666664432 1223333344455554 35555444333
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.++... ..+..+|++..+ +....-.++.+.++.+. |.++++|+++.
T Consensus 122 ~l~~~~----------~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~ 170 (376)
T PRK06460 122 IIEKAK----------SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS 170 (376)
T ss_pred HHHHhc----------CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC
Confidence 443331 235578888765 21111112333333344 56777888753
No 418
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.74 E-value=4.6 Score=34.88 Aligned_cols=101 Identities=16% Similarity=0.311 Sum_probs=60.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCc-----------eEEEeCCchhHHHH
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHK-----------IDFREGPALPLLDQ 86 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-----------v~~~~~d~~~~~~~ 86 (192)
.++.+|--||. |+.++.+|..+..+.+|+++|++++.++..++ |..+. -.+...+..+ .
T Consensus 4 ~~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~-----G~~~~~e~~~~~l~~~g~l~~t~~~~---~ 73 (425)
T PRK15182 4 IDEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKN-----GVDVNLETTEEELREARYLKFTSEIE---K 73 (425)
T ss_pred CCCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHC-----cCCCCCCCCHHHHHhhCCeeEEeCHH---H
Confidence 34566777765 77778877777656789999999988776552 11100 0111111111 1
Q ss_pred HHhhhhcccccCCCcccEEEEeCC-C------cC---cHHHHHHHHhccCCCeEEEEeCccCCc
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDAD-K------DN---YVNYHKRLIELVKVGGVIGYDNTLWGG 140 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~-~------~~---~~~~~~~~~~~L~~gG~lv~~d~~~~g 140 (192)
-...|++|+.-+ + .+ .....+.+.+.|++|.+++..-+...|
T Consensus 74 ------------~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 74 ------------IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred ------------HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 235688887644 1 11 222345667889999988887776654
No 419
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.73 E-value=1.4 Score=39.90 Aligned_cols=93 Identities=15% Similarity=0.005 Sum_probs=55.9
Q ss_pred CEEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh--HHHHHHhhhhccccc
Q 029536 21 KNTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP--LLDQLIQDVSSTKEK 97 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~ 97 (192)
.+++-+|+ |..+..+++.+.. +..++.+|.+++.++.+++ .....+.||+.+ .+.+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~a---------- 460 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESA---------- 460 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhc----------
Confidence 57888766 5555555555432 4579999999999887765 235678888754 33332
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.-++.|.+++-.+........-...+.+.|+-.++.
T Consensus 461 gi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 461 GAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 145788888766533222222233344556654443
No 420
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.61 E-value=5.9 Score=31.36 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=43.0
Q ss_pred EEEEEccchhHHHHHHHHhC--CCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEEeCCc
Q 029536 22 NTMEIGVFTGYSLLATALAI--PDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFREGPA 80 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 80 (192)
+||-+|+| +.+..+++.+ ..-++++.+|.+. ...+.+.+.+.+.+..-+++.+....
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 36778875 3333333332 1247888888753 23455566666665544566666655
Q ss_pred h---hHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 81 L---PLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 81 ~---~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
. ++...+ -.+||+|+.-.+
T Consensus 79 ~~~~~~~~~f-----------~~~~DvVi~a~D 100 (234)
T cd01484 79 GPEQDFNDTF-----------FEQFHIIVNALD 100 (234)
T ss_pred ChhhhchHHH-----------HhCCCEEEECCC
Confidence 2 222222 357999887555
No 421
>PRK08324 short chain dehydrogenase; Validated
Probab=89.57 E-value=5.8 Score=36.35 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH------HHHHHhhh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDV 91 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 91 (192)
..+.+|-+|+ +|..+..+++.+. .+.+|+.++.+++..+.+.+.+... .++.++..|..+. ++.....
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~- 495 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA- 495 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence 3468888875 3444444444432 3578999999987766655544332 4677777775432 2222111
Q ss_pred hcccccCCCcccEEEEeCC
Q 029536 92 SSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~ 110 (192)
.+++|+|+..+.
T Consensus 496 -------~g~iDvvI~~AG 507 (681)
T PRK08324 496 -------FGGVDIVVSNAG 507 (681)
T ss_pred -------cCCCCEEEECCC
Confidence 357899887654
No 422
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.54 E-value=5.5 Score=33.85 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=60.0
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC---CchhHHHHHHhhhh
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDVS 92 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~ 92 (192)
..+..++|-.|+| .|..+..+|+... ...++.+|.+++..+.+++ .|. . .+... +..+.+..+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~---- 250 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQIL---- 250 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHc----
Confidence 3455677777775 5556666777653 3446677888877776665 344 2 22221 1222222221
Q ss_pred cccccCCCcccEEEEeCCCcC-----------cHHHHHHHHhccCCCeEEEEeCcc
Q 029536 93 STKEKYHGTFDFVFVDADKDN-----------YVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
....+|+++--..... ....++.+.+.+++||.+++-.+.
T Consensus 251 -----~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 251 -----GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -----CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 1246898764222110 124688889999999999885553
No 423
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=89.33 E-value=1.3 Score=31.98 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|+||+-.......+.++.+.+.+.++..+++
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 57899999977666678889999999999976654
No 424
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.21 E-value=6.1 Score=32.27 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=55.9
Q ss_pred CCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+..+||-.|+|. |..+..+|+... ..++++++.+++..+.+++ .+.. .++...... +.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~-------- 227 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA-------- 227 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--------
Confidence 567888887764 667777887753 2378999988776664443 3331 122222111 222211
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
..+.+|+++--... ...++.+++.|+++|.++.
T Consensus 228 ~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 228 DKGDFDVVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred cCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 13458997653221 3456778899999998875
No 425
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=89.19 E-value=11 Score=30.75 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=59.4
Q ss_pred hHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC-CchhHHHHHHhhhhc
Q 029536 16 KLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG-PALPLLDQLIQDVSS 93 (192)
Q Consensus 16 ~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 93 (192)
...++.++|-.|+| .|..+..+|+... +.++++++.+++..+.+++ .+.. .+ +.. +..++...+...
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~v~~~--- 227 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGAD-LT--INSKRVEDVAKIIQEK--- 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCc-EE--ecccccccHHHHHHHh---
Confidence 33456788887754 5566666777532 5689999999887776643 3442 11 211 111222222211
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.+|.++++... ...++.+++.|+++|.++.
T Consensus 228 -----~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 228 -----TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred -----cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence 2358877776532 4567888899999998875
No 426
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.19 E-value=1.8 Score=36.92 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=25.3
Q ss_pred EEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHH
Q 029536 23 TMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLP 62 (192)
Q Consensus 23 ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 62 (192)
|--||. |+.++.+|..+..+..|+++|++++.++..++
T Consensus 3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 445565 55555554443335679999999999887765
No 427
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.14 E-value=4.8 Score=34.59 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=56.5
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhcccccC
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTKEKY 98 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~~ 98 (192)
+|+-+|+ |..+..++..+. .+..++.+|.+++.++.+++. ..++++.+|+.+. +... .
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~----------~ 62 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREA----------G 62 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHc----------C
Confidence 5777766 788888887664 356899999999877655431 2467788887542 2222 1
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCC-eEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVG-GVIG 132 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~g-G~lv 132 (192)
-..+|.|++..........+....+.+.+. .+++
T Consensus 63 ~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 63 AEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 357898888665433333344444555344 3443
No 428
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=89.10 E-value=3.1 Score=36.36 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=54.4
Q ss_pred hHcCCCEEEEEccchhHHHHHHHHhCCC-CcEEE------EEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHH
Q 029536 16 KLINAKNTMEIGVFTGYSLLATALAIPD-DGKIL------ALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLI 88 (192)
Q Consensus 16 ~~~~~~~ileiG~g~G~~~~~la~~~~~-~~~v~------~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 88 (192)
...+.++|+-||||. .+...|..+.. +..++ +||.+....++|.+ .|+. ..+..+.+
T Consensus 32 ~~LkgKtIaIIGyGS--qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~---- 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGA--QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI---- 95 (487)
T ss_pred HHhCCCEEEEEccCH--HHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----
Confidence 455778999999954 44433333331 23444 44444444444443 3431 13332322
Q ss_pred hhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
...|+|++-.+......+.+.+.+.||||.+|.+.
T Consensus 96 -----------~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 -----------PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred -----------HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence 35699988766444566678899999999999874
No 429
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.94 E-value=9.4 Score=30.15 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=45.6
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEEe
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFRE 77 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~ 77 (192)
.+..+|+-+||| .|......+.... -++++.+|.+. ...+.+++.+.+.+..-+++.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 456789999996 4554444332222 47899999763 23444556666655434455554
Q ss_pred CCch-hHHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 78 GPAL-PLLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 78 ~d~~-~~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.... +....+. ...||+|+.-.+
T Consensus 88 ~~i~~~~~~~l~----------~~~~D~VvdaiD 111 (231)
T cd00755 88 EFLTPDNSEDLL----------GGDPDFVVDAID 111 (231)
T ss_pred eecCHhHHHHHh----------cCCCCEEEEcCC
Confidence 4332 1222331 346998876444
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.92 E-value=8.8 Score=33.36 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCEEEEEc-cchhHHHHH--HHHhCC-CCcEEEEEeCCch---hHHHHHHHHHHcCCCCceEEEe----CCchhHHHHHH
Q 029536 20 AKNTMEIG-VFTGYSLLA--TALAIP-DDGKILALDITKE---HYEKGLPIIQKAGVAHKIDFRE----GPALPLLDQLI 88 (192)
Q Consensus 20 ~~~ileiG-~g~G~~~~~--la~~~~-~~~~v~~vD~~~~---~~~~a~~~~~~~~~~~~v~~~~----~d~~~~~~~~~ 88 (192)
|..|+=+| .|+|-+|.. +|..+. .+.++..++.+.. ..+..+.+....+++ ++. .+....+....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp----~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP----FYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc----EEecCCccCHHHHHHHHH
Confidence 55666666 456655544 555443 2356777776653 233444445554442 322 23333232222
Q ss_pred hhhhcccccCCCcccEEEEeCCCcC-----cHHHHHHHHhccCCCeEEEEeCc
Q 029536 89 QDVSSTKEKYHGTFDFVFVDADKDN-----YVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
.. ...+|+|++|..... ..+.+..+.....|.-++++-|.
T Consensus 171 ~~--------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda 215 (437)
T PRK00771 171 EK--------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA 215 (437)
T ss_pred HH--------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence 11 234699999987322 23344556667788887776554
No 431
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.83 E-value=1.4 Score=35.33 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred HHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCc
Q 029536 35 LATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNY 114 (192)
Q Consensus 35 ~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~ 114 (192)
+.|.+..+ ..+|+++|.+++..+.|.+ .|..+. ...+ .+. -..+|+|++..+....
T Consensus 3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~----~~~------------~~~~DlvvlavP~~~~ 58 (258)
T PF02153_consen 3 LALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDE---ASTD----IEA------------VEDADLVVLAVPVSAI 58 (258)
T ss_dssp HHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSE---EESH----HHH------------GGCCSEEEE-S-HHHH
T ss_pred HHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeee---ccCC----HhH------------hcCCCEEEEcCCHHHH
Confidence 44444433 6899999999998877754 344221 1111 122 2356999988877777
Q ss_pred HHHHHHHHhccCCCeEEE
Q 029536 115 VNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 115 ~~~~~~~~~~L~~gG~lv 132 (192)
.++++.+.+.+++|+++.
T Consensus 59 ~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHHCGS-TTSEEE
T ss_pred HHHHHHhhhhcCCCcEEE
Confidence 888888888888887765
No 432
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.70 E-value=6.4 Score=32.34 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=55.9
Q ss_pred HcCCCEEEEEccch-hHHHHHHHHhCCCCcE-EEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCc---hhHHHHHHhhh
Q 029536 17 LINAKNTMEIGVFT-GYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPA---LPLLDQLIQDV 91 (192)
Q Consensus 17 ~~~~~~ileiG~g~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~ 91 (192)
..+..++|-.|+|. |..+..+|+... .+ ++.++.+++..+.+++ .+...-+.....+. .+.+....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~--- 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL--- 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh---
Confidence 34567787777653 667777888753 44 8888888776665544 23321111111221 11122211
Q ss_pred hcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 92 SSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+|+-.... ...+....+.|+++|.++.
T Consensus 231 ------~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 231 ------GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred ------CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 13458987643221 2356777889999998875
No 433
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.66 E-value=3.4 Score=33.47 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=27.0
Q ss_pred CcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 100 GTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 100 ~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
..+|+||+-.......+.++.+.+.+.++.+|+.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5789999987766678888888888888876653
No 434
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=88.54 E-value=1.4 Score=28.50 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred cCCCEEEEEccchhHHHH-HHHHhCCCCcEEEEEeCC
Q 029536 18 INAKNTMEIGVFTGYSLL-ATALAIPDDGKILALDIT 53 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~-~la~~~~~~~~v~~vD~~ 53 (192)
..|+++|-||+.+|+-.. .++.++..++..++|-.+
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 457999999999998443 455555545666666544
No 435
>PRK05854 short chain dehydrogenase; Provisional
Probab=88.51 E-value=5.9 Score=32.40 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=51.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhcc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~ 94 (192)
.+.++++-+|+. ++.+..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++..|..+. ...+..++.
T Consensus 12 l~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~-- 88 (313)
T PRK05854 12 LSGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR-- 88 (313)
T ss_pred cCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--
Confidence 356788888865 445555555543 35789999988877666665554432224678888886542 122211100
Q ss_pred cccCCCcccEEEEeC
Q 029536 95 KEKYHGTFDFVFVDA 109 (192)
Q Consensus 95 ~~~~~~~~D~v~id~ 109 (192)
...++.|+++..+
T Consensus 89 --~~~~~iD~li~nA 101 (313)
T PRK05854 89 --AEGRPIHLLINNA 101 (313)
T ss_pred --HhCCCccEEEECC
Confidence 0146789988654
No 436
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.40 E-value=0.84 Score=31.68 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=24.5
Q ss_pred CCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc
Q 029536 20 AKNTMEIGVFTGYSLLATALAIPDDGKILALDITK 54 (192)
Q Consensus 20 ~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~ 54 (192)
+...+|||||.|...-.|... +-.-.|+|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 457999999999988777654 45568888754
No 437
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.34 E-value=6.5 Score=30.82 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=51.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH------HHHHHhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQD 90 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~ 90 (192)
.+.+++|-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++..|..+. +......
T Consensus 5 l~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356789988864 555555555542 35789999998877766666665432335677888886432 2222211
Q ss_pred hhcccccCCCcccEEEEeC
Q 029536 91 VSSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~ 109 (192)
.+++|.++..+
T Consensus 84 --------~g~id~li~~a 94 (260)
T PRK07063 84 --------FGPLDVLVNNA 94 (260)
T ss_pred --------hCCCcEEEECC
Confidence 35789887654
No 438
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.33 E-value=7.6 Score=33.64 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCEEEEEcc-chh------HHHHHHHHhCCCCcEEEEEeC-CchhHHHHHHHHHHcCCCCceEEEeCC----chhHHHH
Q 029536 19 NAKNTMEIGV-FTG------YSLLATALAIPDDGKILALDI-TKEHYEKGLPIIQKAGVAHKIDFREGP----ALPLLDQ 86 (192)
Q Consensus 19 ~~~~ileiG~-g~G------~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~~~~ 86 (192)
+|..|+=+|- |+| -.+.++.+. ....-++++|. -|.++++.+....+.++ .|+..+ +.+....
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~ 173 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKA 173 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHH
Confidence 3556777763 333 333444432 22345778886 46677888887777654 344332 2222111
Q ss_pred HHhhhhcccccCCCcccEEEEeCC-C----cCcHHHHHHHHhccCCCeEEEEeCccCCccccCCCCCCchhhhhhHHHHH
Q 029536 87 LIQDVSSTKEKYHGTFDFVFVDAD-K----DNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPPDADLDEHFLYLRDFV 161 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~D~v~id~~-~----~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (192)
.... .....||+|++|.. . +...+.+..+...++|.=+|++-|...+ +.....+
T Consensus 174 al~~------ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------------QdA~~~A 232 (451)
T COG0541 174 ALEK------AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------------QDAVNTA 232 (451)
T ss_pred HHHH------HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------------hHHHHHH
Confidence 1000 01567999999986 2 2234566777899999998877666543 2344566
Q ss_pred HHHHHHh
Q 029536 162 QELNKAL 168 (192)
Q Consensus 162 ~~~~~~~ 168 (192)
++|++.+
T Consensus 233 ~aF~e~l 239 (451)
T COG0541 233 KAFNEAL 239 (451)
T ss_pred HHHhhhc
Confidence 7777665
No 439
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.28 E-value=1.7 Score=35.93 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred CEEEEEccchhHHHHHHHHhC----C---------------CCcEEEEEeCCc--hhHHHHHHHHHHc------------
Q 029536 21 KNTMEIGVFTGYSLLATALAI----P---------------DDGKILALDITK--EHYEKGLPIIQKA------------ 67 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~----~---------------~~~~v~~vD~~~--~~~~~a~~~~~~~------------ 67 (192)
.+||.||.|.|.-...+|..+ . +...++.||+.+ ..++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999998877777766 0 013899999965 3334444433332
Q ss_pred -CC-C--CceEEEeCCchhHHHH-HHhhhhcccccCCCcccEEEEe--------CCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 68 -GV-A--HKIDFREGPALPLLDQ-LIQDVSSTKEKYHGTFDFVFVD--------ADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 68 -~~-~--~~v~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~D~v~id--------~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.. + -+++|.+.|....... +..-+ .....++|-+- ........++..+-..+++|.++++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll------~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLL------GPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHh------ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 00 1 1478888887654221 11000 01234555211 11344567888888999999988886
Q ss_pred Cc
Q 029536 135 NT 136 (192)
Q Consensus 135 d~ 136 (192)
|-
T Consensus 242 DS 243 (315)
T PF11312_consen 242 DS 243 (315)
T ss_pred cC
Confidence 65
No 440
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.24 E-value=4.4 Score=32.70 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=48.5
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
+|.-||+| ..+..++..+. .+.+|+++|.+++..+.+.+ .+. +.....+ .+. -.
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~----~~~------------~~ 56 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTD----LSL------------LK 56 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCC----HhH------------hc
Confidence 45667764 44444444432 24689999999887766543 222 1111111 111 23
Q ss_pred cccEEEEeCCCcCcHHHHHHHHhccCCCeEE
Q 029536 101 TFDFVFVDADKDNYVNYHKRLIELVKVGGVI 131 (192)
Q Consensus 101 ~~D~v~id~~~~~~~~~~~~~~~~L~~gG~l 131 (192)
..|+||+..+.....+.++.+.+.++++.++
T Consensus 57 ~aDlVilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 57 DCDLVILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 5688888776555566777777777776544
No 441
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=88.19 E-value=12 Score=31.84 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|...+|-+.++.....+..+-+++|+......+...+.++.+|+..+.... .....+..+...|. .+.++..+..+
T Consensus 58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~vd~~d~e 135 (391)
T TIGR01328 58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFINMAIPE 135 (391)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence 4566677777888877777777777766555444444455667777654322 22233333444443 34444443222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+-.+|++..+ +......++.+.++.+. |..+++|++..
T Consensus 136 ~l~~~i----------~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 136 EVKAHI----------KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred HHHHhh----------ccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 222221 234578887654 21111123334433333 55777788764
No 442
>PRK10083 putative oxidoreductase; Provisional
Probab=88.17 E-value=7.3 Score=31.81 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=53.7
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHh-CCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALA-IPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
..+..+|+-.|+| .|..+..+|+. ++ ...+++++.+++..+.+++ .|...-+..... .+.+.+...
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~---~~~~~~~~~---- 225 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQE---PLGEALEEK---- 225 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccc---cHHHHHhcC----
Confidence 3445688888854 44455556664 23 3468889998877766554 343211221111 122222111
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
...+|++ +|..-. ...+...++.|+++|.++.-
T Consensus 226 ----g~~~d~v-id~~g~--~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 ----GIKPTLI-IDAACH--PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred ----CCCCCEE-EECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence 2234555 444321 34567778899999988764
No 443
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.16 E-value=12 Score=29.82 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=46.4
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFR 76 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~ 76 (192)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+..-+++.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 3456799999996 4443333333322 47888888653 2445556666665544455555
Q ss_pred eCCchh-HHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 77 EGPALP-LLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.....+ ..+.+ -..||+|+.-.+
T Consensus 108 ~~~i~~~~~~~~-----------~~~~DiVi~~~D 131 (245)
T PRK05690 108 NARLDDDELAAL-----------IAGHDLVLDCTD 131 (245)
T ss_pred eccCCHHHHHHH-----------HhcCCEEEecCC
Confidence 554322 12222 347899876554
No 444
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.09 E-value=12 Score=30.72 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
.+++++-+|.| .|......++.+ +.+|+.+|.+++..+.++ ..+. ++.. . +.+...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~~--~-~~l~~~---------- 207 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPFH--L-SELAEE---------- 207 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eeec--H-HHHHHH----------
Confidence 57899999986 333344444443 469999999977554443 2332 2221 1 122222
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
-..+|+||.-.+. .-.-+...+.+++|++++
T Consensus 208 -l~~aDiVI~t~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 208 -VGKIDIIFNTIPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred -hCCCCEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence 3468999875432 112345567889988765
No 445
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.08 E-value=9.2 Score=32.14 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC---CchhHHHHHHhhhhcc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDVSST 94 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~~ 94 (192)
+..+||-.|+| .|..++.+|+... ..++++++.+++..+.+++ .+...-+..... +..+.+..+.
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~------ 271 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT------ 271 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc------
Confidence 45677777764 4445555666653 2379999988775544443 454211111111 1112222221
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+|+ |..- .....+....+.|+++|.++.-
T Consensus 272 ---~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 ---KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred ---CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 134689776 5422 2234567778889999988753
No 446
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.07 E-value=8.4 Score=32.61 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCC-------------------chhHHHHHHHHHHcCCCCceEEE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT-------------------KEHYEKGLPIIQKAGVAHKIDFR 76 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~ 76 (192)
..+..+|+-+||| .|......+.... -++++.+|.+ ....+.+.+.+.+.+..-+++.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 3466789999997 4444443333323 4789999987 34566666667665433344444
Q ss_pred eCCchh-HHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 77 EGPALP-LLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.....+ ....+ -..+|+|+...+
T Consensus 211 ~~~~~~~~~~~~-----------~~~~D~Vv~~~d 234 (376)
T PRK08762 211 QERVTSDNVEAL-----------LQDVDVVVDGAD 234 (376)
T ss_pred eccCChHHHHHH-----------HhCCCEEEECCC
Confidence 443322 12222 246898875544
No 447
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.02 E-value=12 Score=30.95 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=55.1
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
++.++|-.|+| .|..+..+|+... ..++++++.+++..+.++ +.+...-+.....+..+....+... .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~------~ 245 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDI------T 245 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHH------h
Confidence 55678777754 4555566777653 238999988877655443 3454221211111111111111111 0
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
....+|+++-.... ...+...++.|+++|.++.-
T Consensus 246 ~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 246 GGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 13468987642211 34566778899999988753
No 448
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=87.96 E-value=12 Score=30.52 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=53.1
Q ss_pred CCCEEEEE--c-cchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 19 NAKNTMEI--G-VFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 19 ~~~~ilei--G-~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.+..++-+ | .+.|..+..+|+.. +.++++++.+++..+.+++ .|... ++.....++...+...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~~v~~~----- 207 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEY---VLNSSDPDFLEDLKEL----- 207 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE---EEECCCccHHHHHHHH-----
Confidence 34445443 3 34666777788775 5689999998877766654 44421 2222222222222111
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.....+|+++ |..-. .......+.++++|.++.-
T Consensus 208 -~~~~~~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 208 -IAKLNATIFF-DAVGG---GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred -hCCCCCcEEE-ECCCc---HHHHHHHHhhCCCCEEEEE
Confidence 0124689876 43321 1234456788999987764
No 449
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.95 E-value=2.8 Score=34.59 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=52.8
Q ss_pred EEEEEccchhHHHHHHHHhCCC-CcEEEEEeCCchhHHHHHHH---HH---HcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 22 NTMEIGVFTGYSLLATALAIPD-DGKILALDITKEHYEKGLPI---IQ---KAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~---~~---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
+|.-||+ |.++..++..+.. +..|+.++.+++..+..++. .. ...+..++++. .|..+ ..
T Consensus 2 kI~IiGa--Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~---~~------- 68 (326)
T PRK14620 2 KISILGA--GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDE---VL------- 68 (326)
T ss_pred EEEEECc--CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHH---HH-------
Confidence 4667787 4444444444322 35788899887665544432 11 01111122221 22211 11
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHh-ccCCCeEEE
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIE-LVKVGGVIG 132 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~-~L~~gG~lv 132 (192)
.+..|+||+-.......+.++.+.+ .++++..++
T Consensus 69 ----~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv 103 (326)
T PRK14620 69 ----SDNATCIILAVPTQQLRTICQQLQDCHLKKNTPIL 103 (326)
T ss_pred ----hCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 2467999998776667788888887 888876444
No 450
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.93 E-value=1.9 Score=35.98 Aligned_cols=97 Identities=8% Similarity=-0.054 Sum_probs=54.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHH-HcCCC------CceEEEeCCchhHHHHHHhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQ-KAGVA------HKIDFREGPALPLLDQLIQD 90 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~------~~v~~~~~d~~~~~~~~~~~ 90 (192)
.+..+|.-||+|.-+ ..++..+...+.++....+++..+..++.-. ...+. .++.. ..|.. ..
T Consensus 5 ~~~mkI~IiGaGa~G--~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~----~a--- 74 (341)
T PRK12439 5 KREPKVVVLGGGSWG--TTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFA----EA--- 74 (341)
T ss_pred cCCCeEEEECCCHHH--HHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHH----HH---
Confidence 345678899985444 3334333323457777787777655544210 00111 11111 12221 11
Q ss_pred hhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 91 VSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
-...|+|++-.+.....+.++.+.+.++++..++
T Consensus 75 --------~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 --------ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred --------HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence 2357999998776677888899999998887444
No 451
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=87.85 E-value=15 Score=30.80 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|...++-+.++.......++-+++|+......+...+.++.+|+..+..-. .....+......|. ++.++..+..+
T Consensus 39 ~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~d~~ 116 (369)
T cd00614 39 NPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFVDPDDPE 116 (369)
T ss_pred ChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEeCCCCHH
Confidence 4556667777777776677777777766555555444454566666554322 22233333444443 45555444323
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+..+|++... +......++.+.++.+. |..+++|+++-
T Consensus 117 ~l~~~i----------~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 117 ALEAAI----------KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHhc----------CCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333321 235678887654 22122224444444444 55777788753
No 452
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.84 E-value=8.7 Score=31.49 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=56.4
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEe-CCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFRE-GPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 94 (192)
..+..+++-.|+| .|..+..+|+.. +.++++++.+++..+.+++ .+...-+.... .+....+..+.
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~------ 230 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT------ 230 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh------
Confidence 3455788887753 555666677765 5689999888877665543 34421112111 12222222221
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.+|+++- .... ...+...++.|+++|.++.
T Consensus 231 ----~~~~d~vi~-~~g~--~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 231 ----GGGAHVSVD-ALGI--PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred ----CCCCCEEEE-cCCC--HHHHHHHHHHhhcCCEEEE
Confidence 237998764 3211 3456677889999998775
No 453
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.62 E-value=2.8 Score=34.37 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=52.9
Q ss_pred CEEEEEccc-hhH-HHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccC
Q 029536 21 KNTMEIGVF-TGY-SLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKY 98 (192)
Q Consensus 21 ~~ileiG~g-~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 98 (192)
.+|+-+|+| .|. .+..|++. +..|+.++.+++.++..++ +.|+ .+.........+ ... ++ +..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~-~~~---~~-~~~ 67 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYA-IPA---ET-ADA 67 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeec-cCC---CC-ccc
Confidence 468888986 233 44444443 4579999987655543332 1122 111100000000 000 00 001
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.||+||+-.-..+..+.++.+.+.+.++..+++
T Consensus 68 ~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 68 AEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 35899999876544567788889999999986653
No 454
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=87.61 E-value=9.3 Score=31.19 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred cCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeC---CchhHHHHHHhhhh
Q 029536 18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREG---PALPLLDQLIQDVS 92 (192)
Q Consensus 18 ~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~ 92 (192)
.+..+||-.|+ +.|..+..+|+.. +.+++.+.-+++..+..++.+.+.+...-+..... +....+....
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~---- 218 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP---- 218 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc----
Confidence 45678888764 5777778888876 45555554444222223333444444211111111 1222222221
Q ss_pred cccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 93 STKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 93 ~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.+.+|+|+ |..-. ..+....+.|+++|.++.
T Consensus 219 ------~~~~d~vl-d~~g~---~~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 219 ------GGRPKLAL-NCVGG---KSATELARLLSPGGTMVT 249 (341)
T ss_pred ------CCCceEEE-ECcCc---HhHHHHHHHhCCCCEEEE
Confidence 22689876 44322 123456788999998775
No 455
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.50 E-value=1.7 Score=35.22 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=53.9
Q ss_pred HcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 17 LINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 17 ~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
..+....+|+|...|++|-.|-+. +-.|++||.-+-. +++-. ...|+....|...+-+.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~d---tg~v~h~r~DGfk~~P~---------- 267 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMD---TGQVTHLREDGFKFRPT---------- 267 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhc---ccceeeeeccCcccccC----------
Confidence 445678999999999999988764 6789999987532 22222 25799999999887652
Q ss_pred cCCCcccEEEEeCC
Q 029536 97 KYHGTFDFVFVDAD 110 (192)
Q Consensus 97 ~~~~~~D~v~id~~ 110 (192)
..+.|..++|..
T Consensus 268 --r~~idWmVCDmV 279 (358)
T COG2933 268 --RSNIDWMVCDMV 279 (358)
T ss_pred --CCCCceEEeehh
Confidence 468899999976
No 456
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.42 E-value=11 Score=30.94 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
++.++|-.|+| .|..+..+|+... ..+++.++.+++..+.+++ .+.. .++.....++...+...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~------- 239 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKA------- 239 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHH-------
Confidence 45678887765 5556666777753 2378899888777665543 3432 22222222222222211
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
..+.+|+++ |... ....++.+++.|+++|.++.-
T Consensus 240 ~~~~~d~vi-d~~g--~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 240 AGGGVDAVI-DFVN--NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred hCCCCcEEE-ECCC--CHHHHHHHHHHhhcCCeEEEE
Confidence 023689876 4321 123577788899999988753
No 457
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.42 E-value=13 Score=29.50 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=47.1
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc-------------------hhHHHHHHHHHHcCCCCceEEE
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK-------------------EHYEKGLPIIQKAGVAHKIDFR 76 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~ 76 (192)
..+..+|+-+||| .|...+..+.... -++++.+|.+. ...+.+++.+.+.+..-+++.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3456789999987 4554444333333 47888888653 2345556666665544455555
Q ss_pred eCCchh-HHHHHHhhhhcccccCCCcccEEEEeCCC
Q 029536 77 EGPALP-LLDQLIQDVSSTKEKYHGTFDFVFVDADK 111 (192)
Q Consensus 77 ~~d~~~-~~~~~~~~~~~~~~~~~~~~D~v~id~~~ 111 (192)
...... ....+ -..+|+|+.-.+.
T Consensus 100 ~~~i~~~~~~~~-----------~~~~DlVvd~~D~ 124 (240)
T TIGR02355 100 NAKLDDAELAAL-----------IAEHDIVVDCTDN 124 (240)
T ss_pred eccCCHHHHHHH-----------hhcCCEEEEcCCC
Confidence 443322 22222 3468988765543
No 458
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.39 E-value=8.7 Score=31.43 Aligned_cols=96 Identities=9% Similarity=0.057 Sum_probs=55.9
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+..+||-.|+| .|..+..+|+.. +.+++.++.+++..+.+++ .+.. .++.....++...+..
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~------ 225 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQE------ 225 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHh------
Confidence 3455688888754 555666677765 4679999998776665543 3432 1222221122222221
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|+++ +.. .....+...++.|+++|.++.
T Consensus 226 ---~~~~d~vi-~~~--g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 226 ---LGGAKLIL-ATA--PNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred ---cCCCCEEE-ECC--CchHHHHHHHHHcccCCEEEE
Confidence 13578876 331 123457778889999998875
No 459
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.15 E-value=9.7 Score=30.80 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=52.9
Q ss_pred CEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHc--------CCC---------CceEEEeCCchhH
Q 029536 21 KNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKA--------GVA---------HKIDFREGPALPL 83 (192)
Q Consensus 21 ~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 83 (192)
++|.-||+|.=+.+...+-+.. +..|+.+|.+++.++.+++.+.+. .+. .++++ ..|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~--- 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDL--- 78 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCH---
Confidence 5688888864333332221212 568999999999888887654321 110 12222 1221
Q ss_pred HHHHHhhhhcccccCCCcccEEEEeCCCc--CcHHHHHHHHhccCCCeEEE
Q 029536 84 LDQLIQDVSSTKEKYHGTFDFVFVDADKD--NYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~D~v~id~~~~--~~~~~~~~~~~~L~~gG~lv 132 (192)
+.. -..-|+|+...+.. ....+++.+.+.++++.+|+
T Consensus 79 -~~a-----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 79 -AEA-----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred -HHH-----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 111 23468888765522 34566777777777776654
No 460
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=87.05 E-value=1.3 Score=29.77 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCccCCccccCCC--C--CCchhhhhhHHHHHHHHHHHhhcCCC
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTLWGGSVVAPP--D--ADLDEHFLYLRDFVQELNKALAVDPR 173 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (192)
....+|++++|....-..+.+..+...++-||++++--.-+......+. . -.+..+.......+++|.+.+.++++
T Consensus 8 LG~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~ 87 (92)
T PF08351_consen 8 LGQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPG 87 (92)
T ss_dssp TT--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCSTT
T ss_pred hCCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHCcC
Confidence 3678999999998777788999999999999988762111110000000 0 00011112345567788888887776
Q ss_pred ee
Q 029536 174 IE 175 (192)
Q Consensus 174 ~~ 175 (192)
+.
T Consensus 88 i~ 89 (92)
T PF08351_consen 88 II 89 (92)
T ss_dssp S-
T ss_pred Cc
Confidence 53
No 461
>PRK05599 hypothetical protein; Provisional
Probab=87.05 E-value=7.9 Score=30.27 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=49.1
Q ss_pred EEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh------HHHHHHhhhhccc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQDVSSTK 95 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~~~~ 95 (192)
++|-+|++. +.+..+++.+..+.+|+.++.+++.++...+.+++.+- .++.++..|..+ ..+...+.
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~----- 74 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQEL----- 74 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHh-----
Confidence 567777654 45666666555568899999888777766666655442 346777777544 22222222
Q ss_pred ccCCCcccEEEEeCC
Q 029536 96 EKYHGTFDFVFVDAD 110 (192)
Q Consensus 96 ~~~~~~~D~v~id~~ 110 (192)
.++.|.++..+.
T Consensus 75 ---~g~id~lv~nag 86 (246)
T PRK05599 75 ---AGEISLAVVAFG 86 (246)
T ss_pred ---cCCCCEEEEecC
Confidence 467899886543
No 462
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=87.04 E-value=10 Score=30.02 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=58.1
Q ss_pred hHcCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhc
Q 029536 16 KLINAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSS 93 (192)
Q Consensus 16 ~~~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 93 (192)
...+..++|-.|+ +.|..+..+++.. +.++++++.+++..+.++ +.+.. .++..+...+...+...
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~--- 200 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELAR----AAGAD---HVINYRDEDFVERVREI--- 200 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HCCCC---EEEeCCchhHHHHHHHH---
Confidence 3445678888884 5777778888876 567888888877665543 34431 22222222222222111
Q ss_pred ccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 94 TKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 94 ~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.....+|+++- .... .....+++.|+++|.++.
T Consensus 201 ---~~~~~~d~vl~-~~~~---~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 201 ---TGGRGVDVVYD-GVGK---DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred ---cCCCCeeEEEE-CCCc---HhHHHHHHhhccCcEEEE
Confidence 01346898874 3222 345677888999998774
No 463
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.01 E-value=10 Score=27.90 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=51.9
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
+|-=||+ |..+..+++.+. .+..|+..|.+++..+...+ .+ ++. ..+..+..+
T Consensus 3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g----~~~-~~s~~e~~~--------------- 56 (163)
T PF03446_consen 3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG----AEV-ADSPAEAAE--------------- 56 (163)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT----EEE-ESSHHHHHH---------------
T ss_pred EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh----hhh-hhhhhhHhh---------------
Confidence 4445666 666666666653 35789999999876654443 22 222 233333322
Q ss_pred cccEEEEeCCC-cCcHHHHHH--HHhccCCCeEEEEeCc
Q 029536 101 TFDFVFVDADK-DNYVNYHKR--LIELVKVGGVIGYDNT 136 (192)
Q Consensus 101 ~~D~v~id~~~-~~~~~~~~~--~~~~L~~gG~lv~~d~ 136 (192)
..|+|++--.. ....+.+.. +.+.|++|.+++-..+
T Consensus 57 ~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp HBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred cccceEeecccchhhhhhhhhhHHhhccccceEEEecCC
Confidence 34988876543 445667776 8888999998885443
No 464
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.00 E-value=16 Score=30.20 Aligned_cols=85 Identities=19% Similarity=0.066 Sum_probs=50.1
Q ss_pred CCCEEEEEccchhHHHHHHHHhC-CCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhccc
Q 029536 19 NAKNTMEIGVFTGYSLLATALAI-PDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSSTK 95 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 95 (192)
+.+.+|-+|+ +|..+..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+. ...+...+
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~---- 79 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRA---- 79 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHH----
Confidence 4567888885 444555555444 235789999998877776666665544 3677778875432 22221110
Q ss_pred ccCCCcccEEEEeCC
Q 029536 96 EKYHGTFDFVFVDAD 110 (192)
Q Consensus 96 ~~~~~~~D~v~id~~ 110 (192)
....+++|.++....
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 001357898876543
No 465
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.94 E-value=17 Score=30.29 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccccc
Q 029536 19 NAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 19 ~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+..+++-.|+| .|..+..+|+.. +.+++.++.+++..+.+. ++.|.. .+ +...+. +.+...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga~-~~-i~~~~~-~~~~~~---------- 241 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGAD-DY-LVSSDA-AEMQEA---------- 241 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCCc-EE-ecCCCh-HHHHHh----------
Confidence 45678777654 566667777775 457888887766543332 234542 11 111121 222221
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCc
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNT 136 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~ 136 (192)
...+|++| |..- ....++.+.+.++++|.++.-..
T Consensus 242 -~~~~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 242 -ADSLDYII-DTVP--VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -cCCCcEEE-ECCC--chHHHHHHHHHhccCCEEEEECC
Confidence 23588875 3321 12456777889999998876443
No 466
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.93 E-value=3.1 Score=33.51 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHHHHHHHHhH---cCCCEEEEEccchhHHHHHHHHhCC----CCcEEEEEeCCchhHHHHHHHHHHc
Q 029536 7 EAQFFSMLLKL---INAKNTMEIGVFTGYSLLATALAIP----DDGKILALDITKEHYEKGLPIIQKA 67 (192)
Q Consensus 7 ~~~~l~~l~~~---~~~~~ileiG~g~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~ 67 (192)
++.++..+... .+...++|.|||-|..+.+++..++ ....++.||...... ++...+...
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~ 69 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD 69 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc
Confidence 34455555542 3456899999999999999999884 247899999865333 444445443
No 467
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.91 E-value=6.6 Score=33.85 Aligned_cols=115 Identities=11% Similarity=0.156 Sum_probs=62.5
Q ss_pred HHHHHHhHcCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCch--------hHHHHHHHHHHcCCC----CceEEE
Q 029536 10 FFSMLLKLINAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKE--------HYEKGLPIIQKAGVA----HKIDFR 76 (192)
Q Consensus 10 ~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~--------~~~~a~~~~~~~~~~----~~v~~~ 76 (192)
-+...+....+++++-||+ |..++.+|..+. .+.+|+.++..+. ..+..++.+++.|+. .++.-+
T Consensus 138 ~l~~~l~~~~~~~vvViGg--G~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 138 AIDQFIKANQVDKALVVGA--GYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred HHHHHHhhcCCCEEEEECC--CHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 3444444456789999986 567777776553 2468999887543 334555666665542 111111
Q ss_pred eCCchhHHHHHHhhhhcccccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeCcc
Q 029536 77 EGPALPLLDQLIQDVSSTKEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDNTL 137 (192)
Q Consensus 77 ~~d~~~~~~~~~~~~~~~~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d~~ 137 (192)
.++...+ . +...-.+|.|++........++++..--.+.++|.+.+|+.+
T Consensus 216 ~~~~v~~-~----------~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 216 NGNEVTF-K----------SGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred eCCEEEE-C----------CCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 1111000 0 001236899888766444455565542234567877777654
No 468
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=86.74 E-value=11 Score=31.31 Aligned_cols=99 Identities=20% Similarity=0.175 Sum_probs=55.5
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
.+..++|-.|+| .|..+..+|+... ...+++++.+++..+.+++ .+.. .++..+..++...+...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~------ 251 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREI------ 251 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHH------
Confidence 445677776664 6666677777753 2348888888776665543 3431 22222211222222111
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.....+|+|+ |.... ......+++.|+++|.++.
T Consensus 252 ~~~~~~d~vl-d~vg~--~~~~~~~~~~l~~~G~~v~ 285 (367)
T cd08263 252 TGGRGVDVVV-EALGK--PETFKLALDVVRDGGRAVV 285 (367)
T ss_pred hCCCCCCEEE-EeCCC--HHHHHHHHHHHhcCCEEEE
Confidence 0135699887 44222 1356777889999998875
No 469
>PRK06153 hypothetical protein; Provisional
Probab=86.63 E-value=16 Score=31.25 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=26.6
Q ss_pred HhHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCC
Q 029536 15 LKLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT 53 (192)
Q Consensus 15 ~~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~ 53 (192)
....+..+|+-+||| +|...+..+...+ -++++.+|.+
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D 209 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGD 209 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCC
Confidence 445567899999997 5655555544444 5789999875
No 470
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.61 E-value=8.1 Score=30.15 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=49.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH------HHHHHhh
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQD 90 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~ 90 (192)
.+.+++|-+|++ |..+..+++.+. .+.+|+.++.+++..+...+.+...+ .++.++..|..+. +......
T Consensus 7 ~~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356889998864 344555554442 35789999998877766666555443 4577777775432 2222211
Q ss_pred hhcccccCCCcccEEEEeC
Q 029536 91 VSSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~ 109 (192)
.++.|.++..+
T Consensus 84 --------~g~id~lv~~a 94 (253)
T PRK05867 84 --------LGGIDIAVCNA 94 (253)
T ss_pred --------hCCCCEEEECC
Confidence 35789888654
No 471
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.56 E-value=12 Score=28.12 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=41.5
Q ss_pred EEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc------------------hhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 22 NTMEIGVF-TGYSLLATALAIPDDGKILALDITK------------------EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 22 ~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|+-+||| .|......+.... -++++.+|.+. ...+.+++.+.+.+..-+++.+......
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 47888987 3443333222222 46899999875 2344555566665544455555444322
Q ss_pred -HHHHHHhhhhcccccCCCcccEEEEeCC
Q 029536 83 -LLDQLIQDVSSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~D~v~id~~ 110 (192)
.++.+ -..+|+|+.-.+
T Consensus 80 ~~~~~~-----------l~~~DlVi~~~d 97 (174)
T cd01487 80 NNLEGL-----------FGDCDIVVEAFD 97 (174)
T ss_pred hhHHHH-----------hcCCCEEEECCC
Confidence 12222 346898876433
No 472
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.50 E-value=12 Score=30.13 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=52.3
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCC---CceEEEeCCchhHHHHHHhhhhccccc
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVA---HKIDFREGPALPLLDQLIQDVSSTKEK 97 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~ 97 (192)
+|.-+|+|. .+..++..+. .+..|+.++.+++..+..++ .++. ..... ..........
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~----------- 63 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE----------- 63 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-----------
Confidence 577888853 3333333332 24679999987766554433 2321 11100 0000000111
Q ss_pred CCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 98 YHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 98 ~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|+|++-.........++.+.+.+.++..|++
T Consensus 64 -~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 64 -LGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -cCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 25789999987766678888888888888865553
No 473
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.50 E-value=4.8 Score=33.04 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=27.1
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|+||+-.......+.++.+.+++++++.++.
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 35799999876655567788888889999987763
No 474
>PRK07050 cystathionine beta-lyase; Provisional
Probab=86.44 E-value=19 Score=30.60 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhH-HHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHY-EKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.....+.++-..+|+......+...++++.+|+..+..-... ..........|. ++.++..+..+
T Consensus 64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~vd~~~~~ 141 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFYDPLIGA 141 (394)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEECCCCHH
Confidence 466777777788888888888877777776666554456577888877654332 223334444554 45555332222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCC-eEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVG-GVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~d~~~ 138 (192)
.++... ..+-.+|++..+ +......++.+.+..+.. -.+++|+++.
T Consensus 142 ~l~~~i----------~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 142 GIADLI----------QPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred HHHHhc----------CCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence 222221 234578887654 223444556665555544 4677787753
No 475
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.37 E-value=5.9 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 99 HGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 99 ~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
...+|+|++..-.-...+.++.+.+.+++...|++
T Consensus 65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence 45899999987766678899999999999986664
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.31 E-value=8.2 Score=33.89 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=52.0
Q ss_pred cCCCEEEEEccch-hHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 18 INAKNTMEIGVFT-GYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 18 ~~~~~ileiG~g~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
...++++-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. +.. + ++.+
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~----leel--------- 306 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--T----LEDV--------- 306 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--c----HHHH---------
Confidence 4678999999873 44444444444 5689999998875433322 122 221 2 2222
Q ss_pred cCCCcccEEEEeCCCcCcHHHH-HHHHhccCCCeEEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYH-KRLIELVKVGGVIGY 133 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~-~~~~~~L~~gG~lv~ 133 (192)
-...|+|+..... ...+ ...+..+|||++|+-
T Consensus 307 --l~~ADIVI~atGt---~~iI~~e~~~~MKpGAiLIN 339 (476)
T PTZ00075 307 --VETADIFVTATGN---KDIITLEHMRRMKNNAIVGN 339 (476)
T ss_pred --HhcCCEEEECCCc---ccccCHHHHhccCCCcEEEE
Confidence 2357999875432 2334 367789999999984
No 477
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.29 E-value=16 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=23.6
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCC
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT 53 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~ 53 (192)
..+..+|+-+||| .|..+...+.... -++++.+|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 4466789999997 4554444333322 3789999976
No 478
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.27 E-value=9.2 Score=30.03 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=50.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH--HHHHHhhhhcc
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL--LDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~ 94 (192)
.+.+.+|-+|++ |..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++..|..+. ...+.+++..
T Consensus 6 l~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~- 83 (265)
T PRK07062 6 LEGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA- 83 (265)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH-
Confidence 356788888865 444555555442 36789999999887766665555432223677777776442 1111111000
Q ss_pred cccCCCcccEEEEeC
Q 029536 95 KEKYHGTFDFVFVDA 109 (192)
Q Consensus 95 ~~~~~~~~D~v~id~ 109 (192)
..++.|.++..+
T Consensus 84 ---~~g~id~li~~A 95 (265)
T PRK07062 84 ---RFGGVDMLVNNA 95 (265)
T ss_pred ---hcCCCCEEEECC
Confidence 135789887654
No 479
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=86.26 E-value=20 Score=30.48 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc-hhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|...++=+.++.....+.++-..+|+......+...+.++.+|+..+... .......+.+...|. ++.++..+..+
T Consensus 60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 137 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVDLTDLD 137 (390)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence 455666666777777777787776666555544443444456776655432 233334444555554 46665544333
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~ 137 (192)
.++... ..+-.+|++..+ +......++.+.++.+. |-.+++|+++
T Consensus 138 ~l~~~i----------~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 138 AWRAAV----------RPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHhc----------CcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 333321 334568887644 22122223444444444 5577778765
No 480
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.13 E-value=4.9 Score=34.86 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=46.5
Q ss_pred EEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccccCCC
Q 029536 22 NTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKEKYHG 100 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 100 (192)
+|.-|| |.|..+..++..+. .+..|++++.+++.... .....+. .. ..+..+. -.
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~---------------~~ 57 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA---------------AK 57 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH---------------hc
Confidence 466676 23444555554442 14579999988765421 1222232 11 1121111 23
Q ss_pred cccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 101 TFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 101 ~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
..|+|++..+.....+.++.+.+.+++|.+++
T Consensus 58 ~aDvVIlavp~~~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 58 DADIVIISVPINVTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred cCCEEEEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence 46888877665555666777777777776554
No 481
>PLN02702 L-idonate 5-dehydrogenase
Probab=86.01 E-value=16 Score=30.34 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=57.9
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEE--eCCchhHHHHHHhhhhcc
Q 029536 18 INAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFR--EGPALPLLDQLIQDVSST 94 (192)
Q Consensus 18 ~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~ 94 (192)
.+..++|-+|+| .|..+..+|+... ...+++++.+++..+.+++ .+....+.+. ..+..+.+..+...
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~---- 250 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA---- 250 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh----
Confidence 356688888764 4666777777754 3458888888766554443 4442222221 12222222222100
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEeC
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYDN 135 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~d 135 (192)
....+|+|+- ..- ....+...++.|+++|.++.-.
T Consensus 251 ---~~~~~d~vid-~~g--~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 251 ---MGGGIDVSFD-CVG--FNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred ---cCCCCCEEEE-CCC--CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346898754 321 1345778889999999887543
No 482
>PRK08328 hypothetical protein; Provisional
Probab=85.91 E-value=15 Score=28.85 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=22.9
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCC
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDIT 53 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~ 53 (192)
..+..+|+-+||| .|...+..+.... -++++.+|.+
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D 60 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQ 60 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 3456789999997 3544444333333 4789999854
No 483
>PRK07680 late competence protein ComER; Validated
Probab=85.74 E-value=6.4 Score=31.57 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=49.3
Q ss_pred EEEEEccchhHHHHHHHHhCCCC-----cEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 22 NTMEIGVFTGYSLLATALAIPDD-----GKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
+|.=||+ |..+..++..+... ..++.++.+++..+...+. . ..+.. ..+..+..
T Consensus 2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~---~g~~~-~~~~~~~~------------ 60 (273)
T PRK07680 2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---Y---PGIHV-AKTIEEVI------------ 60 (273)
T ss_pred EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---c---CCeEE-ECCHHHHH------------
Confidence 3666776 55555555443211 3688899987665443321 1 12332 22322221
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
...|+||+-..+....+.++.+.+.++++.+++
T Consensus 61 ---~~aDiVilav~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 61 ---SQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred ---HhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence 245888887765556677777777887777554
No 484
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.70 E-value=9.9 Score=29.42 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHhHcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHh
Q 029536 11 FSMLLKLINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQ 89 (192)
Q Consensus 11 l~~l~~~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 89 (192)
+........++++|-+|+. +|..+ |..+....+|+.+|++|.+.. + ++++++|..+ +..
T Consensus 36 i~~~~~~~E~~~vli~G~YltG~~~---a~~Ls~~~~vtv~Di~p~~r~-----~----lp~~v~Fr~~-----~~~--- 95 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYLTGNYT---AQMLSKADKVTVVDIHPFMRG-----F----LPNNVKFRNL-----LKF--- 95 (254)
T ss_pred hhhhhcccCcceEEEEEeeehhHHH---HHHhcccceEEEecCCHHHHh-----c----CCCCccHhhh-----cCC---
Confidence 3333445678899999986 45444 444444789999999985432 1 3356666544 111
Q ss_pred hhhcccccCCCcccEEEEeCCCc-CcHHHHHHHHhccCCCeEEEE
Q 029536 90 DVSSTKEKYHGTFDFVFVDADKD-NYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~~~~-~~~~~~~~~~~~L~~gG~lv~ 133 (192)
..+.+|+|+=-.... -.+++ ++.++|+-.|+=
T Consensus 96 --------~~G~~DlivDlTGlGG~~Pe~----L~~fnp~vfiVE 128 (254)
T COG4017 96 --------IRGEVDLIVDLTGLGGIEPEF----LAKFNPKVFIVE 128 (254)
T ss_pred --------CCCceeEEEeccccCCCCHHH----HhccCCceEEEE
Confidence 267889975322221 22333 345677666553
No 485
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.60 E-value=1.5 Score=37.28 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCchhHHHHH
Q 029536 9 QFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGL 61 (192)
Q Consensus 9 ~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 61 (192)
++...++...+..+||-|.+ .|..++.++..-| .+|++||+||.+....+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItS-aG~N~L~yL~~~P--~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITS-AGCNALDYLLAGP--KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHHHhCCCCCCeEEEEcc-CCchHHHHHhcCC--ceEEEEeCCHHHHHHHH
Confidence 44556667777889999965 4555555554433 79999999998765544
No 486
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.53 E-value=17 Score=29.08 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCEEEEEccch-hHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh------HHHHHHhh
Q 029536 19 NAKNTMEIGVFT-GYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQD 90 (192)
Q Consensus 19 ~~~~ileiG~g~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~ 90 (192)
+.+.+|-+|++. ++.+..+++.+. .+.+|+.++.+.+..+..++...+.+. . .++..|..+ ..+...++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999752 344555554442 257888888875433333433333332 2 456666543 22222222
Q ss_pred hhcccccCCCcccEEEEeC
Q 029536 91 VSSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 91 ~~~~~~~~~~~~D~v~id~ 109 (192)
.+++|+++..+
T Consensus 81 --------~g~iDilVnnA 91 (274)
T PRK08415 81 --------LGKIDFIVHSV 91 (274)
T ss_pred --------cCCCCEEEECC
Confidence 46789887654
No 487
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=85.32 E-value=23 Score=30.50 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-..++........+-.++|+......+...+.++.+|+..+..-. ........+...+. .+.++..+..+
T Consensus 57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d~~d~e 134 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAAHDDIA 134 (425)
T ss_pred CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEECCCCHH
Confidence 4666777788888777777777777766555555444444667777665322 22222222222222 34444433223
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.+.. ..+..+|++..+ +......++.+.++.+. |-.+++|++..
T Consensus 135 ~le~ai----------~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 135 ALEALI----------DERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred HHHHHh----------ccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 333322 234568887643 11111113333333333 55677788764
No 488
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=85.22 E-value=11 Score=30.57 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=57.3
Q ss_pred cCCCEEEEEcc--chhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 18 INAKNTMEIGV--FTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~--g~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.+..++|-.|. +.|..+..+++.. +.++++++.+++..+.+++. .+.. .++.....++...+...
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~v~~~----- 210 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFD---AAINYKTPDLAEALKEA----- 210 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCc---eEEecCChhHHHHHHHh-----
Confidence 34578888773 5777778888875 56899998887766555442 3331 22222222222222211
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+++ |..- ...++.+++.++++|.++.
T Consensus 211 --~~~~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 211 --APDGIDVYF-DNVG---GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred --ccCCceEEE-Ecch---HHHHHHHHHhcCCCceEEE
Confidence 134689876 4422 2356777889999998774
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=85.19 E-value=8.1 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.0
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITK 54 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~ 54 (192)
..+..+|+-+|+| .|.|+...+.... -++++.||.+.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsG-ig~itlID~D~ 64 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSG-IGRITLIDMDD 64 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcC-CCeEEEEeccc
Confidence 4456788888875 5666666544333 47899999864
No 490
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=84.96 E-value=25 Score=30.56 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCc-hhHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITK-EHYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++.....+..+-.++|++.....+...+.++.+|+..+..- .........+.+.|. .+.++. +..+
T Consensus 68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd-d~~d 144 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGI--EVSFVE-DPDD 144 (436)
T ss_pred CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeE--EEEEEC-CCCC
Confidence 466667777788878788888888888876666655555566766654321 112222233333443 344442 2211
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCCCe-EEEEeCcc
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKVGG-VIGYDNTL 137 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~d~~ 137 (192)
++.+.+. -..+-.+|++... +......++.+.++.+..| .+++|++.
T Consensus 145 -~e~l~~a-------i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 145 -LDAWRAA-------VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred -HHHHHHh-------CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 2222211 0234467877654 2222223344444444444 67777765
No 491
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.88 E-value=12 Score=29.05 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=50.6
Q ss_pred CCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH------HHHHHhhh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDV 91 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 91 (192)
+.+++|-+|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+...+ .++.++..|..+. ++.....
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~- 81 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA- 81 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence 4678888886 4555555555442 35789999998877766666665543 4688888887532 2222111
Q ss_pred hcccccCCCcccEEEEeC
Q 029536 92 SSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~ 109 (192)
.+++|.++..+
T Consensus 82 -------~g~id~li~~a 92 (253)
T PRK06172 82 -------YGRLDYAFNNA 92 (253)
T ss_pred -------hCCCCEEEECC
Confidence 35789888654
No 492
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.87 E-value=8.6 Score=31.06 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=51.7
Q ss_pred EEEEEccchhHHHHHHHHhCC-----CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcccc
Q 029536 22 NTMEIGVFTGYSLLATALAIP-----DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTKE 96 (192)
Q Consensus 22 ~ileiG~g~G~~~~~la~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 96 (192)
+|.=|||| ..+..++..+- ...++++.|.+++..+.+.+ +.+ ++. ..+..+..
T Consensus 4 ~IgfIG~G--~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g----~~~-~~~~~e~~------------ 61 (272)
T PRK12491 4 QIGFIGCG--NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG----ITI-TTNNNEVA------------ 61 (272)
T ss_pred eEEEECcc--HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC----cEE-eCCcHHHH------------
Confidence 57778874 45555554331 12469999998866544332 223 222 22332221
Q ss_pred cCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEE
Q 029536 97 KYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIG 132 (192)
Q Consensus 97 ~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv 132 (192)
..-|+||+...+....+.++.+.+.++++.+++
T Consensus 62 ---~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvI 94 (272)
T PRK12491 62 ---NSADILILSIKPDLYSSVINQIKDQIKNDVIVV 94 (272)
T ss_pred ---hhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEE
Confidence 235999988777777888888877787775554
No 493
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=84.81 E-value=13 Score=30.98 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
..+..++|-.|+| .|..+..+|+... ..++++++.+++..+.++ ..+.. .++.....++...+...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~----~~g~~---~vv~~~~~~~~~~l~~~----- 246 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELAR----RFGAT---HTVNASEDDAVEAVRDL----- 246 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHH----HhCCe---EEeCCCCccHHHHHHHH-----
Confidence 3456788887764 5667777887753 234888888877665553 23431 22222211222222110
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
.....+|+++ |.... ...+....+.|+++|.++.
T Consensus 247 -~~~~~vd~vl-d~~~~--~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 247 -TDGRGADYAF-EAVGR--AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred -cCCCCCCEEE-EcCCC--hHHHHHHHHHhhcCCeEEE
Confidence 0134689765 43221 2456777888999998775
No 494
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.81 E-value=17 Score=28.47 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=44.7
Q ss_pred cCCCEEEEEccch-hHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchh------HHHHHHh
Q 029536 18 INAKNTMEIGVFT-GYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALP------LLDQLIQ 89 (192)
Q Consensus 18 ~~~~~ileiG~g~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~ 89 (192)
.+.+.+|-.|.+. +..+..+++.+. .+.+|+.++.+.+..+. +++.. ..++.++..|..+ .++...+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLV-DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhc-cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 3568899988763 455556555542 36788888776432222 22221 1356777777643 2222222
Q ss_pred hhhcccccCCCcccEEEEeC
Q 029536 90 DVSSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 90 ~~~~~~~~~~~~~D~v~id~ 109 (192)
+ .+++|+++..+
T Consensus 80 ~--------~g~iD~lv~nA 91 (252)
T PRK06079 80 R--------VGKIDGIVHAI 91 (252)
T ss_pred H--------hCCCCEEEEcc
Confidence 2 36789887654
No 495
>PRK07503 methionine gamma-lyase; Provisional
Probab=84.73 E-value=22 Score=30.37 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEEccchhHHHHHHHHhCCCCcEEEEEeCCch-hHHHHHHHHHHcCCCCceEEEeCCchh
Q 029536 4 SPDEAQFFSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKE-HYEKGLPIIQKAGVAHKIDFREGPALP 82 (192)
Q Consensus 4 ~~~~~~~l~~l~~~~~~~~ileiG~g~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 82 (192)
+|....|-+.++........+-+++|+......+...+.++.+|+.....-. .....+..+...|. ++.++..+..+
T Consensus 64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~ 141 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVDLTDPA 141 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeCCCCHH
Confidence 4556666677777777666766666665544444334455667776544221 11222333444443 34444333222
Q ss_pred HHHHHHhhhhcccccCCCcccEEEEeCC--CcCcHHHHHHHHhccCC-CeEEEEeCccC
Q 029536 83 LLDQLIQDVSSTKEKYHGTFDFVFVDAD--KDNYVNYHKRLIELVKV-GGVIGYDNTLW 138 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~D~v~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~d~~~ 138 (192)
.+.... ..+-.+|++..+ +......++.+.++.+. |..+++|+++.
T Consensus 142 ~l~~~i----------~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 142 ALKAAI----------SDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred HHHHhc----------CccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 232221 234578887533 11111123333333333 55777788764
No 496
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.67 E-value=20 Score=29.09 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred HcCCCEEEEEccc-hhHHHHHHHHhCCCCcE-EEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhcc
Q 029536 17 LINAKNTMEIGVF-TGYSLLATALAIPDDGK-ILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSST 94 (192)
Q Consensus 17 ~~~~~~ileiG~g-~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 94 (192)
..+..++|-+|+| .|..+..+|+.. +.+ ++.++.+++..+.+++ .+.. .++..+....... ...
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~-~~~---- 222 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQ-KED---- 222 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHH-HHh----
Confidence 3456788888865 466677777775 344 8888888876665533 3432 2333222222111 100
Q ss_pred cccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEE
Q 029536 95 KEKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGY 133 (192)
Q Consensus 95 ~~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~ 133 (192)
....+|+++-... ....+....+.|+++|.++.
T Consensus 223 ---~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 ---NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred ---cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence 1457899874221 13456677888999998875
No 497
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.45 E-value=18 Score=29.08 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=55.2
Q ss_pred cCCCEEEEEccc--hhHHHHHHHHhCCCCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhHHHHHHhhhhccc
Q 029536 18 INAKNTMEIGVF--TGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDVSSTK 95 (192)
Q Consensus 18 ~~~~~ileiG~g--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 95 (192)
.+..+++-.|.+ .|..+..++... +.+++.++.+++..+.++. .+.. . .+.....+....+...
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~--~-~~~~~~~~~~~~~~~~----- 230 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGAD--Y-VIDYRKEDFVREVREL----- 230 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--e-EEecCChHHHHHHHHH-----
Confidence 456788888764 666767777664 5678888888776555433 3331 1 1111111222222111
Q ss_pred ccCCCcccEEEEeCCCcCcHHHHHHHHhccCCCeEEEEe
Q 029536 96 EKYHGTFDFVFVDADKDNYVNYHKRLIELVKVGGVIGYD 134 (192)
Q Consensus 96 ~~~~~~~D~v~id~~~~~~~~~~~~~~~~L~~gG~lv~~ 134 (192)
.....+|+++-... ...++.+++.++++|.++.-
T Consensus 231 -~~~~~~d~~i~~~g----~~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 231 -TGKRGVDVVVEHVG----AATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred -hCCCCCcEEEECCc----HHHHHHHHHHhhcCCEEEEE
Confidence 01346898775332 23466777888999977753
No 498
>PRK09242 tropinone reductase; Provisional
Probab=84.43 E-value=15 Score=28.69 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=49.8
Q ss_pred CCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCchhH------HHHHHhhh
Q 029536 19 NAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPL------LDQLIQDV 91 (192)
Q Consensus 19 ~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~ 91 (192)
+.+.+|-+|+. |..+..+++.+. .+.+|+.++.+++..+...+.+....-..++.++..|..+. +......
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~- 85 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH- 85 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence 46788888874 344444444432 35789999988877666655554432224677888886542 2222222
Q ss_pred hcccccCCCcccEEEEeCC
Q 029536 92 SSTKEKYHGTFDFVFVDAD 110 (192)
Q Consensus 92 ~~~~~~~~~~~D~v~id~~ 110 (192)
.+++|.++..+.
T Consensus 86 -------~g~id~li~~ag 97 (257)
T PRK09242 86 -------WDGLHILVNNAG 97 (257)
T ss_pred -------cCCCCEEEECCC
Confidence 457899876653
No 499
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.30 E-value=3.5 Score=29.68 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=29.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCCC--CcEEEEEeCCchhHHHHHHHH
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIPD--DGKILALDITKEHYEKGLPII 64 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~ 64 (192)
.++++++-+|+ |..+..++..+.. ...++.+|.+++..+...+.+
T Consensus 17 ~~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 45689999998 4566666554432 357999999887665544433
No 500
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=84.22 E-value=13 Score=28.78 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=50.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHhCC-CCcEEEEEeCCchhHHHHHHHHHHcCCCCceEEEeCCch--------hHHHHHH
Q 029536 18 INAKNTMEIGVFTGYSLLATALAIP-DDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPAL--------PLLDQLI 88 (192)
Q Consensus 18 ~~~~~ileiG~g~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--------~~~~~~~ 88 (192)
.+.+++|-+|+ +|..+..+++.+. .+.+|++++.+++..+...+.+...+. .++.++..|.. .....+.
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence 46678898885 5666666665543 256899999998776665555555432 35666666552 1222222
Q ss_pred hhhhcccccCCCcccEEEEeC
Q 029536 89 QDVSSTKEKYHGTFDFVFVDA 109 (192)
Q Consensus 89 ~~~~~~~~~~~~~~D~v~id~ 109 (192)
+. .++.|.|+..+
T Consensus 88 ~~--------~~~id~vi~~A 100 (247)
T PRK08945 88 EQ--------FGRLDGVLHNA 100 (247)
T ss_pred HH--------hCCCCEEEECC
Confidence 22 35789888654
Done!