Query 029537
Match_columns 192
No_of_seqs 144 out of 1045
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dma_A Exopolyphosphatase-rela 99.6 9.8E-16 3.4E-20 134.7 9.6 150 4-166 149-320 (343)
2 3dev_A SH1221; alpha-beta prot 99.6 1.8E-15 6E-20 132.0 6.5 157 4-175 130-306 (320)
3 2zxr_A Single-stranded DNA spe 97.9 2.9E-05 9.8E-10 73.6 8.0 66 100-175 342-412 (666)
4 2haw_A Manganese-dependent ino 80.0 2.6 8.9E-05 35.4 5.5 43 4-48 123-170 (309)
5 3dev_A SH1221; alpha-beta prot 73.0 1.5 5E-05 37.5 1.9 49 11-64 157-209 (320)
6 2eb0_A Manganese-dependent ino 65.5 8.9 0.00031 32.0 5.3 44 4-48 113-168 (307)
7 3dma_A Exopolyphosphatase-rela 62.0 3.7 0.00013 35.3 2.3 50 11-65 176-230 (343)
8 1wpn_A Manganese-dependent ino 35.0 24 0.00082 26.9 2.8 40 4-45 123-164 (188)
9 2xvc_A ESCRT-III, SSO0910; cel 22.8 10 0.00034 24.7 -1.2 29 136-175 19-47 (59)
10 3g98_A Alanyl-tRNA synthetase; 22.4 37 0.0013 23.9 1.7 47 128-174 46-102 (111)
No 1
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=99.62 E-value=9.8e-16 Score=134.66 Aligned_cols=150 Identities=16% Similarity=0.091 Sum_probs=98.0
Q ss_pred HHHHHHhCcc-ccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029537 4 VLKYIEDMDL-RRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK 72 (192)
Q Consensus 4 lv~~i~d~Dl-wrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~ 72 (192)
+.++++..+- +..+...++.+++++ ||..|.+ ..++|+.++ +|++.+.+ ..+.......+ .++...
T Consensus 149 v~~l~~~~~~~~~i~~~~At~L~~GI~tDTg~F~~-~~Tt~~t~~aaa~L~~~Gad~~~i~~~l~~~~s~~~--~~l~~~ 225 (343)
T 3dma_A 149 VFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTY-NSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESR--LRLMGY 225 (343)
T ss_dssp HHHHHHHTTCGGGCCHHHHHHHHHHHHHHTTTTTS-SCCCHHHHHHHHHHHTTTCCHHHHHHHHHSCCCHHH--HHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHhccCCHHH--HHHHHH
Confidence 4566666551 344555677788888 8999988 456787776 88887654 45667777776 778888
Q ss_pred HHhHHhhHhcCCceecceeeeec------CCCccchhHHHHHH-HHhhhccCCccceEEEEEE--C-CeEEEEEecCCCC
Q 029537 73 FLDKVFRVRLGRGFYGECLGVRA------DGNSYLSDEIGKQL-SARSAAAGLRPIGAVIYMQ--R-NNLKMCLRSTDSA 142 (192)
Q Consensus 73 ~l~~a~~~~~g~~~~~~~l~v~~------~~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~~--~-~~~~vslRS~~~~ 142 (192)
++.+.+....++..+. .+.. +......+.+.+.+ ..++.+. ++++.+ + +.+++|+||++ .
T Consensus 226 ~l~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~d~~~~v~~ll~i~gv~~------~~~~~e~~~~~~i~vs~RS~~-~ 295 (343)
T 3dma_A 226 VLSNMKVYKDYNSALI---SLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCF------SCFLREDTEKKMIKISLRSVG-K 295 (343)
T ss_dssp HHHTCEEETTTTEEEE---EECHHHHHHTTCCTTTTTTGGGGGGGSTTCCE------EEEEEECCCC--EEEEEEESS-S
T ss_pred HHhceEEecCCCEEEE---EEcHHHHHHcCCCHHHHHHHHHHhcccCCEEE------EEEEEEecCCCEEEEEEecCC-C
Confidence 8887766544443321 1221 11122233344444 4444322 344544 3 78999999996 4
Q ss_pred CCHHHHHhh-CCCCCcccccCcccC
Q 029537 143 TDTSEIAKA-YGGGGSASSSSFIIR 166 (192)
Q Consensus 143 ~~v~~iA~~-~gGGGH~~AaG~~~~ 166 (192)
+||++||++ ||||||++|||++++
T Consensus 296 ~~v~~i~~~~~ggGGH~~aag~~~~ 320 (343)
T 3dma_A 296 FPCNRLAAEFFNGGGHLNASGGEFY 320 (343)
T ss_dssp CCHHHHHHHHTSCEECSSEEEEEEC
T ss_pred CCHHHHHHhCCCCCCcHHhCeeEEc
Confidence 999999999 999999999999975
No 2
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=99.57 E-value=1.8e-15 Score=131.97 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHhCc-cccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHHccChH-----HHHhcCcchHHhHHHHHHH
Q 029537 4 VLKYIEDMD-LRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLLEINSV-----DLIAKGNSDISSRQSAANK 72 (192)
Q Consensus 4 lv~~i~d~D-lwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~~~~~~-----~~~~~G~~l~~~~~~~i~~ 72 (192)
+.++++..+ -+..+...++.+++++ ||..|.+ ..++|+.++ +|++.+.+ +.+ ....+.+ .++...
T Consensus 130 v~~~~~~~~~~~~i~~~~A~~L~~GI~tDTg~F~~-~~tt~~t~~aaa~L~~~Gad~~~i~~~l-~~~s~~~--~~l~~~ 205 (320)
T 3dev_A 130 IFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLF-SNTSPHTMEVASQLLAYPFNHNAELNKM-SEKDPKL--MPFQGY 205 (320)
T ss_dssp HHHHHHTTTCTTTCCHHHHHHHHHHHHHHTTTTTS-TTCCHHHHHHHHHHHHSSSCHHHHHHHH-HCBCGGG--HHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHccCcCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHH-HhCCHHH--HHHHHH
Confidence 456666442 1445555677788888 8999888 456677776 88886554 223 3445544 777788
Q ss_pred HHhHHhhHhcCCceecceeeeecC------CCccchhHHHHHH-HHhhhccCCccceEEEEEE-CCeEEEEEecCCCCCC
Q 029537 73 FLDKVFRVRLGRGFYGECLGVRAD------GNSYLSDEIGKQL-SARSAAAGLRPIGAVIYMQ-RNNLKMCLRSTDSATD 144 (192)
Q Consensus 73 ~l~~a~~~~~g~~~~~~~l~v~~~------~~~~~~s~lg~~l-~~~~~~~~l~~~~~~~~~~-~~~~~vslRS~~~~~~ 144 (192)
++.+.+....|+..+. .+... ......+.+.+.+ ..++.+. ++++.+ ++.+++|+||+ ++|
T Consensus 206 ~l~~~~~~~~g~~a~~---~~~~~~~~~~~~~~~~~~~lv~~l~~i~gv~~------~~~~~~~~~~~~~s~RS~--~~~ 274 (320)
T 3dev_A 206 VLQNFELSDSHEYCQI---KITNDVLKQFDIQPNEASQFVNTVADISGLKI------WMFGVDEGDQIRCRIRSK--GIT 274 (320)
T ss_dssp HHHSCCBCTTSSEEEE---EECHHHHHHTTCCHHHHTTCGGGSTTBTTCCE------EEEEEECSSSEEEEEEES--SSC
T ss_pred HHhceEEecCCcEEEE---EEcHHHHHHcCCCHHHHHHHHHHHhCcCCcEE------EEEEEEECCEEEEEEecC--CcC
Confidence 8887776544433221 22210 1111222222343 3333222 244444 55899999999 499
Q ss_pred HHHHHhhCCCCCcccccCccc-ChhhHHHHhh
Q 029537 145 TSEIAKAYGGGGSASSSSFII-RMDEYNQWLS 175 (192)
Q Consensus 145 v~~iA~~~gGGGH~~AaG~~~-~~~~~~~~~~ 175 (192)
|++||++||||||++|||+++ +.+++.+.+.
T Consensus 275 v~~i~~~~gGGGH~~AAg~~~~~~~~~~~~~~ 306 (320)
T 3dev_A 275 INDVANQFGGGGHPNASGVSVYSWDEFEELAQ 306 (320)
T ss_dssp CHHHHHHTTCEEETTEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHhceeecCCHHHHHHHHH
Confidence 999999999999999999996 5666666554
No 3
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=97.87 E-value=2.9e-05 Score=73.59 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHhhhccCCccceEEEEEECCeEEEEEecCCCCCCHHHHHhhC-----CCCCcccccCcccChhhHHHHh
Q 029537 100 YLSDEIGKQLSARSAAAGLRPIGAVIYMQRNNLKMCLRSTDSATDTSEIAKAY-----GGGGSASSSSFIIRMDEYNQWL 174 (192)
Q Consensus 100 ~~~s~lg~~l~~~~~~~~l~~~~~~~~~~~~~~~vslRS~~~~~~v~~iA~~~-----gGGGH~~AaG~~~~~~~~~~~~ 174 (192)
...+.+++.+..+. .. + ++++.. + ++|.||.++ +|+.++.+++ |||||+.|||++++.+.++++.
T Consensus 342 GViGIVAsrl~e~~---~r-P--~iv~a~-~--kgSaRSi~g-~nl~~~L~~~~~ll~~gGGH~~AAG~si~~~~l~~f~ 411 (666)
T 2zxr_A 342 GVMGIVASRILEAT---LR-P--VFLVAQ-G--KGTVRSLAP-ISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFK 411 (666)
T ss_dssp HHHHHHHHHHHHHH---CS-C--EEEEET-T--EEEEECCTT-CCHHHHHHHTGGGCSEEEECSSEEEEECCGGGHHHHH
T ss_pred ccHHHHHHHHHHHh---CC-C--EEEEEC-C--EEEEECCCC-ccHHHHHHHHHhhCcccCCChHHcccccCcccHHHHH
Confidence 33445555554443 22 2 344442 3 899999874 9999998887 8999999999999876666555
Q ss_pred h
Q 029537 175 S 175 (192)
Q Consensus 175 ~ 175 (192)
.
T Consensus 412 ~ 412 (666)
T 2zxr_A 412 A 412 (666)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=80.04 E-value=2.6 Score=35.38 Aligned_cols=43 Identities=7% Similarity=-0.110 Sum_probs=26.5
Q ss_pred HHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHH
Q 029537 4 VLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLL 48 (192)
Q Consensus 4 lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~ 48 (192)
+.++++..+ +......++.+++++ ||..|.+ ..++++.++ +|.
T Consensus 123 v~~~~~~~~-~~i~~~~A~~L~~gI~~DT~~F~~-~~tt~~d~~aa~~L~ 170 (309)
T 2haw_A 123 LNKMYKENN-VKIEKEIAGLMLSAIISDSLLFKS-PTCTDQDVAAAKELA 170 (309)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHHHHHHHHTTTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHH
Confidence 345666655 444444566677777 8998887 345565543 565
No 5
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=72.98 E-value=1.5 Score=37.54 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=34.7
Q ss_pred CccccccCCCcHH----HHHHHhhcCCcccccCcHHHHHHHHccChHHHHhcCcchHH
Q 029537 11 MDLRRWSLPDINA----FRIGLREWRSKLNCITNPYIYKQLLEINSVDLIAKGNSDIS 64 (192)
Q Consensus 11 ~Dlwrf~~~~t~~----i~a~L~~~~fd~~~~~~~~~~~~L~~~~~~~~~~~G~~l~~ 64 (192)
-||..|.+++|++ +++.|...+.|. .++.+++.+.+.+.+...++.+.+
T Consensus 157 tDTg~F~~~~tt~~t~~aaa~L~~~Gad~-----~~i~~~l~~~s~~~~~l~~~~l~~ 209 (320)
T 3dev_A 157 GDTGRFLFSNTSPHTMEVASQLLAYPFNH-----NAELNKMSEKDPKLMPFQGYVLQN 209 (320)
T ss_dssp HHTTTTTSTTCCHHHHHHHHHHHHSSSCH-----HHHHHHHHCBCGGGHHHHHHHHHS
T ss_pred HHccCcCCCCCCHHHHHHHHHHHHcCCCH-----HHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4899999987655 888888888887 466677777777654444444443
No 6
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}
Probab=65.54 E-value=8.9 Score=31.99 Aligned_cols=44 Identities=7% Similarity=-0.111 Sum_probs=25.6
Q ss_pred HHHHHHhCcc-------ccccCCCcHHHHHHH--hhcCCcccccCcHHHHH---HHH
Q 029537 4 VLKYIEDMDL-------RRWSLPDINAFRIGL--REWRSKLNCITNPYIYK---QLL 48 (192)
Q Consensus 4 lv~~i~d~Dl-------wrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~---~L~ 48 (192)
+.++++..+. +.+....++.+++++ ||..|.+ ..+++..++ .|.
T Consensus 113 v~~~~~~~~~~~~~~~~~~i~~~~A~~L~~gI~~DT~~f~~-~~tt~~d~~aa~~L~ 168 (307)
T 2eb0_A 113 IAELYFKDAIDLIGGKKKELKPDLAGLLLSAIISDTVLFKS-PTTTDLDKEMAKKLA 168 (307)
T ss_dssp HHHHHHTTCGGGGTCCCCCCCHHHHHHHHHHHHHHHTTTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCccccccccccCCHHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHH
Confidence 3455555442 344444566677777 8999887 345555443 665
No 7
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=61.97 E-value=3.7 Score=35.28 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=34.8
Q ss_pred CccccccCCCcHH----HHHHHhhcCCcccccCcHHHHHHHHcc-ChHHHHhcCcchHHh
Q 029537 11 MDLRRWSLPDINA----FRIGLREWRSKLNCITNPYIYKQLLEI-NSVDLIAKGNSDISS 65 (192)
Q Consensus 11 ~Dlwrf~~~~t~~----i~a~L~~~~fd~~~~~~~~~~~~L~~~-~~~~~~~~G~~l~~~ 65 (192)
-||..|.+++|++ +++.|...+.|. ..+.+.+.+. +.+.+...++.+.+.
T Consensus 176 tDTg~F~~~~Tt~~t~~aaa~L~~~Gad~-----~~i~~~l~~~~s~~~~~l~~~~l~~~ 230 (343)
T 3dma_A 176 TDTGGFTYNSNNREIYFIISELLSKGIDK-----DDIYRKVYNTYSESRLRLMGYVLSNM 230 (343)
T ss_dssp HHTTTTTSSCCCHHHHHHHHHHHTTTCCH-----HHHHHHHHSCCCHHHHHHHHHHHHTC
T ss_pred HHccCCCCCCCCHHHHHHHHHHHHcCCCH-----HHHHHHHhccCCHHHHHHHHHHHhce
Confidence 4899999997555 788888888887 4666667665 566555555555443
No 8
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=35.00 E-value=24 Score=26.89 Aligned_cols=40 Identities=5% Similarity=-0.156 Sum_probs=26.1
Q ss_pred HHHHHHhCccccccCCCcHHHHHHH--hhcCCcccccCcHHHHH
Q 029537 4 VLKYIEDMDLRRWSLPDINAFRIGL--REWRSKLNCITNPYIYK 45 (192)
Q Consensus 4 lv~~i~d~Dlwrf~~~~t~~i~a~L--~~~~fd~~~~~~~~~~~ 45 (192)
+.++++..+ +......++.+++++ ||..|.+ ..++++.++
T Consensus 123 v~~~~~~~~-~~i~~~~A~~l~~gI~~DTg~f~~-~~tt~~~~~ 164 (188)
T 1wpn_A 123 LNKMYKENN-VKIEKEIAGLMLSAIISDSLLFKS-PTCTDQDVA 164 (188)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHHHHHHHHTTTTS-TTCCHHHHH
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHHHhccCC-CCCCHHHHH
Confidence 456666665 455555677788887 8999887 345565554
No 9
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.80 E-value=10 Score=24.68 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred EecCCCCCCHHHHHhhCCCCCcccccCcccChhhHHHHhh
Q 029537 136 LRSTDSATDTSEIAKAYGGGGSASSSSFIIRMDEYNQWLS 175 (192)
Q Consensus 136 lRS~~~~~~v~~iA~~~gGGGH~~AaG~~~~~~~~~~~~~ 175 (192)
+|++++-+||+.+|++|| ++.+++..+|.
T Consensus 19 Ir~sGGildI~~~a~kyg-----------V~kdeV~~~Lr 47 (59)
T 2xvc_A 19 IVNNGGFLDIEHFSKVYG-----------VEKQEVVKLLE 47 (59)
T ss_dssp HHHTTSEEEHHHHHHHHC-----------CCHHHHHHHHH
T ss_pred HHHcCCEEeHHHHHHHhC-----------CCHHHHHHHHH
Confidence 366654479999999987 66666666665
No 10
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=22.38 E-value=37 Score=23.90 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=23.5
Q ss_pred ECCeEEEEEecCCC---CCCHHH----HHhhCC--CCCcccccCcc-cChhhHHHHh
Q 029537 128 QRNNLKMCLRSTDS---ATDTSE----IAKAYG--GGGSASSSSFI-IRMDEYNQWL 174 (192)
Q Consensus 128 ~~~~~~vslRS~~~---~~~v~~----iA~~~g--GGGH~~AaG~~-~~~~~~~~~~ 174 (192)
.++++.+-.....+ .++.++ +|+.+| |||.|.-|=.. .+.+.+++.+
T Consensus 46 ~~~kv~~v~~v~~~~~~~~~A~~lvk~v~~~~gGkGGGkp~~AQggg~~~~~l~~al 102 (111)
T 3g98_A 46 KGDKINFVIGVSKEISDKVNAKEVIREVGKVLKGGGGGRADLAQGGGKAPDKFPEAV 102 (111)
T ss_dssp ETTEEEEEEEECGGGTTTSCHHHHHHHHHHHTTBCCEECSSEEEEEESCGGGHHHHH
T ss_pred cCCcEEEEEEECHHHhccCCHHHHHHHHHHHcCCCcCCcHHHeeecCCCHHHHHHHH
Confidence 46766554442221 267666 445565 67777643222 2344454444
Done!