BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029538
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana
GN=COX6B-1 PE=2 SV=1
Length = 191
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 128/187 (68%), Gaps = 24/187 (12%)
Query: 1 MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
MA+A + +TPSL+E Y LEKE KQD + KPVEVKEV VT + E T
Sbjct: 1 MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKT----------- 49
Query: 60 VEESKEDAPAPAPEESTEASSASPEDST--SDTAPAAAEESSET-------TEEENSGDQ 110
E++KE++P E S S +ST + APAAAE+++E +EN+ +
Sbjct: 50 -EQAKEESPVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENAS-E 107
Query: 111 EASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169
E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK+YR+
Sbjct: 108 EVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRS 167
Query: 170 LCPSDWV 176
LCPS+WV
Sbjct: 168 LCPSEWV 174
>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana
GN=COX6B-3 PE=2 SV=2
Length = 78
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 54/59 (91%)
Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
+I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC AKGE A EC++FAKYYRALCP +WV
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62
>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana
GN=COX6B-2 PE=2 SV=1
Length = 78
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 54/59 (91%)
Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
+I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC AKGE + +C++FAKYYRALCP +WV
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62
>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2
Length = 86
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 109 DQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR 168
DQEA ++ T D RFP TNQT+HCF YI+Y RC+ AKGE C +F Y+
Sbjct: 6 DQEAPKQ---FTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62
Query: 169 ALCPSDWV 176
+LCP +WV
Sbjct: 63 SLCPMEWV 70
>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=COX12 PE=1 SV=2
Length = 83
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%)
Query: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
L T D RFP NQT+HC+ Y++YH+CV KGE C F K Y ALCP DW+
Sbjct: 9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWI 64
>sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis
thaliana GN=At1g32710 PE=3 SV=2
Length = 134
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 129 RFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
RFP TN+TRHCF R+++YH+C+ G A +C+ Y R++CP + V
Sbjct: 64 RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELV 111
>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1
SV=2
Length = 86
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LC
Sbjct: 6 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65
Query: 172 PSDWV 176
P+ WV
Sbjct: 66 PTSWV 70
>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3
SV=3
Length = 86
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LC
Sbjct: 6 ETKLKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65
Query: 172 PSDWV 176
P+ WV
Sbjct: 66 PTSWV 70
>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3
SV=3
Length = 87
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + KG C+ + + Y++LC
Sbjct: 7 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66
Query: 172 PSDWV 176
P+ WV
Sbjct: 67 PTSWV 71
>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1
PE=3 SV=3
Length = 87
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + KG C+ + + Y++LC
Sbjct: 7 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66
Query: 172 PSDWV 176
P+ WV
Sbjct: 67 PTSWV 71
>sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2
Length = 86
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP WV
Sbjct: 13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 70
>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3
SV=3
Length = 86
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP WV
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 70
>sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1
SV=2
Length = 86
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWV 176
+TAP D RFP NQT++C+ Y+++HRC + AKG C+ + + Y++LCP WV
Sbjct: 13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWV 70
>sp|Q6YFQ2|CX6B2_HUMAN Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2
SV=1
Length = 88
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRA 169
++E P K T P D RFP+ NQ R+C+ +++YHRC+ +G+ C+ + + Y +
Sbjct: 6 AQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHS 65
Query: 170 LCPSDWV 176
LCP WV
Sbjct: 66 LCPISWV 72
>sp|Q6YFQ1|CX6B2_RAT Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2
PE=2 SV=1
Length = 88
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWV 176
+ T P D RFP NQTR+C+ +++YHRCV +G+ CD + + + +LCP WV
Sbjct: 13 QWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWV 72
>sp|Q6YFP9|CX6B2_BOVIN Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1
Length = 88
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWV 176
K T P D RFP NQTR+C+ +++YHRC+ +G+ C+ + + Y +LCP WV
Sbjct: 13 KWPTPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWV 72
>sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2
SV=1
Length = 88
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRA 169
+++ P + T P D RFP NQTR+C+ +++YHRCV +G+ C+ + + + +
Sbjct: 6 AQKPPPGQWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHS 65
Query: 170 LCPSDWV 176
LCP WV
Sbjct: 66 LCPISWV 72
>sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium
discoideum GN=DDB_G0284693 PE=3 SV=1
Length = 78
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWV 176
+L+TAP + RFP NQT+HC+ Y++Y+ CV +C F +LCP+ W+
Sbjct: 5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWI 61
>sp|A7TL57|ATG11_VANPO Autophagy-related protein 11 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG11 PE=3 SV=1
Length = 1219
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 17 LLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEEST 76
L EK + D E+K + S+E T++ ++E+S E + + E+S
Sbjct: 790 LTEKFEADRRALEDEIKAAKEQNMKESMEQQTEQSANQSIDQSIEQSTEQSTEQSTEQSM 849
Query: 77 EAS-SASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETA 124
E S S E S + + E S E +E++N G +A+ + I+ T+
Sbjct: 850 EQSMEQSMEQSVEQSMEHSMEHSMEQSEKQNMGQNDATIDNQSIETPTS 898
>sp|P16263|ODO2_BACSU Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex OS=Bacillus
subtilis (strain 168) GN=odhB PE=3 SV=2
Length = 417
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 15 DYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEE 74
+YLLE E V VE+ ES V ++ + D V+ + E ++ APAP E
Sbjct: 33 EYLLELETDKVN---VELTAEESGVLQEVLKDSGDTVQVGEIIGTISEGAGESSAPAPTE 89
Query: 75 STEASSASPEDSTSDTAPAAAEESSETTEEENS 107
TE+ + E+ ++ PAA E S E E S
Sbjct: 90 KTESKESVKEEKQAE--PAAQEVSEEAQSEAKS 120
>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
Length = 5376
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 14 EDYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAP--A 71
E+ +L +V T P EV V + VT S E + EET + S E+ P
Sbjct: 846 EETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEETISTEVTTVSPEETTLPTEV 905
Query: 72 PEESTEASSASPEDST 87
P STE ++ SPE+++
Sbjct: 906 PTVSTEVTNVSPEETS 921
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.119 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,632,897
Number of Sequences: 539616
Number of extensions: 2963134
Number of successful extensions: 33455
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 1705
Number of HSP's that attempted gapping in prelim test: 22917
Number of HSP's gapped (non-prelim): 8862
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)