Query 029538
Match_columns 192
No_of_seqs 119 out of 258
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 00:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 3.4E-35 1.2E-39 218.5 6.9 72 116-187 6-80 (85)
2 2lqt_A Coiled-coil-helix-coile 94.5 0.031 1.1E-06 41.8 3.7 49 137-186 14-62 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 86.0 0.49 1.7E-05 30.0 2.5 33 139-171 3-35 (38)
4 2lql_A Coiled-coil-helix-coile 82.7 0.53 1.8E-05 35.9 1.8 36 133-168 55-90 (113)
5 2lql_A Coiled-coil-helix-coile 77.2 1.1 3.8E-05 34.1 2.0 45 136-180 12-70 (113)
6 1hp8_A HU-P8; leukemia, cystei 74.8 2.1 7.2E-05 30.6 2.8 35 137-171 5-39 (68)
7 3o18_A C-phycocyanin alpha sub 32.5 84 0.0029 24.8 5.6 59 121-179 65-132 (162)
8 1kn1_B Allophycocyanin; helix- 32.0 65 0.0022 25.3 4.8 58 121-179 64-129 (161)
9 2dod_A Transcription elongatio 27.1 28 0.00097 25.0 1.7 24 121-144 42-67 (82)
10 1uzc_A Hypothetical protein FL 24.1 30 0.001 24.2 1.4 24 121-144 40-66 (71)
11 1kn1_A Allophycocyanin; helix- 21.3 1.5E+02 0.005 23.3 5.0 57 122-179 64-128 (160)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=100.00 E-value=3.4e-35 Score=218.49 Aligned_cols=72 Identities=39% Similarity=0.763 Sum_probs=67.7
Q ss_pred CCCcccccCCCCCCCCChhHHhHHHHhhhhHHHhHhh---cCCChhhHHHHHHHHHhcChHHHHHHHHhhhccch
Q 029538 116 TPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWVCFTKASCALIT 187 (192)
Q Consensus 116 ~~~~~l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClke---kGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~t 187 (192)
.+..+|+|+|+||||||+|||+|||++|++||||++. +|+|.++|++|++.|+||||.+||++||+||.+||
T Consensus 6 ~~~~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~ 80 (85)
T 1v54_H 6 AKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGT 80 (85)
T ss_dssp -CCCCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTC
T ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCC
Confidence 4556799999999999999999999999999999665 99999999999999999999999999999999997
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=94.54 E-value=0.031 Score=41.83 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=43.0
Q ss_pred hHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcChHHHHHHHHhhhccc
Q 029538 137 RHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWVCFTKASCALI 186 (192)
Q Consensus 137 rhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLCP~~WVekWDEqR~y~ 186 (192)
.-|...+..=.+|+..++.|...|..|+..|+ .|=..|++.=-++|.-|
T Consensus 14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~v~~eRRr~G 62 (85)
T 2lqt_A 14 NPCLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNSIVMQRRKNG 62 (85)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Confidence 34999999999999999999999999999999 79999998766666544
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=86.00 E-value=0.49 Score=30.03 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcC
Q 029538 139 CFTRYIEYHRCVAAKGEGAPECDKFAKYYRALC 171 (192)
Q Consensus 139 Cwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLC 171 (192)
|-..--.|.+|+..+|-|.+.|+.+...|+.-|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 555667899999999999999999999988544
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=82.72 E-value=0.53 Score=35.94 Aligned_cols=36 Identities=8% Similarity=0.404 Sum_probs=32.0
Q ss_pred hhHHhHHHHhhhhHHHhHhhcCCChhhHHHHHHHHH
Q 029538 133 TNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR 168 (192)
Q Consensus 133 qNQTrhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~ 168 (192)
+.-.++|-.-+..||.|++.+..+...|....+.|.
T Consensus 55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~ 90 (113)
T 2lql_A 55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFL 90 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 455789999999999999999999999998888876
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=77.17 E-value=1.1 Score=34.14 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=33.3
Q ss_pred HhHHHHhhhhHHHhHhhcCC-C----------hhhHHH---HHHHHHhcChHHHHHHHH
Q 029538 136 TRHCFTRYIEYHRCVAAKGE-G----------APECDK---FAKYYRALCPSDWVCFTK 180 (192)
Q Consensus 136 TrhCwq~Y~DYhRClkekGE-D----------~~~Ck~---frk~Y~SLCP~~WVekWD 180 (192)
.|+|-.-..+|++|+..+++ | ...|-. |.+.-++.|...+-.+|.
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~ 70 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEE 70 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999976643 3 344643 456667789999999997
No 6
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=74.77 E-value=2.1 Score=30.59 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=29.9
Q ss_pred hHHHHhhhhHHHhHhhcCCChhhHHHHHHHHHhcC
Q 029538 137 RHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALC 171 (192)
Q Consensus 137 rhCwq~Y~DYhRClkekGED~~~Ck~frk~Y~SLC 171 (192)
.-|-..--.|..|+..+|-|...|+.+...|+.-|
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc 39 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34777778999999999999999999999998443
No 7
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=32.51 E-value=84 Score=24.77 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred cccCCCCCCCCChh-HHhHHHHhhhhHHHhHh--hcCCChhhHH-----HHHHHHHh-cChHHHHHHH
Q 029538 121 LETAPADFRFPTTN-QTRHCFTRYIEYHRCVA--AKGEGAPECD-----KFAKYYRA-LCPSDWVCFT 179 (192)
Q Consensus 121 l~TaP~DpRFPnqN-QTrhCwq~Y~DYhRClk--ekGED~~~Ck-----~frk~Y~S-LCP~~WVekW 179 (192)
.-+.|....|++.. ....||.-..-|.|++. ..-+|..+-+ +++-.|++ .||..|+-..
T Consensus 65 ~l~~~gG~~y~~~~~~~~~C~RD~~~~LR~itYa~laGd~~~L~e~~L~glre~y~algvp~~~~v~a 132 (162)
T 3o18_A 65 YTTTMQGSQYASTPEGKAKCARDIGYYLRMITYCLVAGGTGPMDEYLIAGLSEINSTFDLSPSWYIEA 132 (162)
T ss_dssp GGGTSCSTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHTTCCHHHHHHH
T ss_pred CccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 34677888888765 47899999999999876 2223333333 68999999 8999887644
No 8
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=31.96 E-value=65 Score=25.30 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=42.9
Q ss_pred cccCCCCCCCCChhHHhHHHHhhhhHHHhHh---hcCCC---hhhH-HHHHHHHHh-cChHHHHHHH
Q 029538 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APEC-DKFAKYYRA-LCPSDWVCFT 179 (192)
Q Consensus 121 l~TaP~DpRFPnqNQTrhCwq~Y~DYhRClk---ekGED---~~~C-k~frk~Y~S-LCP~~WVekW 179 (192)
.-+.|....||+.. ...||.-..-|-|++. .-|+- ...| .+++-.|++ .||..|+-.+
T Consensus 64 ~l~~pgg~~y~~~r-~~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~ 129 (161)
T 1kn1_B 64 DITRPGGNMYTTRR-YAACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQA 129 (161)
T ss_dssp GGGSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHH
T ss_pred CccCCCCCCccHHH-HHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 44566777887544 8899999999999875 22322 2345 788999998 8999998766
No 9
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=27.05 E-value=28 Score=24.97 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=18.7
Q ss_pred cccCCCCCCC--CChhHHhHHHHhhh
Q 029538 121 LETAPADFRF--PTTNQTRHCFTRYI 144 (192)
Q Consensus 121 l~TaP~DpRF--PnqNQTrhCwq~Y~ 144 (192)
|.-.-+|||| .+...++.||+.|.
T Consensus 42 ~~~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 42 LHKIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp HHHHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred HHHHccCCccccCCHHHHHHHHHHHH
Confidence 5566789998 34888899988875
No 10
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.13 E-value=30 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=19.7
Q ss_pred cccCCCCCCC---CChhHHhHHHHhhh
Q 029538 121 LETAPADFRF---PTTNQTRHCFTRYI 144 (192)
Q Consensus 121 l~TaP~DpRF---PnqNQTrhCwq~Y~ 144 (192)
++..-.|||| ++...|+.||..|.
T Consensus 40 ~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 40 MKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp HHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHccCccccccCCHHHHHHHHHHHH
Confidence 5566789998 67899999999885
No 11
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=21.28 E-value=1.5e+02 Score=23.29 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=42.5
Q ss_pred ccCCCCCCCCChhHHhHHHHhhhhHHHhHh--hcCCChh-----hHHHHHHHHHh-cChHHHHHHH
Q 029538 122 ETAPADFRFPTTNQTRHCFTRYIEYHRCVA--AKGEGAP-----ECDKFAKYYRA-LCPSDWVCFT 179 (192)
Q Consensus 122 ~TaP~DpRFPnqNQTrhCwq~Y~DYhRClk--ekGED~~-----~Ck~frk~Y~S-LCP~~WVekW 179 (192)
-+.|....||+.. ...||.-..-|-|++. ...+|.. -=.+++-.|++ .||..|+-.+
T Consensus 64 l~~~gg~~y~~~~-~~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~ 128 (160)
T 1kn1_A 64 VVSPGGNAYGEEM-TATCLRDLDYYLRLVTYGIVSGDVTPIEEIGLVGVREMYKSLGTPISAVAEG 128 (160)
T ss_dssp TSSSSCSSCSTTH-HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHTTTHHHHHHHHTCCHHHHHHH
T ss_pred ccCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3567778888755 8899999999999875 1222222 24578999999 8999999876
Done!