BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029539
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z7H|A Chain A, 2.3 Angstrom Crystal Structure Of Tetanus Neurotoxin Light
Chain
Length = 447
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 6 NKDPIIPCGLIAWSLFNDTYGFSVKGKDLK 35
N DP+ L+ +++NDT GF+++ KDLK
Sbjct: 383 NHDPVKIPNLLDDTIYNDTEGFNIESKDLK 412
>pdb|1YVG|A Chain A, Structural Analysis Of The Catalytic Domain Of Tetanus
Neurotoxin
Length = 468
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 6 NKDPIIPCGLIAWSLFNDTYGFSVKGKDLK 35
N DP+ L+ +++NDT GF+++ KDLK
Sbjct: 378 NHDPVKIPNLLDDTIYNDTEGFNIESKDLK 407
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 71 NSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENN----YNTYDFKG 126
NS + E+ L+V+ + L FR LY I DL ++ I +E+ TY FK
Sbjct: 89 NSPLRPGEKYPLVVF--SHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKD 146
Query: 127 TKSLVLSTTSWI 138
+ + SW+
Sbjct: 147 QSAAEIGDKSWL 158
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 71 NSSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENN----YNTYDFKG 126
NS + E+ L+V+ + L FR LY I DL ++ I +E+ TY FK
Sbjct: 89 NSPLRPGEKYPLVVF--SHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKD 146
Query: 127 TKSLVLSTTSWI 138
+ + SW+
Sbjct: 147 QSAAEIGDKSWL 158
>pdb|1KHO|A Chain A, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
pdb|1KHO|B Chain B, Crystal Structure Analysis Of Clostridium Perfringens
Alpha- Toxin Isolated From Avian Strain Swcp
Length = 370
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 23 DTYGFSVKGKDLKVNKRDIAWGSDKNY-KFGADVFPKNFQVGDVGGKSLNSSI 74
DTY F +K K+LK++ W Y +FG D P N +V G LN I
Sbjct: 305 DTYTFKLKDKNLKIDDIQNMWIRKSKYTEFGDDYKPANIKVIANGNVVLNKDI 357
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 8 DPIIPCGLIAW-SLFNDTYGFSVKGKDLKVNKRDIAWGSDKNYKFGADVFPKNFQVGD 64
D I G IA+ S+ T+GF+ +D+ ++DI WG +K + F P + GD
Sbjct: 149 DLIAYAGTIAYESMGLKTFGFAFGREDIWHPEKDIYWGPEKEW-FPPSTNPNSRYTGD 205
>pdb|1VQZ|A Chain A, Crystal Structure Of A Putative Lipoate-Protein Ligase A
(Sp_1160) From Streptococcus Pneumoniae Tigr4 At 1.99 A
Resolution
Length = 341
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 85 WMRTAALSTFRKLYG--KIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKN 142
++R + R++ G + DL + + E+ +DFK + V++T + +G K
Sbjct: 69 YVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKA 128
Query: 143 DFLGVTFITIGG 154
+F G + I G
Sbjct: 129 EFTGRNDLEIDG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,135
Number of Sequences: 62578
Number of extensions: 277496
Number of successful extensions: 471
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 12
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)