Query 029539
Match_columns 192
No_of_seqs 113 out of 501
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 14:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 4.1E-67 8.8E-72 460.9 14.4 177 6-184 163-350 (351)
2 COG5035 CDC50 Cell cycle contr 100.0 6.7E-61 1.5E-65 416.0 14.4 181 3-185 180-372 (372)
3 PF03381 CDC50: LEM3 (ligand-e 100.0 8.3E-61 1.8E-65 416.1 14.3 169 5-178 97-278 (278)
4 PF01102 Glycophorin_A: Glycop 90.0 0.28 6E-06 38.3 2.7 26 146-171 65-90 (122)
5 COG1470 Predicted membrane pro 68.0 25 0.00054 33.5 7.6 36 101-137 452-487 (513)
6 PF06365 CD34_antigen: CD34/Po 65.7 7.6 0.00016 32.9 3.5 28 145-172 101-128 (202)
7 PF11797 DUF3324: Protein of u 61.4 6.6 0.00014 30.8 2.2 48 86-134 84-131 (140)
8 PF05393 Hum_adeno_E3A: Human 60.7 14 0.00031 27.4 3.7 33 138-170 26-58 (94)
9 PF13120 DUF3974: Domain of un 60.4 9.9 0.00021 28.9 2.9 34 147-185 6-39 (126)
10 PF01102 Glycophorin_A: Glycop 55.7 22 0.00047 27.8 4.2 30 143-172 65-94 (122)
11 PF10204 DuoxA: Dual oxidase m 54.1 12 0.00025 33.3 2.7 32 141-175 240-271 (281)
12 PF15048 OSTbeta: Organic solu 52.9 21 0.00046 28.0 3.7 25 148-172 38-62 (125)
13 PF12606 RELT: Tumour necrosis 52.4 20 0.00044 23.7 3.0 27 147-173 2-28 (50)
14 PF12669 P12: Virus attachment 50.8 12 0.00027 25.3 1.9 25 151-175 3-27 (58)
15 PF01299 Lamp: Lysosome-associ 47.7 14 0.00031 32.5 2.3 26 149-174 274-299 (306)
16 PF08507 COPI_assoc: COPI asso 47.7 50 0.0011 25.5 5.2 28 146-173 85-112 (136)
17 PF05915 DUF872: Eukaryotic pr 46.4 19 0.00042 27.7 2.6 27 141-167 42-68 (115)
18 PF05399 EVI2A: Ectropic viral 41.1 32 0.00069 29.5 3.3 22 143-164 128-149 (227)
19 KOG0196 Tyrosine kinase, EPH ( 36.5 1.4E+02 0.003 30.8 7.4 64 104-167 504-571 (996)
20 PF05915 DUF872: Eukaryotic pr 36.5 38 0.00082 26.0 2.8 25 142-166 72-96 (115)
21 PRK11486 flagellar biosynthesi 36.4 35 0.00076 26.7 2.7 25 148-172 18-42 (124)
22 PF14991 MLANA: Protein melan- 36.1 7.6 0.00017 30.1 -1.1 37 124-172 13-49 (118)
23 PF06679 DUF1180: Protein of u 35.7 72 0.0016 26.1 4.5 29 141-169 90-118 (163)
24 PF05767 Pox_A14: Poxvirus vir 35.5 52 0.0011 24.5 3.3 27 150-176 15-41 (92)
25 PF09788 Tmemb_55A: Transmembr 33.5 34 0.00074 30.0 2.4 41 135-175 186-227 (256)
26 PF10260 SAYSvFN: Uncharacteri 33.3 78 0.0017 22.4 3.8 34 152-185 18-53 (71)
27 KOG2887 Membrane protein invol 33.2 48 0.001 27.5 3.1 30 147-176 50-79 (175)
28 PF02038 ATP1G1_PLM_MAT8: ATP1 32.1 29 0.00062 23.1 1.3 23 145-167 14-36 (50)
29 PF14914 LRRC37AB_C: LRRC37A/B 31.5 1E+02 0.0023 25.0 4.7 36 140-176 116-152 (154)
30 TIGR01478 STEVOR variant surfa 31.4 54 0.0012 29.3 3.3 21 153-173 265-287 (295)
31 PF14927 Neurensin: Neurensin 30.8 59 0.0013 26.0 3.1 26 149-174 47-72 (140)
32 PTZ00370 STEVOR; Provisional 30.4 58 0.0013 29.2 3.3 21 153-173 261-283 (296)
33 PF08114 PMP1_2: ATPase proteo 30.3 48 0.001 21.2 2.1 24 148-171 13-36 (43)
34 PHA02898 virion envelope prote 30.2 61 0.0013 24.1 2.9 14 151-164 46-59 (92)
35 PF04478 Mid2: Mid2 like cell 29.8 6.6 0.00014 31.9 -2.4 8 141-148 48-55 (154)
36 PF04639 Baculo_E56: Baculovir 29.3 24 0.00053 31.5 0.8 22 139-160 272-293 (305)
37 PF14575 EphA2_TM: Ephrin type 28.4 56 0.0012 23.0 2.4 16 150-165 5-20 (75)
38 PF01034 Syndecan: Syndecan do 28.0 22 0.00047 24.8 0.2 9 151-159 19-27 (64)
39 PRK14758 hypothetical protein; 27.7 19 0.00041 20.8 -0.1 11 11-21 15-25 (27)
40 PF04277 OAD_gamma: Oxaloaceta 27.2 1.1E+02 0.0024 21.1 3.7 22 146-167 6-27 (79)
41 PF14654 Epiglycanin_C: Mucin, 27.2 97 0.0021 23.5 3.6 36 142-177 19-54 (106)
42 COG5102 SFT2 Membrane protein 27.0 68 0.0015 26.8 3.0 54 118-175 43-100 (201)
43 PF10582 Connexin_CCC: Gap jun 26.4 53 0.0011 23.0 1.9 21 141-162 42-62 (67)
44 PHA03099 epidermal growth fact 25.2 1.1E+02 0.0024 24.3 3.7 53 122-174 73-131 (139)
45 PF02009 Rifin_STEVOR: Rifin/s 24.9 87 0.0019 28.0 3.5 30 145-174 256-287 (299)
46 TIGR02976 phageshock_pspB phag 24.6 1.4E+02 0.003 21.3 3.8 28 149-176 5-34 (75)
47 PF07234 DUF1426: Protein of u 24.5 1.1E+02 0.0023 23.4 3.4 23 143-165 16-38 (117)
48 PF04156 IncA: IncA protein; 24.2 78 0.0017 25.4 2.9 25 142-166 38-62 (191)
49 PHA02692 hypothetical protein; 23.7 1.2E+02 0.0027 21.5 3.4 22 147-168 46-67 (70)
50 PF11381 DUF3185: Protein of u 22.8 91 0.002 21.3 2.5 25 139-163 34-58 (59)
51 COG5488 Integral membrane prot 22.5 1.1E+02 0.0025 24.9 3.4 31 133-165 21-51 (164)
52 PF03597 CcoS: Cytochrome oxid 22.5 2.2E+02 0.0048 18.2 4.5 30 150-179 6-35 (45)
53 TIGR02736 cbb3_Q_epsi cytochro 22.1 1.1E+02 0.0024 20.8 2.8 15 165-179 19-33 (56)
54 PRK11875 psbT photosystem II r 21.8 1.9E+02 0.0042 17.3 3.6 20 156-175 11-30 (31)
55 PF05545 FixQ: Cbb3-type cytoc 21.7 1.6E+02 0.0034 18.7 3.4 20 154-173 15-34 (49)
56 PF10322 7TM_GPCR_Sru: Serpent 21.3 3E+02 0.0064 24.6 6.2 60 106-172 166-226 (307)
57 PRK00159 putative septation in 21.2 73 0.0016 23.5 1.9 20 137-156 63-82 (87)
58 PF04689 S1FA: DNA binding pro 21.1 67 0.0014 22.5 1.6 18 139-156 8-25 (69)
59 PRK02251 putative septation in 21.0 70 0.0015 23.6 1.8 21 136-156 62-82 (87)
60 PF03988 DUF347: Repeat of Unk 20.9 1.4E+02 0.0029 19.7 3.0 28 145-172 25-52 (55)
61 PHA02726 hypothetical protein; 20.7 1.7E+02 0.0036 21.8 3.7 22 142-163 7-28 (94)
62 PF07413 Herpes_UL37_2: Betahe 20.7 1.4E+02 0.0029 26.6 3.8 36 124-159 222-259 (276)
63 PF13630 SdpI: SdpI/YhfL prote 20.4 1.3E+02 0.0029 20.2 3.1 23 142-164 27-49 (76)
64 PF06667 PspB: Phage shock pro 20.3 2.3E+02 0.0049 20.2 4.3 21 155-175 13-33 (75)
65 PF12158 DUF3592: Protein of u 20.2 3.6E+02 0.0078 20.0 5.7 16 105-120 92-107 (148)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-67 Score=460.91 Aligned_cols=177 Identities=54% Similarity=0.973 Sum_probs=164.0
Q ss_pred CCCeEeechhhhccccceeeeceecCe---eeeeeccccccCCccccccCCCC-------CCCCCccCCCCCccCCCCCC
Q 029539 6 NKDPIIPCGLIAWSLFNDTYGFSVKGK---DLKVNKRDIAWGSDKNYKFGADV-------FPKNFQVGDVGGKSLNSSIP 75 (192)
Q Consensus 6 ~g~~~~PCGliA~S~FNDtf~l~~~~~---~i~~~~~gIaw~sD~~~kf~~~~-------~p~~w~~~~~~~~~~~~~~~ 75 (192)
+||+|+||||||||||||||++...+. .++++++||||++|+ +||+++. +|++|.++...+...|++.|
T Consensus 163 ~~kpi~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~pPpnW~k~~~~gg~~d~n~p 241 (351)
T KOG2952|consen 163 GGKPIYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIVPPPNWQKGYPEGGYTDDNIP 241 (351)
T ss_pred CCceeeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCccccccCCccccccCCcCCcCCCCCC
Confidence 349999999999999999999976533 789999999999999 7999975 49999998833325677888
Q ss_pred CCchhhHHHHHhhccCchhhHhhhhhccC-CCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHHHHHH
Q 029539 76 LSEQEDLIVWMRTAALSTFRKLYGKIEDD-LQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFITIGG 154 (192)
Q Consensus 76 ~~~ne~FivWMr~aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~ylvvG~ 154 (192)
+.+||+||||||+||||+||||||+|+++ |++| +|+++|++||||.+|+|+|++||+|.||+||||+||||+|||||+
T Consensus 242 l~~nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vlst~SwlGgkN~FLgI~YLvVG~ 320 (351)
T KOG2952|consen 242 LSENEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLSTTSWLGGKNPFLGIAYLVVGS 320 (351)
T ss_pred chhhHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEeeccccccCCccceehHHHHHH
Confidence 89999999999999999999999999988 8888 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccCC
Q 029539 155 ICLFLAITFILLYVIKPRPLGDPSYLSWNR 184 (192)
Q Consensus 155 i~~i~~~~f~~~~~~~~r~~gd~~~l~w~~ 184 (192)
+|+++|++|++.|+++||++||+++|+|++
T Consensus 321 ic~~l~~~f~~~~l~~~r~~~d~~~l~~~~ 350 (351)
T KOG2952|consen 321 ICILLGLIFLVIYLFKPRRLGDPSYLSWNR 350 (351)
T ss_pred HHHHHHHHHHHHHhhcccccCCcccccccc
Confidence 999999999999999999999999999986
No 2
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-61 Score=415.95 Aligned_cols=181 Identities=38% Similarity=0.691 Sum_probs=164.2
Q ss_pred CCCCCCeEeechhhhccccceeeecee----cCeeeeeeccccccCCccccccCCC-------CCCCCCccCCCCCccCC
Q 029539 3 ETDNKDPIIPCGLIAWSLFNDTYGFSV----KGKDLKVNKRDIAWGSDKNYKFGAD-------VFPKNFQVGDVGGKSLN 71 (192)
Q Consensus 3 ~~~~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~-------~~p~~w~~~~~~~~~~~ 71 (192)
+++++|+||||||||||||||||+... +.+.+.++.+||||++|++ +|+.+ ++|++|.+.+++||.-+
T Consensus 180 ~~nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkgIaW~sDr~-rykktkYn~sdIvpPPnW~k~ypdGYtd~ 258 (372)
T COG5035 180 SYNEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKGIAWESDRH-RYKKTKYNASDIVPPPNWAKMYPDGYTDD 258 (372)
T ss_pred cccCCCeeecccccccccccccchhhccccccccccccccCCccchhhcc-cccCCCCChhhcCCCCchHhhCCCCCCcc
Confidence 456779999999999999999998643 3456899999999999998 99976 57999999999999744
Q ss_pred CCCCCCchhhHHHHHhhccCchhhHhhhhhccC-CCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHH
Q 029539 72 SSIPLSEQEDLIVWMRTAALSTFRKLYGKIEDD-LQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFI 150 (192)
Q Consensus 72 ~~~~~~~ne~FivWMr~aalp~FrKLYg~i~~~-l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~yl 150 (192)
+-+..+++|.|+||||+||||+|+||++|...| |++| +|+++|+.||||.+|+|+|+|||+|.|.+||||+||||+||
T Consensus 259 NiPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~fLGI~yl 337 (372)
T COG5035 259 NIPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TYQLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYL 337 (372)
T ss_pred CCCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eEEEEEEeecceeecCCceEEEEEecccccCCCcchhhHHH
Confidence 434478999999999999999999999998765 6666 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCC
Q 029539 151 TIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRN 185 (192)
Q Consensus 151 vvG~i~~i~~~~f~~~~~~~~r~~gd~~~l~w~~~ 185 (192)
|||++|.++|++|++.++++||+++||+||+|+.+
T Consensus 338 ivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~ 372 (372)
T COG5035 338 IVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME 372 (372)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence 99999999999999999999999999999999863
No 3
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=8.3e-61 Score=416.14 Aligned_cols=169 Identities=51% Similarity=0.896 Sum_probs=151.8
Q ss_pred CCCCeEeechhhhccccceeeecee----cCeeeeeeccccccCCccccccCCCC-------CCCCCccCCCCCccCCCC
Q 029539 5 DNKDPIIPCGLIAWSLFNDTYGFSV----KGKDLKVNKRDIAWGSDKNYKFGADV-------FPKNFQVGDVGGKSLNSS 73 (192)
Q Consensus 5 ~~g~~~~PCGliA~S~FNDtf~l~~----~~~~i~~~~~gIaw~sD~~~kf~~~~-------~p~~w~~~~~~~~~~~~~ 73 (192)
.++++++||||||||||||||++.. .++.++|+++||||++|++.+|+++. +|++|.+ +++.+..
T Consensus 97 ~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~~~~~~~W~~----~~~~~~~ 172 (278)
T PF03381_consen 97 NNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSNTVPPPNWRP----GYENDTP 172 (278)
T ss_pred CCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccccccCCCceee----eccCCCC
Confidence 5789999999999999999999974 24678999999999999988999853 4667743 1333444
Q ss_pred CCC-CchhhHHHHHhhccCchhhHhhhhh-ccCCCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCchhhHHHHH
Q 029539 74 IPL-SEQEDLIVWMRTAALSTFRKLYGKI-EDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDFLGVTFIT 151 (192)
Q Consensus 74 ~~~-~~ne~FivWMr~aalp~FrKLYg~i-~~~l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~ylv 151 (192)
.|+ .+|||||||||+|+||+|||||||| +++|++|. |+|+|+|||||+.|+|+|+|||+|.||+||||+||||+||+
T Consensus 173 ~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~ivlst~s~~Ggkn~~Lgi~ylv 251 (278)
T PF03381_consen 173 WPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSIVLSTTSWFGGKNYFLGIAYLV 251 (278)
T ss_pred CCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEEEEEeccccCccccHHHHHHHH
Confidence 454 3699999999999999999999999 88999995 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 029539 152 IGGICLFLAITFILLYVIKPRPLGDPS 178 (192)
Q Consensus 152 vG~i~~i~~~~f~~~~~~~~r~~gd~~ 178 (192)
+|++|++++++|++.|+++||++||++
T Consensus 252 vg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 252 VGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999986
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.96 E-value=0.28 Score=38.33 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcC
Q 029539 146 GVTFITIGGICLFLAITFILLYVIKP 171 (192)
Q Consensus 146 gi~ylvvG~i~~i~~~~f~~~~~~~~ 171 (192)
.|+.|++|+++-++++++++.+++++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777777776654
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.97 E-value=25 Score=33.54 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=26.7
Q ss_pred hccCCCCCceEEEEEEeeeeccccCceEEEEEeeccc
Q 029539 101 IEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSW 137 (192)
Q Consensus 101 i~~~l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~ 137 (192)
+..+-.+|+ |.+.|+-.=+.....-+=.+++-+.|-
T Consensus 452 vP~~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~ 487 (513)
T COG1470 452 VPEDAGAGD-YRITITAKSDQASSEDTLRVVVGQSST 487 (513)
T ss_pred cCCCCCCCc-EEEEEEEeeccccccceEEEEEecccc
Confidence 344667775 999998887788887777777777664
No 6
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=65.69 E-value=7.6 Score=32.87 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 145 LGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
+=|+.+++|++|+++++++.+.+++++|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 3355677888888877776655655554
No 7
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=61.40 E-value=6.6 Score=30.76 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=34.8
Q ss_pred HhhccCchhhHhhhhhccCCCCCceEEEEEEeeeeccccCceEEEEEee
Q 029539 86 MRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLST 134 (192)
Q Consensus 86 Mr~aalp~FrKLYg~i~~~l~~g~~y~v~I~nnypv~~f~G~K~ivlst 134 (192)
|+.|+-++|.=.--.-++.|++| +|++.++-...-..|.-+|.+.|+.
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G-~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPG-KYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCC-EEEEEEEEEcCCcEEEEEEEEEECH
Confidence 55777777753222223578887 6999999888888888889988864
No 8
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=60.65 E-value=14 Score=27.43 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=20.1
Q ss_pred cCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHc
Q 029539 138 IGGKNDFLGVTFITIGGICLFLAITFILLYVIK 170 (192)
Q Consensus 138 ~GgkN~fLgi~ylvvG~i~~i~~~~f~~~~~~~ 170 (192)
++-.-.-||+-|+++.++.+++.++.++....+
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kR 58 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCKKR 58 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445788888887766655555555544443
No 9
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=60.37 E-value=9.9 Score=28.89 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPRPLGDPSYLSWNRN 185 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r~~gd~~~l~w~~~ 185 (192)
...++ +++.+++++..+++..+..|+ .||||.+|
T Consensus 6 ~vl~l-~g~llligftivvl~vyfgrk----~ylswakp 39 (126)
T PF13120_consen 6 MVLLL-IGTLLLIGFTIVVLLVYFGRK----FYLSWAKP 39 (126)
T ss_pred HHHHH-HHHHHHHHHHHHhhhheecce----eeeeecCh
Confidence 34443 445555665555555555554 48999764
No 10
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.69 E-value=22 Score=27.76 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 143 DFLGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
--.+|++-||+++.+++.++++++.-.++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357888888888777777666666655555
No 11
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=54.11 E-value=12 Score=33.33 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=26.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 029539 141 KNDFLGVTFITIGGICLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 141 kN~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~g 175 (192)
.+.+|- +++|.+|+++|++++++++..|.++.
T Consensus 240 ~~Fwl~---LatGiLc~l~G~~i~~ld~~~p~~l~ 271 (281)
T PF10204_consen 240 WCFWLT---LATGILCLLLGLIIVFLDYIRPHKLS 271 (281)
T ss_pred cHHHHH---HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 455543 77999999999999999999997653
No 12
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=52.94 E-value=21 Score=28.04 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 148 TFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 148 ~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
+-|+.+++|+++|++++...+...|
T Consensus 38 siL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 38 SILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 5678889999999999987766443
No 13
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=52.41 E-value=20 Score=23.74 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPRP 173 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r~ 173 (192)
+++++|+.+|++.-+.+++.+..+...
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~yg 28 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKAYG 28 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhccc
Confidence 356788888877777777888776653
No 14
>PF12669 P12: Virus attachment protein p12 family
Probab=50.81 E-value=12 Score=25.27 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Q 029539 151 TIGGICLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 151 vvG~i~~i~~~~f~~~~~~~~r~~g 175 (192)
||++|.+++++..++.++++.++-|
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555544444333346666666555
No 15
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=47.67 E-value=14 Score=32.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539 149 FITIGGICLFLAITFILLYVIKPRPL 174 (192)
Q Consensus 149 ylvvG~i~~i~~~~f~~~~~~~~r~~ 174 (192)
=|+||+...+|.++.|+.+++.+|+-
T Consensus 274 PIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 274 PIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHhheeEeccc
Confidence 35577777666666677777766543
No 16
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=47.66 E-value=50 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 029539 146 GVTFITIGGICLFLAITFILLYVIKPRP 173 (192)
Q Consensus 146 gi~ylvvG~i~~i~~~~f~~~~~~~~r~ 173 (192)
++..+++|.+++++|++.++.|+..+++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7778889999999999999999998877
No 17
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=46.44 E-value=19 Score=27.66 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=17.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHH
Q 029539 141 KNDFLGVTFITIGGICLFLAITFILLY 167 (192)
Q Consensus 141 kN~fLgi~ylvvG~i~~i~~~~f~~~~ 167 (192)
|-..|+++.+++|.++++++++.++-+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445666677777777666666555443
No 18
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=41.12 E-value=32 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 029539 143 DFLGVTFITIGGICLFLAITFI 164 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~ 164 (192)
.-+=|++||+|++.+|..++|+
T Consensus 128 ~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788887777777776
No 19
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=36.53 E-value=1.4e+02 Score=30.77 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCCCceEEEEEEeeeec--cccCceEEEEEeec--cccCcCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 029539 104 DLQANDVITVVIENNYNT--YDFKGTKSLVLSTT--SWIGGKNDFLGVTFITIGGICLFLAITFILLY 167 (192)
Q Consensus 104 ~l~~g~~y~v~I~nnypv--~~f~G~K~ivlst~--s~~GgkN~fLgi~ylvvG~i~~i~~~~f~~~~ 167 (192)
.|.+|+.|.|+|...-+. -.|+++-.+--.+. +-..+.+.-|-+.-+++|.+.++++++..+..
T Consensus 504 gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~~~~~~~~~~l~~i~g~~~~~v~~lll~~vv~~~~ 571 (996)
T KOG0196|consen 504 GLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPSESSSQSGEQLPLIIGSILAGVVFLLLAAVVVVAI 571 (996)
T ss_pred ccCCCcEEEEEEEEecccCCCCCCCceeeeecCcccccccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 588999999999876443 34544444322221 11333344444444444544444444433333
No 20
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=36.53 E-value=38 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 029539 142 NDFLGVTFITIGGICLFLAITFILL 166 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~~~ 166 (192)
..-=+++++|+|++|++-|+--+.+
T Consensus 72 ~~~~~~~llilG~L~fIPG~Y~~~i 96 (115)
T PF05915_consen 72 DRDRGWALLILGILCFIPGFYHTRI 96 (115)
T ss_pred CCcccchHHHHHHHHHhccHHHHHH
Confidence 3444668899999999999866643
No 21
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=36.41 E-value=35 Score=26.71 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 148 TFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 148 ~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
..-++|+++++++++|++.++.|+-
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR~ 42 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKRL 42 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456788889999998888877764
No 22
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.11 E-value=7.6 Score=30.10 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=1.2
Q ss_pred cCceEEEEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 124 FKGTKSLVLSTTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 124 f~G~K~ivlst~s~~GgkN~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
|.|+..-.|+.---.| +|.+.+||+++|++-.++.+|
T Consensus 13 ~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 13 FKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp ---------------S------------SS-------------------
T ss_pred cccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeee
Confidence 6677777776655433 345556667666665444443
No 23
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=35.71 E-value=72 Score=26.08 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 029539 141 KNDFLGVTFITIGGICLFLAITFILLYVI 169 (192)
Q Consensus 141 kN~fLgi~ylvvG~i~~i~~~~f~~~~~~ 169 (192)
-...+--+++|+.+++.++.+.|++..+.
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33456677788888888888888876654
No 24
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=35.53 E-value=52 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 029539 150 ITIGGICLFLAITFILLYVIKPRPLGD 176 (192)
Q Consensus 150 lvvG~i~~i~~~~f~~~~~~~~r~~gd 176 (192)
++.|.+.++++++|.+.-+.|..+-.|
T Consensus 15 li~GiiLL~~aCIfAfidfsK~~~~~~ 41 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKNTKPTD 41 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCch
Confidence 456777788888888877777766554
No 25
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.50 E-value=34 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccccCc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 029539 135 TSWIGG-KNDFLGVTFITIGGICLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 135 ~s~~Gg-kN~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~g 175 (192)
.|..|. ..--=+|+|+++|.+++++++.+.+.-+..-+..|
T Consensus 186 vSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~ 227 (256)
T PF09788_consen 186 VSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYG 227 (256)
T ss_pred eccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC
Confidence 456675 34566889999999999999998876665555444
No 26
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=33.34 E-value=78 Score=22.42 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCCCcccc-cCCC
Q 029539 152 IGGICLFLAITFILLY-VIKPRPLGDPSYLS-WNRN 185 (192)
Q Consensus 152 vG~i~~i~~~~f~~~~-~~~~r~~gd~~~l~-w~~~ 185 (192)
.|.+.++++.++++.. +-++|+-|+.|.-| +|+.
T Consensus 18 fG~vf~i~s~f~~I~~Nl~~~r~~ge~SAYSVFN~~ 53 (71)
T PF10260_consen 18 FGPVFFILSGFYLIFTNLGTPRKPGELSAYSVFNKG 53 (71)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCccchhhhCCC
Confidence 4555555555555433 33459999988876 6753
No 27
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.17 E-value=48 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPRPLGD 176 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r~~gd 176 (192)
.+.++.|.+|++++.+.+.....++||.+-
T Consensus 50 ~~cl~~gv~c~~l~~~lf~v~~~~~~kFal 79 (175)
T KOG2887|consen 50 GICLAGGVLCFLLAMVLFPVLVVSPRKFAL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccceeeh
Confidence 345678999999999998888888887653
No 28
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=32.11 E-value=29 Score=23.07 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 029539 145 LGVTFITIGGICLFLAITFILLY 167 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~~~~f~~~~ 167 (192)
|-+.=++++++.|++++++++..
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~ 36 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSG 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccchHHHHHHHHHHHHHHHcC
Confidence 44555778888888888777644
No 29
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=31.51 E-value=1e+02 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=18.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCC
Q 029539 140 GKNDFLGVTFITIGGICLFLAITFILLY-VIKPRPLGD 176 (192)
Q Consensus 140 gkN~fLgi~ylvvG~i~~i~~~~f~~~~-~~~~r~~gd 176 (192)
|.|.-|-++..|++++.+++. +|.++. +..+|..++
T Consensus 116 gY~nklilaisvtvv~~ilii-i~CLiei~shr~a~~~ 152 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILII-IFCLIEICSHRRASEE 152 (154)
T ss_pred cccchhHHHHHHHHHHHHHHH-HHHHHHHHhccccccc
Confidence 455556666666665555554 344444 345555554
No 30
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.40 E-value=54 Score=29.31 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH--HHHcCCC
Q 029539 153 GGICLFLAITFILL--YVIKPRP 173 (192)
Q Consensus 153 G~i~~i~~~~f~~~--~~~~~r~ 173 (192)
+.+.++++++++++ |++++||
T Consensus 265 alvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666554 4556665
No 31
>PF14927 Neurensin: Neurensin
Probab=30.82 E-value=59 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.223 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539 149 FITIGGICLFLAITFILLYVIKPRPL 174 (192)
Q Consensus 149 ylvvG~i~~i~~~~f~~~~~~~~r~~ 174 (192)
-+++|.+++++|++.+.+-+.-||++
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~vP~~~ 72 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYLVPPKI 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 46678888888888887777777643
No 32
>PTZ00370 STEVOR; Provisional
Probab=30.40 E-value=58 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.573 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHH--HHHcCCC
Q 029539 153 GGICLFLAITFILL--YVIKPRP 173 (192)
Q Consensus 153 G~i~~i~~~~f~~~--~~~~~r~ 173 (192)
+.+.++++++++++ |++++||
T Consensus 261 alvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666654 4556665
No 33
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=30.31 E-value=48 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Q 029539 148 TFITIGGICLFLAITFILLYVIKP 171 (192)
Q Consensus 148 ~ylvvG~i~~i~~~~f~~~~~~~~ 171 (192)
.|++||.+++.+...|+...+..+
T Consensus 13 VF~lVglv~i~iva~~iYRKw~aR 36 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQAR 36 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776666666555433
No 34
>PHA02898 virion envelope protein; Provisional
Probab=30.25 E-value=61 Score=24.08 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 029539 151 TIGGICLFLAITFI 164 (192)
Q Consensus 151 vvG~i~~i~~~~f~ 164 (192)
+..++||+++++++
T Consensus 46 alSii~FIlgivl~ 59 (92)
T PHA02898 46 SISIISFILAIILI 59 (92)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554444
No 35
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.77 E-value=6.6 Score=31.88 Aligned_cols=8 Identities=50% Similarity=0.671 Sum_probs=4.7
Q ss_pred CCchhhHH
Q 029539 141 KNDFLGVT 148 (192)
Q Consensus 141 kN~fLgi~ 148 (192)
||..+|+.
T Consensus 48 knIVIGvV 55 (154)
T PF04478_consen 48 KNIVIGVV 55 (154)
T ss_pred ccEEEEEE
Confidence 45666655
No 36
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=29.34 E-value=24 Score=31.52 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=13.1
Q ss_pred CcCCchhhHHHHHHHHHHHHHH
Q 029539 139 GGKNDFLGVTFITIGGICLFLA 160 (192)
Q Consensus 139 GgkN~fLgi~ylvvG~i~~i~~ 160 (192)
-..+.++.+++++.|.+.+++.
T Consensus 272 S~s~~l~piil~IG~vl~i~~I 293 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFI 293 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHh
Confidence 4466788888765444444443
No 37
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.37 E-value=56 Score=23.05 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 029539 150 ITIGGICLFLAITFIL 165 (192)
Q Consensus 150 lvvG~i~~i~~~~f~~ 165 (192)
.+++++.+++++++++
T Consensus 5 ~~~~g~~~ll~~v~~~ 20 (75)
T PF14575_consen 5 SIIVGVLLLLVLVIIV 20 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhheeE
Confidence 3444444444444443
No 38
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.02 E-value=22 Score=24.85 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 029539 151 TIGGICLFL 159 (192)
Q Consensus 151 vvG~i~~i~ 159 (192)
|+|.+|.++
T Consensus 19 Vvgll~ail 27 (64)
T PF01034_consen 19 VVGLLFAIL 27 (64)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444444
No 39
>PRK14758 hypothetical protein; Provisional
Probab=27.66 E-value=19 Score=20.81 Aligned_cols=11 Identities=45% Similarity=0.830 Sum_probs=9.0
Q ss_pred eechhhhcccc
Q 029539 11 IPCGLIAWSLF 21 (192)
Q Consensus 11 ~PCGliA~S~F 21 (192)
.=||++|.+++
T Consensus 15 IlCalia~~fy 25 (27)
T PRK14758 15 ILCALIAARFY 25 (27)
T ss_pred HHHHHHHHHhc
Confidence 45999998876
No 40
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.19 E-value=1.1e+02 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029539 146 GVTFITIGGICLFLAITFILLY 167 (192)
Q Consensus 146 gi~ylvvG~i~~i~~~~f~~~~ 167 (192)
.++.+.+|.+.++|.++.++++
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~ 27 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVIS 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 41
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=27.17 E-value=97 Score=23.51 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 029539 142 NDFLGVTFITIGGICLFLAITFILLYVIKPRPLGDP 177 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~gd~ 177 (192)
-.||-.+.-||.++-|+.++.|.+...+..|...|+
T Consensus 19 eIfLItLasVvvavGl~aGLfFcvR~~lslrn~~~t 54 (106)
T PF14654_consen 19 EIFLITLASVVVAVGLFAGLFFCVRNSLSLRNTFDT 54 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 346777777788888889999998887777766554
No 42
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=27.02 E-value=68 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=33.5
Q ss_pred eeeccccCceEEEEEeeccccCc----CCchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 029539 118 NYNTYDFKGTKSLVLSTTSWIGG----KNDFLGVTFITIGGICLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 118 nypv~~f~G~K~ivlst~s~~Gg----kN~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~g 175 (192)
.+|+..++++.+. +.||+|= |-.-.|+. +..++.|..+....+=+-..+|||.+
T Consensus 43 ~~pt~~~dl~~~~---q~s~F~Lsr~eR~vlF~~C-lLGa~ac~a~~~fmfpVl~lkPrkFi 100 (201)
T COG5102 43 MFPTRKYDLEHYF---QSSEFGLSRFERAVLFSAC-LLGAGACSAFLYFMFPVLRLKPRKFI 100 (201)
T ss_pred ccccccccccccc---ccchhhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhcCcccee
Confidence 4788888887765 6788875 33344555 44555665444444434456888765
No 43
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=26.41 E-value=53 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=15.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 029539 141 KNDFLGVTFITIGGICLFLAIT 162 (192)
Q Consensus 141 kN~fLgi~ylvvG~i~~i~~~~ 162 (192)
|+.|+-.++. ++++|++++++
T Consensus 42 KtIfl~fM~~-~s~vsi~L~l~ 62 (67)
T PF10582_consen 42 KTIFLIFMFA-VSCVSILLNLA 62 (67)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhhHHHHHHH-HHHHHHHHHHH
Confidence 6777777755 68899988764
No 44
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=25.25 E-value=1.1e+02 Score=24.35 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=28.3
Q ss_pred cccCceE--EEEEeeccccCcCCchhhHHH----HHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539 122 YDFKGTK--SLVLSTTSWIGGKNDFLGVTF----ITIGGICLFLAITFILLYVIKPRPL 174 (192)
Q Consensus 122 ~~f~G~K--~ivlst~s~~GgkN~fLgi~y----lvvG~i~~i~~~~f~~~~~~~~r~~ 174 (192)
..|-|++ .+.|...+....+|.+-.++= ++++.+.++.++++.+..+.++||+
T Consensus 73 ~GYtGeRCEh~dLl~~~~~~k~n~~t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 73 HGYTGIRCQHVVLVDYQRSEKPNTTTSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred CCcccccccceeeeeeeccccccchhhhhhhhHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 3455664 455555555555665443332 4444444555555555556666665
No 45
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.95 E-value=87 Score=27.99 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHcCCCC
Q 029539 145 LGVTFITIGGIC--LFLAITFILLYVIKPRPL 174 (192)
Q Consensus 145 Lgi~ylvvG~i~--~i~~~~f~~~~~~~~r~~ 174 (192)
-.|.+.++..+. +++.++++++.+.+.||+
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444 444444455555554444
No 46
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.58 E-value=1.4e+02 Score=21.31 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHcCCCCCC
Q 029539 149 FITIGGIC--LFLAITFILLYVIKPRPLGD 176 (192)
Q Consensus 149 ylvvG~i~--~i~~~~f~~~~~~~~r~~gd 176 (192)
|+++..++ ++++.+.+++|+.+.++.+.
T Consensus 5 fl~~Pliif~ifVap~wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILHYRSKRKTAA 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 34444343 34455566788887777665
No 47
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=24.54 E-value=1.1e+02 Score=23.37 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 029539 143 DFLGVTFITIGGICLFLAITFIL 165 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~~ 165 (192)
.|+|.+|+.+..+.++++++|-+
T Consensus 16 LF~~AIFiAItIlYILLalL~Ev 38 (117)
T PF07234_consen 16 LFFGAIFIAITILYILLALLFEV 38 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788888888888888887754
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.19 E-value=78 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.479 Sum_probs=14.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 029539 142 NDFLGVTFITIGGICLFLAITFILL 166 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~~~ 166 (192)
...+|++-+++|++++.+|+.++..
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666555543
No 49
>PHA02692 hypothetical protein; Provisional
Probab=23.68 E-value=1.2e+02 Score=21.46 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029539 147 VTFITIGGICLFLAITFILLYV 168 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~ 168 (192)
...++++.+..++.++|++.++
T Consensus 46 ~~~ii~~~~~~~~~vll~flYL 67 (70)
T PHA02692 46 TTVFLIGLIAAAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333444444444555444
No 50
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.81 E-value=91 Score=21.27 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=19.5
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHH
Q 029539 139 GGKNDFLGVTFITIGGICLFLAITF 163 (192)
Q Consensus 139 GgkN~fLgi~ylvvG~i~~i~~~~f 163 (192)
-|+..-=.+.|++.|++|.+.+++.
T Consensus 34 TG~~t~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 34 TGSPTDKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred cCCCCchhHHHHHhHHHHHHHHHhh
Confidence 3555566788999999999998764
No 51
>COG5488 Integral membrane protein [Function unknown]
Probab=22.51 E-value=1.1e+02 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=19.5
Q ss_pred eeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 029539 133 STTSWIGGKNDFLGVTFITIGGICLFLAITFIL 165 (192)
Q Consensus 133 st~s~~GgkN~fLgi~ylvvG~i~~i~~~~f~~ 165 (192)
+-.-.+|-+. .++.++++++.|++.+++|+.
T Consensus 21 ~p~rSlg~rg--f~~lm~~~~~~~~~v~~ff~~ 51 (164)
T COG5488 21 TPHRSLGPRG--FGVLMLALGILSLVVAIFFLV 51 (164)
T ss_pred CcccccChhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443 366777888888888877764
No 52
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=22.50 E-value=2.2e+02 Score=18.22 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCcc
Q 029539 150 ITIGGICLFLAITFILLYVIKPRPLGDPSY 179 (192)
Q Consensus 150 lvvG~i~~i~~~~f~~~~~~~~r~~gd~~~ 179 (192)
++.-++++.+..+..+.+-.|..+.-|...
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~GQfdD~e~ 35 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKSGQFDDLEG 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCcc
Confidence 333333344434444555667777777643
No 53
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=22.10 E-value=1.1e+02 Score=20.76 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=11.6
Q ss_pred HHHHHcCCCCCCCcc
Q 029539 165 LLYVIKPRPLGDPSY 179 (192)
Q Consensus 165 ~~~~~~~r~~gd~~~ 179 (192)
+.|+.+..|-|+..|
T Consensus 19 ~yhLYrsek~G~rdY 33 (56)
T TIGR02736 19 IYHLYRSQKKGERDY 33 (56)
T ss_pred HHHhhhhhcccccCH
Confidence 567888888888766
No 54
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=21.78 E-value=1.9e+02 Score=17.28 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 029539 156 CLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 156 ~~i~~~~f~~~~~~~~r~~g 175 (192)
...++++|..+.+..|-++.
T Consensus 11 ~~tlgiiFFAIfFRepPri~ 30 (31)
T PRK11875 11 TLALVTLFFAIAFRDPPKID 30 (31)
T ss_pred HHHHHHHHHhhhccCCCCCC
Confidence 34455666666666665543
No 55
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.75 E-value=1.6e+02 Score=18.71 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 029539 154 GICLFLAITFILLYVIKPRP 173 (192)
Q Consensus 154 ~i~~i~~~~f~~~~~~~~r~ 173 (192)
.+.+++.++.++.+..+||+
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 34444444445666666664
No 56
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=21.32 E-value=3e+02 Score=24.55 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCCceEEEEEEeeeeccccCceEEEEE-eeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 106 QANDVITVVIENNYNTYDFKGTKSLVL-STTSWIGGKNDFLGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 106 ~~g~~y~v~I~nnypv~~f~G~K~ivl-st~s~~GgkN~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
++.| |=.+.+.-|| || +|.| ++.+|.|-+|......+.+.-.++.++.-++++..+.+.|
T Consensus 166 pa~G-~C~Ql~~Pf~---fG---AI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 166 PALG-YCRQLDPPFP---FG---AIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCcE-EEEeCCCCCC---CC---EEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 6666666566 74 5666 6677888888655555555444555554455555555555
No 57
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=21.17 E-value=73 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.4
Q ss_pred ccCcCCchhhHHHHHHHHHH
Q 029539 137 WIGGKNDFLGVTFITIGGIC 156 (192)
Q Consensus 137 ~~GgkN~fLgi~ylvvG~i~ 156 (192)
-+|+-|+..|..++++|.+.
T Consensus 63 ~lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 63 DLGPWNYAIGFALMITGLLM 82 (87)
T ss_pred ccCchhHHHHHHHHHHHHHH
Confidence 35888998888888877654
No 58
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.05 E-value=67 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=10.4
Q ss_pred CcCCchhhHHHHHHHHHH
Q 029539 139 GGKNDFLGVTFITIGGIC 156 (192)
Q Consensus 139 GgkN~fLgi~ylvvG~i~ 156 (192)
=|-|+-|-++..|.|.+.
T Consensus 8 KGlnPGlIVLlvV~g~ll 25 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLL 25 (69)
T ss_pred cCCCCCeEEeehHHHHHH
Confidence 356777766655444443
No 59
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=20.95 E-value=70 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.7
Q ss_pred cccCcCCchhhHHHHHHHHHH
Q 029539 136 SWIGGKNDFLGVTFITIGGIC 156 (192)
Q Consensus 136 s~~GgkN~fLgi~ylvvG~i~ 156 (192)
.-+|+-|+..|..++++|.+.
T Consensus 62 ~~lG~WN~~IGfg~~~~G~~m 82 (87)
T PRK02251 62 PALGAWNLVIGFGLIMAGFGM 82 (87)
T ss_pred ccccchhHHHHHHHHHHHHHH
Confidence 345788998888888877654
No 60
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=20.89 E-value=1.4e+02 Score=19.73 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 145 LGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
||+-|.+.+.+.+++-++.++.+++..|
T Consensus 25 lglg~~~~~~~~~~~l~~~~~~~~~~~~ 52 (55)
T PF03988_consen 25 LGLGYLISTLIFAALLAVVLALWYRSKR 52 (55)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666555555544445555555444
No 61
>PHA02726 hypothetical protein; Provisional
Probab=20.66 E-value=1.7e+02 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=17.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 029539 142 NDFLGVTFITIGGICLFLAITF 163 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f 163 (192)
|+-|+|.|.|+|-++=++..++
T Consensus 7 npilsifYfiig~vs~l~~yl~ 28 (94)
T PHA02726 7 NPILNIFYFMIRKISGIISLLL 28 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998886665444
No 62
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=20.66 E-value=1.4e+02 Score=26.58 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred cCceEEEEEeeccccCcCC--chhhHHHHHHHHHHHHH
Q 029539 124 FKGTKSLVLSTTSWIGGKN--DFLGVTFITIGGICLFL 159 (192)
Q Consensus 124 f~G~K~ivlst~s~~GgkN--~fLgi~ylvvG~i~~i~ 159 (192)
+.+.++..+...+--+|.= -.+|+.+++.|++.++.
T Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~v~~G~~~lL~ 259 (276)
T PF07413_consen 222 WYRRVSFILRVDYRALGHWLAALIGMFFVASGAFMLLS 259 (276)
T ss_pred hccceeEEEecCCcchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5566776666655545543 46777777666665554
No 63
>PF13630 SdpI: SdpI/YhfL protein family
Probab=20.38 E-value=1.3e+02 Score=20.17 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=13.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHH
Q 029539 142 NDFLGVTFITIGGICLFLAITFI 164 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~ 164 (192)
|.+.|..+++.|.+.+++++++.
T Consensus 27 ~r~~g~~~~~~Gi~~~~~~~~~~ 49 (76)
T PF13630_consen 27 HRFAGKIFIIGGIVLLIIGIIIL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655543
No 64
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.31 E-value=2.3e+02 Score=20.21 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 029539 155 ICLFLAITFILLYVIKPRPLG 175 (192)
Q Consensus 155 i~~i~~~~f~~~~~~~~r~~g 175 (192)
++++.+.+-++.|+..+++.+
T Consensus 13 f~ifVap~WL~lHY~sk~~~~ 33 (75)
T PF06667_consen 13 FMIFVAPIWLILHYRSKWKSS 33 (75)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 334555556678887776654
No 65
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=20.15 E-value=3.6e+02 Score=20.02 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=9.3
Q ss_pred CCCCceEEEEEEeeee
Q 029539 105 LQANDVITVVIENNYN 120 (192)
Q Consensus 105 l~~g~~y~v~I~nnyp 120 (192)
.+.|++.+|..+-+=|
T Consensus 92 ~~~G~~V~V~Y~P~~P 107 (148)
T PF12158_consen 92 YPIGDTVTVYYNPNNP 107 (148)
T ss_pred CCCcCEEEEEECCcCC
Confidence 5678755555554455
Done!