Query 029539
Match_columns 192
No_of_seqs 113 out of 501
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 00:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 83.3 2.9 9.8E-05 26.1 5.1 33 142-174 7-39 (44)
2 2ks1_B Epidermal growth factor 77.8 1.8 6.2E-05 27.0 2.8 32 143-174 9-40 (44)
3 2jwa_A Receptor tyrosine-prote 64.5 9.7 0.00033 23.7 3.9 31 142-172 9-39 (44)
4 2k1k_A Ephrin type-A receptor 59.3 17 0.00058 21.7 4.3 26 147-172 13-38 (38)
5 2k9y_A Ephrin type-A receptor 53.4 13 0.00043 22.0 3.0 20 145-164 13-32 (41)
6 2jo1_A Phospholemman; FXYD1, N 39.4 26 0.00089 23.9 3.1 26 144-169 15-40 (72)
7 2zxe_G FXYD10, phospholemman-l 39.2 11 0.00037 26.0 1.2 26 144-169 18-43 (74)
8 1afo_A Glycophorin A; integral 38.1 34 0.0012 20.7 3.2 25 146-170 11-35 (40)
9 2jp3_A FXYD domain-containing 33.9 15 0.00052 24.8 1.2 23 145-167 17-39 (67)
10 2l6w_A Beta-type platelet-deri 33.4 13 0.00045 22.6 0.0 24 149-172 14-37 (39)
11 2knc_B Integrin beta-3; transm 25.3 91 0.0031 21.3 4.1 14 145-158 11-24 (79)
12 2l8s_A Integrin alpha-1; trans 24.9 1.4E+02 0.0049 19.1 5.5 31 143-173 8-40 (54)
13 3mp7_B Preprotein translocase 24.0 85 0.0029 20.5 3.6 22 144-165 36-57 (61)
14 1iij_A ERBB-2 receptor protein 23.4 35 0.0012 20.1 1.4 15 145-159 8-22 (35)
15 2knc_A Integrin alpha-IIB; tra 20.6 1.8E+02 0.006 18.6 4.7 23 143-165 11-33 (54)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.25 E-value=2.9 Score=26.14 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=23.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539 142 NDFLGVTFITIGGICLFLAITFILLYVIKPRPL 174 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~ 174 (192)
....+|+=-|+|++.+++.+++++..+.++|+.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 344568888888888877777776666666643
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=77.83 E-value=1.8 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029539 143 DFLGVTFITIGGICLFLAITFILLYVIKPRPL 174 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~~ 174 (192)
...+|+--|+|++.+++.+++++..+.++|+.
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 34557778888888877777776666666643
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.45 E-value=9.7 Score=23.71 Aligned_cols=31 Identities=3% Similarity=0.094 Sum_probs=18.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 142 NDFLGVTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 142 N~fLgi~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
.+...|+=.++|.+++++..+.+.+++.++|
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 4556688888996655554444444444433
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=59.26 E-value=17 Score=21.69 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
|+=+|+|++.-++.+..++.++.++|
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred eeeeehHHHHHHHHHHHHHHHHeecC
Confidence 56677777665554444444444443
No 5
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=53.44 E-value=13 Score=22.02 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029539 145 LGVTFITIGGICLFLAITFI 164 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~~~~f~ 164 (192)
.+|+--+++++.++++++++
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~ 32 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGV 32 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHHHHHHH
Confidence 33555556666665544443
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=39.42 E-value=26 Score=23.93 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 029539 144 FLGVTFITIGGICLFLAITFILLYVI 169 (192)
Q Consensus 144 fLgi~ylvvG~i~~i~~~~f~~~~~~ 169 (192)
.|-+.=||++++.|++++++++..-.
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCcc
Confidence 35555578889999999998887644
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=39.24 E-value=11 Score=26.03 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 029539 144 FLGVTFITIGGICLFLAITFILLYVI 169 (192)
Q Consensus 144 fLgi~ylvvG~i~~i~~~~f~~~~~~ 169 (192)
.|-|.=||++++.|++++++++....
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HheeccchhHHHHHHHHHHHHHcCcc
Confidence 34555578888999999888876533
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=38.14 E-value=34 Score=20.74 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Q 029539 146 GVTFITIGGICLFLAITFILLYVIK 170 (192)
Q Consensus 146 gi~ylvvG~i~~i~~~~f~~~~~~~ 170 (192)
.++.++.|..+-+++.++++.+..+
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888888777654
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=33.87 E-value=15 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.272 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 029539 145 LGVTFITIGGICLFLAITFILLY 167 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~~~~f~~~~ 167 (192)
|-+.=||++++.|++++++++..
T Consensus 17 LRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heecchhhHHHHHHHHHHHHHcC
Confidence 44555788889999998888755
No 10
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=33.38 E-value=13 Score=22.56 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 149 FITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 149 ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
.++...+..+.-+++++.+..+||
T Consensus 14 vlal~vi~iisLIiLi~~w~qKPr 37 (39)
T 2l6w_A 14 ILALVVLTIISLIILIMLWQKKPR 37 (39)
Confidence 344444444444455566666776
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.25 E-value=91 Score=21.27 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q 029539 145 LGVTFITIGGICLF 158 (192)
Q Consensus 145 Lgi~ylvvG~i~~i 158 (192)
++|+--|+|++.++
T Consensus 11 ~~Iv~gvi~gilli 24 (79)
T 2knc_B 11 LVVLLSVMGAILLI 24 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 44444444444433
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=24.87 E-value=1.4e+02 Score=19.12 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH--HHcCCC
Q 029539 143 DFLGVTFITIGGICLFLAITFILLY--VIKPRP 173 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~~~~--~~~~r~ 173 (192)
+..-|+--++|++.+++.+++++.. ++++++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3334444445555554444444332 444443
No 13
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.00 E-value=85 Score=20.50 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 029539 144 FLGVTFITIGGICLFLAITFIL 165 (192)
Q Consensus 144 fLgi~ylvvG~i~~i~~~~f~~ 165 (192)
..++.++++|.+.+++-+++.+
T Consensus 36 ~~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 36 ITGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777665543
No 14
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.38 E-value=35 Score=20.15 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHH
Q 029539 145 LGVTFITIGGICLFL 159 (192)
Q Consensus 145 Lgi~ylvvG~i~~i~ 159 (192)
..|+--++|.+++++
T Consensus 8 ~sIaagVvglll~vi 22 (35)
T 1iij_A 8 TFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHHHH
Confidence 346666677444333
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.62 E-value=1.8e+02 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=10.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 029539 143 DFLGVTFITIGGICLFLAITFIL 165 (192)
Q Consensus 143 ~fLgi~ylvvG~i~~i~~~~f~~ 165 (192)
+..-|+--++|++.+++.+++++
T Consensus 11 p~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555544444443
Done!