Query 029539
Match_columns 192
No_of_seqs 113 out of 501
Neff 5.9
Searched_HMMs 13730
Date Tue Mar 26 00:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029539.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029539hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 48.4 13 0.00096 19.5 3.6 25 147-173 4-28 (30)
2 d1x4la1 g.39.1.3 (A:8-36) Four 40.0 2.4 0.00018 22.8 -0.3 19 119-137 6-24 (29)
3 d1x68a1 g.39.1.3 (A:8-36) Four 38.3 4.5 0.00033 21.6 0.7 18 120-137 7-24 (29)
4 d2h80a1 a.60.1.3 (A:11-81) Del 28.3 8.9 0.00065 24.5 0.9 21 80-100 12-32 (71)
5 d2dkya1 a.60.1.3 (A:8-85) Dele 25.8 12 0.00084 24.3 1.2 22 79-100 16-37 (78)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 21.4 85 0.0062 20.1 5.2 30 144-173 29-58 (100)
7 d2nuja1 d.38.1.1 (A:3-161) Hyp 20.5 68 0.005 21.6 4.8 68 76-144 40-107 (159)
8 d1iuja_ d.58.4.5 (A:) Hypothet 18.8 26 0.0019 22.5 1.9 40 78-117 58-101 (102)
9 d2axth1 f.23.33.1 (H:2-65) Pho 16.9 1.1E+02 0.0082 18.6 4.8 33 152-184 30-63 (64)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 14.4 1.3E+02 0.0091 19.6 4.8 26 147-172 38-63 (107)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=48.39 E-value=13 Score=19.45 Aligned_cols=25 Identities=20% Similarity=0.558 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPRP 173 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r~ 173 (192)
|+|..+ ..+++++.|+.+.+.-|.+
T Consensus 4 i~yv~i--fac~i~lfffaiffreppr 28 (30)
T d2axtt1 4 ITYVFI--FACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTSCCCC
T ss_pred eehHHH--HHHHHHHHHHHHHhcCCCC
Confidence 555542 5566777777777665543
No 2
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.99 E-value=2.4 Score=22.75 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.1
Q ss_pred eeccccCceEEEEEeeccc
Q 029539 119 YNTYDFKGTKSLVLSTTSW 137 (192)
Q Consensus 119 ypv~~f~G~K~ivlst~s~ 137 (192)
=|..-++|.|+|-+....|
T Consensus 6 kPItg~gg~kyisFE~R~W 24 (29)
T d1x4la1 6 NPISGLGGTKYISFEERQW 24 (29)
T ss_dssp BCCCCSSSCSCEECSSCEE
T ss_pred CcccccCCceEEEeecccc
Confidence 3788899999999888777
No 3
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.26 E-value=4.5 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=15.3
Q ss_pred eccccCceEEEEEeeccc
Q 029539 120 NTYDFKGTKSLVLSTTSW 137 (192)
Q Consensus 120 pv~~f~G~K~ivlst~s~ 137 (192)
|.+-++|.|+|-+....|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 778899999998887666
No 4
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.31 E-value=8.9 Score=24.47 Aligned_cols=21 Identities=24% Similarity=0.695 Sum_probs=17.2
Q ss_pred hhHHHHHhhccCchhhHhhhh
Q 029539 80 EDLIVWMRTAALSTFRKLYGK 100 (192)
Q Consensus 80 e~FivWMr~aalp~FrKLYg~ 100 (192)
-.=--|+|.|+||-+-.||.-
T Consensus 12 ~eAC~WLraaGFpqYAqlyEd 32 (71)
T d2h80a1 12 KEACDWLRAAGFPQYAQLYED 32 (71)
T ss_dssp HHHHHHHHHTTCHHHHHTTTT
T ss_pred HHHHHHHHHcCChHHHHHhhh
Confidence 344579999999999999864
No 5
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.77 E-value=12 Score=24.31 Aligned_cols=22 Identities=18% Similarity=0.634 Sum_probs=17.7
Q ss_pred hhhHHHHHhhccCchhhHhhhh
Q 029539 79 QEDLIVWMRTAALSTFRKLYGK 100 (192)
Q Consensus 79 ne~FivWMr~aalp~FrKLYg~ 100 (192)
--.=--|.|.|+||-+-.||.-
T Consensus 16 A~eAC~WLraaGFpqYAqlyEd 37 (78)
T d2dkya1 16 AKEACDWLRATGFPQYAQLYED 37 (78)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHhhc
Confidence 3344579999999999999964
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.40 E-value=85 Score=20.12 Aligned_cols=30 Identities=3% Similarity=-0.071 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 029539 144 FLGVTFITIGGICLFLAITFILLYVIKPRP 173 (192)
Q Consensus 144 fLgi~ylvvG~i~~i~~~~f~~~~~~~~r~ 173 (192)
+..+..+++...+++.++++.+...++.|+
T Consensus 29 ~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 29 DGFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 334455555556666666666665555554
No 7
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}
Probab=20.55 E-value=68 Score=21.57 Aligned_cols=68 Identities=7% Similarity=-0.002 Sum_probs=45.9
Q ss_pred CCchhhHHHHHhhccCchhhHhhhhhccCCCCCceEEEEEEeeeeccccCceEEEEEeeccccCcCCch
Q 029539 76 LSEQEDLIVWMRTAALSTFRKLYGKIEDDLQANDVITVVIENNYNTYDFKGTKSLVLSTTSWIGGKNDF 144 (192)
Q Consensus 76 ~~~ne~FivWMr~aalp~FrKLYg~i~~~l~~g~~y~v~I~nnypv~~f~G~K~ivlst~s~~GgkN~f 144 (192)
-+-|-++..||..|-..-|+++..-.. .....+-..++.+-.|--..+-|++-.|-+....+|++...
T Consensus 40 hv~n~~Y~~~~e~ar~~~l~~~g~~~~-~~~~~~~vv~~~~i~y~~p~~~gd~v~v~~~v~~~~~~s~~ 107 (159)
T d2nuja1 40 HVNHTAYLRWYESFRLPFLKARHVTDY-GPTSPRLVLKQVHCTYLAEMGMGEDYVITGRVSNFRTTSFT 107 (159)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHTTSCCC-SSSSCEEEEEEEEEEECSCCCTTCEEEEEEEEEEECSSEEE
T ss_pred ceehHHHHHHHHHHHHHHHHHhhhhcc-cchhcceeeeEEEEEEecccccCcEEEEEEEEEecCCcEEE
Confidence 357899999999998888888753221 11222224455555666666678888888888888887643
No 8
>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}
Probab=18.84 E-value=26 Score=22.47 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=23.9
Q ss_pred chhhHHHHHhhccCchhhHhhhhhccCCCCCc----eEEEEEEe
Q 029539 78 EQEDLIVWMRTAALSTFRKLYGKIEDDLQAND----VITVVIEN 117 (192)
Q Consensus 78 ~ne~FivWMr~aalp~FrKLYg~i~~~l~~g~----~y~v~I~n 117 (192)
.-++|..|++...+--..|..|--..++.+|. .|.+.|++
T Consensus 58 s~ea~~a~~~s~~f~~a~~~~~~~~~~~~~~~p~v~~yevV~~~ 101 (102)
T d1iuja_ 58 SEEAFRAWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVLDS 101 (102)
T ss_dssp CHHHHHHHHTSHHHHHHTTTTSSSSCSCBSSCCEEEEEEEEEEC
T ss_pred CHHHHHHHhcCHHHHHHHHhccccccccccCCCceEEEEEEEeC
Confidence 45799999988444444455555444554443 26666654
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.92 E-value=1.1e+02 Score=18.63 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=21.5
Q ss_pred HHHHHHHHH-HHHHHHHHHcCCCCCCCcccccCC
Q 029539 152 IGGICLFLA-ITFILLYVIKPRPLGDPSYLSWNR 184 (192)
Q Consensus 152 vG~i~~i~~-~~f~~~~~~~~r~~gd~~~l~w~~ 184 (192)
+|++..+++ +..++++++...-+-|.-..+|+.
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss~lldgv~v~W~~ 63 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKA 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccceeeccccccccc
Confidence 344443333 334567788888888888888863
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=14.41 E-value=1.3e+02 Score=19.58 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029539 147 VTFITIGGICLFLAITFILLYVIKPR 172 (192)
Q Consensus 147 i~ylvvG~i~~i~~~~f~~~~~~~~r 172 (192)
+..+++..++++.++++.+...++.|
T Consensus 38 v~~i~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 38 VLYIITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34444444455555544444443333
Done!