RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029540
(192 letters)
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 357 bits (917), Expect = e-115
Identities = 156/193 (80%), Positives = 177/193 (91%), Gaps = 1/193 (0%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EA+ LGFDS+MVDGSHL F +NIS+TK IS LAHSKG++VEAELGRLSGTEDGLTVE+Y
Sbjct: 1186 LEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEY 1245
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EAKLTDV+QA+EFIDET IDALAVCIGNVHGKYP+SGPNL+LDLLK+L ALSSKKGVLLV
Sbjct: 1246 EAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLV 1305
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP-KSDLIHLMASAKEAMKAVV 179
LHGASGL LIK CIE GVRKFNVNTEVR AYM++LS P K+DLI +M++AKEAMKAVV
Sbjct: 1306 LHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVV 1365
Query: 180 AEKMRLFGSSGKA 192
AEK+RLFGS+GKA
Sbjct: 1366 AEKLRLFGSAGKA 1378
>gnl|CDD|216305 pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.
Length = 283
Score = 236 bits (605), Expect = 5e-79
Identities = 92/197 (46%), Positives = 129/197 (65%), Gaps = 9/197 (4%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+EAI GF S+M+DGSHLPF++NI+ TK + AH++G+ VEAELGR+ G EDG+ +
Sbjct: 90 LEAIEAGFSSVMIDGSHLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSED 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA TD +A+EF++ T +D+LAV IGNVHG Y P L D LK++ A V LV
Sbjct: 150 EALYTDPEEAKEFVERTGVDSLAVAIGNVHGVYKPGEPKLDFDRLKEIQAAV---PVPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N++T+++ A+ ++ P + D + A+EA
Sbjct: 207 LHGGSGVPDEEIRKAIKLGVAKINIDTDLQWAFTKAVREYLAENPGNYDPRKYLRPAREA 266
Query: 175 MKAVVAEKMRLFGSSGK 191
MK VV EK+RLFGS+GK
Sbjct: 267 MKEVVKEKIRLFGSAGK 283
>gnl|CDD|238477 cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase
and related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the
reversible condensation of dihydroxyacetone phosphate
with glyceraldehyde 3-phsophate to produce tagatose
1,6-bisphosphate. There is an absolute requirement for a
divalent metal ion, usually zinc, and in addition the
enzymes are activated by monovalent cations such as Na+.
The type A and type B Class II FBPA's differ in the
presence and absence of distinct indels in the sequence
that result in differing loop lengths in the structures.
Length = 276
Score = 226 bits (578), Expect = 6e-75
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 11/196 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
AI GF S+M+DGSHLPF++N++ TK + LAH+ G+ VEAELGR+ G EDG+ +
Sbjct: 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD-- 143
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
E LTD +AEEF++ET +DALAV IG HG Y P L D LK++ V LV
Sbjct: 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV---NVPLV 200
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N+NT++R A+ +L PK D +A A EA
Sbjct: 201 LHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEA 260
Query: 175 MKAVVAEKMRLFGSSG 190
+K VV KM LFGS+G
Sbjct: 261 VKEVVKHKMELFGSAG 276
>gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 286
Score = 205 bits (523), Expect = 2e-66
Identities = 91/198 (45%), Positives = 123/198 (62%), Gaps = 9/198 (4%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+AI GF S+M+DGSHLPF++NI+ TK + AH+ G+ VEAELG L G EDG+ +
Sbjct: 92 KQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTD 151
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A EF++ T IDALA IGNVHG Y P L D LK++ S + LV
Sbjct: 152 PADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS---LPLV 208
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PKS-DLIHLMASAKEA 174
LHG SG+ E I+ I+ GV K N++T+++ A+ ++ PK D + A EA
Sbjct: 209 LHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEA 268
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV EK++ FGS+GKA
Sbjct: 269 MKEVVKEKIKEFGSAGKA 286
>gnl|CDD|130918 TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphate aldolase, class
II, various bacterial and amitochondriate protist. This
model represents of one of several subtypes of the class
II fructose-1,6-bisphosphate aldolase, an enzyme of
glycolysis. The subtypes are split into several models
to allow separation of a family of tagatose bisphosphate
aldolases. This form is found in Gram-positive bacteria,
a variety of Gram-negative, and in amitochondriate
protists. The class II enzymes share homology with
tagatose bisphosphate aldolase but not with class I
aldolase [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 282
Score = 178 bits (454), Expect = 3e-56
Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 12/198 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
++AI GF S+M+DGSHLPF++N++ TK + +AH+KG+ VEAELG L G EDG+ +
Sbjct: 91 IKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEK-- 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA+L D ++AE+F+ ET +D LA IG HGKY P L + LK + + LV
Sbjct: 149 EAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGE-PGLDFERLK---EIKELTNIPLV 204
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEA 174
LHGASG+ E IK I+ G+ K N++T+ R A+ ++ + K D ++ A+EA
Sbjct: 205 LHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREA 264
Query: 175 MKAVVAEKMRLFGSSGKA 192
+K V EKMRLFGS+GKA
Sbjct: 265 IKETVKEKMRLFGSAGKA 282
>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 176 bits (448), Expect = 3e-55
Identities = 81/198 (40%), Positives = 114/198 (57%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ + G S+M+DGSHL F++NI+ K + H VEAELGRL G ED L V++
Sbjct: 91 KKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEK 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+A T+ + A EF++ T ID+LAV IG HG Y P L + L ++ S + LV
Sbjct: 151 DAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY-KGEPKLDFERLAEIREKVS---IPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEA 174
LHGASG+ E +K I G+ K NV TE++ A+ D++ + PK +D M K A
Sbjct: 207 LHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV EK+++ GS GK
Sbjct: 267 MKEVVREKIKVCGSEGKL 284
>gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 176 bits (447), Expect = 4e-55
Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ + G S+M+DGSHLPF NIS K + H + VEAELGRL G ED L V++
Sbjct: 91 AQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEA 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+A TD QA EF++ T ID+LAV IG HG Y P L D L + + LV
Sbjct: 151 DALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGE-PKLDFD---RLENIRQWVNIPLV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPK-SDLIHLMASAKEA 174
LHGASGL + I+ I+ G+ K NV TE++ A+ +L P+ +D H + AK A
Sbjct: 207 LHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV++ + G GKA
Sbjct: 267 MKDVVSKVIADCGCEGKA 284
>gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 284
Score = 176 bits (447), Expect = 4e-55
Identities = 87/198 (43%), Positives = 126/198 (63%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
M+ I GF S+M+DGS LP ++NI+ TK + +AH+ G+ VEAELG++ GTED +TV++
Sbjct: 91 MKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDER 150
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
EA +TD +A F++ET +DALA+ IG HG Y P L D L + L + +V
Sbjct: 151 EAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGE-PKLDFDRLAKIKELV---NIPIV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEA 174
LHG+SG+ E I+ I GVRK N++T +R+A++ L D I ++ A+EA
Sbjct: 207 LHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREA 266
Query: 175 MKAVVAEKMRLFGSSGKA 192
K V+ EK+RLFGS+GKA
Sbjct: 267 AKEVIREKIRLFGSAGKA 284
>gnl|CDD|232852 TIGR00167, cbbA, ketose-bisphosphate aldolase. This model is under
revision. Proteins found by this model include
fructose-bisphosphate and tagatose-bisphosphate aldolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 288
Score = 172 bits (438), Expect = 1e-53
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 9/197 (4%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+DGSH PF++NI TK + AH G+ VEAELG L G EDG++V D
Sbjct: 95 QAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADES 154
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
A TD +A+EF+ T +D+LA IGNVHG Y L + L+++ + + LVL
Sbjct: 155 ALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN---LPLVL 211
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR---PKSDLI---HLMASAKEAM 175
HG SG+ E IK I GV K N++TE++ A+ ++ D + ++AM
Sbjct: 212 HGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAM 271
Query: 176 KAVVAEKMRLFGSSGKA 192
K VV EK++LFGS+ KA
Sbjct: 272 KEVVLEKIKLFGSANKA 288
>gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose
bisphosphate family. This model describes
tagatose-1,6-bisphosphate aldolases, and perhaps other
closely related class II aldolases. This tetrameric,
Zn2+-dependent enzyme is related to the class II
fructose bisphosphate aldolase; fructose
1,6-bisphosphate and tagatose 1,6 bisphosphate differ
only in chirality at C4.
Length = 282
Score = 161 bits (410), Expect = 1e-49
Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 10/195 (5%)
Query: 4 IVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAK 63
+ G S M+DGSH PF N+ K + H + VEAELGRL G ED L+V++ +A
Sbjct: 92 VHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDAL 151
Query: 64 LTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHG 123
TD +A+EF++ T +D+LAV IG HG Y P L D L ++ + V LVLHG
Sbjct: 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLY-KKTPKLDFDRLAEIREVVD---VPLVLHG 207
Query: 124 ASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPK-SDLIHLMASAKEAMKA 177
AS + E ++ IE G+ K NV TE++ A+ ++ P+ +D + M K+AMK
Sbjct: 208 ASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKK 267
Query: 178 VVAEKMRLFGSSGKA 192
VV K+ + GS+G+A
Sbjct: 268 VVRNKINVCGSAGRA 282
>gnl|CDD|180705 PRK06806, PRK06806, fructose-bisphosphate aldolase; Provisional.
Length = 281
Score = 160 bits (407), Expect = 3e-49
Identities = 86/199 (43%), Positives = 114/199 (57%), Gaps = 17/199 (8%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EA+ +GF S+M DGSHLP ++NI TK I LA G VEAE+GR+ G+EDG ED E
Sbjct: 92 EALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGS--EDIE 149
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
LT +A+ F +ETD+DALAV IGN HG Y PNL+ D L++++ + LVL
Sbjct: 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGD-PNLRFDRLQEIN---DVVHIPLVL 205
Query: 122 HGASGLSAELIKGCIERGVRKFNVNT--------EVRKAYMDSLSRPKSDLIHLMASAKE 173
HG SG+S E K CI+ G+RK NV T V +++ P SD +
Sbjct: 206 HGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLVLNT---PYSDYFTYHQDVIK 262
Query: 174 AMKAVVAEKMRLFGSSGKA 192
A V + M++FGS KA
Sbjct: 263 AAYENVKKHMQIFGSENKA 281
>gnl|CDD|180701 PRK06801, PRK06801, hypothetical protein; Provisional.
Length = 286
Score = 154 bits (391), Expect = 8e-47
Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG-LTVED 59
+ A+ LGF S+M DGS L +++N+ T+ + + H+ G+ VEAELG + G E G L E
Sbjct: 91 VRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEA 150
Query: 60 YEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLL 119
AK TD A +F+D T IDALAV IGN HGKY KLD + L A+ + G+ L
Sbjct: 151 DSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEP---KLDFAR-LAAIHQQTGLPL 206
Query: 120 VLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR------PKSD-LIHLMASAK 172
VLHG SG+S + IE G+ K N T + +A + ++ + D L+ +
Sbjct: 207 VLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIE 266
Query: 173 EAMKAVVAEKMRLFGSSGKA 192
EA+ VA++MR+FGS+G+A
Sbjct: 267 EAISDTVAQQMRIFGSAGQA 286
>gnl|CDD|181275 PRK08185, PRK08185, hypothetical protein; Provisional.
Length = 283
Score = 151 bits (383), Expect = 1e-45
Identities = 79/201 (39%), Positives = 116/201 (57%), Gaps = 14/201 (6%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
M AI GF S+M+DGS LP+++N++ TK + LAH G+ VE ELG + T G ++E
Sbjct: 85 MRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNT--GTSIEGG 142
Query: 61 EAKL--TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGV 117
+++ TD QAE+F+ T +D LAV IG HG YP P L++DLLK+++ + +
Sbjct: 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINE---RVDI 199
Query: 118 LLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIH------LMASA 171
LVLHG S I ++ GV K N++++++ A+ + SD + SA
Sbjct: 200 PLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDNPSLYEPNQIYPSA 259
Query: 172 KEAMKAVVAEKMRLFGSSGKA 192
EA K VV KM LF S+GKA
Sbjct: 260 IEAAKEVVRHKMDLFNSTGKA 280
>gnl|CDD|181192 PRK07998, gatY, putative fructose-1,6-bisphosphate aldolase;
Reviewed.
Length = 283
Score = 137 bits (347), Expect = 3e-40
Identities = 69/194 (35%), Positives = 117/194 (60%), Gaps = 13/194 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+DG+ LPF++NI+ TK A S G+ VEAELG + G ED V + +
Sbjct: 92 QAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDD-HVSEAD 150
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
K T+ + ++F++ T D LAV IGNVHG P + + LLK + +S V LV+
Sbjct: 151 CK-TEPEKVKDFVERTGCDMLAVSIGNVHGL--EDIPRIDIPLLKRIAEVSP---VPLVI 204
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRP------KSDLIHLMASAKEAM 175
HG SG+ E+++ + V K N+ +++RKA++ ++ + +++L +MA AK+A+
Sbjct: 205 HGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAV 264
Query: 176 KAVVAEKMRLFGSS 189
+ V K+++ S+
Sbjct: 265 EEDVYSKIKMMNSN 278
>gnl|CDD|181501 PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed.
Length = 286
Score = 127 bits (321), Expect = 2e-36
Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+M+D SH PF++N++ TK + AH KG+ VEAELG + G ED + +
Sbjct: 95 EAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADG-- 152
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
D + +E +++T IDALA +G+VHG Y P L K++ + G+ LVL
Sbjct: 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYKGE-PKLG---FKEMEEIGLSTGLPLVL 208
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLMASAKEAM 175
HG +G+ + I+ I G K NVNTE + KA D L+ K D + A+EA+
Sbjct: 209 HGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAI 268
Query: 176 KAVVAEKMRLFGSSGKA 192
K V K++ FG+S +A
Sbjct: 269 KETVKGKIKEFGTSNRA 285
>gnl|CDD|180926 PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.
Length = 293
Score = 128 bits (322), Expect = 2e-36
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 21/207 (10%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+E I +G+ S+M DGSHLP ++N+ K + AH+KG+ VEAE+G + G EDG+
Sbjct: 93 LECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGII---G 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
+ +L + A+ + ET ID LA IGN+HG YP + L LD L+ L G +V
Sbjct: 150 KGELAPIEDAKAMV-ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP--GFPIV 206
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDS---------------LSRPKSDLI 165
LHG SG+ + I+ I+ GV K NVNTE + A+ ++ + D
Sbjct: 207 LHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDYEANEAEYDKKKLFDPR 266
Query: 166 HLMASAKEAMKAVVAEKMRLFGSSGKA 192
+A +A++A V E++ +FGS+ KA
Sbjct: 267 KFLAPGVKAIQASVEERIDVFGSANKA 293
>gnl|CDD|180280 PRK05835, PRK05835, fructose-bisphosphate aldolase; Provisional.
Length = 307
Score = 127 bits (320), Expect = 4e-36
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 31/218 (14%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
+A+ GF S+M+D SH F++N+ T + +AH+ G+ VEAELGRL G ED ++V++ +
Sbjct: 92 KAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKD 151
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVLLV 120
A L + +AE+F+ E+ +D LA IG HG + G P L + L+++ L++ + LV
Sbjct: 152 AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN---IPLV 208
Query: 121 LHGAS---------------------GLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR 159
LHGAS G+ E ++ ++ G+ K N +T++R A++ + +
Sbjct: 209 LHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRK 268
Query: 160 ------PKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
+ DL + A+ A+K VV E+M+L GS+ K
Sbjct: 269 VANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANK 306
>gnl|CDD|183711 PRK12738, kbaY, tagatose-bisphosphate aldolase; Reviewed.
Length = 286
Score = 122 bits (307), Expect = 2e-34
Identities = 74/191 (38%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+ A LTD
Sbjct: 97 GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTD 156
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASG 126
+A+ F++ T +D+LAV IG HG Y S P + L ++ + V LVLHGAS
Sbjct: 157 PQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPKIDFQRLAEIREVVD---VPLVLHGASD 212
Query: 127 LSAELIKGCIERGVRKFNVNTEVRKAYMDSLSR-----PK-SDLIHLMASAKEAMKAVVA 180
+ E ++ IE GV K NV TE++ A+ ++ P+ +D + M +AMK VV
Sbjct: 213 VPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVR 272
Query: 181 EKMRLFGSSGK 191
K+ + GS+ +
Sbjct: 273 NKINVCGSANR 283
>gnl|CDD|169068 PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional.
Length = 285
Score = 120 bits (303), Expect = 8e-34
Identities = 74/197 (37%), Positives = 108/197 (54%), Gaps = 12/197 (6%)
Query: 2 EAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYE 61
EAI GF S+M+D SH PF++N+ TK + AH++ + VEAELG + G ED + E
Sbjct: 95 EAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG-- 152
Query: 62 AKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVL 121
D + + ++ T ID LA +G+VHG Y PNL ++ + GV LVL
Sbjct: 153 VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE-PNLG---FAEMEQVRDFTGVPLVL 208
Query: 122 HGASGLSAELIKGCIERGVRKFNVNTEVR----KAYMDSLSRPKS--DLIHLMASAKEAM 175
HG +G+ I+ I G K NVNTE + KA + L++ + D + ++A+
Sbjct: 209 HGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAI 268
Query: 176 KAVVAEKMRLFGSSGKA 192
KA V K+R FGS+GKA
Sbjct: 269 KATVIGKIREFGSNGKA 285
>gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 347
Score = 113 bits (286), Expect = 1e-30
Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 54/242 (22%)
Query: 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRL----- 48
AI LGF S+M+DGS ++ N+ T+ + +AH+ G+ VE ELG L
Sbjct: 92 QRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLET 151
Query: 49 --SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPN 99
G EDG E ++ LTD +A +F+ +T +DALA+ IG HG Y +G
Sbjct: 152 GMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDV 211
Query: 100 LKLDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIER 138
L +D +K++HA LV+HG+S G+ E I+ I+
Sbjct: 212 LAIDRIKEIHA--RLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKH 269
Query: 139 GVRKFNVNTE--------VRKAYMDSLSRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSG 190
GVRK N++T+ +R+ ++ S + D + A EAMK + + FG++G
Sbjct: 270 GVRKVNIDTDLRLAMTGAIRRFLAENPS--EFDPRKYLKPAMEAMKKICKARYEAFGTAG 327
Query: 191 KA 192
+A
Sbjct: 328 QA 329
>gnl|CDD|238255 cd00453, FTBP_aldolase_II, Fructose/tagarose-bisphosphate aldolase
class II. This family includes fructose-1,6-bisphosphate
(FBP) and tagarose 1,6-bisphosphate (TBP) aldolases.
FBP-aldolase is homodimeric and used in gluconeogenesis
and glycolysis; the enzyme controls the condensation of
dihydroxyacetone phosphate with
glyceraldehyde-3-phosphate to yield
fructose-1,6-bisphosphate. TBP-aldolase is tetrameric
and produces tagarose-1,6-bisphosphate. There is an
absolute requirement for a divalent metal ion, usually
zinc, and in addition the enzymes are activated by
monovalent cations such as Na+. Although structurally
similar, the class I aldolases use a different mechanism
and are believed to have an independent evolutionary
origin.
Length = 340
Score = 109 bits (273), Expect = 5e-29
Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVE--DYEAKLT 65
F S M+D S ++NI GM +E ELG G EDG+ D A T
Sbjct: 122 FSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYT 181
Query: 66 DVNQAEEFIDET----DIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVL--- 118
+ E +A GNVHG Y L +L+D SKK L
Sbjct: 182 QPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHN 241
Query: 119 ---LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
V HG SG +A+ IK + GV K N++T+ + A
Sbjct: 242 SLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWAT 279
>gnl|CDD|130584 TIGR01521, FruBisAldo_II_B, fructose-bisphosphate aldolase, class
II, Calvin cycle subtype. Members of this family are
class II examples of the enzyme fructose-bisphosphate
aldolase, an enzyme both of glycolysis and (in the
opposite direction) of the Calvin cycle of CO2 fixation.
A deep split separates the tightly conserved yeast/E.
coli/Mycobacterium subtype (all species lacking the
Calvin cycle) represented by model TIGR01520 from a
broader group of aldolases that includes both tagatose-
and fructose-bisphosphate aldolases. This model
represents a distinct, elongated, very well conserved
subtype within the latter group. Most species with this
aldolase subtype have the Calvin cycle.
Length = 347
Score = 103 bits (259), Expect = 8e-27
Identities = 75/238 (31%), Positives = 107/238 (44%), Gaps = 50/238 (21%)
Query: 3 AIVLGFDSLMVDGS-----HLP--FKDNISHTKYISFLAHSKGMLVEAELGRL------- 48
AI LGF S+M+DGS P + N+ T + AH+ G VE ELG L
Sbjct: 92 AIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGM 151
Query: 49 SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPNLK 101
EDG E D+ LTD +A +F+ +T +DALAV IG HG Y +G L
Sbjct: 152 GEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLA 211
Query: 102 LDLLKDLHALSSKKGVLLVLHGAS---------------------GLSAELIKGCIERGV 140
+ ++++HA LV+HG+S G+ E I I+ GV
Sbjct: 212 IQRIEEIHARLPDTH--LVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV 269
Query: 141 RKFNVNTEVRKAYMDSLSR-----PKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
RK N++T++R A + R P D + EAM+ V + FG++G A
Sbjct: 270 RKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAGNA 327
>gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase;
Provisional.
Length = 347
Score = 100 bits (251), Expect = 1e-25
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 50/240 (20%)
Query: 1 MEAIVLGFDSLMVDGSHLP-------FKDNISHTKYISFLAHSKGMLVEAELGRL----- 48
AI GF S+M+DGS L + N+ T+ ++ +AH+ G+ VE ELG L
Sbjct: 92 QSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLET 151
Query: 49 --SGTEDGLTVE---DYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKY----PSSGPN 99
+G EDG+ E ++ LTD +QA +F+ T +DALA+ IG HG Y G
Sbjct: 152 GEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDI 211
Query: 100 LKLDLLKDLHALSSKKGVLLVLHGASGLSAEL---------------------IKGCIER 138
L +D ++++HA LV+HG+S + EL I+ I+
Sbjct: 212 LAIDRIEEIHA--RLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKH 269
Query: 139 GVRKFNVNTEVRKAYMDSL------SRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
GVRK N++T++R A ++ + D + A +AM A+ ++ FG++G+A
Sbjct: 270 GVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAGQA 329
>gnl|CDD|180829 PRK07084, PRK07084, fructose-bisphosphate aldolase; Provisional.
Length = 321
Score = 94.0 bits (234), Expect = 3e-23
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 12/133 (9%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
GF S+M+DGSHLP+++N++ TK + AH + VE ELG L+G ED ++ E T
Sbjct: 108 GFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE--HHTYTQ 165
Query: 67 VNQAEEFIDETDIDALAVCIGNVHGKYP----SSGPNLKLDLLKDLHALSSKK--GVLLV 120
+ E+F+ +T +D+LA+ IG HG Y P L+ D+L+++ K+ G +V
Sbjct: 166 PEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEI----EKRIPGFPIV 221
Query: 121 LHGASGLSAELIK 133
LHG+S + E +K
Sbjct: 222 LHGSSSVPQEYVK 234
>gnl|CDD|130583 TIGR01520, FruBisAldo_II_A, fructose-bisphosphate aldolase, class
II, yeast/E. coli subtype. Members of this family are
class II examples of the glycolytic enzyme
fructose-bisphosphate aldolase (FBA). This model
represents one of two deeply split, architecturally
distinct clades of the family that includes class II
fructose-bisphosphate aldolases, tagatose-bisphosphate
aldolases, and related uncharacterized proteins. This
family is well-conserved and includes characterized FBA
from Saccharomyces cerevisiae, Escherichia coli, and
Corynebacterium glutamicum. Proteins outside the scope
of this model may also be designated as class II
fructose-bisphosphate aldolases, but are well separated
in an alignment-based phylogenetic tree [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 357
Score = 72.5 bits (178), Expect = 2e-15
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 8 FDSLMVDGSHLPFKDNIS-HTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEA---- 62
F S M+D S P ++NI KY+ +A K M +E E+G G EDG+ +A
Sbjct: 136 FSSHMIDLSEEPIEENIEICVKYLKRMAKIK-MWLEIEIGITGGEEDGVDNSHMDAEALY 194
Query: 63 -KLTDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKD-------LHALSS 113
+ DV A EE + ++A GNVHG Y L D+L D L +
Sbjct: 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPA 254
Query: 114 KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
K + V HG SG + + IK + GV K N++T+ + AY
Sbjct: 255 AKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWAY 294
>gnl|CDD|238476 cd00946, FBP_aldolase_IIA, Class II Type A,
Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme
catalyses the zinc-dependent, reversible aldol
condensation of dihydroxyacetone phosphate with
glyceraldehyde-3-phosphate to form
fructose-1,6-bisphosphate. FBP aldolase is homodimeric
and used in gluconeogenesis and glycolysis. The type A
and type B Class II FBPA's differ in the presence and
absence of distinct indels in the sequence that result
in differing loop lengths in the structures.
Length = 345
Score = 70.5 bits (173), Expect = 1e-14
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 8 FDSLMVDGSHLPFKDNISH-TKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDYEAKLTD 66
F S M+D S P ++NI KY+ +A M +E E+G G EDG V++ +
Sbjct: 124 FSSHMLDLSEEPLEENIEICKKYLERMA-KINMWLEMEIGITGGEEDG--VDN-----SG 175
Query: 67 VNQAEEFIDETDIDA-------------LAVCIGNVHGKYPSSGPNLKL---------DL 104
V+ AE + D+ +A GNVHG Y N+KL D
Sbjct: 176 VDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVY--KPGNVKLQPEILGEHQDY 233
Query: 105 LKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMD 155
+++ L+ K + V HG SG + E I+ I GV K N++T+ + AY +
Sbjct: 234 VREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWE 284
>gnl|CDD|236406 PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.
Length = 350
Score = 67.1 bits (165), Expect = 2e-13
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 8 FDSLMVDGSHLPFKDNISHTKYIS--FLAHSK--GMLVEAELGRLSGTEDGLTVEDYE-A 62
F S M+D S P ++NI I +L GM +E ELG G EDG+ + +
Sbjct: 129 FSSHMIDLSEEPLEENIE----ICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNS 184
Query: 63 KL----TDVNQA-EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK-- 115
KL DV A E + +A GNVHG Y L+ ++LKD SKK
Sbjct: 185 KLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFG 244
Query: 116 ----GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAY 153
V HG SG + E I+ + GV K N++T+ + A+
Sbjct: 245 LPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAF 286
>gnl|CDD|216564 pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
includes an amino-terminal region of the pilin gene
inverting protein (PIVML) and members of the
IS111A/IS1328/IS1533 family of transposases.
Length = 142
Score = 30.3 bits (69), Expect = 0.28
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 82 LAVCIGNVHGKYPSSG--PNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERG 139
V + + G+ + PN + L L K VL+V+ G L + + G
Sbjct: 11 HDVAVLDDGGEVLKTKKFPN-DPEGLAALLDWLKKLPVLVVMEATGGYGRPLARALRDAG 69
Query: 140 VRKFNVNTEVRKAYMDSLSRPKSD 163
+ VN KA+ SL R K+D
Sbjct: 70 LDVVVVNPRQVKAFRKSLRRAKTD 93
>gnl|CDD|184168 PRK13590, PRK13590, putative bifunctional OHCU
decarboxylase/allantoate amidohydrolase; Provisional.
Length = 591
Score = 30.5 bits (69), Expect = 0.63
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 25/69 (36%)
Query: 43 AELGRLSGTEDGLTVEDYEAKLTDVNQA----------EEFIDETDIDALAVCIGNVHGK 92
AE G+L+ T Y LTD ++A + DE IDA +GNV G+
Sbjct: 199 AEKGQLTVT--------Y---LTDAHRACAQQISHWMRDCGFDEVHIDA----VGNVVGR 243
Query: 93 YPSSGPNLK 101
Y S P K
Sbjct: 244 YKGSTPQAK 252
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 29.3 bits (65), Expect = 1.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 130 ELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMKA 177
+ + C+E V K E+ + L++P S L L+ +AKEAMK+
Sbjct: 247 DFLNRCLEMDVEKRGSAKELLQHPFLKLAKPLSSLTPLILAAKEAMKS 294
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 28.7 bits (64), Expect = 2.0
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 56 TVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKK 115
TV + + +TDVN E I+E + + + P S D +K++ + ++
Sbjct: 130 TVLEGDYLITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSP-----DRVKEIAKICAEY 184
Query: 116 GVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVR 150
V +++GA G+ +E I++ + ++ V+
Sbjct: 185 DVPHLVNGAYGIQSEKYIHLIQQAAKVGRIDAVVQ 219
>gnl|CDD|130665 TIGR01604, PYST-C2, Plasmodium yoelii subtelomeric domain PYST-C2.
This model represents a domain of a paralogous family of
Plasmodium yoelii genes preferentially located in the
subtelomeric regions of the chromosomes. There are no
obvious homologs to these genes in any other organism.
The genes found by this model often are associated with
an N-terminal domain yoelii-specific domain such as
PYST-C1 (TIGR01601).
Length = 150
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLK 106
F + D+ + GNVH +Y L
Sbjct: 14 FSNNEDLPKVVKKNGNVHDEYELKDQKHLEIYLN 47
>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic
MutS3 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 222
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 20 FKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTV 57
F +S T +I S+ +++ ELGR + T DG+ +
Sbjct: 94 FMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAI 131
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 27.4 bits (60), Expect = 4.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 125 SGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKEAMK 176
S + + + C++ V K E+ + +++P S L L+A+AKEA K
Sbjct: 243 SAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEATK 294
>gnl|CDD|216131 pfam00811, Ependymin, Ependymin.
Length = 133
Score = 26.9 bits (60), Expect = 4.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 40 LVEAELGRLSGTEDGLTVEDYEAKLTD 66
E LG S GL V ++ +L +
Sbjct: 55 EGEYYLGSPSVPGQGLRVREWSGRLPE 81
>gnl|CDD|193505 cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an
amidohydrolase. Peptidase M20 family, beta-alanine
synthase (bAS; N-carbamoyl-beta-alanine amidohydrolase
and beta-ureidopropionase; EC 3.5.1.6) subfamily. bAS is
an amidohydrolase and is the final enzyme in the
pyrimidine catabolic pathway, which is involved in the
regulation of the cellular pyrimidine pool. The bAS
catalyzes the irreversible hydrolysis of the
N-carbamylated beta-amino acids to beta-alanine or
aminoisobutyrate under the release of carbon dioxide and
ammonia. Also included in this subfamily is allantoate
amidohydrolase (allantoate deiminase), which catalyzes
the conversion of allantoate to (S)-ureidoglycolate, one
of the crucial alternate steps in purine metabolism. It
is possible that these two enzymes arose from the same
ancestral peptidase that evolved into two structurally
related enzymes with distinct catalytic properties and
biochemical roles within the cell. Yeast requires
beta-alanine as a precursor of pantothenate and coenzyme
A biosynthesis, but generates it mostly via degradation
of spermine. Disorders in pyrimidine degradation and
beta-alanine metabolism caused by beta-ureidopropionase
deficiency (UPB1 gene) in humans are normally associated
with neurological disorders.
Length = 399
Score = 27.0 bits (61), Expect = 6.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 43 AELGRLSGTEDG------LTVEDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSS 96
EL R+ T G LT ED A+ EE E IDA GN+ G+ +
Sbjct: 6 EELARIGATPGGGVTRLALTPEDRAARDWLAAWMEEAGLEVRIDA----AGNLFGRLEGA 61
Query: 97 GPNLK 101
P+L
Sbjct: 62 DPDLP 66
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 27.0 bits (60), Expect = 6.9
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 81 ALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGV 140
L I N + S P LL + + + +LL G S + A LI+ + G+
Sbjct: 188 QLLEMIANERVTHISLVPTQLNRLLDEGGHNENLRKILL---GGSAIPAPLIEEAQQYGL 244
Query: 141 RKFN 144
+
Sbjct: 245 PIYL 248
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 27.0 bits (60), Expect = 7.2
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 23/129 (17%)
Query: 7 GFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLT-VED-YEAKL 64
G D + P+ + SH +A G + E ELGRL + G + +E Y+ L
Sbjct: 156 GVDVETDSRRYYPYGELASH------VAGYVGKINEDELGRLKNEDIGKSGLEKSYDDVL 209
Query: 65 TDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKL-----------DLLKDLHALSS 113
+ E +D I + P G +++L + L A +
Sbjct: 210 RGKDGYREVE----VDRRGNVIPTLKEVKPKDGKDVQLTIDLRLQKAAEEALDKAVANKA 265
Query: 114 KKGVLLVLH 122
K G +VL
Sbjct: 266 KGGAAVVLD 274
>gnl|CDD|113539 pfam04772, Flu_B_M2, Influenza B matrix protein 2 (BM2). M2 is
synthesised in the late phase of infection and
incorporated into the virion. It may be phosphorylated
in vivo. The function of BM2 is unknown.
Length = 109
Score = 25.8 bits (56), Expect = 9.6
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 104 LLKDLHALSSKKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSD 163
+L+ LS +L LH + L + I+RGV N+ +R ++++R S
Sbjct: 1 MLEPFQILSICSFILSALHFMAWTIGHLNQ--IKRGV---NLKIRIRNPNKETINREVSI 55
Query: 164 LIHLMA---SAKEAMKAVVAEKMRLFG 187
L H AKE MK V+++ M +
Sbjct: 56 LRHNYQKEIQAKETMKEVLSDNMEVLS 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,617,338
Number of extensions: 890002
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 964
Number of HSP's successfully gapped: 53
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)