RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029540
(192 letters)
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase
{Escherichia coli [TaxId: 562]}
Length = 284
Score = 154 bits (390), Expect = 2e-47
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ G S M+DGSH PF +N+ K + HS+ VEAELGRL G ED ++V+
Sbjct: 90 RRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAE 149
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
A LTD +A+ F++ T +D+LAV IG HG Y S P + L ++ V LV
Sbjct: 150 SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY-SKTPKIDFQRLAEIR---EVVDVPLV 205
Query: 121 LHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL-----SRPKS-DLIHLMASAKEA 174
LHGAS + E ++ IE GV K NV TE++ A+ ++ P+ D + M +A
Sbjct: 206 LHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDA 265
Query: 175 MKAVVAEKMRLFGSSGKA 192
MK VV K+ + GS+ +
Sbjct: 266 MKEVVRNKINVCGSANRI 283
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
{Thermus aquaticus [TaxId: 271]}
Length = 305
Score = 153 bits (388), Expect = 6e-47
Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 25/217 (11%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDGLTVEDY 60
+ A+ GF S+M+D SH F+ N+ T+ + AH+ G+ VEAELGRL+G E+ + V++
Sbjct: 89 LRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK 148
Query: 61 EAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSG-PNLKLDLLKDLHALSSKKGVL- 118
+A LT+ +A F++ T D LAV IG HG Y G P + L+ + L VL
Sbjct: 149 DALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLH 208
Query: 119 -----------------LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL---- 157
+ A+G+ E IK I G+ K N +T++R A+ +
Sbjct: 209 GASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREAL 268
Query: 158 -SRPKS-DLIHLMASAKEAMKAVVAEKMRLFGSSGKA 192
PK D + A+EA+K VV +M LFGS G+A
Sbjct: 269 NKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA 305
>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase)
{Escherichia coli [TaxId: 562]}
Length = 358
Score = 134 bits (339), Expect = 5e-39
Identities = 52/227 (22%), Positives = 81/227 (35%), Gaps = 36/227 (15%)
Query: 1 MEAIVLGFDSLMVDGSHLPFKDNISHTKYISFLAHSKGMLVEAELGRLSGTEDG--LTVE 58
F S M+D S ++NI GM +E ELG G EDG +
Sbjct: 131 AATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHM 190
Query: 59 DYEAKLTDVNQA----EEFIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSK 114
D A T E + +A GNVHG Y + L +L+D SK
Sbjct: 191 DASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSK 250
Query: 115 KGVL------LVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSL----------- 157
K L V HG SG +A+ IK + GV K N++T+ + A + +
Sbjct: 251 KHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYL 310
Query: 158 -------------SRPKSDLIHLMASAKEAMKAVVAEKMRLFGSSGK 191
++ D + + + +M A + + + +
Sbjct: 311 QGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDV 357
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 28.1 bits (62), Expect = 0.72
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 114 KKGVLLVLHGASGL-SAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPK 161
KK +L+V G S + E ER + + ++ +A+ + K
Sbjct: 1 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRK 49
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 27.1 bits (60), Expect = 1.3
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
FIDE IDA+ G+ G LL ++ ++++
Sbjct: 106 FIDE--IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 151
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 25.9 bits (57), Expect = 2.8
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 73 FIDETDIDALAVCIGNVHGKYPSSGPNLKLDLLKDLHALSSKKGVLLV 120
FIDE IDA+ G G +L ++ +G++++
Sbjct: 109 FIDE--IDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154
>d1tjna_ c.92.1.3 (A:) Sirohydrochlorin cobaltochelatase CbiX
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 125
Score = 24.9 bits (54), Expect = 3.9
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 114 KKGVLLVLHGASGLSAELIKGCIERGVRKFNVNTEVRKAYMDSLSRPKSDLIHLMASAKE 173
++G+++V HG+ + + + + EV+ A+ RP +
Sbjct: 2 RRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRP---MPDEAIREMN 58
Query: 174 AMKAVV 179
V
Sbjct: 59 CDIIYV 64
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 25.0 bits (54), Expect = 6.0
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 58 EDYEAKLTDVNQAEEFIDETDIDALAVCIGNVHGKYPSSGPNLKLD 103
E + + + ++++DE +D L GNV GP + +
Sbjct: 208 EFLGIRDVVIEEIKDYVDEVKVDKL----GNVIAHKKGEGPKVMIA 249
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus
subtilis [TaxId: 1423]}
Length = 270
Score = 24.9 bits (54), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 94 PSSGPNLKLDLLKDLHALSSKKGVLLVLH 122
++ P K + +DL AL KKG+ +++H
Sbjct: 7 STTFPRTKQSITEDLKALGLKKGMTVLVH 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,449
Number of extensions: 28498
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 11
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)