BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029541
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y69|H Chain H, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|U Chain U, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
Length = 86
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEK 178
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP W+
Sbjct: 13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 179 WNEQRENGTFPGPL 192
W+++R GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86
>pdb|1OCC|H Chain H, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|U Chain U, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|H Chain H, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|U Chain U, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|H Chain H, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|U Chain U, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|H Chain H, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|U Chain U, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1V54|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|H Chain H, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|U Chain U, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|H Chain H, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|U Chain U, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|H Chain H, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|U Chain U, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|H Chain H, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|U Chain U, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|H Chain H, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|U Chain U, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|H Chain H, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|U Chain U, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|H Chain H, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|U Chain U, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|H Chain H, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|U Chain U, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|H Chain H, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|U Chain U, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|H Chain H, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|U Chain U, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|H Chain H, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|U Chain U, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|H Chain H, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|U Chain U, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|H Chain H, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|U Chain U, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|H Chain H, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|U Chain U, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|2YBB|S Chain S, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 85
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEK 178
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP W+
Sbjct: 12 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 71
Query: 179 WNEQRENGTFPGPL 192
W+++R GTFPG +
Sbjct: 72 WDDRRAEGTFPGKI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,491,804
Number of Sequences: 62578
Number of extensions: 154737
Number of successful extensions: 181
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)