BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029541
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana
GN=COX6B-1 PE=2 SV=1
Length = 191
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 144/203 (70%), Gaps = 24/203 (11%)
Query: 1 MAEAQSDKTPSLAEDYLLEKE-KQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAA 59
MA+A + +TPSL+E Y LEKE KQD + KPVEVKEV VT + E T
Sbjct: 1 MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKT----------- 49
Query: 60 VEESKEDAPAPAPEESTEASSASPEDST--SDTAPAAAEESSET-------TEEENSGDQ 110
E++KE++P E S S +ST + APAAAE+++E +EN+ +
Sbjct: 50 -EQAKEESPVEEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENAS-E 107
Query: 111 EASEETPD-IKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169
E +EETPD IKLETAPADFRFPTTNQTRHCFTRY+EYHRCVAAKG+ APECDKFAK+YR+
Sbjct: 108 EVAEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRS 167
Query: 170 LCPSDWIEKWNEQRENGTFPGPL 192
LCPS+W+++WNEQRENGTFPGPL
Sbjct: 168 LCPSEWVDRWNEQRENGTFPGPL 190
>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana
GN=COX6B-3 PE=2 SV=2
Length = 78
Score = 144 bits (363), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 69/75 (92%)
Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIE 177
+I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC AKGE A EC++FAKYYRALCP +W++
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63
Query: 178 KWNEQRENGTFPGPL 192
KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78
>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana
GN=COX6B-2 PE=2 SV=1
Length = 78
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 70/75 (93%)
Query: 118 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIE 177
+I+L+TAPADFRFPTTNQTRHCFTRYIE+HRC AKGE + +C++FAKYYRALCP +W++
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63
Query: 178 KWNEQRENGTFPGPL 192
KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78
>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2
Length = 86
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 109 DQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYR 168
DQEA ++ T D RFP TNQT+HCF YI+Y RC+ AKGE C +F Y+
Sbjct: 6 DQEAPKQ---FTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62
Query: 169 ALCPSDWIEKWNEQRENGTFPGPL 192
+LCP +W+E+W+EQRENGTFP P+
Sbjct: 63 SLCPMEWVERWDEQRENGTFPAPI 86
>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=COX12 PE=1 SV=2
Length = 83
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWN 180
L T D RFP NQT+HC+ Y++YH+CV KGE C F K Y ALCP DWIEKW+
Sbjct: 9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68
Query: 181 EQRENGTFPGPL 192
+QRE G F G +
Sbjct: 69 DQREKGIFAGDI 80
>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1
SV=2
Length = 86
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LC
Sbjct: 6 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65
Query: 172 PSDWIEKWNEQRENGTFPGPL 192
P+ W+ W+EQR GTFPG +
Sbjct: 66 PTSWVTDWDEQRAEGTFPGKI 86
>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3
SV=3
Length = 86
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LC
Sbjct: 6 ETKLKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLC 65
Query: 172 PSDWIEKWNEQRENGTFPGPL 192
P+ W+ W+EQR GTFPG +
Sbjct: 66 PTSWVTDWDEQRAEGTFPGKI 86
>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3
SV=3
Length = 87
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + KG C+ + + Y++LC
Sbjct: 7 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66
Query: 172 PSDWIEKWNEQRENGTFPGPL 192
P+ W+ W+EQR GTFPG +
Sbjct: 67 PTSWVTDWDEQRAEGTFPGKI 87
>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1
PE=3 SV=3
Length = 87
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 115 ETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALC 171
ET +TAP D RFP NQTR+C+ Y+++HRC + KG C+ + + Y++LC
Sbjct: 7 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLC 66
Query: 172 PSDWIEKWNEQRENGTFPGPL 192
P+ W+ W+EQR GTFPG +
Sbjct: 67 PTSWVTDWDEQRAEGTFPGKI 87
>sp|Q6YFQ1|CX6B2_RAT Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2
PE=2 SV=1
Length = 88
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 123 TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKW 179
T P D RFP NQTR+C+ +++YHRCV +G+ CD + + + +LCP W+++W
Sbjct: 16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRW 75
Query: 180 NEQRENGTFPGPL 192
NEQ + GTFPG +
Sbjct: 76 NEQIKQGTFPGKI 88
>sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2
Length = 86
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEK 178
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP W+
Sbjct: 13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 179 WNEQRENGTFPGPL 192
W+++R GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86
>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3
SV=3
Length = 86
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEK 178
+TAP D RFP NQTR+C+ Y+++HRC + AKG C+ + + Y++LCP W+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 179 WNEQRENGTFPGPL 192
W+++R GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86
>sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2
SV=1
Length = 88
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRA 169
+++ P + T P D RFP NQTR+C+ +++YHRCV +G+ C+ + + + +
Sbjct: 6 AQKPPPGQWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHS 65
Query: 170 LCPSDWIEKWNEQRENGTFPG 190
LCP W+++WNEQ + GTFPG
Sbjct: 66 LCPISWVQRWNEQIKQGTFPG 86
>sp|Q6YFQ2|CX6B2_HUMAN Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2
SV=1
Length = 88
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 113 SEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAK---GEGAPECDKFAKYYRA 169
++E P K T P D RFP+ NQ R+C+ +++YHRC+ + G+ C+ + + Y +
Sbjct: 6 AQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHS 65
Query: 170 LCPSDWIEKWNEQRENGTFPGPL 192
LCP W+E WNEQ +NG F G +
Sbjct: 66 LCPISWVESWNEQIKNGIFAGKI 88
>sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1
SV=2
Length = 86
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 122 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEK 178
+TAP D RFP NQT++C+ Y+++HRC + AKG C+ + + Y++LCP W+
Sbjct: 13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSA 72
Query: 179 WNEQRENGTFPGPL 192
W+++ GTFPG +
Sbjct: 73 WDDRIAEGTFPGKI 86
>sp|Q6YFP9|CX6B2_BOVIN Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1
Length = 88
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWI 176
K T P D RFP NQTR+C+ +++YHRC+ +G+ C+ + + Y +LCP W+
Sbjct: 13 KWPTPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWV 72
Query: 177 EKWNEQRENGTFPGPL 192
++W EQ ++GTF G +
Sbjct: 73 QRWKEQIKDGTFAGKI 88
>sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium
discoideum GN=DDB_G0284693 PE=3 SV=1
Length = 78
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 120 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKW 179
+L+TAP + RFP NQT+HC+ Y++Y+ CV +C F +LCP+ WI +W
Sbjct: 5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEW 64
Query: 180 NEQRENGTFP 189
+EQ+ FP
Sbjct: 65 DEQKAADLFP 74
>sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis
thaliana GN=At1g32710 PE=3 SV=2
Length = 134
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 129 RFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEK-W 179
RFP TN+TRHCF R+++YH+C+ G A +C+ Y R++CP + + K W
Sbjct: 64 RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIW 115
>sp|A7TL57|ATG11_VANPO Autophagy-related protein 11 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG11 PE=3 SV=1
Length = 1219
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 17 LLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEEST 76
L EK + D E+K + S+E T++ ++E+S E + + E+S
Sbjct: 790 LTEKFEADRRALEDEIKAAKEQNMKESMEQQTEQSANQSIDQSIEQSTEQSTEQSTEQSM 849
Query: 77 EAS-SASPEDSTSDTAPAAAEESSETTEEENSGDQEASEETPDIKLETA 124
E S S E S + + E S E +E++N G +A+ + I+ T+
Sbjct: 850 EQSMEQSMEQSVEQSMEHSMEHSMEQSEKQNMGQNDATIDNQSIETPTS 898
>sp|P16263|ODO2_BACSU Dihydrolipoyllysine-residue succinyltransferase component of
2-oxoglutarate dehydrogenase complex OS=Bacillus
subtilis (strain 168) GN=odhB PE=3 SV=2
Length = 417
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 15 DYLLEKEKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAAAVEESKEDAPAPAPEE 74
+YLLE E V VE+ ES V ++ + D V+ + E ++ APAP E
Sbjct: 33 EYLLELETDKV---NVELTAEESGVLQEVLKDSGDTVQVGEIIGTISEGAGESSAPAPTE 89
Query: 75 STEASSASPEDSTSDTAPAAAEESSETTEEENS 107
TE+ + E+ ++ PAA E S E E S
Sbjct: 90 KTESKESVKEEKQAE--PAAQEVSEEAQSEAKS 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.301 0.119 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,079,596
Number of Sequences: 539616
Number of extensions: 3233474
Number of successful extensions: 33882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 1719
Number of HSP's that attempted gapping in prelim test: 23230
Number of HSP's gapped (non-prelim): 8990
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 58 (26.9 bits)